Citrus Sinensis ID: 032336

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIKDDDDVN
Secondary Structure (PSIPRED)
ccccEEEEccccccHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccccHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHccccccccccccccHHccHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mvfgqvvigppgsgkttycnGMSQFLSLIgsniccsnvFYLQAVHNSACRKLTKELCDVIedyslvnfstldiqdKESVAKLVKLIDksngyifagmdasAVEFSKIAVrnvdwdyyrypsfhLFQSLAEVQEKyikddddvn
Flexible Loop (DISEMBL)
mvfgqvvigppgsgktTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYslvnfstldiqdkeSVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEkyikddddvn
Low Complexity Region (SEG)
MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIKDDDDVN
Disordered region (IsUnstruct)
*****VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY********
Disordered Region (DISOPRED)
MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFS**AVR*VDWDYYRYPSFHLFQSLAEVQEKYIKD*****
Disordered Region (DISEMBL)
MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIKDDDDVN
Disordered Region (DISPRO)
MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIKDD****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIKDDDDVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q54TE7	315	GPN-loop GTPase 2 homolog	yes	no	0.650	0.295	0.418	5e-12
Q4R579	310	GPN-loop GTPase 2 OS=Maca	N/A	no	0.545	0.251	0.402	5e-11
Q9H9Y4	310	GPN-loop GTPase 2 OS=Homo	yes	no	0.545	0.251	0.402	8e-11
Q58DD9	310	GPN-loop GTPase 2 OS=Sus	yes	no	0.573	0.264	0.395	1e-10
A6H7F2	310	GPN-loop GTPase 2 OS=Bos	yes	no	0.573	0.264	0.384	3e-10
D4A7C0	310	GPN-loop GTPase 2 OS=Ratt	yes	no	0.573	0.264	0.384	3e-10
Q8VEJ1	310	GPN-loop GTPase 2 OS=Mus	yes	no	0.573	0.264	0.362	7e-10
Q6PUR6	311	GPN-loop GTPase 2 OS=Dani	yes	no	0.188	0.086	0.666	9e-09
Q08726	347	GPN-loop GTPase 2 homolog	yes	no	0.223	0.092	0.687	2e-07
Q9UTL7	315	GPN-loop GTPase 2 homolog	yes	no	0.265	0.120	0.605	2e-06

>sp|Q54TE7|GPN2_DICDI GPN-loop GTPase 2 homolog OS=Dictyostelium discoideum GN=gpn2 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 17/110 (15%)

Query: 40  YLQAVHNSACR-----KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIF 94
           YL A  +   R     KL K +  VIED+SLV+F  L+I DK+SVA L+  IDKSNGYI+
Sbjct: 197 YLDAFLDKDPRLKKYSKLNKAIAGVIEDFSLVSFIPLNIMDKKSVANLIASIDKSNGYIY 256

Query: 95  AGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK--DDDDV 142
             +D +     +I  R   W++ +Y          E QEKY K  +DDDV
Sbjct: 257 GSLDTNTA-ILEIQERETQWNFDKY---------QETQEKYYKSYEDDDV 296

Dictyostelium discoideum (taxid: 44689)

>sp|Q4R579|GPN2_MACFA GPN-loop GTPase 2 OS=Macaca fascicularis GN=GPN2 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 9/87 (10%)

Query: 50  RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
           R+L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A 
Sbjct: 219 RQLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFGAQEQRSLEAMMSAA 278

Query: 110 RNVDWDYYRYPSFHLFQSLAEVQEKYI 136
              D        FH F S   +QEKY+
Sbjct: 279 MGAD--------FH-FSSTLGIQEKYL 296

Macaca fascicularis (taxid: 9541)

>sp|Q9H9Y4|GPN2_HUMAN GPN-loop GTPase 2 OS=Homo sapiens GN=GPN2 PE=2 SV=2

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 9/87 (10%)

Query: 50  RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
           R+L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A 
Sbjct: 219 RQLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFRAQEQRSLEAMMSAA 278

Query: 110 RNVDWDYYRYPSFHLFQSLAEVQEKYI 136
              D        FH F S   +QEKY+
Sbjct: 279 MGAD--------FH-FSSTLGIQEKYL 296

Homo sapiens (taxid: 9606)

>sp|Q58DD9|GPN2_PIG GPN-loop GTPase 2 OS=Sus scrofa GN=GPN2 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 9/91 (9%)

Query: 50  RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
           R+L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A 
Sbjct: 219 RQLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFGVQEQRSLEAMMSAA 278

Query: 110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
              D        FH F S   +QEKY+   D
Sbjct: 279 VGAD--------FH-FSSTLGLQEKYLAPSD 300

Sus scrofa (taxid: 9823)

>sp|A6H7F2|GPN2_BOVIN GPN-loop GTPase 2 OS=Bos taurus GN=GPN2 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 9/91 (9%)

Query: 50  RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
           R+L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A 
Sbjct: 219 RQLNEKLVQLIEDYSLVSFIPLNIQDKESIQQVLQAVDKANGYCFGVQEQRSLEAMMSAA 278

Query: 110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
              D        FH F S   +QEKY+   +
Sbjct: 279 MGAD--------FH-FSSTLGLQEKYLAPSE 300

Bos taurus (taxid: 9913)

>sp|D4A7C0|GPN2_RAT GPN-loop GTPase 2 OS=Rattus norvegicus GN=Gpn2 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 9/91 (9%)

Query: 50  RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
           R+L ++L  +IEDYSLV+F  L+IQDK+S+ ++++ +DK+NGY F   +  ++E    A 
Sbjct: 219 RQLNEKLVQLIEDYSLVSFIPLNIQDKDSIQRVLQAVDKANGYCFGVQEQRSLEALMSAA 278

Query: 110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
              D        FH F S   +QEKY+   D
Sbjct: 279 VGAD--------FH-FSSTLGIQEKYLASSD 300

Rattus norvegicus (taxid: 10116)

>sp|Q8VEJ1|GPN2_MOUSE GPN-loop GTPase 2 OS=Mus musculus GN=Gpn2 PE=2 SV=2

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 9/91 (9%)

Query: 50  RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
           R+L ++L  ++EDYSLV+F  L+IQDK+S+ ++++ +DK+NGY F   +  ++E    A 
Sbjct: 219 RQLNEKLVQLVEDYSLVSFIPLNIQDKDSIQRVLQAVDKANGYCFGVQEQRSLEAMMSAA 278

Query: 110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
              D        FH F S   +QEKY+   +
Sbjct: 279 MGAD--------FH-FSSTLGIQEKYLAPSE 300

Mus musculus (taxid: 10090)

>sp|Q6PUR6|GPN2_DANRE GPN-loop GTPase 2 OS=Danio rerio GN=gpn2 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 28/36 (77%)

Query: 3  FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
          FGQVVIGPPGSGKTTYC GM +FLS +G  +   N+
Sbjct: 11 FGQVVIGPPGSGKTTYCRGMQEFLSRLGRKVVIVNL 46

Danio rerio (taxid: 7955)

>sp|Q08726|GPN2_YEAST GPN-loop GTPase 2 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR262W PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query: 1  MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSN 32
          M F Q+VIGPPGSGK+TYCNG SQF + IG +
Sbjct: 1  MPFAQIVIGPPGSGKSTYCNGCSQFFNAIGRH 32

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9UTL7|GPN2_SCHPO GPN-loop GTPase 2 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC144.07c PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 27/38 (71%)

Query: 1  MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
          M F QVV+GPPGSGK+TYC GM Q LS IG +    N+
Sbjct: 1  MPFCQVVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNL 38

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
147785330	320	hypothetical protein VITISV_013941 [Viti	0.671	0.3	0.71	7e-32
356518134	297	PREDICTED: GPN-loop GTPase 2-like [Glyci	0.636	0.306	0.7	1e-29
356509777	301	PREDICTED: GPN-loop GTPase 2-like [Glyci	0.650	0.308	0.666	2e-29
224127260	301	predicted protein [Populus trichocarpa]	0.580	0.275	0.706	3e-29
225458848	320	PREDICTED: GPN-loop GTPase 2-like [Vitis	0.636	0.284	0.68	3e-29
255538048	296	XPA-binding protein, putative [Ricinus c	0.552	0.266	0.784	1e-28
195643230	304	ATP binding domain 1 family member B [Ze	0.629	0.296	0.676	2e-28
242065384	304	hypothetical protein SORBIDRAFT_04g02266	0.629	0.296	0.676	2e-28
212720642	304	uncharacterized protein LOC100192734 [Ze	0.629	0.296	0.676	2e-28
195624910	304	ATP binding domain 1 family member B [Ze	0.629	0.296	0.676	2e-28

>gi|147785330|emb|CAN72850.1| hypothetical protein VITISV_013941 [Vitis vinifera]

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 82/100 (82%), Gaps = 4/100 (4%)

Query: 42  QAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASA 101
           Q   +S  RKLTKELC+VIEDYSLVNF+TLDIQDKESV  LVKLIDKSNGYIFAG++ SA
Sbjct: 206 QDPRSSKYRKLTKELCEVIEDYSLVNFTTLDIQDKESVGNLVKLIDKSNGYIFAGIEGSA 265

Query: 102 VEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIKDDDD 141
           VEFSKIA   +DWDYYRYP    F  +A VQEKY+KD+++
Sbjct: 266 VEFSKIAAGPLDWDYYRYP----FLMVAAVQEKYMKDEEN 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518134|ref|XP_003527737.1| PREDICTED: GPN-loop GTPase 2-like [Glycine max]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 79/100 (79%), Gaps = 9/100 (9%)

Query: 42  QAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASA 101
           Q   ++  RKLTKELCDVIE++SLV+FSTLDIQDKESV  LVKLIDKSNGYIF GM+ SA
Sbjct: 206 QDPRSAKYRKLTKELCDVIENFSLVSFSTLDIQDKESVGNLVKLIDKSNGYIFVGMETSA 265

Query: 102 VEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIKDDDD 141
           VEFSKIAV  VDWDYYR         +A VQEKY+KDDD+
Sbjct: 266 VEFSKIAVGPVDWDYYR---------VAAVQEKYMKDDDN 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509777|ref|XP_003523622.1| PREDICTED: GPN-loop GTPase 2-like [Glycine max]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 82/102 (80%), Gaps = 9/102 (8%)

Query: 42  QAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASA 101
           Q   ++  RKLTKELCD+IE++SLV+FSTLDIQDKESV  LVKLIDKSNGYIF GM+ASA
Sbjct: 206 QDPRSAKYRKLTKELCDIIENFSLVSFSTLDIQDKESVGNLVKLIDKSNGYIFVGMEASA 265

Query: 102 VEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIKDDDDVN 143
           VEFSKIAV  V+WDYYR         +A VQEKY+KDD++++
Sbjct: 266 VEFSKIAVGPVNWDYYR---------VAAVQEKYMKDDENID 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127260|ref|XP_002320027.1| predicted protein [Populus trichocarpa] gi|222860800|gb|EEE98342.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 79/92 (85%), Gaps = 9/92 (9%)

Query: 50  RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
           RKLTKELCDV++D+SLV+F+TLDIQDKESV  LVKLID++NGYIFAG+++SAVEFSKIAV
Sbjct: 214 RKLTKELCDVVQDFSLVDFTTLDIQDKESVGNLVKLIDRTNGYIFAGVESSAVEFSKIAV 273

Query: 110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDDDD 141
           R VDWDYYR         +A VQEKY+KDD++
Sbjct: 274 RPVDWDYYR---------VAAVQEKYMKDDEN 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458848|ref|XP_002283335.1| PREDICTED: GPN-loop GTPase 2-like [Vitis vinifera]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 79/100 (79%), Gaps = 9/100 (9%)

Query: 42  QAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASA 101
           Q   +S  RKLTKELC+VIEDYSLVNF+TLDIQDKESV  LVKLIDKSNGYIFAG++ SA
Sbjct: 206 QDPRSSKYRKLTKELCEVIEDYSLVNFTTLDIQDKESVGNLVKLIDKSNGYIFAGIEGSA 265

Query: 102 VEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIKDDDD 141
           VEFSKIA   +DWDYYR         +A VQEKY+KD+++
Sbjct: 266 VEFSKIAAGPLDWDYYR---------VAAVQEKYMKDEEN 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538048|ref|XP_002510089.1| XPA-binding protein, putative [Ricinus communis] gi|223550790|gb|EEF52276.1| XPA-binding protein, putative [Ricinus communis]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 71/79 (89%)

Query: 42  QAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASA 101
           Q   ++  RKLTKELC+VIEDYSLV+F+TLDIQDKESV  LVKLIDK+NGYIFAG++ASA
Sbjct: 206 QDPRSAKYRKLTKELCEVIEDYSLVDFTTLDIQDKESVGNLVKLIDKTNGYIFAGVEASA 265

Query: 102 VEFSKIAVRNVDWDYYRYP 120
           VEFSK+AVR VDWDYYRYP
Sbjct: 266 VEFSKLAVRPVDWDYYRYP 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195643230|gb|ACG41083.1| ATP binding domain 1 family member B [Zea mays]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 77/99 (77%), Gaps = 9/99 (9%)

Query: 42  QAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASA 101
           Q   ++  RKLTKELCDVI+D+ LVNFSTLDIQDKESV  LVKLIDKSNGYIF+ +D+SA
Sbjct: 206 QDPRSAKYRKLTKELCDVIDDFGLVNFSTLDIQDKESVGNLVKLIDKSNGYIFSSIDSSA 265

Query: 102 VEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
           VEFSKIA   +DWDYYR          AEVQEKY+KDD+
Sbjct: 266 VEFSKIAAAPLDWDYYR---------TAEVQEKYMKDDE 295

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242065384|ref|XP_002453981.1| hypothetical protein SORBIDRAFT_04g022660 [Sorghum bicolor] gi|241933812|gb|EES06957.1| hypothetical protein SORBIDRAFT_04g022660 [Sorghum bicolor]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 77/99 (77%), Gaps = 9/99 (9%)

Query: 42  QAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASA 101
           Q   ++  RKLTKELCDVI+D+SLVNFSTLDIQDKESV  LVKLIDKSNGYIF+ +D+SA
Sbjct: 206 QDPRSAKYRKLTKELCDVIDDFSLVNFSTLDIQDKESVGNLVKLIDKSNGYIFSSIDSSA 265

Query: 102 VEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
           VEFSKIA   +DWDYYR           EVQEKY+KDD+
Sbjct: 266 VEFSKIAAAPLDWDYYR---------TGEVQEKYMKDDE 295

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212720642|ref|NP_001131405.1| uncharacterized protein LOC100192734 [Zea mays] gi|194691438|gb|ACF79803.1| unknown [Zea mays] gi|413937250|gb|AFW71801.1| ATP binding domain 1 family member B isoform 1 [Zea mays] gi|413937251|gb|AFW71802.1| ATP binding domain 1 family member B isoform 2 [Zea mays]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 77/99 (77%), Gaps = 9/99 (9%)

Query: 42  QAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASA 101
           Q   ++  RKLTKELCDVI+D+ LVNFSTLDIQDKESV  LVKLIDKSNGYIF+ +D+SA
Sbjct: 206 QDPRSAKYRKLTKELCDVIDDFGLVNFSTLDIQDKESVGNLVKLIDKSNGYIFSSIDSSA 265

Query: 102 VEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
           VEFSKIA   +DWDYYR          AEVQEKY+KDD+
Sbjct: 266 VEFSKIAAAPLDWDYYR---------TAEVQEKYMKDDE 295

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195624910|gb|ACG34285.1| ATP binding domain 1 family member B [Zea mays]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 77/99 (77%), Gaps = 9/99 (9%)

Query: 42  QAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASA 101
           Q   ++  RKLTKELCDVI+D+ LVNFSTLDIQDKESV  LVKLIDKSNGYIF+ +D+SA
Sbjct: 206 QDPRSAKYRKLTKELCDVIDDFGLVNFSTLDIQDKESVGNLVKLIDKSNGYIFSSIDSSA 265

Query: 102 VEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
           VEFSKIA   +DWDYYR          AEVQEKY+KDD+
Sbjct: 266 VEFSKIAAAPLDWDYYR---------TAEVQEKYMKDDE 295

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2176357	298	QQT1 "QUATRE-QUART 1" [Arabido	0.573	0.275	0.703	1e-27
DICTYBASE|DDB_G0281787	315	gpn2 "GPN-loop GTPase 2" [Dict	0.573	0.260	0.446	1.7e-26
UNIPROTKB|E2QT70	310	GPN2 "Uncharacterized protein"	0.573	0.264	0.395	1.3e-22
UNIPROTKB|F6UWV4	310	GPN2 "Uncharacterized protein"	0.573	0.264	0.395	1.3e-22
UNIPROTKB|Q9H9Y4	310	GPN2 "GPN-loop GTPase 2" [Homo	0.545	0.251	0.402	1.3e-22
UNIPROTKB|Q58DD9	310	GPN2 "GPN-loop GTPase 2" [Sus	0.573	0.264	0.395	2.3e-22
RGD|1311749	310	Gpn2 "GPN-loop GTPase 2" [Ratt	0.573	0.264	0.384	3e-22
UNIPROTKB|A6H7F2	310	GPN2 "GPN-loop GTPase 2" [Bos	0.545	0.251	0.402	5e-22
MGI|MGI:2140368	310	Gpn2 "GPN-loop GTPase 2" [Mus	0.545	0.251	0.379	6.6e-22
ZFIN|ZDB-GENE-041010-86	311	gpn2 "GPN-loop GTPase 2" [Dani	0.251	0.115	0.666	1.4e-20

TAIR|locus:2176357 QQT1 "QUATRE-QUART 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 64/91 (70%), Positives = 73/91 (80%)

Query:    50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
             RKLTKELC VIEDYSLVNF+TLDIQDKESV  LVKLIDKSNGYIFAG+DAS VE+SKIA+
Sbjct:   214 RKLTKELCSVIEDYSLVNFTTLDIQDKESVGDLVKLIDKSNGYIFAGIDASVVEYSKIAI 273

Query:   110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
                DWDY R         +A VQEKY++D++
Sbjct:   274 GQTDWDYNR---------VAAVQEKYMEDEE 295

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0005874 "microtubule" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

DICTYBASE|DDB_G0281787 gpn2 "GPN-loop GTPase 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 178 (67.7 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
 Identities = 42/94 (44%), Positives = 56/94 (59%)

Query:    51 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 110
             KL K +  VIED+SLV+F  L+I DK+SVA L+  IDKSNGYI+  +D +     +I  R
Sbjct:   213 KLNKAIAGVIEDFSLVSFIPLNIMDKKSVANLIASIDKSNGYIYGSLDTNTA-ILEIQER 271

Query:   111 NVDWDYYRYPSFHLFQSLAEVQEKYIK--DDDDV 142
                W++ +Y          E QEKY K  +DDDV
Sbjct:   272 ETQWNFDKYQ---------ETQEKYYKSYEDDDV 296

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|E2QT70 GPN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
 Identities = 36/91 (39%), Positives = 54/91 (59%)

Query:    50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
             R+L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A 
Sbjct:   219 RQLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFGIQEQRSLEAMMSAA 278

Query:   110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
                D        FH F S   +QEKY+   D
Sbjct:   279 MGAD--------FH-FSSTLGIQEKYLAPPD 300

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F6UWV4 GPN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
 Identities = 36/91 (39%), Positives = 54/91 (59%)

Query:    50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
             R+L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A 
Sbjct:   219 RQLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFGIQEQRSLEAMMSAA 278

Query:   110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
                D        FH F S   +QEKY+   D
Sbjct:   279 MGAD--------FH-FSSTLGIQEKYLAPPD 300

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q9H9Y4 GPN2 "GPN-loop GTPase 2" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
 Identities = 35/87 (40%), Positives = 53/87 (60%)

Query:    50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
             R+L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A 
Sbjct:   219 RQLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFRAQEQRSLEAMMSAA 278

Query:   110 RNVDWDYYRYPSFHLFQSLAEVQEKYI 136
                D        FH F S   +QEKY+
Sbjct:   279 MGAD--------FH-FSSTLGIQEKYL 296

GO:0005525 "GTP binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q58DD9 GPN2 "GPN-loop GTPase 2" [Sus scrofa (taxid:9823)]

 Score = 155 (59.6 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
 Identities = 36/91 (39%), Positives = 54/91 (59%)

Query:    50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
             R+L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A 
Sbjct:   219 RQLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFGVQEQRSLEAMMSAA 278

Query:   110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
                D        FH F S   +QEKY+   D
Sbjct:   279 VGAD--------FH-FSSTLGLQEKYLAPSD 300

GO:0005525 "GTP binding" evidence=IEA

RGD|1311749 Gpn2 "GPN-loop GTPase 2" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
 Identities = 35/91 (38%), Positives = 54/91 (59%)

Query:    50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
             R+L ++L  +IEDYSLV+F  L+IQDK+S+ ++++ +DK+NGY F   +  ++E    A 
Sbjct:   219 RQLNEKLVQLIEDYSLVSFIPLNIQDKDSIQRVLQAVDKANGYCFGVQEQRSLEALMSAA 278

Query:   110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
                D        FH F S   +QEKY+   D
Sbjct:   279 VGAD--------FH-FSSTLGIQEKYLASSD 300

GO:0003674 "molecular_function" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A6H7F2 GPN2 "GPN-loop GTPase 2" [Bos taurus (taxid:9913)]

 Score = 152 (58.6 bits), Expect = 5.0e-22, Sum P(2) = 5.0e-22
 Identities = 35/87 (40%), Positives = 53/87 (60%)

Query:    50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
             R+L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A 
Sbjct:   219 RQLNEKLVQLIEDYSLVSFIPLNIQDKESIQQVLQAVDKANGYCFGVQEQRSLEAMMSAA 278

Query:   110 RNVDWDYYRYPSFHLFQSLAEVQEKYI 136
                D        FH F S   +QEKY+
Sbjct:   279 MGAD--------FH-FSSTLGLQEKYL 296

GO:0005525 "GTP binding" evidence=IEA

MGI|MGI:2140368 Gpn2 "GPN-loop GTPase 2" [Mus musculus (taxid:10090)]

 Score = 151 (58.2 bits), Expect = 6.6e-22, Sum P(2) = 6.6e-22
 Identities = 33/87 (37%), Positives = 53/87 (60%)

Query:    50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
             R+L ++L  ++EDYSLV+F  L+IQDK+S+ ++++ +DK+NGY F   +  ++E    A 
Sbjct:   219 RQLNEKLVQLVEDYSLVSFIPLNIQDKDSIQRVLQAVDKANGYCFGVQEQRSLEAMMSAA 278

Query:   110 RNVDWDYYRYPSFHLFQSLAEVQEKYI 136
                D        FH F S   +QEKY+
Sbjct:   279 MGAD--------FH-FSSTLGIQEKYL 296

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-041010-86 gpn2 "GPN-loop GTPase 2" [Danio rerio (taxid:7955)]

 Score = 134 (52.2 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 24/36 (66%), Positives = 28/36 (77%)

Query:     3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
             FGQVVIGPPGSGKTTYC GM +FLS +G  +   N+
Sbjct:    11 FGQVVIGPPGSGKTTYCRGMQEFLSRLGRKVVIVNL 46

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XIV0586	hypothetical protein (301 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00101416	hypothetical protein (399 aa)			•		•		•	•	0.448
	eugene3.00080964	hypothetical protein (407 aa)			•		•		•	•	0.440

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
pfam03029	235	pfam03029, ATP_bind_1, Conserved hypothetical ATP	4e-07
pfam03029	235	pfam03029, ATP_bind_1, Conserved hypothetical ATP	2e-04
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	0.002
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	0.004

>gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 7  VIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37
          V+GP GSGKTT+   +S+ L L+G ++   N
Sbjct: 1  VVGPAGSGKTTFVGALSEILPLLGRSVYVVN 31

Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity. Length = 235

>gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 37  NVFYLQAVHNSACRKLTKELCDVIEDYSLV-NFSTLDIQDKESVAKLVKLIDKSNGY 92
           +   LQ +      KL + + + ++ + LV  F     +  ES+  L+ LID++  Y
Sbjct: 179 DPDDLQLLLELDPSKLNEAIREALDLFYLVPRFLPDARETGESMEDLLTLIDEALQY 235

Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity. Length = 235

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 30/123 (24%)

Query: 6   VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY-- 63
           +++GPPGSGK T    +++   L   +I   ++                EL    ++Y  
Sbjct: 3   LLLGPPGSGKGTQAERLAKKYGLP--HISTGDLL-------REEIASGTELGKKAKEYID 53

Query: 64  --SLVNFSTLDIQDKESVAKLVK----LIDKSNGYIFAG----MDASAVEFSKIAVRNVD 113
              LV          E V KL+K      D   G+I  G    +D  A    ++    + 
Sbjct: 54  SGKLV--------PDEIVIKLLKERLKKPDCKKGFILDGFPRTVD-QAEALDELLDEGIK 104

Query: 114 WDY 116
            D 
Sbjct: 105 PDK 107

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 37/95 (38%)

Query: 4  GQVVI--GPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIE 61
          G++VI  GP GSGKTT        L+LIG          L++V   + + L +EL     
Sbjct: 31 GEIVILTGPSGSGKTT-------LLTLIGG---------LRSVQEGSLKVLGQELYGA-- 72

Query: 62 DYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAG 96
                          S  +LV+ + ++ GYIF  
Sbjct: 73 ----------------SEKELVQ-LRRNIGYIFQA 90

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	99.98
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.98
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.98
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.98
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.97
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.97
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.97
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.97
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.97
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.97
COG4559	259	ABC-type hemin transport system, ATPase component	99.97
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.97
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.97
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.97
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.97
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.97
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.97
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.97
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.97
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.97
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.97
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.97
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.97
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.97
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.97
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.97
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.97
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.97
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.97
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.97
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.97
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.97
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.97
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.97
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.97
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.97
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.97
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.97
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.97
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.97
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.97
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.97
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.97
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.97
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.97
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.97
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.97
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.97
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.97
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.97
PRK10908	222	cell division protein FtsE; Provisional	99.97
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.97
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.97
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.97
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.97
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.97
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.97
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.97
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.96
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.96
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.96
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.96
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.96
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.96
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.96
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.96
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.96
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.96
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.96
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.96
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.96
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.96
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.96
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.96
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.96
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.96
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.96
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.96
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.96
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.96
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.96
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.96
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.96
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.96
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.96
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.96
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.96
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.96
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.96
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.96
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.96
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.96
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.96
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.96
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.96
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.96
cd03246	173	ABCC_Protease_Secretion This family represents the	99.96
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.96
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.96
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.96
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.96
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.96
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.96
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.96
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.96
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.96
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.96
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.96
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.96
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.96
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.96
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.96
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.96
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.96
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.96
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.96
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.96
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.96
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.96
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.96
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.96
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.96
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.96
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.96
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.96
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.96
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.96
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.96
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.96
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.96
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.96
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.96
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.96
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.96
COG4988	559	CydD ABC-type transport system involved in cytochr	99.96
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.96
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.96
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.96
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.96
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.96
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.96
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.96
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.96
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.96
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.96
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.96
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.96
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.96
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.96
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.96
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.96
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.96
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.96
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.96
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.96
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.96
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.96
COG1123	539	ATPase components of various ABC-type transport sy	99.96
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.96
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.95
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.95
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.95
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.95
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.95
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.95
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.95
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.95
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.95
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.95
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.95
PRK10938	490	putative molybdenum transport ATP-binding protein	99.95
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.95
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.95
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.95
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.95
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.95
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.95
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.95
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.95
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.95
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.95
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.95
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.95
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.95
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.95
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.95
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.95
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.95
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.95
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.95
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.95
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.95
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.95
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.95
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.95
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.95
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.95
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.95
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.95
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.95
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.95
PLN03232	1495	ABC transporter C family member; Provisional	99.95
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.95
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.95
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.95
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.95
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.95
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.95
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.95
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.95
PLN03130	1622	ABC transporter C family member; Provisional	99.95
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.95
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.95
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.95
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.95
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.95
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.95
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.95
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.95
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.95
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.94
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.94
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.94
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.94
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.94
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.94
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.94
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.94
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.94
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.94
PTZ00243	1560	ABC transporter; Provisional	99.94
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.94
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.94
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.94
COG4987	573	CydC ABC-type transport system involved in cytochr	99.94
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.94
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.94
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.94
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.94
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.94
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.94
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.94
PRK10938	490	putative molybdenum transport ATP-binding protein	99.94
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.94
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.94
COG4172	534	ABC-type uncharacterized transport system, duplica	99.94
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.94
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.94
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.94
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.93
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.93
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.93
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.93
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.93
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.93
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.93
COG1123	539	ATPase components of various ABC-type transport sy	99.93
PLN03211	659	ABC transporter G-25; Provisional	99.93
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.93
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.93
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.93
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.93
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.93
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.93
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.92
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.92
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.92
PRK13409	590	putative ATPase RIL; Provisional	99.92
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.92
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.92
PRK13409	590	putative ATPase RIL; Provisional	99.92
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.92
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.92
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.92
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.92
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.92
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.92
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.91
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.91
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.91
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.91
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.91
PLN03073	718	ABC transporter F family; Provisional	99.91
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.91
PRK11147	635	ABC transporter ATPase component; Reviewed	99.9
PRK11147	635	ABC transporter ATPase component; Reviewed	99.9
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.9
PLN03140	1470	ABC transporter G family member; Provisional	99.9
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.9
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.9
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.9
PLN03130	1622	ABC transporter C family member; Provisional	99.9
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.89
PLN03232	1495	ABC transporter C family member; Provisional	99.89
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.89
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.89
PLN03140	1470	ABC transporter G family member; Provisional	99.89
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.89
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.89
PTZ00243	1560	ABC transporter; Provisional	99.88
COG0488	530	Uup ATPase components of ABC transporters with dup	99.88
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.88
COG4172	534	ABC-type uncharacterized transport system, duplica	99.87
PLN03073	718	ABC transporter F family; Provisional	99.87
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.87
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.85
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.84
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.83
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.83
COG0488	530	Uup ATPase components of ABC transporters with dup	99.82
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.82
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.81
COG4178	604	ABC-type uncharacterized transport system, permeas	99.8
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.78
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.78
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.78
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.75
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.73
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.73
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.72
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.72
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.68
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.67
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.66
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.65
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.65
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.64
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.57
KOG0062	582	consensus ATPase component of ABC transporters wit	99.56
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.55
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.48
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.48
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.47
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.45
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.44
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.43
KOG0062	582	consensus ATPase component of ABC transporters wit	99.4
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.39
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.37
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.36
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.35
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.34
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.34
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.33
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.31
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.29
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.26
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.25
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.24
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.22
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.22
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.21
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.2
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.13
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.1
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.03
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.99
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.99
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.93
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.83
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.83
cd01128	249	rho_factor Transcription termination factor rho is	98.81
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.78
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.78
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.76
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.76
PRK09825	176	idnK D-gluconate kinase; Provisional	98.76
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.75
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.75
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.73
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.72
PLN02796	347	D-glycerate 3-kinase	98.7
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.69
PRK00300	205	gmk guanylate kinase; Provisional	98.66
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.65
smart00382	148	AAA ATPases associated with a variety of cellular	98.65
PLN03046	460	D-glycerate 3-kinase; Provisional	98.58
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.57
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.56
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.54
PRK01889	356	GTPase RsgA; Reviewed	98.54
PRK10416	318	signal recognition particle-docking protein FtsY;	98.53
PLN02318	656	phosphoribulokinase/uridine kinase	98.53
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.51
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.5
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.48
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.44
PRK07429	327	phosphoribulokinase; Provisional	98.44
PRK03846	198	adenylylsulfate kinase; Provisional	98.43
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.43
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.43
PRK13695	174	putative NTPase; Provisional	98.41
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.41
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.4
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.4
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	98.39
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.39
PRK11545	163	gntK gluconate kinase 1; Provisional	98.39
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.39
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.38
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.37
PRK08149	428	ATP synthase SpaL; Validated	98.36
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.36
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.34
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.33
PRK05480	209	uridine/cytidine kinase; Provisional	98.33
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.29
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.29
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.29
PRK00098	298	GTPase RsgA; Reviewed	98.29
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.29
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.29
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.25
PRK04863	1486	mukB cell division protein MukB; Provisional	98.25
PRK09862	506	putative ATP-dependent protease; Provisional	98.25
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.24
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.24
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.24
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.2
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.2
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.2
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.18
PRK13851	344	type IV secretion system protein VirB11; Provision	98.17
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.17
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	98.16
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.14
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.14
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	98.14
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.13
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.11
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.09
TIGR03819	340	heli_sec_ATPase helicase/secretion neighborhood AT	98.08
PRK05922	434	type III secretion system ATPase; Validated	98.08
PRK09099	441	type III secretion system ATPase; Provisional	98.08
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.08
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.07
PRK05541	176	adenylylsulfate kinase; Provisional	98.07
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.07
PRK07261	171	topology modulation protein; Provisional	98.06
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.05
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	98.05

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=7.6e-41  Score=240.34  Aligned_cols=126  Identities=17%  Similarity=0.184  Sum_probs=107.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      ++.++|+||||||||||||||+++..|++|+|.++|..+..   ......+|+++|+|||+++|||+.+.          
T Consensus        28 Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~---~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~  104 (240)
T COG1126          28 GEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGD---KKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK  104 (240)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccc---hhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence            46789999999999999999999999999999999964321   12667899999999999999987642          


Q ss_pred             -----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           72 -----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        72 -----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                           ..+..+.+.++|++++++   +.|+  +||||||||+||||||.+|+++|+|   ||||-||++-+.
T Consensus       105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD---EPTSALDPElv~  173 (240)
T COG1126         105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD---EPTSALDPELVG  173 (240)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec---CCcccCCHHHHH
Confidence                 234567788889998874   5666  7999999999999999999999999   999999998665

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=5.6e-39  Score=238.38  Aligned_cols=129  Identities=16%  Similarity=0.162  Sum_probs=111.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc--------------c
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV--------------N   67 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~--------------~   67 (143)
                      +..++|+||||||||||||+|+|+++|.+|+|+++|+    ++..++.++++++++||||.+...              +
T Consensus        28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~----~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p  103 (258)
T COG1120          28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK----DIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYP  103 (258)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCC----chhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCc
Confidence            4678999999999999999999999999999999997    678889999999999999996421              1


Q ss_pred             ----cccCChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336           68 ----FSTLDIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK  137 (143)
Q Consensus        68 ----~~~~~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~  137 (143)
                          +...+++|.+.+.++|+.+++   +.+.+  +||||||||.|||||||+|++||||   |||+-||...|-+.++
T Consensus       104 ~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLD---EPTs~LDi~~Q~evl~  179 (258)
T COG1120         104 HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLD---EPTSHLDIAHQIEVLE  179 (258)
T ss_pred             ccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeC---CCccccCHHHHHHHHH
Confidence                223456777889999999876   45555  7999999999999999999999999   9999999998876653

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.3e-38  Score=228.60  Aligned_cols=133  Identities=17%  Similarity=0.215  Sum_probs=113.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc--------------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN--------------   67 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~--------------   67 (143)
                      ++.++||||||||||||||+|+|+.+|++|+|.++|..+. .+.....+++|+++||+||.++|++              
T Consensus        30 GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~-~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~  108 (258)
T COG3638          30 GEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQIT-KLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG  108 (258)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchh-ccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence            5789999999999999999999999999999999996332 2344456778899999999999762              


Q ss_pred             --------cccCChhhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           68 --------FSTLDIQDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        68 --------~~~~~~~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                              |..+++++...+.++|+++|+.   .+.  -+||||||||+|||||+++|+++|-|   ||++.||....++
T Consensus       109 ~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILAD---EPvasLDp~~a~~  185 (258)
T COG3638         109 YTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILAD---EPVASLDPESAKK  185 (258)
T ss_pred             cchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecC---CcccccChhhHHH
Confidence                    2235678888999999999874   222  27999999999999999999999999   9999999999998


Q ss_pred             ccCC
Q 032336          135 YIKD  138 (143)
Q Consensus       135 ~~~~  138 (143)
                      .|+.
T Consensus       186 Vm~~  189 (258)
T COG3638         186 VMDI  189 (258)
T ss_pred             HHHH
Confidence            7763

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=5.3e-37  Score=225.23  Aligned_cols=127  Identities=18%  Similarity=0.189  Sum_probs=110.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      ++.++++|||||||||+||+|++++.|++|+|+++|.    ++...+..++|++||||.|...|||+.++          
T Consensus        27 gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~----~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L  102 (309)
T COG1125          27 GEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGE----DISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL  102 (309)
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCe----ecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhh
Confidence            4678999999999999999999999999999999997    66778888999999999999999987642          


Q ss_pred             ---Ch-hhHHHHHHHHHHhhh-----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---DI-QDKESVAKLVKLIDK-----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~~-~~~~~~~~~l~~l~~-----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         .+ +-.++++++|+.+++     .++|+  +||||||||.+|||||.+|+++|||   |||+-+|.-+.++.
T Consensus       103 ~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD---EPFgALDpI~R~~l  174 (309)
T COG1125         103 LGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD---EPFGALDPITRKQL  174 (309)
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec---CCccccChhhHHHH
Confidence               22 335678899999876     35666  7999999999999999999999999   99999998776654

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5e-37  Score=225.09  Aligned_cols=122  Identities=15%  Similarity=0.153  Sum_probs=103.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      ++.++|+||||||||||||+|+|+.+|++|+|.++|..    +.     .....++||||++.|+|+.++          
T Consensus        29 GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~----v~-----~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~   99 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRP----VT-----GPGPDIGYVFQEDALLPWLTVLDNVALGLEL   99 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcc----cC-----CCCCCEEEEeccCcccchhhHHhhheehhhc
Confidence            57899999999999999999999999999999999962    21     123569999999999876542          


Q ss_pred             ----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          ..+..+++.++|+.+++.   +.|+  +|||+||||+|||||+.+|++||||   |||+-||..+.+++
T Consensus       100 ~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlD---EPFgALDalTR~~l  169 (248)
T COG1116         100 RGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLD---EPFGALDALTREEL  169 (248)
T ss_pred             cccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEc---CCcchhhHHHHHHH
Confidence                123456789999999874   6666  7999999999999999999999999   99999999887754

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.5e-36  Score=226.65  Aligned_cols=131  Identities=17%  Similarity=0.184  Sum_probs=112.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +...||||.||||||||+||++++.+|++|+|.++|.++. .+.....+..|++||++||+++|+...+           
T Consensus        32 GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~-~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei  110 (339)
T COG1135          32 GEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLT-ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL  110 (339)
T ss_pred             CcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecc-cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence            4578999999999999999999999999999999997554 4667777889999999999999874221           


Q ss_pred             --C-ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 --L-DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 --~-~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                        . ..+-.+++.++|+.+++.   +.|+  +||||||||+||||||.+|++||.|   ||||-||+++..++.
T Consensus       111 ag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~D---EaTSALDP~TT~sIL  181 (339)
T COG1135         111 AGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCD---EATSALDPETTQSIL  181 (339)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEec---CccccCChHHHHHHH
Confidence              1 234457889999999874   6666  7999999999999999999999999   999999999988764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=3.8e-36  Score=219.43  Aligned_cols=131  Identities=15%  Similarity=0.138  Sum_probs=104.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH-HhhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      ++.++|+|||||||||||++|.|+.+|++|.|+++|.++. .+........ +++||||||+++|++..+.         
T Consensus        31 Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~-~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~  109 (226)
T COG1136          31 GEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLT-KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL  109 (226)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcC-cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence            5689999999999999999999999999999999997443 2333233333 4679999999998754431         


Q ss_pred             ----Ch-hhHHHHHHHHHHhhhh---C-CCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           72 ----DI-QDKESVAKLVKLIDKS---N-GYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        72 ----~~-~~~~~~~~~l~~l~~~---~-~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                          .. ...+.++++++.+++.   . .++  +||||||||+|||||+.+|+++|.|   |||..||..+.+..+
T Consensus       110 ~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilAD---EPTgnLD~~t~~~V~  182 (226)
T COG1136         110 IAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILAD---EPTGNLDSKTAKEVL  182 (226)
T ss_pred             HcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEee---CccccCChHHHHHHH
Confidence                11 2355677788887764   2 444  7999999999999999999999999   999999998887654

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-36  Score=224.17  Aligned_cols=125  Identities=19%  Similarity=0.174  Sum_probs=101.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc---------------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV---------------   66 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~---------------   66 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|.    +....   .-+.+||||||...+-               
T Consensus        30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~----~~~~~---~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~  102 (254)
T COG1121          30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGK----PVRKR---RKRLRIGYVPQKSSVDRSFPITVKDVVLLGR  102 (254)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccc----ccccc---ccCCeEEEcCcccccCCCCCcCHHHHHHccC
Confidence            4578999999999999999999999999999999985    22111   1135799999975421               


Q ss_pred             -----ccccCChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           67 -----NFSTLDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        67 -----~~~~~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                           ++....+++.+.++++|+++++.   ++.+  +||||+|||.|||||+++|++|+||   ||++..|...+..+.
T Consensus       103 ~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD---EP~~gvD~~~~~~i~  179 (254)
T COG1121         103 YGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD---EPFTGVDVAGQKEIY  179 (254)
T ss_pred             cccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec---CCcccCCHHHHHHHH
Confidence                 12234556788999999999874   4444  7999999999999999999999999   999999998887553

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.9e-36  Score=230.09  Aligned_cols=123  Identities=19%  Similarity=0.180  Sum_probs=103.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      ++.++|+||||||||||||+|+|+.+|++|+|+++|.    ++...++  ..|.|++|||++.|||++++          
T Consensus        29 Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~----~vt~l~P--~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~  102 (338)
T COG3839          29 GEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGR----DVTDLPP--EKRGIAMVFQNYALYPHMTVYENIAFGLKL  102 (338)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE----ECCCCCh--hHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence            4678999999999999999999999999999999997    3444444  34779999999999987642          


Q ss_pred             ----ChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           72 ----DIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        72 ----~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                          ..+...+++++.+.+++   .++++  +||||||||++|||++.+|+++|+|   ||+++||.....
T Consensus       103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D---EPlSnLDa~lR~  170 (338)
T COG3839         103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD---EPLSNLDAKLRV  170 (338)
T ss_pred             CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec---CchhHhhHHHHH
Confidence                12345678888888875   46655  7999999999999999999999999   999999987665

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=4.9e-36  Score=231.13  Aligned_cols=125  Identities=18%  Similarity=0.164  Sum_probs=104.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD---------   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~---------   72 (143)
                      ++.++|+||||||||||||+|+|+..|++|+|.++|+++    ...++  -+|.|++|||++.|||++++.         
T Consensus        31 Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i----~~lpp--~kR~ig~VFQ~YALFPHltV~~NVafGLk~  104 (352)
T COG3842          31 GEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDI----TDVPP--EKRPIGMVFQSYALFPHMTVEENVAFGLKV  104 (352)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC----CCCCh--hhcccceeecCcccCCCCcHHHHhhhhhhh
Confidence            467899999999999999999999999999999999843    43333  346799999999999876531         


Q ss_pred             ------hhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           73 ------IQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 ------~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                            .+..+++.++++.+++   +.+++  +||||||||++||||+.+|++||||   ||++.||....+.+
T Consensus       105 ~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLD---EPlSaLD~kLR~~m  175 (352)
T COG3842         105 RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLD---EPLSALDAKLREQM  175 (352)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhc---CcccchhHHHHHHH
Confidence                  1234688889998876   35555  7999999999999999999999999   99999998877643

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=5.6e-35  Score=206.44  Aligned_cols=131  Identities=13%  Similarity=0.085  Sum_probs=109.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      ++.+.|+||||||||||+|+|.+..+|++|+|+++|.++. .+......-+|++||+|||++.|.+..++          
T Consensus        28 Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~-~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v  106 (223)
T COG2884          28 GEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLS-RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV  106 (223)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecc-cccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence            4678899999999999999999999999999999997554 45555667789999999999987643221          


Q ss_pred             ----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           72 ----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        72 ----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                          ..+-.+++.++|+++++.   +..+  +||||||||+||||++.+|++|+-|   ||+-++|......+|
T Consensus       107 ~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlAD---EPTGNLDp~~s~~im  177 (223)
T COG2884         107 IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD---EPTGNLDPDLSWEIM  177 (223)
T ss_pred             cCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeec---CCCCCCChHHHHHHH
Confidence                123456788899999874   2333  7999999999999999999999999   999999999887665

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-34  Score=207.05  Aligned_cols=128  Identities=14%  Similarity=0.060  Sum_probs=102.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCC-----ceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-------
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIG-----SNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-------   70 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~-----G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-------   70 (143)
                      ..+|||||||||||||||+++++.....     |+|.++|+++..  ...+.-++|+++|+|||.|+.|+..-       
T Consensus        34 ~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~--~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG  111 (253)
T COG1117          34 KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD--PKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG  111 (253)
T ss_pred             ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC--CCCCHHHHHHHheeeccCCCCCCchHHHHHHHh
Confidence            4689999999999999999999987764     999999986543  24567889999999999999886321       


Q ss_pred             ------CChhhHHHHHHHHHHhhhh---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ------LDIQDKESVAKLVKLIDKS---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ------~~~~~~~~~~~~l~~l~~~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                            ..++-.+.++..|+...+.         ....+|||||||++||||+|.+|++||||   ||+|-||+....|+
T Consensus       112 ~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmD---EPtSALDPIsT~kI  188 (253)
T COG1117         112 LRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMD---EPTSALDPISTLKI  188 (253)
T ss_pred             HHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEec---CcccccCchhHHHH
Confidence                  1123345677777766542         33347999999999999999999999999   99999998776654

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-34  Score=217.59  Aligned_cols=126  Identities=17%  Similarity=0.191  Sum_probs=103.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      ++-+||+||||||||||||+|+|+..|++|.|.++|+.+. +...  .....++||||||++.+|+++++          
T Consensus        28 Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~-D~~~--~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~  104 (345)
T COG1118          28 GELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLF-DVSN--LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKV  104 (345)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEecc-chhc--cchhhcceeEEEechhhcccchHHhhhhhcccc
Confidence            4578999999999999999999999999999999996332 2222  23445779999999999876542          


Q ss_pred             ------ChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           72 ------DIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        72 ------~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                            ..+...++.++|+.+.+   +++|+  +||||+|||++|||||.+|++||||   ||+..+|.....
T Consensus       105 ~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLD---EPf~ALDa~vr~  174 (345)
T COG1118         105 RKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLD---EPFGALDAKVRK  174 (345)
T ss_pred             cccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeec---CCchhhhHHHHH
Confidence                  12445678888888754   57887  6999999999999999999999999   999999887655

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.9e-33  Score=203.54  Aligned_cols=128  Identities=12%  Similarity=0.066  Sum_probs=101.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc--cccccC--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL--VNFSTL--------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l--~~~~~~--------   71 (143)
                      ++.++|+|+||||||||.++|+|+.+|++|+|.++|....   .....+..++.+.+|||+|.-  .|..++        
T Consensus        33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~---~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl  109 (252)
T COG1124          33 GETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLA---PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPL  109 (252)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccC---ccccchhhccceeEEecCCccccCcchhHHHHHhhhh
Confidence            4678999999999999999999999999999999995221   122223567789999999862  222211        


Q ss_pred             ----ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ----DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ----~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          ..+...++.++++.+++.    .+++  +||||+|||+|||||+.+|++|++|   ||++.||..+|..+
T Consensus       110 ~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlD---EptSaLD~siQa~I  180 (252)
T COG1124         110 RPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILD---EPTSALDVSVQAQI  180 (252)
T ss_pred             ccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEec---CchhhhcHHHHHHH
Confidence                112234488899999873    4555  7999999999999999999999999   99999999998754

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.1e-33  Score=215.65  Aligned_cols=131  Identities=15%  Similarity=0.148  Sum_probs=103.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..+. .+.....+..++.|+|+||++.+++..+           
T Consensus        31 Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~-~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~  109 (343)
T TIGR02314        31 GQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLT-TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL  109 (343)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC-cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence            4578999999999999999999999999999999997432 1122223345778999999988764221           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                        .. .+..+++.++++.+++.   +.++  +||||+|||+|||||+.+|++||+|   ||++.+|...++.+.
T Consensus       110 ~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlD---EPts~LD~~t~~~i~  180 (343)
T TIGR02314       110 DNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD---EATSALDPATTQSIL  180 (343)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCcccCCHHHHHHHH
Confidence              11 12345677888888763   4554  7999999999999999999999999   999999999887554

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.98  E-value=6.3e-33  Score=193.68  Aligned_cols=131  Identities=14%  Similarity=0.130  Sum_probs=105.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      ++.++|||||||||||||-+++|+-.|++|+|++.|+.+. .+.......+| +++|+|||.+.|.+.++.         
T Consensus        36 Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~-~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPle  114 (228)
T COG4181          36 GETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLH-KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLE  114 (228)
T ss_pred             CceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchh-hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhh
Confidence            5789999999999999999999999999999999997432 22222333444 679999999988754421         


Q ss_pred             -----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           72 -----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        72 -----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                           ..+....+.+.|+++++.   ..|+  +||||||||+||||++..|++||-|   ||+-++|.++-+++.
T Consensus       115 L~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfAD---EPTGNLD~~Tg~~ia  186 (228)
T COG4181         115 LRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFAD---EPTGNLDRATGDKIA  186 (228)
T ss_pred             hcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEecc---CCCCCcchhHHHHHH
Confidence                 123456688899999874   4555  7999999999999999999999999   999999999887764

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.98  E-value=7.2e-33  Score=204.58  Aligned_cols=127  Identities=14%  Similarity=0.149  Sum_probs=104.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhc-cccHHHHHhhcchhcccccc--c--------c----
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVH-NSACRKLTKELCDVIEDYSL--V--------N----   67 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~~~~~ig~V~Q~~~l--~--------~----   67 (143)
                      ..++|+||||||||||+++++|+++|++|+|.++|.    ++. ..+...+++++|||||+|..  |        .    
T Consensus        31 e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~----~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~  106 (235)
T COG1122          31 ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGL----DTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE  106 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCe----eccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchh
Confidence            468999999999999999999999999999999996    333 35567899999999999863  2        0    


Q ss_pred             cccCCh-hhHHHHHHHHHHhhhh---CC--CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           68 FSTLDI-QDKESVAKLVKLIDKS---NG--YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        68 ~~~~~~-~~~~~~~~~l~~l~~~---~~--~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      +..... +..+++.++++.+++.   ++  +.+||||+|||+||.+||.+|+++++|   |||+.||....+..+
T Consensus       107 n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLD---EPta~LD~~~~~~l~  178 (235)
T COG1122         107 NLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLD---EPTAGLDPKGRRELL  178 (235)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEc---CCCCCCCHHHHHHHH
Confidence            112222 4567889999998873   33  347999999999999999999999999   999999998877543

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.1e-32  Score=214.89  Aligned_cols=125  Identities=17%  Similarity=0.218  Sum_probs=101.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+|||||||||||++|+|+.+|++|+|.++|..    +...+.  .++.++||||++.+|++.++          
T Consensus        30 Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~----i~~~~~--~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~  103 (356)
T PRK11650         30 GEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRV----VNELEP--ADRDIAMVFQNYALYPHMSVRENMAYGLKI  103 (356)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEE----CCCCCH--HHCCEEEEeCCccccCCCCHHHHHHhHHhh
Confidence            45789999999999999999999999999999999973    333332  23679999999988864321          


Q ss_pred             ---Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         .. +..+.+.++++.+++.   ++++  +||||||||+|||||+.+|++||+|   ||++.+|...++.+
T Consensus       104 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD---EP~s~LD~~~r~~l  173 (356)
T PRK11650        104 RGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD---EPLSNLDAKLRVQM  173 (356)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence               11 2235677888888763   4544  7999999999999999999999999   99999999888754

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.98  E-value=1.7e-32  Score=213.91  Aligned_cols=128  Identities=17%  Similarity=0.196  Sum_probs=103.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH----HhhcchhcccccccccccC------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL----TKELCDVIEDYSLVNFSTL------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~----~~~ig~V~Q~~~l~~~~~~------   71 (143)
                      ++.++|+|||||||||||++|+|+++|++|+|+++|.    ++...+...+    ++.++||||++.+|+..++      
T Consensus        19 Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~----~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~   94 (363)
T TIGR01186        19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGE----NIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSL   94 (363)
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCE----ECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHH
Confidence            5689999999999999999999999999999999997    3444444444    5689999999998864331      


Q ss_pred             -------Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           72 -------DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        72 -------~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                             .. +..+.+.++++.+++.   +.++  +||||||||+|||||+.+|+++|||   ||++.+|..+++.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD---EP~saLD~~~r~~l~  169 (363)
T TIGR01186        95 GPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD---EAFSALDPLIRDSMQ  169 (363)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHH
Confidence                   11 2245677888888763   4444  7999999999999999999999999   999999998887554

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.97  E-value=2.4e-32  Score=192.29  Aligned_cols=124  Identities=16%  Similarity=0.168  Sum_probs=103.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      ++.+||+|||||||||||++|+|+..|.+|+|+++|.+..    ...+  ..+-++++||+.+||.+.+           
T Consensus        25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t----~~~P--~~RPVSmlFQEnNLFaHLtV~qNigLGl~P   98 (231)
T COG3840          25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT----ASPP--AERPVSMLFQENNLFAHLTVAQNIGLGLSP   98 (231)
T ss_pred             CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecC----cCCc--ccCChhhhhhccccchhhhhhhhhcccCCc
Confidence            4679999999999999999999999999999999997432    2222  2345899999999995432           


Q ss_pred             ---CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           71 ---LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        71 ---~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                         .+.++.++++.++.++|+.   ++.+  +||||||||++||+|+++-.+||||   |||+-||..-...
T Consensus        99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLD---EPFsALdP~LR~e  167 (231)
T COG3840          99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLD---EPFSALDPALRAE  167 (231)
T ss_pred             ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEec---CchhhcCHHHHHH
Confidence               3457788999999999875   3333  7999999999999999999999999   9999999876554

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=5.4e-33  Score=197.90  Aligned_cols=125  Identities=16%  Similarity=0.125  Sum_probs=100.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH-HhhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      ++.++|+|||||||||.|.++.|+.+|++|.|.+++.    ++...+...+ |..|||+||++.+|...++         
T Consensus        30 GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~----diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE  105 (243)
T COG1137          30 GEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDE----DITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE  105 (243)
T ss_pred             CcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCc----ccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHh
Confidence            5789999999999999999999999999999999997    5566665444 4469999999998832211         


Q ss_pred             ----C-h--hhHHHHHHHHHHhhhh-----CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           72 ----D-I--QDKESVAKLVKLIDKS-----NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        72 ----~-~--~~~~~~~~~l~~l~~~-----~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                          . +  +....++++|+.+.+.     ..+.+|||||+|++||||||.+|+++|||   |||+..|+-.+.
T Consensus       106 ~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLD---EPFAGVDPiaV~  176 (243)
T COG1137         106 IREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLD---EPFAGVDPIAVI  176 (243)
T ss_pred             hhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEec---CCccCCCchhHH
Confidence                1 1  2233466788887653     45558999999999999999999999999   999999986654

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=3.9e-32  Score=198.00  Aligned_cols=129  Identities=13%  Similarity=0.034  Sum_probs=102.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      ++.++|+||||||||||||+|.|+++|++|+|+++|.++. .++.....++++++|++||...||...++          
T Consensus        34 Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~-~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre  112 (263)
T COG1127          34 GEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIP-QLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE  112 (263)
T ss_pred             CcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchh-ccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh
Confidence            4678999999999999999999999999999999997542 34444455788999999999888743221          


Q ss_pred             ----Ch-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           72 ----DI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        72 ----~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                          .+ .-++.+..-|+.+|+.    +.++  +|||.++||++|||+|.+|+++++|   |||+.||+.....
T Consensus       113 ~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~D---EPtsGLDPI~a~~  183 (263)
T COG1127         113 HTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLD---EPTSGLDPISAGV  183 (263)
T ss_pred             hccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEec---CCCCCCCcchHHH
Confidence                11 2234455556777762    4444  7999999999999999999999999   9999999866543

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.97  E-value=6.2e-32  Score=197.37  Aligned_cols=130  Identities=13%  Similarity=0.083  Sum_probs=99.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+. .........+++.++|++|++.+++..++          
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~-~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~  107 (216)
T TIGR00960        29 GEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLT-RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI  107 (216)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehh-hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence            4578999999999999999999999999999999996331 11111123456789999999876532211          


Q ss_pred             ---C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         . .+..+.+.++++.+++.   +..+  +||||+|||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l  177 (216)
T TIGR00960       108 IGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLAD---EPTGNLDPELSRDI  177 (216)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCcCCHHHHHHH
Confidence               1 12235677788888763   3333  7999999999999999999999999   99999999887744

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.97  E-value=6.2e-32  Score=210.45  Aligned_cols=125  Identities=19%  Similarity=0.166  Sum_probs=101.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+|||||||||||++|+|+.+|++|+|.++|+.+    .....  .++.++||||++.+|++.++          
T Consensus        30 Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~----~~~~~--~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~  103 (353)
T TIGR03265        30 GEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI----TRLPP--QKRDYGIVFQSYALFPNLTVADNIAYGLKN  103 (353)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEEC----CCCCH--HHCCEEEEeCCcccCCCCcHHHHHHHHHHh
Confidence            467899999999999999999999999999999999733    22222  35679999999998864331          


Q ss_pred             ---C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         . .+....++++++.+++.   ++++  +||||||||+|||||+.+|+++|||   ||++.+|...++.+
T Consensus       104 ~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD---EP~s~LD~~~r~~l  173 (353)
T TIGR03265       104 RGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLD---EPLSALDARVREHL  173 (353)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence               1 12245678888888763   4454  7999999999999999999999999   99999999887744

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.4e-32  Score=203.01  Aligned_cols=128  Identities=16%  Similarity=0.131  Sum_probs=103.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC--------hh
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD--------IQ   74 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~--------~~   74 (143)
                      -.+||.|+||||||||+|+|+|+.+|+.|.|.++|..+...-.......-+++||||||+..||++.++.        ..
T Consensus        25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~  104 (352)
T COG4148          25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS  104 (352)
T ss_pred             ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence            3589999999999999999999999999999999976543333344445567899999999999876532        12


Q ss_pred             hHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           75 DKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        75 ~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                      +....+++...+++   .++++  +||||||||+|+|||...|++||||   ||++.||..--.
T Consensus       105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmD---EPLaSLD~~RK~  165 (352)
T COG4148         105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMD---EPLASLDLPRKR  165 (352)
T ss_pred             chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeec---Cchhhcccchhh
Confidence            34566777777775   46776  6999999999999999999999999   999999865433

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.2e-31  Score=192.48  Aligned_cols=127  Identities=17%  Similarity=0.197  Sum_probs=105.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc-ccc------------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL-VNF------------   68 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l-~~~------------   68 (143)
                      ++-++|+||||||||||||.|+|.+.|++|++.++|.    +++.++..+++++.+++||+..+ |+|            
T Consensus        27 Gev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~----~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p  102 (259)
T COG4559          27 GEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGV----PLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIP  102 (259)
T ss_pred             CcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCc----ChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccc
Confidence            4568999999999999999999999999999999996    67888999999999999999875 222            


Q ss_pred             -ccCCh--hhHHHHHHHHHHhhhh-----CCCcCCchhHHHHHHHHHHhh------cCCcccccCCccccchhhhhhhhh
Q 032336           69 -STLDI--QDKESVAKLVKLIDKS-----NGYIFAGMDASAVEFSKIAVR------NVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        69 -~~~~~--~~~~~~~~~l~~l~~~-----~~~~lSgGe~qrv~ia~al~~------~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                       ....+  ++.+.++++|.++++.     ....+||||||||.+||+|+|      +++|||||   ||++.+|..-|..
T Consensus       103 ~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LD---EPtsaLDi~HQ~~  179 (259)
T COG4559         103 HRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLD---EPTSALDIAHQHH  179 (259)
T ss_pred             cccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEec---CCccccchHHHHH
Confidence             11122  5666788999998763     333479999999999999999      44699999   9999999987764


Q ss_pred             c
Q 032336          135 Y  135 (143)
Q Consensus       135 ~  135 (143)
                      .
T Consensus       180 t  180 (259)
T COG4559         180 T  180 (259)
T ss_pred             H
Confidence            3

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=5.3e-32  Score=203.95  Aligned_cols=130  Identities=15%  Similarity=0.198  Sum_probs=107.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      ++...|.|-||||||||+|+++++++|++|+|.++|.++. .++....+++| +++++|||.+.|+|+.++         
T Consensus        54 GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~-~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe  132 (386)
T COG4175          54 GEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIA-KLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE  132 (386)
T ss_pred             CeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchh-cCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence            4678899999999999999999999999999999997443 23444445555 469999999999976542         


Q ss_pred             -----ChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 -----DIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 -----~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                           ..+..+++.++|+.+++   +++|+  +|||+||||.+||||+.+|++||+|   ||||-||+=+...+
T Consensus       133 v~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMD---EaFSALDPLIR~~m  203 (386)
T COG4175         133 VQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMD---EAFSALDPLIRTEM  203 (386)
T ss_pred             ecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEec---CchhhcChHHHHHH
Confidence                 23456788899999887   36666  7999999999999999999999999   99999988776543

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=7.7e-32  Score=209.74  Aligned_cols=125  Identities=18%  Similarity=0.261  Sum_probs=101.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      ++.++|+|||||||||||++|+|+++|++|+|.++|..+    ...+.  .++.++||||++.+|++.++          
T Consensus        32 Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i----~~~~~--~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~  105 (351)
T PRK11432         32 GTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV----THRSI--QQRDICMVFQSYALFPHMSLGENVGYGLKM  105 (351)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEEC----CCCCH--HHCCEEEEeCCcccCCCCCHHHHHHHHHhH
Confidence            467899999999999999999999999999999999743    32332  34679999999998864331          


Q ss_pred             ---Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         .. +..+.+.++++.+++.   ++++  +||||||||+|||||+.+|++||+|   ||++.+|....+++
T Consensus       106 ~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLD---EP~s~LD~~~r~~l  175 (351)
T PRK11432        106 LGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFD---EPLSNLDANLRRSM  175 (351)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCCHHHHHHH
Confidence               11 2245677788887763   4444  7999999999999999999999999   99999999888754

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=8.4e-32  Score=195.29  Aligned_cols=129  Identities=12%  Similarity=0.104  Sum_probs=100.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH-HHHhhcchhcccccccccccCC--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR-KLTKELCDVIEDYSLVNFSTLD--------   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~V~Q~~~l~~~~~~~--------   72 (143)
                      ++.++|+||||||||||||+|+|+.++.+|+|.++|+    ++...++. ..+..|+||||...+|+..++.        
T Consensus        29 Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~----dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~  104 (237)
T COG0410          29 GEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGE----DITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY  104 (237)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCe----ecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence            5789999999999999999999999999999999997    55555544 4556799999999988654321        


Q ss_pred             ---h-hhHH-HHHHHHHHhh----hhCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336           73 ---I-QDKE-SVAKLVKLID----KSNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK  137 (143)
Q Consensus        73 ---~-~~~~-~~~~~l~~l~----~~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~  137 (143)
                         . .... ..+++.+.+-    ..++.  .+||||||+++|||||+.+|++|+||   ||+..+-+.+++.+++
T Consensus       105 ~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLD---EPs~GLaP~iv~~I~~  177 (237)
T COG0410         105 ARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLD---EPSEGLAPKIVEEIFE  177 (237)
T ss_pred             cccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEec---CCccCcCHHHHHHHHH
Confidence               1 1111 1455555553    22333  37999999999999999999999999   8888888888876653

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.97  E-value=9.4e-32  Score=212.13  Aligned_cols=128  Identities=15%  Similarity=0.133  Sum_probs=104.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc------------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------------   69 (143)
                      ++.++|+||||||||||||+|+|+++|++|+|+++|.    ++...+.+++++.++||+|++.+++..            
T Consensus        29 Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~----~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~  104 (402)
T PRK09536         29 GSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGD----DVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTP  104 (402)
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCE----EcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccch
Confidence            4678999999999999999999999999999999997    444455667788899999998764211            


Q ss_pred             ---cC---ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           70 ---TL---DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        70 ---~~---~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                         ..   ...+.+.+.++++.+++.   ++.+  +||||||||.|||||+++|++||||   ||++.||...+..++
T Consensus       105 ~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLD---EPtsgLD~~~~~~l~  179 (402)
T PRK09536        105 HRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD---EPTASLDINHQVRTL  179 (402)
T ss_pred             hcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHHHH
Confidence               01   234456788899988763   4444  7999999999999999999999999   999999998776543

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.97  E-value=1.4e-31  Score=203.92  Aligned_cols=126  Identities=16%  Similarity=0.112  Sum_probs=104.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..+||+||||||||||+|+|+|+.+|++|+|.++|..    .... ....++++||+||++.+++..+.          
T Consensus        31 Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~----~~~~-~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l  105 (293)
T COG1131          31 GEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYD----VVKE-PAKVRRRIGYVPQEPSLYPELTVRENLEFFARL  105 (293)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEe----CccC-HHHHHhheEEEccCCCCCccccHHHHHHHHHHH
Confidence            35789999999999999999999999999999999963    2222 56778889999999987643321          


Q ss_pred             ---C-hhhHHHHHHHHHHhhhhC---CCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---D-IQDKESVAKLVKLIDKSN---GYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~-~~~~~~~~~~l~~l~~~~---~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         . ..+.+.++++++.+++..   ..+  +|+||||||.||+||+.+|++++||   |||+.+|......+
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD---EPt~GLDp~~~~~~  175 (293)
T COG1131         106 YGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILD---EPTSGLDPESRREI  175 (293)
T ss_pred             hCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEEC---CCCcCCCHHHHHHH
Confidence               1 234568899999998863   333  7999999999999999999999999   99999999877644

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.97  E-value=1.7e-31  Score=197.40  Aligned_cols=127  Identities=15%  Similarity=0.103  Sum_probs=99.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc---HHHHHhhcchhccccccccccc--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA---CRKLTKELCDVIEDYSLVNFST--------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---~~~~~~~ig~V~Q~~~l~~~~~--------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+   ...+++.++|++|++.+++..+        
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~----~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~  101 (235)
T cd03261          26 GEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGED----ISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP  101 (235)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE----ccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHH
Confidence            45789999999999999999999999999999999963    22222   2446678999999987653211        


Q ss_pred             ------CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ------LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ------~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                            ... +..+.+.++++.+++.   +..+  +||||+|||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllD---EPt~~LD~~~~~~l  175 (235)
T cd03261         102 LREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYD---EPTAGLDPIASGVI  175 (235)
T ss_pred             HhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCcccCCHHHHHHH
Confidence                  111 1234567778887763   3333  7999999999999999999999999   99999999887754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.97  E-value=1.3e-31  Score=209.87  Aligned_cols=125  Identities=14%  Similarity=0.148  Sum_probs=100.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.++|..    +...+.  .++.++||||++.+|++.++          
T Consensus        40 Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~----i~~~~~--~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~  113 (375)
T PRK09452         40 GEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQD----ITHVPA--ENRHVNTVFQSYALFPHMTVFENVAFGLRM  113 (375)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE----CCCCCH--HHCCEEEEecCcccCCCCCHHHHHHHHHhh
Confidence            45789999999999999999999999999999999973    333332  34679999999988864321          


Q ss_pred             ---Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         .. +..+.+.++++.+++.   ++++  +||||||||+|||||+.+|+++|+|   ||++.+|....+.+
T Consensus       114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLD---EP~s~LD~~~r~~l  183 (375)
T PRK09452        114 QKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD---ESLSALDYKLRKQM  183 (375)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCcCCHHHHHHH
Confidence               11 1234567788887763   4444  7999999999999999999999999   99999999887754

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=1.9e-31  Score=187.76  Aligned_cols=128  Identities=15%  Similarity=0.159  Sum_probs=103.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehh------hh---ccccHHHHHhhcchhccccccccccc---
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQ------AV---HNSACRKLTKELCDVIEDYSLVNFST---   70 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~------~~---~~~~~~~~~~~ig~V~Q~~~l~~~~~---   70 (143)
                      --+.|||.|||||||+||||+-+..|+.|.|.++|..+.-      .+   ......++|.++++|||+++|+.+++   
T Consensus        33 dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLe  112 (256)
T COG4598          33 DVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLE  112 (256)
T ss_pred             CEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHH
Confidence            3578999999999999999999999999999999975421      01   12233567788999999999985443   


Q ss_pred             -----------C-ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           71 -----------L-DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        71 -----------~-~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                                 . ..+..++++.+|.++|++   +.|+  +|||||||++||||||.+|+++|+|   ||++-||++-+-
T Consensus       113 NViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFD---EPTSALDPElVg  189 (256)
T COG4598         113 NVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFD---EPTSALDPELVG  189 (256)
T ss_pred             HHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeec---CCcccCCHHHHH
Confidence                       1 234567788888888874   4555  7999999999999999999999999   999999987553

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.8e-31  Score=208.23  Aligned_cols=125  Identities=12%  Similarity=0.136  Sum_probs=100.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+|||||||||||++|+|+.+|++|+|+++|..+    ...+  ..++.++||||++.+|++.++          
T Consensus        45 Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i----~~~~--~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~  118 (377)
T PRK11607         45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL----SHVP--PYQRPINMMFQSYALFPHMTVEQNIAFGLKQ  118 (377)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC----CCCC--HHHCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999999733    2222  245679999999998865331          


Q ss_pred             ---C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         . .+..+++.++++.+++.   ++++  +||||||||+|||||+.+|++||||   ||++.+|....+.+
T Consensus       119 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLD---EP~s~LD~~~r~~l  188 (377)
T PRK11607        119 DKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD---EPMGALDKKLRDRM  188 (377)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence               1 12234567778877763   4554  7999999999999999999999999   99999999887644

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.97  E-value=4.2e-31  Score=202.02  Aligned_cols=126  Identities=15%  Similarity=0.090  Sum_probs=100.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..    +.. ....+++.++|+||++.+++..+.          
T Consensus        19 Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~   93 (302)
T TIGR01188        19 GEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYD----VVR-EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRL   93 (302)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE----ccc-CHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHH
Confidence            45789999999999999999999999999999999963    222 234566789999999876642211          


Q ss_pred             ---C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         . .+..+.+.++++.+++.   +..+  +||||||||+||+||+.+|+++++|   ||++.+|...++.+
T Consensus        94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~gLD~~~~~~l  163 (302)
T TIGR01188        94 YGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD---EPTTGLDPRTRRAI  163 (302)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence               1 12234577888888763   4444  7999999999999999999999999   99999999887744

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.97  E-value=2.8e-31  Score=207.32  Aligned_cols=125  Identities=18%  Similarity=0.181  Sum_probs=100.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCC--ceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG--SNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL--------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~--G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~--------   71 (143)
                      +..++|+|||||||||||++|+|+++|++  |+|.++|..+    .....  .++.++||||++.+|++.++        
T Consensus        31 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~----~~~~~--~~r~ig~vfQ~~~l~p~~tv~enl~~~l  104 (362)
T TIGR03258        31 GELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDL----THAPP--HKRGLALLFQNYALFPHLKVEDNVAFGL  104 (362)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEEC----CCCCH--HHCCEEEEECCcccCCCCcHHHHHHHHH
Confidence            45789999999999999999999999999  9999999733    22222  34679999999988854321        


Q ss_pred             -----C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 -----D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 -----~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                           . .+....+.++++.+++.   ++++  +||||||||+|||||+.+|+++|||   ||++.+|....+.+
T Consensus       105 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLD---EP~s~LD~~~r~~l  176 (362)
T TIGR03258       105 RAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLD---EPLSALDANIRANM  176 (362)
T ss_pred             HHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CccccCCHHHHHHH
Confidence                 1 12234677888888763   4444  7999999999999999999999999   99999999887754

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.97  E-value=3.2e-31  Score=215.64  Aligned_cols=127  Identities=14%  Similarity=0.168  Sum_probs=103.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++... .+.+|+.++||+|++.+|.-     ...  ...
T Consensus       361 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~----~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~  435 (529)
T TIGR02868       361 GERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGV----SVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDA  435 (529)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE----EhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCC
Confidence            5689999999999999999999999999999999997    55667 78899999999999998831     111  112


Q ss_pred             hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      +.+.+.++++.+++.                .+..+|||||||++||||+..+|+++++|   |||+.+|.++.+++.
T Consensus       436 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLD---E~TSaLD~~te~~I~  510 (529)
T TIGR02868       436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD---EPTEHLDAGTESELL  510 (529)
T ss_pred             CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHH
Confidence            344566677665421                12337999999999999999999999999   999999998887654

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.3e-31  Score=205.13  Aligned_cols=128  Identities=16%  Similarity=0.146  Sum_probs=100.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc---HHHHHhhcchhccccccccccc--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA---CRKLTKELCDVIEDYSLVNFST--------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---~~~~~~~ig~V~Q~~~l~~~~~--------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..    +...+   ....++.++||||++.+++..+        
T Consensus        31 Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~----i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~  106 (343)
T PRK11153         31 GEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQD----LTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALP  106 (343)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE----CCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHH
Confidence            46789999999999999999999999999999999973    33322   2345678999999988764221        


Q ss_pred             -----CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 -----LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 -----~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                           ... +..+.+.++++.+++.   +.++  +||||+|||+|||||+.+|+++|+|   ||++.||...++.+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLD---EPts~LD~~~~~~l~  180 (343)
T PRK11153        107 LELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCD---EATSALDPATTRSIL  180 (343)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHHH
Confidence                 111 2234567788888763   3443  7999999999999999999999999   999999998877543

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.97  E-value=6.8e-31  Score=191.16  Aligned_cols=127  Identities=14%  Similarity=0.102  Sum_probs=98.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc-ccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL-VNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l-~~~~~----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+...+++.++|++|++.+ ++..+          
T Consensus        27 G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~  102 (211)
T cd03225          27 GEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKD----LTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLE  102 (211)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE----cccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHH
Confidence            45789999999999999999999999999999999963    3333445567789999999742 21111          


Q ss_pred             ---CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ---LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ---~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         .. .+....+.++++.+++.   +..+  +||||+|||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~~  173 (211)
T cd03225         103 NLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD---EPTAGLDPAGRREL  173 (211)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence               11 11234566778877763   3333  7999999999999999999999999   99999999887744

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.97  E-value=4.4e-31  Score=193.01  Aligned_cols=127  Identities=14%  Similarity=0.113  Sum_probs=98.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH---H-HHHhhcchhcccccccccccC------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC---R-KLTKELCDVIEDYSLVNFSTL------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~---~-~~~~~ig~V~Q~~~l~~~~~~------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+.   . ..++.++|++|++.+++..+.      
T Consensus        30 G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~----~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~  105 (218)
T cd03255          30 GEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTD----ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVEL  105 (218)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEe----hhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHH
Confidence            46789999999999999999999999999999999963    222221   1 234679999999876532110      


Q ss_pred             -------C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 -------D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 -------~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                             . .+..+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD---EP~~~LD~~~~~~l  179 (218)
T cd03255         106 PLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILAD---EPTGNLDSETGKEV  179 (218)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEc---CCcccCCHHHHHHH
Confidence                   1 11234567778887763   3333  7999999999999999999999999   99999999887744

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.3e-31  Score=206.83  Aligned_cols=125  Identities=13%  Similarity=0.143  Sum_probs=99.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.++|..+    ...+.  .++.++||||++.+|+..++          
T Consensus        29 Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i----~~~~~--~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~  102 (369)
T PRK11000         29 GEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM----NDVPP--AERGVGMVFQSYALYPHLSVAENMSFGLKL  102 (369)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC----CCCCH--hHCCEEEEeCCcccCCCCCHHHHHHhHHhh
Confidence            467899999999999999999999999999999999733    22222  24679999999887743221          


Q ss_pred             ---C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         . .+..+.+.++++.+++.   ++++  +||||||||+|||||+.+|++||+|   ||++.||....+.+
T Consensus       103 ~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD---EPts~LD~~~~~~l  172 (369)
T PRK11000        103 AGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD---EPLSNLDAALRVQM  172 (369)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence               1 12235677888888763   4444  7999999999999999999999999   99999999887644

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.97  E-value=6.6e-31  Score=192.50  Aligned_cols=126  Identities=14%  Similarity=0.164  Sum_probs=99.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..+    .. ....+++.++|+||++.+++..+           
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~----~~-~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  100 (220)
T cd03265          26 GEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV----VR-EPREVRRRIGIVFQDLSVDDELTGWENLYIHARL  100 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec----Cc-ChHHHhhcEEEecCCccccccCcHHHHHHHHHHH
Confidence            467899999999999999999999999999999999632    22 22445677999999987653211           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .. .+..+.+.++++.+++.   +.++  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       101 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD---EPt~~LD~~~~~~l  170 (220)
T cd03265         101 YGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD---EPTIGLDPQTRAHV  170 (220)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccCCCHHHHHHH
Confidence              11 12234567788888763   3333  7999999999999999999999999   99999999888754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.97  E-value=7.1e-31  Score=194.43  Aligned_cols=127  Identities=10%  Similarity=0.146  Sum_probs=99.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc---HHHHHhhcchhcccccccccccC-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA---CRKLTKELCDVIEDYSLVNFSTL-------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---~~~~~~~ig~V~Q~~~l~~~~~~-------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+   ...+++.++|++|++.+++..++       
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~  102 (241)
T cd03256          27 GEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTD----INKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSG  102 (241)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEe----ccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhh
Confidence            45789999999999999999999999999999999963    32222   34456789999999876532110       


Q ss_pred             ---------------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           72 ---------------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        72 ---------------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                                     .....+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~~  179 (241)
T cd03256         103 RLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILAD---EPVASLDPAS  179 (241)
T ss_pred             hcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHH
Confidence                           112234566778877763   3333  7999999999999999999999999   9999999988


Q ss_pred             hhhc
Q 032336          132 QEKY  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      ++.+
T Consensus       180 ~~~l  183 (241)
T cd03256         180 SRQV  183 (241)
T ss_pred             HHHH
Confidence            7744

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.97  E-value=8.4e-31  Score=188.06  Aligned_cols=129  Identities=12%  Similarity=0.036  Sum_probs=97.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--ccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFS----------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~----------   69 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+.  ........+++.++|++|++.  ++...          
T Consensus        18 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~--~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~   95 (190)
T TIGR01166        18 GEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD--YSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPL   95 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEcc--ccccchHHHHhhEEEEecChhhccccccHHHHHHHHHH
Confidence            4578999999999999999999999999999999996331  112223455677999999973  33110          


Q ss_pred             --cCCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 --TLDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 --~~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .... +..+.+.++++.+++.   +..+  +|+||+|||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus        96 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~~  166 (190)
T TIGR01166        96 NLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD---EPTAGLDPAGREQM  166 (190)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence              0111 1234567778877763   3333  7999999999999999999999999   99999999887754

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.97  E-value=8.3e-31  Score=191.91  Aligned_cols=130  Identities=14%  Similarity=0.047  Sum_probs=97.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhccccccccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYSLVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~~~~~----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+. .........++ +.++|++|++.+++..+          
T Consensus        31 G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~  109 (221)
T TIGR02211        31 GEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLS-KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL  109 (221)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh-hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence            4578999999999999999999999999999999996332 11111112233 57999999987653211          


Q ss_pred             ---CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ---LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ---~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         .. .+..+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD---EPt~~LD~~~~~~l  180 (221)
T TIGR02211       110 IGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLAD---EPTGNLDNNNAKII  180 (221)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe---CCCCcCCHHHHHHH
Confidence               11 12234566778877763   3333  7999999999999999999999999   99999999887644

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.97  E-value=7.8e-31  Score=191.13  Aligned_cols=130  Identities=14%  Similarity=0.084  Sum_probs=99.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+. ..........++.++|++|++.+++..+           
T Consensus        27 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~-~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~  105 (214)
T cd03292          27 GEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS-DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV  105 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcc-cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence            4578999999999999999999999999999999996332 1111112345678999999987663211           


Q ss_pred             --CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        ... +..+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~~  175 (214)
T cd03292         106 TGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIAD---EPTGNLDPDTTWEI  175 (214)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEe---CCCCcCCHHHHHHH
Confidence              111 1234567778877653   3333  7999999999999999999999999   99999999887744

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.97  E-value=7.7e-31  Score=190.98  Aligned_cols=124  Identities=16%  Similarity=0.164  Sum_probs=98.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC------------
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL------------   71 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~------------   71 (143)
                      .++|+||||||||||+++|+|+++|++|+|.++|.    ++...+ ..+++.++|++|++.+++..++            
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~----~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  101 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQ----DVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG  101 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCC----ccccch-HHHHhheEEecCCCcccccCCHHHHHHHHHHHhC
Confidence            58999999999999999999999999999999996    333233 4567789999999876632211            


Q ss_pred             -C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 -D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 -~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       . .+..+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       102 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~~l  169 (211)
T cd03264         102 IPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD---EPTAGLDPEERIRF  169 (211)
T ss_pred             CCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence             1 11234566778877653   3333  7999999999999999999999999   99999999888744

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.97  E-value=6.5e-31  Score=204.73  Aligned_cols=125  Identities=17%  Similarity=0.182  Sum_probs=100.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.++|..+    ....  ..++.++||||++.+|+..++          
T Consensus        28 Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i----~~~~--~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~  101 (353)
T PRK10851         28 GQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV----SRLH--ARDRKVGFVFQHYALFRHMTVFDNIAFGLTV  101 (353)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC----CCCC--HHHCCEEEEecCcccCCCCcHHHHHHhhhhh
Confidence            457899999999999999999999999999999999743    2222  234679999999887753211          


Q ss_pred             -------C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 -------D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 -------~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                             . .+..+.+.++++.+++.   +.++  +||||||||+|||||+.+|+++|+|   ||++.||...++.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD---EP~s~LD~~~r~~l  175 (353)
T PRK10851        102 LPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD---EPFGALDAQVRKEL  175 (353)
T ss_pred             cccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHH
Confidence                   1 12235677888888763   4444  7999999999999999999999999   99999999888754

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.97  E-value=8.3e-31  Score=191.07  Aligned_cols=130  Identities=14%  Similarity=0.107  Sum_probs=99.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+. .........+++.++|++|++.+++..+           
T Consensus        28 G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~-~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  106 (214)
T TIGR02673        28 GEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVN-RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV  106 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc-cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence            4578999999999999999999999999999999996331 1111112345678999999987663211           


Q ss_pred             --CCh-hhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LDI-QDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~~-~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        ... ...+.+.++++.+++.   +..  .+||||+|||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLD---EPt~~LD~~~~~~l  176 (214)
T TIGR02673       107 RGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLAD---EPTGNLDPDLSERI  176 (214)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe---CCcccCCHHHHHHH
Confidence              111 1234567778887763   233  37999999999999999999999999   99999999887743

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.97  E-value=9.8e-31  Score=193.98  Aligned_cols=130  Identities=15%  Similarity=0.190  Sum_probs=98.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+. .........+++.++|+||++.+++..+           
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~-~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~  106 (243)
T TIGR02315        28 GEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDIT-KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG  106 (243)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhh-hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccc
Confidence            4578999999999999999999999999999999996332 1111112345678999999977653111           


Q ss_pred             -----------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           71 -----------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        71 -----------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                                 ...+..+.+.++++.+++.   +...  +||||+|||+|||||+.+|+++++|   ||++.+|...++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~~  183 (243)
T TIGR02315       107 YKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILAD---EPIASLDPKTSKQ  183 (243)
T ss_pred             cccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHH
Confidence                       0112334567778887763   3333  7999999999999999999999999   9999999987764


Q ss_pred             c
Q 032336          135 Y  135 (143)
Q Consensus       135 ~  135 (143)
                      +
T Consensus       184 l  184 (243)
T TIGR02315       184 V  184 (243)
T ss_pred             H
Confidence            3

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.97  E-value=5.8e-31  Score=191.86  Aligned_cols=125  Identities=19%  Similarity=0.197  Sum_probs=97.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    ...+  ..++.++|+||++.+++..+           
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~----~~~~--~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~   99 (213)
T cd03259          26 GEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV----TGVP--PERRNIGMVFQDYALFPHLTVAENIAFGLKL   99 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc----CcCc--hhhccEEEEcCchhhccCCcHHHHHHhHHHH
Confidence            467899999999999999999999999999999999633    2222  23467999999987653211           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .. ....+.+.++++.+++.   +..+  +||||||||+|||||+.+|+++++|   ||++.+|...+..+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllD---EPt~~LD~~~~~~l  169 (213)
T cd03259         100 RGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD---EPLSALDAKLREEL  169 (213)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence              01 12234567778887763   3333  7999999999999999999999999   99999999887754

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.97  E-value=8.7e-31  Score=200.66  Aligned_cols=126  Identities=14%  Similarity=0.047  Sum_probs=99.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++|..+    ... ....++.+||+||++.+++..+           
T Consensus        33 Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~----~~~-~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~  107 (306)
T PRK13537         33 GECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPV----PSR-ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY  107 (306)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEec----ccc-hHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH
Confidence            457899999999999999999999999999999999733    222 2346778999999988763221           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .. .+....+.++++.+++.   +..+  +|+||+|||+||+||+++|++++||   ||++.+|...+..+
T Consensus       108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLD---EPt~gLD~~~~~~l  177 (306)
T PRK13537        108 FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD---EPTTGLDPQARHLM  177 (306)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEe---CCCcCCCHHHHHHH
Confidence              11 12234566778887763   3333  7999999999999999999999999   99999999887743

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.97  E-value=9.4e-31  Score=191.27  Aligned_cols=126  Identities=13%  Similarity=0.025  Sum_probs=99.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    .. ....+++.++|+||++.+++..+           
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~----~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~  105 (218)
T cd03266          31 GEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV----VK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGL  105 (218)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEc----cc-CHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHH
Confidence            467899999999999999999999999999999999733    22 23455678999999987653211           


Q ss_pred             --CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        ... +..+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++++
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD---EPt~~LD~~~~~~l  175 (218)
T cd03266         106 YGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD---EPTTGLDVMATRAL  175 (218)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEc---CCCcCCCHHHHHHH
Confidence              111 2234567788887763   3333  7999999999999999999999999   99999999887643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=7.2e-31  Score=204.51  Aligned_cols=131  Identities=15%  Similarity=0.128  Sum_probs=101.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC--------Ch
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL--------DI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~--------~~   73 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.++|..+............++.++|+||++.+|+..++        ..
T Consensus        24 Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~  103 (352)
T PRK11144         24 QGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK  103 (352)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh
Confidence            4578999999999999999999999999999999996432100011123356789999999888754332        11


Q ss_pred             hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           74 QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        74 ~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ...+.+.++++.+++.   ++.+  +||||||||+|||||+.+|+++|+|   ||++.+|....+.+
T Consensus       104 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD---EPts~LD~~~~~~l  167 (352)
T PRK11144        104 SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD---EPLASLDLPRKREL  167 (352)
T ss_pred             hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCCHHHHHHH
Confidence            2234677788888763   3443  7999999999999999999999999   99999999887744

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.2e-30  Score=192.63  Aligned_cols=127  Identities=13%  Similarity=0.054  Sum_probs=98.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH---HHH-hhcchhccccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR---KLT-KELCDVIEDYSLVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~---~~~-~~ig~V~Q~~~l~~~~~-------   70 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|+++|..    +...+..   .++ +.++|+||++.+++..+       
T Consensus        35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~  110 (233)
T PRK11629         35 GEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQP----MSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAM  110 (233)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE----cCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHH
Confidence            45789999999999999999999999999999999963    3333322   233 56999999987653211       


Q ss_pred             ------CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ------LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ------~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                            .. .+..+.+.++++.+++.   +..+  +||||||||+||||++.+|+++++|   ||++.+|....+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD---EPt~~LD~~~~~~l  184 (233)
T PRK11629        111 PLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLAD---EPTGNLDARNADSI  184 (233)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHH
Confidence                  11 12234577788888763   3333  7999999999999999999999999   99999999887743

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.97  E-value=6.8e-31  Score=218.49  Aligned_cols=129  Identities=14%  Similarity=0.130  Sum_probs=102.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-C-hh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-D-IQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~-~~   74 (143)
                      ++.+||+|+||||||||+|+|+|+++|++|+|.+||.    ++...+...+|+.|+||+|++.+|.-     ... . ..
T Consensus       499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~----dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~  574 (709)
T COG2274         499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV----DLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEA  574 (709)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----eHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCC
Confidence            4679999999999999999999999999999999997    67778889999999999999988721     111 1 11


Q ss_pred             hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336           75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK  137 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~  137 (143)
                      ..+.+.++++..+.       .         .+.-+|||||||++||||+.++|++|+||   |||+.+|.++...+++
T Consensus       575 ~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLD---EaTSaLD~~sE~~I~~  650 (709)
T COG2274         575 TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLD---EATSALDPETEAIILQ  650 (709)
T ss_pred             CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEe---CcccccCHhHHHHHHH
Confidence            12344444444332       1         22237999999999999999999999999   9999999988775543

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=9.6e-31  Score=206.29  Aligned_cols=128  Identities=14%  Similarity=0.159  Sum_probs=100.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH---H-HHhhcchhcccccccccccC------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR---K-LTKELCDVIEDYSLVNFSTL------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~---~-~~~~ig~V~Q~~~l~~~~~~------   71 (143)
                      ++.++|+||||||||||+|+|+|+++|++|+|+++|..    +...+..   . .++.++||||++.+|+..+.      
T Consensus        54 Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~----i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~  129 (400)
T PRK10070         54 GEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVD----IAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAF  129 (400)
T ss_pred             CCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEE----CCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHH
Confidence            46799999999999999999999999999999999973    3333322   2 23579999999887743221      


Q ss_pred             -------C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           72 -------D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        72 -------~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                             . .+..+.+.++++.+++.   +.++  +||||||||+|||||+.+|++||+|   ||++.+|...++.+.
T Consensus       130 ~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLD---EPts~LD~~~r~~l~  204 (400)
T PRK10070        130 GMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMD---EAFSALDPLIRTEMQ  204 (400)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEE---CCCccCCHHHHHHHH
Confidence                   1 12234667788888763   4443  7999999999999999999999999   999999998887543

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.97  E-value=9.1e-31  Score=189.92  Aligned_cols=124  Identities=15%  Similarity=0.064  Sum_probs=96.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--ccccc---------c
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFS---------T   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~---------~   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    ..   ...++.++|++|++.  ++...         .
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~---~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~   98 (205)
T cd03226          26 GEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI----KA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLK   98 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEh----hh---HHhhcceEEEecChhhhhhhccHHHHHhhhhh
Confidence            467899999999999999999999999999999999632    21   345567999999963  22110         0


Q ss_pred             CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ........+.++++.+++.   +..+  +||||+|||++|||++.+|+++++|   ||++.+|...++.+
T Consensus        99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l  165 (205)
T cd03226          99 ELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFD---EPTSGLDYKNMERV  165 (205)
T ss_pred             hcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEe---CCCccCCHHHHHHH
Confidence            0111234677888888763   3333  7999999999999999999999999   99999999887744

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.97  E-value=1.3e-30  Score=190.83  Aligned_cols=126  Identities=13%  Similarity=0.009  Sum_probs=98.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    ... ...+++.++|++|++.+++..+           
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~----~~~-~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~  102 (220)
T cd03263          28 GEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI----RTD-RKAARQSLGYCPQFDALFDELTVREHLRFYARL  102 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec----ccc-hHHHhhhEEEecCcCCccccCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999999632    222 2455677999999987653211           


Q ss_pred             --CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        ... +..+.+.++++.+++.   +..+  +|+||+|||+||||++.+|+++++|   ||++.+|...++..
T Consensus       103 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP~~~LD~~~~~~l  172 (220)
T cd03263         103 KGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD---EPTSGLDPASRRAI  172 (220)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCCCCCCHHHHHHH
Confidence              111 1234567778777663   2333  7999999999999999999999999   99999999887744

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.97  E-value=1.5e-30  Score=214.04  Aligned_cols=128  Identities=13%  Similarity=0.082  Sum_probs=103.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCC--hh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLD--IQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~--~~   74 (143)
                      +..+||+||||||||||+++|+|++ |++|+|.++|.    ++...+...+|+.|+||+|++.+|.-     ....  ..
T Consensus       376 G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~----~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~  450 (588)
T PRK11174        376 GQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGI----ELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDA  450 (588)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCE----ecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCC
Confidence            4689999999999999999999999 99999999997    56777888899999999999998831     1111  12


Q ss_pred             hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336           75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK  137 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~  137 (143)
                      +.+.+.++++..++       .         .+..+|||||||++||||+..+|++++||   |||+.+|.++.+++.+
T Consensus       451 ~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLD---E~TSaLD~~te~~i~~  526 (588)
T PRK11174        451 SDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLD---EPTASLDAHSEQLVMQ  526 (588)
T ss_pred             CHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHHHH
Confidence            23455555555432       1         22337999999999999999999999999   9999999999886653

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.97  E-value=1.3e-30  Score=201.62  Aligned_cols=131  Identities=15%  Similarity=0.188  Sum_probs=101.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc--ccccccc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY--SLVNFST---------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~--~l~~~~~---------   70 (143)
                      ++.++|+|+||||||||+++|+|+++|++|+|.++|..+. .+.....+.+++.++||||++  .+++..+         
T Consensus        47 Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~-~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l  125 (331)
T PRK15079         47 GETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL-GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL  125 (331)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC-cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHH
Confidence            4679999999999999999999999999999999997432 111122344667899999997  3443211         


Q ss_pred             ------CCh-hhHHHHHHHHHHhhh----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 ------LDI-QDKESVAKLVKLIDK----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 ------~~~-~~~~~~~~~l~~l~~----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                            ... +..+.+.++++.+++    .+.++  +||||+|||+|||||+.+|+++++|   ||++.||..++..++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilD---EPts~LD~~~~~~i~  201 (331)
T PRK15079        126 RTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICD---EPVSALDVSIQAQVV  201 (331)
T ss_pred             HHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHHH
Confidence                  111 223566778888776    24444  7999999999999999999999999   999999999887543

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.97  E-value=1.3e-30  Score=189.38  Aligned_cols=125  Identities=12%  Similarity=0.016  Sum_probs=98.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...  ...++.++|+||++.+++..++          
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~   99 (208)
T cd03268          26 GEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS----YQKN--IEALRRIGALIEAPGFYPNLTARENLRLLARL   99 (208)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCc----ccch--HHHHhhEEEecCCCccCccCcHHHHHHHHHHh
Confidence            45789999999999999999999999999999999963    2222  3456779999999876532211          


Q ss_pred             ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ...+.+.+.++++.+++.   +..+  +||||+|||++|||++.+|+++++|   ||++.+|...++.+
T Consensus       100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~~l  165 (208)
T cd03268         100 LGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD---EPTNGLDPDGIKEL  165 (208)
T ss_pred             cCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCcccCCHHHHHHH
Confidence            011234567778887763   3333  7999999999999999999999999   99999999887744

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.7e-30  Score=196.81  Aligned_cols=128  Identities=15%  Similarity=0.065  Sum_probs=100.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++|.    ++...+...+++.++|+||++. ++...+          
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~  108 (279)
T PRK13650         33 GEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD----LLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLE  108 (279)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE----ECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHH
Confidence            4678999999999999999999999999999999997    3333444566778999999873 321110          


Q ss_pred             ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                         ... +..+.+.++++.+++.   +..+  +||||+|||+|||||+.+|++|++|   ||++.+|...+..++
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD---EPt~~LD~~~~~~l~  180 (279)
T PRK13650        109 NKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD---EATSMLDPEGRLELI  180 (279)
T ss_pred             hCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHHHH
Confidence               111 2235677888888763   3333  7999999999999999999999999   999999998877543

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.8e-30  Score=197.33  Aligned_cols=127  Identities=13%  Similarity=0.081  Sum_probs=99.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccc--cHHHHHhhcchhccccc--ccccc--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNS--ACRKLTKELCDVIEDYS--LVNFS--------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~--~~~~~~~~ig~V~Q~~~--l~~~~--------   69 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..+    ...  ....+++.++||||++.  ++...        
T Consensus        33 Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~  108 (287)
T PRK13637         33 GEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI----TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFG  108 (287)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEEC----CCcCccHHHHhhceEEEecCchhccccccHHHHHHhH
Confidence            467999999999999999999999999999999999733    222  23456778999999873  33110        


Q ss_pred             ----cCCh-hhHHHHHHHHHHhhhh-----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 ----TLDI-QDKESVAKLVKLIDKS-----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 ----~~~~-~~~~~~~~~l~~l~~~-----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          .... +..+.+.++++.+++.     +..+  +||||+|||+|||||+.+|+++++|   ||++.+|...+..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllD---EPt~gLD~~~~~~l  183 (287)
T PRK13637        109 PINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILD---EPTAGLDPKGRDEI  183 (287)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CCccCCCHHHHHHH
Confidence                0111 2234677888888763     3333  7999999999999999999999999   99999999887754

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2e-30  Score=195.91  Aligned_cols=127  Identities=13%  Similarity=0.065  Sum_probs=99.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccc--------c--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNF--------S--   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~--------~--   69 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++.......+++.++|+||++.  ++..        .  
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~  106 (274)
T PRK13647         31 GSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGR----EVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPV  106 (274)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCE----ECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHH
Confidence            4679999999999999999999999999999999996    3333444566778999999873  2210        0  


Q ss_pred             --cCCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 --TLDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 --~~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .... +..+.+.++++.+++.   +..+  +||||+|||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       107 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD---EPt~~LD~~~~~~l  177 (274)
T PRK13647        107 NMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD---EPMAYLDPRGQETL  177 (274)
T ss_pred             HcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCCcCCCHHHHHHH
Confidence              0111 2234567778887763   3333  7999999999999999999999999   99999999888754

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.97  E-value=2e-30  Score=191.56  Aligned_cols=127  Identities=15%  Similarity=0.101  Sum_probs=98.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH-HhhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +.......+ +..++|+||++.+++..++         
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~  101 (236)
T cd03219          26 GEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGED----ITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQ  101 (236)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEE----CCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHh
Confidence            45789999999999999999999999999999999963    333333333 4569999999876532110         


Q ss_pred             ---------------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           72 ---------------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        72 ---------------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                                     ..+..+.+.++++.+++.   +..+  +||||+|||++|||++.+|+++++|   ||++.+|...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EPt~~LD~~~  178 (236)
T cd03219         102 ARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLD---EPAAGLNPEE  178 (236)
T ss_pred             hccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHH
Confidence                           012234567778877763   2333  7999999999999999999999999   9999999987


Q ss_pred             hhhc
Q 032336          132 QEKY  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      ++.+
T Consensus       179 ~~~l  182 (236)
T cd03219         179 TEEL  182 (236)
T ss_pred             HHHH
Confidence            7643

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.97  E-value=2e-30  Score=187.94  Aligned_cols=130  Identities=12%  Similarity=0.127  Sum_probs=99.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc-HHHHHhhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA-CRKLTKELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..+. .+.... ....++.++|++|++.+++..+.         
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~  102 (206)
T TIGR03608        24 GKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETP-PLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLK  102 (206)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc-ccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHH
Confidence            4678999999999999999999999999999999996321 011111 12355679999999876642211         


Q ss_pred             ----C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ----D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ----~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          . .+..+.+.++++.+++.   +..+  +|+||+||++|||||+.+|+++++|   ||++.+|...++++
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD---EPt~~LD~~~~~~l  173 (206)
T TIGR03608       103 YKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD---EPTGSLDPKNRDEV  173 (206)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcCCCCHHHHHHH
Confidence                1 12234567778887763   3333  7999999999999999999999999   99999999887754

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.97  E-value=2.9e-30  Score=189.30  Aligned_cols=130  Identities=13%  Similarity=0.051  Sum_probs=98.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+. .........+++.++|++|++.+++..+           
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~-~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  106 (222)
T PRK10908         28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDIT-RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLII  106 (222)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc-cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHh
Confidence            4678999999999999999999999999999999996332 1111122335678999999987542211           


Q ss_pred             --CCh-hhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LDI-QDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~~-~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        ... +..+.+.++++.+++.   +..  .+||||+|||++|||++.+|+++++|   ||++.+|...++.+
T Consensus       107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l  176 (222)
T PRK10908        107 AGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLAD---EPTGNLDDALSEGI  176 (222)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEe---CCCCcCCHHHHHHH
Confidence              111 1233466777877753   333  37999999999999999999999999   99999999887644

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2e-30  Score=200.23  Aligned_cols=131  Identities=15%  Similarity=0.161  Sum_probs=101.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccccc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFST---------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~~---------   70 (143)
                      ++.++|+|+||||||||+++|+|+++|++|+|.++|..+. .......+.+++.++||||++.  +++..+         
T Consensus        41 Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~-~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~  119 (327)
T PRK11308         41 GKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLL-KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPL  119 (327)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcC-cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHH
Confidence            4679999999999999999999999999999999997432 1122223456678999999973  332111         


Q ss_pred             -----CCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 -----LDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 -----~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                           ... +..+.+.++++.+++.    +.++  +||||+|||+|||||+.+|++|++|   ||++.||...+..++
T Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilD---EPts~LD~~~~~~i~  194 (327)
T PRK11308        120 LINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD---EPVSALDVSVQAQVL  194 (327)
T ss_pred             HHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEE---CCCccCCHHHHHHHH
Confidence                 111 2345678888888762    4444  7999999999999999999999999   999999999887654

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=2.4e-30  Score=179.72  Aligned_cols=129  Identities=16%  Similarity=0.210  Sum_probs=103.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceee-h-hhhccccHHHHHhhcchhcccccccccccC--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFY-L-QAVHNSACRKLTKELCDVIEDYSLVNFSTL--------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~-~-~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~--------   71 (143)
                      +..+.++||||||||||+|.++-+.-|.+|+..+.|... . ....+....++|+.+|+|||.+.++|+.++        
T Consensus        28 getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap  107 (242)
T COG4161          28 GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP  107 (242)
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh
Confidence            457889999999999999999999999999999877421 1 111223346789999999999999875531        


Q ss_pred             ------C-hhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           72 ------D-IQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        72 ------~-~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                            . .+....+.++|+++.+   +++++  +||||||||+|||||+.+|++|++|   ||++-+|.++.-
T Consensus       108 ~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfd---eptaaldpeita  178 (242)
T COG4161         108 CRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFD---EPTAALDPEITA  178 (242)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeec---CcccccCHHHHH
Confidence                  1 2334566777777754   57777  5999999999999999999999999   999999998764

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.97  E-value=2e-30  Score=202.23  Aligned_cols=131  Identities=11%  Similarity=0.076  Sum_probs=100.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.++|..+............++.++|+||++.+|+..+.          
T Consensus        23 Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~  102 (354)
T TIGR02142        23 QGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKR  102 (354)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhc
Confidence            4678999999999999999999999999999999997432100000122346679999999887743221          


Q ss_pred             -C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 -D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 -~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       . .+..+.+.++++.+++.   +..+  +||||||||+|||||+.+|+++|+|   ||++.+|...++.+
T Consensus       103 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLD---EPts~LD~~~~~~l  170 (354)
T TIGR02142       103 ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMD---EPLAALDDPRKYEI  170 (354)
T ss_pred             cChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCCcCCCHHHHHHH
Confidence             1 12234577788888763   3443  7999999999999999999999999   99999999887744

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.97  E-value=2.4e-30  Score=192.09  Aligned_cols=127  Identities=17%  Similarity=0.180  Sum_probs=99.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +........++.++|+||++.+++..++          
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~  102 (242)
T cd03295          27 GEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGED----IREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKL  102 (242)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeE----cCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHH
Confidence            46789999999999999999999999999999999963    3333344556789999999876632111          


Q ss_pred             ---C-hhhHHHHHHHHHHhhhh-----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---D-IQDKESVAKLVKLIDKS-----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~-~~~~~~~~~~l~~l~~~-----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         . .+..+.+.++++.+++.     +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       103 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l  174 (242)
T cd03295         103 LKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD---EPFGALDPITRDQL  174 (242)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCcccCCHHHHHHH
Confidence               1 12234567778887664     2332  7999999999999999999999999   99999999887644

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.5e-30  Score=196.78  Aligned_cols=132  Identities=13%  Similarity=0.103  Sum_probs=100.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccc--------c--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNF--------S--   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~--------~--   69 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..+............++.++||||++.  ++..        .  
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~  112 (290)
T PRK13634         33 GSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPM  112 (290)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHH
Confidence            467999999999999999999999999999999999743210112234456778999999863  4321        0  


Q ss_pred             --cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           70 --TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        70 --~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                        .... +..+.+.++++.+++.    +..+  +||||+|||+|||||+.+|+++++|   ||++.||...+..+.
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllD---EPt~~LD~~~~~~l~  185 (290)
T PRK13634        113 NFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLD---EPTAGLDPKGRKEMM  185 (290)
T ss_pred             HcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHHHH
Confidence              0111 2234677888888763    3333  7999999999999999999999999   999999998877543

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.4e-30  Score=196.50  Aligned_cols=131  Identities=14%  Similarity=0.120  Sum_probs=99.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccc--------c--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNF--------S--   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~--------~--   69 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++|..+...........+++.++||||++.  ++..        .  
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~  112 (286)
T PRK13646         33 GKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPK  112 (286)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHH
Confidence            357899999999999999999999999999999999743211111234567788999999863  4320        0  


Q ss_pred             --cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 --TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 --~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .... +..+.+.++++.+++.    +..+  +||||+|||+|||||+.+|+++++|   ||++.+|...+..+
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlD---EPt~~LD~~~~~~l  184 (286)
T PRK13646        113 NFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD---EPTAGLDPQSKRQV  184 (286)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE---CCcccCCHHHHHHH
Confidence              0111 2235677888888763    2333  7999999999999999999999999   99999999888744

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.97  E-value=3.3e-30  Score=189.61  Aligned_cols=127  Identities=15%  Similarity=0.103  Sum_probs=98.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH---HH-Hhhcchhccccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR---KL-TKELCDVIEDYSLVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~---~~-~~~ig~V~Q~~~l~~~~~-------   70 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..+    ...+..   .. ++.++|++|++.+++..+       
T Consensus        36 Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~  111 (228)
T PRK10584         36 GETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPL----HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVEL  111 (228)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEc----ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHH
Confidence            467999999999999999999999999999999999633    222222   22 356999999987653211       


Q ss_pred             ------CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ------LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ------~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                            .. .+..+.+.++++.+++.   +..+  +||||+||++|||||+.+|+++++|   ||++.+|...++.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~l  185 (228)
T PRK10584        112 PALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFAD---EPTGNLDRQTGDKI  185 (228)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHH
Confidence                  11 12234667778887763   3333  7999999999999999999999999   99999999887754

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.97  E-value=3.2e-30  Score=202.25  Aligned_cols=132  Identities=14%  Similarity=0.143  Sum_probs=101.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc---HHHHH-hhcchhcccccccccccC------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA---CRKLT-KELCDVIEDYSLVNFSTL------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---~~~~~-~~ig~V~Q~~~l~~~~~~------   71 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|+++|.....++...+   .++.+ +.++||||++.++++.++      
T Consensus        50 Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~  129 (382)
T TIGR03415        50 GEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAF  129 (382)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHH
Confidence            46789999999999999999999999999999999852100222222   22333 579999999988753321      


Q ss_pred             -------C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           72 -------D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        72 -------~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                             . .+..+.+.++++.+++.   +.++  +||||||||+|||||+.+|++||+|   ||++.+|..++..+.
T Consensus       130 ~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD---EPts~LD~~~r~~l~  204 (382)
T TIGR03415       130 GLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD---EPFSALDPLIRTQLQ  204 (382)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCccCCHHHHHHHH
Confidence                   1 12235677888888763   3443  7999999999999999999999999   999999999877543

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.97  E-value=2.8e-30  Score=200.31  Aligned_cols=126  Identities=13%  Similarity=0.041  Sum_probs=99.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +... ....++.+||+||++.+++..+           
T Consensus        67 Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~----~~~~-~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~  141 (340)
T PRK13536         67 GECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVP----VPAR-ARLARARIGVVPQFDNLDLEFTVRENLLVFGRY  141 (340)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEE----CCcc-hHHHhccEEEEeCCccCCCCCcHHHHHHHHHHH
Confidence            46789999999999999999999999999999999973    2222 2456778999999987653211           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .. .+..+.+.++++.+++.   +..+  +|+||+|||+||+||+++|++++||   ||++.+|...+..+
T Consensus       142 ~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD---EPt~gLD~~~r~~l  211 (340)
T PRK13536        142 FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD---EPTTGLDPHARHLI  211 (340)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCCCHHHHHHH
Confidence              11 12234566778877764   3333  7999999999999999999999999   99999999887744

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.8e-30  Score=196.39  Aligned_cols=131  Identities=11%  Similarity=0.091  Sum_probs=99.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc--ccccc--------c--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY--SLVNF--------S--   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~--~l~~~--------~--   69 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++|..+...........+++.++||||++  .++..        .  
T Consensus        32 Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~  111 (288)
T PRK13643         32 GSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQ  111 (288)
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHH
Confidence            45799999999999999999999999999999999974321001123456778899999987  34321        0  


Q ss_pred             --cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 --TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 --~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .... +....+.++++.+++.    +..+  +||||+|||+|||||+.+|+++++|   ||++.+|...+..+
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLD---EPt~gLD~~~~~~l  183 (288)
T PRK13643        112 NFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLD---EPTAGLDPKARIEM  183 (288)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEE---CCccCCCHHHHHHH
Confidence              0111 2234567778777762    2333  7999999999999999999999999   99999999887644

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.1e-30  Score=184.36  Aligned_cols=123  Identities=20%  Similarity=0.190  Sum_probs=100.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++++|||||||||||++++|+.+|+.|+|.++|+.+    ....     ..-|+|||+..|+|+.+           
T Consensus        31 ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i----~gPg-----aergvVFQ~~~LlPWl~~~dNvafgL~l  101 (259)
T COG4525          31 GELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRI----EGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQL  101 (259)
T ss_pred             CCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEec----cCCC-----ccceeEeccCccchhhHHHHHHHHHHHh
Confidence            357899999999999999999999999999999999733    2211     23689999999887543           


Q ss_pred             --CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 --LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 --~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                        +.+ +..+.+.+.+..+++.   .+++  +|||+||||.|||||+.+|++|++|   ||+.-+|.-+.|.+.
T Consensus       102 ~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD---EPfgAlDa~tRe~mQ  172 (259)
T COG4525         102 RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD---EPFGALDALTREQMQ  172 (259)
T ss_pred             cCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeec---CchhhHHHHHHHHHH
Confidence              222 3456778888888874   3444  7999999999999999999999999   999999988877653

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.96  E-value=3.2e-30  Score=197.27  Aligned_cols=126  Identities=11%  Similarity=0.016  Sum_probs=98.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    .. .....++.++|+||++.+++..+           
T Consensus        30 Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~-~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  104 (303)
T TIGR01288        30 GECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPV----PS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRY  104 (303)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC----cc-cHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHH
Confidence            467899999999999999999999999999999999632    22 22445678999999987653211           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .. .+..+.+.++++.+++.   +..+  +||||||||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       105 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~gLD~~~~~~l  174 (303)
T TIGR01288       105 FGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILD---EPTTGLDPHARHLI  174 (303)
T ss_pred             cCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence              11 11223456677777653   3333  7999999999999999999999999   99999999887743

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=3.4e-30  Score=179.49  Aligned_cols=125  Identities=10%  Similarity=0.009  Sum_probs=106.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----------c
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----------T   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----------~   70 (143)
                      ++.++|.||||||||||+|+++.+++|++|+++|.|+    +++...+...|+.++|+.|.+.||+..           .
T Consensus        29 Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge----~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r  104 (223)
T COG4619          29 GEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGE----DVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIR  104 (223)
T ss_pred             CceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCc----cccccChHHHHHHHHHHHcCccccccchhhccccchHHh
Confidence            5688999999999999999999999999999999997    677888899999999999999987311           1


Q ss_pred             CChhhHHHHHHHHHHhhhhC------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           71 LDIQDKESVAKLVKLIDKSN------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        71 ~~~~~~~~~~~~l~~l~~~~------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                      -...+...+.+.+.++++..      ...+||||+||++++|-|...|++||||   |+++-||..+.+
T Consensus       105 ~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD---E~TsALD~~nkr  170 (223)
T COG4619         105 NRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD---EITSALDESNKR  170 (223)
T ss_pred             ccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec---CchhhcChhhHH
Confidence            12345677888899887642      2237999999999999999999999999   999999987665

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.96  E-value=3.9e-30  Score=187.30  Aligned_cols=129  Identities=16%  Similarity=0.193  Sum_probs=99.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+..  ........++.++|++|++.+++..+           
T Consensus        26 G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~  103 (213)
T cd03262          26 GEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTD--DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIK  103 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCc--cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHH
Confidence            45789999999999999999999999999999999963310  11233456678999999987653211           


Q ss_pred             ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         ... +..+.+.++++.+++.   +..+  +||||+|||++|||++.+|+++++|   ||++.+|...++.+
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP~~~LD~~~~~~l  174 (213)
T cd03262         104 VKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD---EPTSALDPELVGEV  174 (213)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHH
Confidence               111 1234566777777653   3333  7999999999999999999999999   99999999887644

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.96  E-value=4.3e-30  Score=189.58  Aligned_cols=127  Identities=15%  Similarity=0.146  Sum_probs=98.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc---HHHHHhhcchhcccccccccccC-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA---CRKLTKELCDVIEDYSLVNFSTL-------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---~~~~~~~ig~V~Q~~~l~~~~~~-------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    ....   ....++.++|++|++.+++..+.       
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~----~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~  106 (233)
T cd03258          31 GEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDL----TLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP  106 (233)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc----ccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHH
Confidence            467899999999999999999999999999999999733    2222   22346779999999877642211       


Q ss_pred             ------Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ------DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ------~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                            .. ...+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD---EP~~~LD~~~~~~l  179 (233)
T cd03258         107 LEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCD---EATSALDPETTQSI  179 (233)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCCCcCCHHHHHHH
Confidence                  11 1234567778887763   3333  7999999999999999999999999   99999999887743

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.96  E-value=2.7e-30  Score=215.81  Aligned_cols=129  Identities=12%  Similarity=0.081  Sum_probs=105.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-Chhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-DIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~~~~   75 (143)
                      +..+||+||||||||||+|+|+|+++|++|+|.++|.    ++...+...+|+.++||+|++.+|.-     ... .+.+
T Consensus       479 Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~----~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~  554 (686)
T TIGR03797       479 GEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQ----DLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLT  554 (686)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE----EcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCC
Confidence            5689999999999999999999999999999999997    56677888899999999999998731     111 1123


Q ss_pred             HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336           76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK  137 (143)
Q Consensus        76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~  137 (143)
                      .+.+.++++.+++.                .+..+|||||||++||||+..+|+++++|   |||+.+|..+.+++++
T Consensus       555 ~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLD---EpTS~LD~~te~~i~~  629 (686)
T TIGR03797       555 LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD---EATSALDNRTQAIVSE  629 (686)
T ss_pred             HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHHHH
Confidence            44566666665431                12337999999999999999999999999   9999999998876643

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.96  E-value=4.3e-30  Score=187.01  Aligned_cols=126  Identities=15%  Similarity=0.206  Sum_probs=98.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc--------C--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST--------L--   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~--------~--   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +.....  .++.++|++|++.+++..+        .  
T Consensus        24 Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~----~~~~~~--~~~~i~~~~q~~~~~~~~tv~enl~~~~~~   97 (211)
T cd03298          24 GEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVD----VTAAPP--ADRPVSMLFQENNLFAHLTVEQNVGLGLSP   97 (211)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE----cCcCCH--hHccEEEEecccccCCCCcHHHHHhccccc
Confidence            46789999999999999999999999999999999963    322222  2467999999987653211        0  


Q ss_pred             ----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           72 ----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        72 ----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                          .....+.+.++++.+++.   +..+  +|+||+||++||||++.+|+++++|   ||++.+|...++.+.
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllD---EP~~~LD~~~~~~l~  168 (211)
T cd03298          98 GLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLD---EPFAALDPALRAEML  168 (211)
T ss_pred             ccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHHH
Confidence                112344677788887763   3333  7999999999999999999999999   999999998887543

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.96  E-value=4.8e-30  Score=187.05  Aligned_cols=122  Identities=19%  Similarity=0.167  Sum_probs=96.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--cc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--ST---------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--~~---------   70 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|.    ++.     .+++.++|++|++.+...  .+         
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~----~~~-----~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~   95 (213)
T cd03235          25 GEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK----PLE-----KERKRIGYVPQRRSIDRDFPISVRDVVLMGL   95 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCc----cHH-----HHHhheEEeccccccccCCCCcHHHHHHhcc
Confidence            4578999999999999999999999999999999985    221     356679999998764210  00         


Q ss_pred             C---------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 L---------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ~---------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .         .....+.+.++++.+++.   +..+  +||||+|||+|||||+.+|+++++|   ||++.+|....+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~~l  171 (213)
T cd03235          96 YGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLD---EPFAGVDPKTQEDI  171 (213)
T ss_pred             ccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence            0         112334677788887763   3333  7999999999999999999999999   99999999887643

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.1e-30  Score=190.80  Aligned_cols=127  Identities=14%  Similarity=0.147  Sum_probs=99.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c----CC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T----LD   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~----~~   72 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+...+++.++|++|++.+++..     .    ..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~  104 (241)
T PRK14250         29 GAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVD----IKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLK  104 (241)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE----hhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhc
Confidence            45789999999999999999999999999999999963    33334445667899999998765310     0    01


Q ss_pred             hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           73 IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 ~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ......+.++++.+++.    +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       105 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~l  170 (241)
T PRK14250        105 GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLD---EPTSALDPTSTEII  170 (241)
T ss_pred             CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence            11234566777777662    3333  7999999999999999999999999   99999999887754

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=9.6e-31  Score=191.09  Aligned_cols=125  Identities=14%  Similarity=0.102  Sum_probs=99.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      ++.++|||||||||||++++|+|+++|++|+|.++|+    ++...++.++. ..|+.-||.+.+|+.+++         
T Consensus        30 Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~----~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~  105 (250)
T COG0411          30 GEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGR----DITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAH  105 (250)
T ss_pred             CeEEEEECCCCCCceeeeeeecccccCCCceEEECCc----ccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhh
Confidence            4679999999999999999999999999999999997    55666655544 458888999888743210         


Q ss_pred             -----------------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhh
Q 032336           72 -----------------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLA  129 (143)
Q Consensus        72 -----------------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~  129 (143)
                                       ..+..+++.++|+++++.   +...  +|+|||++++||||||.+|++||||   ||++.+-.
T Consensus       106 ~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLD---EPaAGln~  182 (250)
T COG0411         106 ARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLD---EPAAGLNP  182 (250)
T ss_pred             hhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEec---CccCCCCH
Confidence                             123356777888888764   3333  7999999999999999999999999   99988766


Q ss_pred             hhhh
Q 032336          130 EVQE  133 (143)
Q Consensus       130 ~~~~  133 (143)
                      .-..
T Consensus       183 ~e~~  186 (250)
T COG0411         183 EETE  186 (250)
T ss_pred             HHHH
Confidence            5443

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.96  E-value=2.8e-30  Score=189.20  Aligned_cols=122  Identities=17%  Similarity=0.163  Sum_probs=96.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +.     ..++.++|++|++.+++..+.          
T Consensus        30 G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~-----~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  100 (220)
T cd03293          30 GEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEP----VT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLEL  100 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE----Cc-----cccCcEEEEecccccccCCCHHHHHHHHHHH
Confidence            45789999999999999999999999999999999963    22     134569999999876532211          


Q ss_pred             ---C-hhhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---D-IQDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~-~~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         . ....+.+.++++.+++.   +..  .+||||+|||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       101 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD---EPt~~LD~~~~~~~  170 (220)
T cd03293         101 QGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD---EPFSALDALTREQL  170 (220)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC---CCCCCCCHHHHHHH
Confidence               1 11234567778887763   333  37999999999999999999999999   99999999888754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.96  E-value=3.5e-30  Score=189.38  Aligned_cols=127  Identities=10%  Similarity=0.028  Sum_probs=99.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc-----ccCCceEEEcceeehhhhcccc--HHHHHhhcchhcccccccccccC---
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL-----SLIGSNICCSNVFYLQAVHNSA--CRKLTKELCDVIEDYSLVNFSTL---   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~-----~~~~G~i~~~g~~~~~~~~~~~--~~~~~~~ig~V~Q~~~l~~~~~~---   71 (143)
                      +..++|+||||||||||+++|+|++     +|++|+|.++|..+    ....  ...+++.++|++|++.++. .++   
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~----~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~  100 (227)
T cd03260          26 GEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDI----YDLDVDVLELRRRVGMVFQKPNPFP-GSIYDN  100 (227)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEh----hhcchHHHHHHhhEEEEecCchhcc-ccHHHH
Confidence            4678999999999999999999999     99999999999632    2222  3456678999999987651 110   


Q ss_pred             ----------Ch--hhHHHHHHHHHHhhhh---CC----CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           72 ----------DI--QDKESVAKLVKLIDKS---NG----YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        72 ----------~~--~~~~~~~~~l~~l~~~---~~----~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                                ..  +..+.+.++++.+++.   +.    ..+||||+|||+||||++.+|+++++|   ||++.+|...+
T Consensus       101 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EPt~~LD~~~~  177 (227)
T cd03260         101 VAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLD---EPTSALDPIST  177 (227)
T ss_pred             HHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHH
Confidence                      11  1234567778887652   22    347999999999999999999999999   99999999888


Q ss_pred             hhcc
Q 032336          133 EKYI  136 (143)
Q Consensus       133 ~~~~  136 (143)
                      +.+.
T Consensus       178 ~~l~  181 (227)
T cd03260         178 AKIE  181 (227)
T ss_pred             HHHH
Confidence            7543

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.6e-30  Score=195.05  Aligned_cols=131  Identities=17%  Similarity=0.108  Sum_probs=98.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccc----------c
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNF----------S   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~----------~   69 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+............++.++|++|++.  ++..          .
T Consensus        33 Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~  112 (287)
T PRK13641         33 GSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPK  112 (287)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHH
Confidence            467899999999999999999999999999999999743211011123455678999999863  3310          0


Q ss_pred             --cCC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 --TLD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 --~~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        ... .+..+.+.++++.+++.    +..+  +||||||||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLD---EPt~gLD~~~~~~l  184 (287)
T PRK13641        113 NFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLD---EPAAGLDPEGRKEM  184 (287)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CCCCCCCHHHHHHH
Confidence              011 12234577788887763    3333  7999999999999999999999999   99999999887644

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.96  E-value=3.8e-30  Score=215.54  Aligned_cols=129  Identities=16%  Similarity=0.097  Sum_probs=104.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+|+.++||+|++.+|.-     ...  ...
T Consensus       505 Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~----~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~  580 (710)
T TIGR03796       505 GQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGI----PREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTI  580 (710)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE----eHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCC
Confidence            5689999999999999999999999999999999997    56667788899999999999998731     111  112


Q ss_pred             hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336           75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK  137 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~  137 (143)
                      +.+.+.++++..++       .         .+..+|||||||++||||+..+|+++++|   |||+.+|..+.+++++
T Consensus       581 ~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLD---EptS~LD~~te~~i~~  656 (710)
T TIGR03796       581 PDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILD---EATSALDPETEKIIDD  656 (710)
T ss_pred             CHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEE---CccccCCHHHHHHHHH
Confidence            33455566665432       1         23337999999999999999999999999   9999999988876543

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.96  E-value=5.2e-30  Score=188.94  Aligned_cols=127  Identities=14%  Similarity=0.094  Sum_probs=97.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHH-HHhhcchhccccccccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRK-LTKELCDVIEDYSLVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-~~~~ig~V~Q~~~l~~~~~----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+... .++.++|++|++.+++..+          
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~  101 (232)
T cd03218          26 GEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQD----ITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLE  101 (232)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe----cccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHH
Confidence            45789999999999999999999999999999999963    22223333 3456999999987653211          


Q ss_pred             ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         ... +....+.++++.+++.   +..+  +|+||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~~  172 (232)
T cd03218         102 IRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD---EPFAGVDPIAVQDI  172 (232)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCcccCCHHHHHHH
Confidence               111 1234566777777663   3333  7999999999999999999999999   99999999887743

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.96  E-value=4.5e-30  Score=210.88  Aligned_cols=128  Identities=15%  Similarity=0.187  Sum_probs=104.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC---Ch
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL---DI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~---~~   73 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++||+|++.+|..     ...   ..
T Consensus       369 G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~----~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~  444 (582)
T PRK11176        369 GKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH----DLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQ  444 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCE----EhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCC
Confidence            4679999999999999999999999999999999997    55667778889999999999998731     111   11


Q ss_pred             hhHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           74 QDKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        74 ~~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .+.+.+.++++.+++       .         .+..+||||+||++||||+..+|+++++|   ||++.+|.++..+++
T Consensus       445 ~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililD---EptsaLD~~t~~~i~  520 (582)
T PRK11176        445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILD---EATSALDTESERAIQ  520 (582)
T ss_pred             CCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEE---CccccCCHHHHHHHH
Confidence            234566666666542       1         12237999999999999999999999999   999999999887654

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.96  E-value=7.4e-30  Score=186.92  Aligned_cols=127  Identities=12%  Similarity=0.068  Sum_probs=96.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHH-HHhhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRK-LTKELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-~~~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+... .++.++|+||++.+++..+.         
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~  101 (222)
T cd03224          26 GEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRD----ITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAY  101 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE----cCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhh
Confidence            46799999999999999999999999999999999963    33333333 34679999999876642211         


Q ss_pred             ---ChhhHHHHHHHHHHhh-hh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---DIQDKESVAKLVKLID-KS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~~~~~~~~~~~l~~l~-~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         ..+....+.++++.++ +.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       102 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l  171 (222)
T cd03224         102 ARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD---EPSEGLAPKIVEEI  171 (222)
T ss_pred             hcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCcccCCHHHHHHH
Confidence               1112234556666663 32   3333  7999999999999999999999999   99999999887644

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.96  E-value=4.7e-30  Score=193.41  Aligned_cols=131  Identities=16%  Similarity=0.190  Sum_probs=98.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH-HhhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+. .......... ++.++|++|++.+++..++         
T Consensus        50 Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~-~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  128 (269)
T cd03294          50 GEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIA-AMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE  128 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc-ccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence            4578999999999999999999999999999999996321 1111111122 3569999999876632111         


Q ss_pred             ----Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           72 ----DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        72 ----~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                          .. +..+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|....+.+.
T Consensus       129 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLD---EPt~~LD~~~~~~l~  200 (269)
T cd03294         129 VQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD---EAFSALDPLIRREMQ  200 (269)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHHHHHH
Confidence                11 1234567778887763   3333  7999999999999999999999999   999999998877443

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.96  E-value=6.2e-30  Score=192.70  Aligned_cols=130  Identities=12%  Similarity=0.037  Sum_probs=97.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++|..+. .........+++.++|+||++.+++..++          
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~-~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~  111 (269)
T PRK11831         33 GKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIP-AMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE  111 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc-ccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999996321 11111123346679999999876532110          


Q ss_pred             ----Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ----DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ----~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          .. .....+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~l  182 (269)
T PRK11831        112 HTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD---EPFVGQDPITMGVL  182 (269)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHHHHH
Confidence                11 1123456677777763   3333  7999999999999999999999999   99999999887744

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.96  E-value=5.3e-30  Score=186.43  Aligned_cols=123  Identities=12%  Similarity=0.072  Sum_probs=96.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++..    ..++.++|++|++.+++..+           
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~----~~~~----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~   97 (210)
T cd03269          26 GEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK----PLDI----AARNRIGYLPEERGLYPKMKVIDQLVYLAQL   97 (210)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCC----chhH----HHHccEEEeccCCcCCcCCcHHHHHHHHHHH
Confidence            4578999999999999999999999999999999996    2221    34567999999987653211           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .. .+..+.+.++++.+++.   +..+  +||||+|||++|||++.+|+++++|   ||++.+|...++.+
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD---EP~~~LD~~~~~~~  167 (210)
T cd03269          98 KGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD---EPFSGLDPVNVELL  167 (210)
T ss_pred             cCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence              11 12234567777777753   3333  7999999999999999999999999   99999998877643

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.96  E-value=7.7e-30  Score=195.01  Aligned_cols=126  Identities=12%  Similarity=0.044  Sum_probs=100.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..    +.. ....+++.++|+||++.+++..+           
T Consensus        28 Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~----~~~-~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~  102 (301)
T TIGR03522        28 GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGED----VLQ-NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGI  102 (301)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE----ccc-ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHH
Confidence            46799999999999999999999999999999999963    222 23456778999999987764221           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .. .+..+.+.++++.+++.   +..+  +|+||+|||++|+|++.+|+++++|   ||++.+|...++.+
T Consensus       103 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD---EPt~gLD~~~~~~l  172 (301)
T TIGR03522       103 YGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD---EPTTGLDPNQLVEI  172 (301)
T ss_pred             cCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence              11 12234577788888763   4444  7999999999999999999999999   99999999887643

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.96  E-value=5e-30  Score=211.08  Aligned_cols=128  Identities=13%  Similarity=0.089  Sum_probs=104.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-Chhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-DIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~~~~   75 (143)
                      +..++|+|+||||||||+++|+|+++|++|+|.++|.    ++...+.+.++++|+||+|++.+|..     ... ...+
T Consensus       367 Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~----~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~  442 (592)
T PRK10790        367 RGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGR----PLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDIS  442 (592)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCE----EhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCC
Confidence            4689999999999999999999999999999999997    56677888999999999999998831     111 1223


Q ss_pred             HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .+.+.++++.+++.                .+..+||||+||++||||+..+|+++++|   ||++.+|.++.+.+.
T Consensus       443 d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlD---Epts~LD~~t~~~i~  516 (592)
T PRK10790        443 EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILD---EATANIDSGTEQAIQ  516 (592)
T ss_pred             HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEe---CCcccCCHHHHHHHH
Confidence            34566676665431                12237999999999999999999999999   999999999877554

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5.9e-30  Score=192.39  Aligned_cols=127  Identities=12%  Similarity=0.080  Sum_probs=99.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +.......+++.++|++|++.+++..+           
T Consensus        37 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  112 (265)
T PRK10575         37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQP----LESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYP  112 (265)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEe----hhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCccc
Confidence            46789999999999999999999999999999999963    333344556678999999866542110           


Q ss_pred             C-------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 L-------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ~-------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .       .....+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++|+|   ||++.+|....+.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~~  186 (265)
T PRK10575        113 WHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD---EPTSALDIAHQVDV  186 (265)
T ss_pred             ccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence            0       112234567788887763   3333  7999999999999999999999999   99999999887643

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.6e-30  Score=197.71  Aligned_cols=132  Identities=11%  Similarity=0.076  Sum_probs=100.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhh------------ccccHHHHHhhcchhccccc--ccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAV------------HNSACRKLTKELCDVIEDYS--LVN   67 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~------------~~~~~~~~~~~ig~V~Q~~~--l~~   67 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++|..+....            .......+++.++||||++.  +|.
T Consensus        52 Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~  131 (320)
T PRK13631         52 NKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK  131 (320)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc
Confidence            4679999999999999999999999999999999997442210            00123567788999999873  442


Q ss_pred             c--------c----cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhh
Q 032336           68 F--------S----TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSL  128 (143)
Q Consensus        68 ~--------~----~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~  128 (143)
                      .        .    .... +....+.++++.+++.    +..+  +||||+|||+|||||+.+|+++|+|   ||++.+|
T Consensus       132 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLD---EPtsgLD  208 (320)
T PRK13631        132 DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFD---EPTAGLD  208 (320)
T ss_pred             chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CCccCCC
Confidence            1        0    0111 2234567778887763    2333  7999999999999999999999999   9999999


Q ss_pred             hhhhhhcc
Q 032336          129 AEVQEKYI  136 (143)
Q Consensus       129 ~~~~~~~~  136 (143)
                      ...++.++
T Consensus       209 ~~~~~~l~  216 (320)
T PRK13631        209 PKGEHEMM  216 (320)
T ss_pred             HHHHHHHH
Confidence            99887553

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=6.4e-30  Score=190.93  Aligned_cols=127  Identities=15%  Similarity=0.122  Sum_probs=97.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH-HhhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+.... +..++|+||++.+++..++         
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~  106 (255)
T PRK11300         31 QEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQH----IEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQH  106 (255)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEE----CCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhh
Confidence            46799999999999999999999999999999999963    333333333 3458899999876532110         


Q ss_pred             -----------------C---hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccch
Q 032336           72 -----------------D---IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQ  126 (143)
Q Consensus        72 -----------------~---~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~  126 (143)
                                       .   .+..+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~  183 (255)
T PRK11300        107 QQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD---EPAAG  183 (255)
T ss_pred             ccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccC
Confidence                             0   01123456677777663   3333  7999999999999999999999999   99999


Q ss_pred             hhhhhhhhc
Q 032336          127 SLAEVQEKY  135 (143)
Q Consensus       127 ~~~~~~~~~  135 (143)
                      +|...+..+
T Consensus       184 LD~~~~~~l  192 (255)
T PRK11300        184 LNPKETKEL  192 (255)
T ss_pred             CCHHHHHHH
Confidence            999887643

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.96  E-value=4.4e-30  Score=187.16  Aligned_cols=125  Identities=18%  Similarity=0.159  Sum_probs=96.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    ...+.  .++.++|++|++.+++..+           
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~----~~~~~--~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~   99 (213)
T cd03301          26 GEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV----TDLPP--KDRDIAMVFQNYALYPHMTVYDNIAFGLKL   99 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC----CcCCc--ccceEEEEecChhhccCCCHHHHHHHHHHh
Confidence            457899999999999999999999999999999999633    22221  1356999999987653211           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .. .+..+.+.++++.+++.   +..+  +||||+||+++|||++.+|+++++|   ||++.+|...++.+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD---EPt~~LD~~~~~~l  169 (213)
T cd03301         100 RKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD---EPLSNLDAKLRVQM  169 (213)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence              11 12234566777877663   3333  7999999999999999999999999   99999999887754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.96  E-value=3.2e-30  Score=182.79  Aligned_cols=109  Identities=16%  Similarity=0.122  Sum_probs=88.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..+    .... ..+++.++|+||++.+++..+.  .  +.   
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~----~~~~-~~~~~~i~~~~q~~~~~~~~tv--~--~~---   93 (173)
T cd03230          26 GEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI----KKEP-EEVKRRIGYLPEEPSLYENLTV--R--EN---   93 (173)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc----ccch-HhhhccEEEEecCCccccCCcH--H--HH---
Confidence            467899999999999999999999999999999999633    2222 4456789999999876543221  1  11   


Q ss_pred             HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       +.         +|+||+|||+||||++.+|+++++|   ||++.+|...++++
T Consensus        94 -~~---------LS~G~~qrv~laral~~~p~illlD---EPt~~LD~~~~~~l  134 (173)
T cd03230          94 -LK---------LSGGMKQRLALAQALLHDPELLILD---EPTSGLDPESRREF  134 (173)
T ss_pred             -hh---------cCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCCHHHHHHH
Confidence             11         8999999999999999999999999   99999999887744

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.96  E-value=1.1e-29  Score=185.41  Aligned_cols=131  Identities=15%  Similarity=0.196  Sum_probs=98.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----------
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-----------   71 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-----------   71 (143)
                      ..++|+||||||||||+++|+|+++|++|+|.++|..+............++.++|++|++.+++..+.           
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~  103 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK  103 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence            468999999999999999999999999999999996331100001123456779999999876632211           


Q ss_pred             C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           72 D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        72 ~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      . ....+.+.++++.+++.   +..+  +||||||||+||||++.+|+++++|   ||++.+|...++.+.
T Consensus       104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~~l~  171 (214)
T cd03297         104 RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLD---EPFSALDRALRLQLL  171 (214)
T ss_pred             CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHHH
Confidence            1 12234567778887763   3333  7999999999999999999999999   999999998877543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.96  E-value=1.1e-29  Score=184.02  Aligned_cols=126  Identities=10%  Similarity=0.049  Sum_probs=99.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC--------Ch
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL--------DI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~--------~~   73 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..+    ... ...+++.++|++|++.+++..+.        ..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~----~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~  100 (201)
T cd03231          26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL----DFQ-RDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD  100 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec----ccc-cHHhhhheEEeccccccCCCcCHHHHHHhhccc
Confidence            467999999999999999999999999999999999632    211 23466789999998776532221        11


Q ss_pred             hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           74 QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        74 ~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ...+.+.++++.+++.   +..+  +||||+||+++|||++.+|+++++|   ||++.+|...++.+
T Consensus       101 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~~LD~~~~~~l  164 (201)
T cd03231         101 HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD---EPTTALDKAGVARF  164 (201)
T ss_pred             ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHH
Confidence            1234667778887763   3333  7999999999999999999999999   99999999887754

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.96  E-value=9.6e-30  Score=188.18  Aligned_cols=127  Identities=13%  Similarity=0.114  Sum_probs=97.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    ..... ..++.++|++|++.+++..+           
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i----~~~~~-~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~  101 (236)
T TIGR03864        27 GEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDL----RRAPR-AALARLGVVFQQPTLDLDLSVRQNLRYHAAL  101 (236)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc----ccCCh-hhhhhEEEeCCCCCCcccCcHHHHHHHHHHh
Confidence            467899999999999999999999999999999999633    22222 23357999999977642211           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                        .. .+..+.+.++++.+++.   +..+  +||||+||++||||++.+|+++++|   ||++.+|...++.+.
T Consensus       102 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EP~~~LD~~~~~~l~  172 (236)
T TIGR03864       102 HGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD---EPTVGLDPASRAAIV  172 (236)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccCCCHHHHHHHH
Confidence              11 11234566777777753   3333  7999999999999999999999999   999999999887543

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.96  E-value=1.1e-29  Score=186.85  Aligned_cols=127  Identities=9%  Similarity=0.010  Sum_probs=99.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----------c
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----------T   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----------~   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++|++|++.+++..           .
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~  108 (225)
T PRK10247         33 GEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE----DISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIR  108 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCE----EcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhc
Confidence            4578999999999999999999999999999999996    333334445667899999998765310           0


Q ss_pred             CChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 LDIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ~~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ......+.+.++++.+++.    +..+  +|+||+|||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l  176 (225)
T PRK10247        109 NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD---EITSALDESNKHNV  176 (225)
T ss_pred             CCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence            0111234566778887762    3333  7999999999999999999999999   99999999887744

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8.3e-30  Score=193.00  Aligned_cols=128  Identities=13%  Similarity=0.082  Sum_probs=99.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+...+++.++|+||++. ++...+          
T Consensus        33 Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~----i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~  108 (279)
T PRK13635         33 GEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMV----LSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLE  108 (279)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE----CCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHh
Confidence            45789999999999999999999999999999999973    333444556678999999973 321111          


Q ss_pred             ---CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 ---LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 ---~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                         .. .+..+.+.++++.+++.   +..+  +||||+|||+|||||+.+|+++++|   ||++.+|...++.++
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt~gLD~~~~~~l~  180 (279)
T PRK13635        109 NIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILD---EATSMLDPRGRREVL  180 (279)
T ss_pred             hCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHHH
Confidence               11 12234577778877763   2333  7999999999999999999999999   999999999887554

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=7e-30  Score=195.58  Aligned_cols=132  Identities=16%  Similarity=0.133  Sum_probs=99.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhh--------------hc------cccHHHHHhhcchhcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQA--------------VH------NSACRKLTKELCDVIE   61 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~--------------~~------~~~~~~~~~~ig~V~Q   61 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++|......              +.      ......+++.+|||||
T Consensus        33 Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q  112 (305)
T PRK13651         33 GEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQ  112 (305)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEee
Confidence            357999999999999999999999999999999987532100              00      0123456788999999


Q ss_pred             ccc--ccc--------cc----cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCC
Q 032336           62 DYS--LVN--------FS----TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYP  120 (143)
Q Consensus        62 ~~~--l~~--------~~----~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~  120 (143)
                      ++.  ++.        +.    .... +..+.+.++++.+++.    +..+  +||||+|||+||+||+.+|+++++|  
T Consensus       113 ~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLD--  190 (305)
T PRK13651        113 FAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFD--  190 (305)
T ss_pred             CcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEe--
Confidence            863  331        00    0111 2345678888888763    3333  7999999999999999999999999  


Q ss_pred             ccccchhhhhhhhhcc
Q 032336          121 SFHLFQSLAEVQEKYI  136 (143)
Q Consensus       121 ~~~~~~~~~~~~~~~~  136 (143)
                       ||++.+|...+..+.
T Consensus       191 -EPt~~LD~~~~~~l~  205 (305)
T PRK13651        191 -EPTAGLDPQGVKEIL  205 (305)
T ss_pred             -CCCCCCCHHHHHHHH
Confidence             999999998876543

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.96  E-value=9.3e-30  Score=188.74  Aligned_cols=128  Identities=13%  Similarity=0.110  Sum_probs=99.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHH-HHhhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRK-LTKELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-~~~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+... .++.++|++|++.+++..++         
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~  103 (242)
T TIGR03411        28 GELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTD----LTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALP  103 (242)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCee----cCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhh
Confidence            45789999999999999999999999999999999963    33333332 34569999999876632110         


Q ss_pred             -------------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           72 -------------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        72 -------------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                                   ..+....+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllD---EPt~~LD~~~~~  180 (242)
T TIGR03411       104 RDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLD---EPVAGMTDEETE  180 (242)
T ss_pred             cccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCccCCCHHHHH
Confidence                         012334567778887763   3333  7999999999999999999999999   999999999887


Q ss_pred             hcc
Q 032336          134 KYI  136 (143)
Q Consensus       134 ~~~  136 (143)
                      .+.
T Consensus       181 ~l~  183 (242)
T TIGR03411       181 KTA  183 (242)
T ss_pred             HHH
Confidence            543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.1e-29  Score=191.48  Aligned_cols=129  Identities=12%  Similarity=0.056  Sum_probs=97.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc--ccc----------c
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL--VNF----------S   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l--~~~----------~   69 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+.  ........+++.++|++|++.+  +..          .
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~--~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~  104 (271)
T PRK13638         27 SPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLD--YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLR  104 (271)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcc--cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHH
Confidence            4578999999999999999999999999999999997431  1122334566789999998752  210          0


Q ss_pred             --cCCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 --TLDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 --~~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .... +..+.+.++++.+++.   +..+  +||||+|||+|||||+.+|+++|+|   ||++.+|...++.+
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLD---EPt~~LD~~~~~~l  175 (271)
T PRK13638        105 NLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLD---EPTAGLDPAGRTQM  175 (271)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence              0111 1223456777777653   3333  7999999999999999999999999   99999999887644

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.96  E-value=1.1e-29  Score=190.27  Aligned_cols=122  Identities=11%  Similarity=0.105  Sum_probs=97.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC--------Ch
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL--------DI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~--------~~   73 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++     ..+++.++|++|++.+++..++        ..
T Consensus        38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~----~~-----~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~  108 (257)
T PRK11247         38 GQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA----PL-----AEAREDTRLMFQDARLLPWKKVIDNVGLGLKG  108 (257)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE----EH-----HHhhCceEEEecCccCCCCCcHHHHHHhcccc
Confidence            4578999999999999999999999999999999885    22     2345679999999877643221        11


Q ss_pred             hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           74 QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        74 ~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .....+.++++.+++.   +..+  +||||+|||+|||||+.+|+++++|   ||++.+|...+..+
T Consensus       109 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD---EPt~~LD~~~~~~l  172 (257)
T PRK11247        109 QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD---EPLGALDALTRIEM  172 (257)
T ss_pred             hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHH
Confidence            1234567778887763   3333  7999999999999999999999999   99999999887643

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.96  E-value=1.1e-29  Score=188.19  Aligned_cols=129  Identities=15%  Similarity=0.179  Sum_probs=99.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++|..+..  .......+++.++|++|++.+++..+           
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  104 (240)
T PRK09493         27 GEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND--PKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLR  104 (240)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCc--CChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHH
Confidence            45789999999999999999999999999999999963311  11122345678999999977653211           


Q ss_pred             ---CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ---LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ---~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         .. .+..+.+.++++.+++.   +..+  +|+||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP~~~LD~~~~~~l  175 (240)
T PRK09493        105 VRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD---EPTSALDPELRHEV  175 (240)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence               01 11234567778877763   3333  7999999999999999999999999   99999999988754

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.96  E-value=6.9e-30  Score=189.26  Aligned_cols=125  Identities=18%  Similarity=0.160  Sum_probs=96.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    .....  .++.++|++|++.+++..++          
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~----~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  101 (239)
T cd03296          28 GELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA----TDVPV--QERNVGFVFQHYALFRHMTVFDNVAFGLRV  101 (239)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC----CcCCc--cccceEEEecCCcccCCCCHHHHHhhhhhh
Confidence            457899999999999999999999999999999999632    22211  24569999999876532110          


Q ss_pred             -------Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 -------DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 -------~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                             .. +..+.+.++++.+++.   +..+  +|+||+|||+|||||+.+|+++++|   ||++.+|....+.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EP~~~LD~~~~~~l  175 (239)
T cd03296         102 KPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD---EPFGALDAKVRKEL  175 (239)
T ss_pred             ccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence                   11 1124566777777663   3333  7999999999999999999999999   99999999887744

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.7e-29  Score=189.93  Aligned_cols=127  Identities=13%  Similarity=0.129  Sum_probs=99.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++.......+++.++|+||++.+++..+           
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~  108 (265)
T PRK10253         33 GHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE----HIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYP  108 (265)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCE----EhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccc
Confidence            4578999999999999999999999999999999996    3333444556678999999976542110           


Q ss_pred             C-------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 L-------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ~-------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .       .......+.++++.+++.   +..+  +||||+||++||||++.+|+++++|   ||++.+|...++.+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD---EPt~gLD~~~~~~l  182 (265)
T PRK10253        109 HQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD---EPTTWLDISHQIDL  182 (265)
T ss_pred             ccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHH
Confidence            0       112234567788887763   3443  7999999999999999999999999   99999999877644

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8.7e-30  Score=196.64  Aligned_cols=128  Identities=12%  Similarity=0.076  Sum_probs=98.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc----cCCceEEEcceeehhhhccccHHHH---H-hhcchhccccc--cccccc-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS----LIGSNICCSNVFYLQAVHNSACRKL---T-KELCDVIEDYS--LVNFST-   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~----~~~G~i~~~g~~~~~~~~~~~~~~~---~-~~ig~V~Q~~~--l~~~~~-   70 (143)
                      ++.++|+||||||||||+++|+|+++    |++|+|.++|..    +...+.+.+   + +.++||||++.  +.+..+ 
T Consensus        33 Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~----i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v  108 (326)
T PRK11022         33 GEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD----LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTV  108 (326)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE----CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCH
Confidence            46799999999999999999999997    489999999973    333333322   2 46999999974  332111 


Q ss_pred             -------------CC-hhhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhh
Q 032336           71 -------------LD-IQDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSL  128 (143)
Q Consensus        71 -------------~~-~~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~  128 (143)
                                   .. .+..+.+.++++.+++.      +.++  +||||+|||+|||||+.+|++|++|   ||++.+|
T Consensus       109 ~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilD---EPts~LD  185 (326)
T PRK11022        109 GFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIAD---EPTTALD  185 (326)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEe---CCCCCCC
Confidence                         11 23345678888888873      3344  7999999999999999999999999   9999999


Q ss_pred             hhhhhhcc
Q 032336          129 AEVQEKYI  136 (143)
Q Consensus       129 ~~~~~~~~  136 (143)
                      ..++..++
T Consensus       186 ~~~~~~il  193 (326)
T PRK11022        186 VTIQAQII  193 (326)
T ss_pred             HHHHHHHH
Confidence            99887543

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.96  E-value=1.3e-29  Score=183.05  Aligned_cols=126  Identities=8%  Similarity=-0.033  Sum_probs=97.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    .... ...++.++|++|++.+++..+.          
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~----~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  100 (198)
T TIGR01189        26 GEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL----AEQR-DEPHRNILYLGHLPGLKPELSALENLHFWAAI  100 (198)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc----ccch-HHhhhheEEeccCcccccCCcHHHHHHHHHHH
Confidence            467899999999999999999999999999999999633    2222 2445679999998766532211          


Q ss_pred             ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .......+.++++.+++.   +..+  +|+||+|||+||||++.+|+++++|   ||++.+|....+.+
T Consensus       101 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~~l  166 (198)
T TIGR01189       101 HGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILD---EPTTALDKAGVALL  166 (198)
T ss_pred             cCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence            111123567778777663   3333  7999999999999999999999999   99999998877643

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.96  E-value=9.8e-30  Score=213.06  Aligned_cols=128  Identities=10%  Similarity=0.117  Sum_probs=103.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC---Ch
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL---DI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~---~~   73 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+|+.++||+|++.+|.-     ...   ..
T Consensus       500 G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~----~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~  575 (708)
T TIGR01193       500 NSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF----SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKEN  575 (708)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE----EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCC
Confidence            4689999999999999999999999999999999997    56667888899999999999998731     111   11


Q ss_pred             hhHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           74 QDKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        74 ~~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .+.+.+.++++..++       .         ....+|||||||++||||+..+|++|++|   |||+.+|..+.+++.
T Consensus       576 ~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLD---E~Ts~LD~~te~~i~  651 (708)
T TIGR01193       576 VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILD---ESTSNLDTITEKKIV  651 (708)
T ss_pred             CCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe---CccccCCHHHHHHHH
Confidence            223445555555432       1         22337999999999999999999999999   999999998877554

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.96  E-value=5.1e-30  Score=181.74  Aligned_cols=108  Identities=14%  Similarity=0.104  Sum_probs=89.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++.......+++.++|++|++.+++. +.  .      +
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~~~~~-tv--~------~   94 (173)
T cd03246          28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGA----DISQWDPNELGDHVGYLPQDDELFSG-SI--A------E   94 (173)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE----EcccCCHHHHHhheEEECCCCccccC-cH--H------H
Confidence            4578999999999999999999999999999999996    33334445567789999999876531 11  1      1


Q ss_pred             HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      -+          +||||+||++||||++.+|+++++|   ||++.+|...+..+
T Consensus        95 ~l----------LS~G~~qrv~la~al~~~p~~lllD---EPt~~LD~~~~~~l  135 (173)
T cd03246          95 NI----------LSGGQRQRLGLARALYGNPRILVLD---EPNSHLDVEGERAL  135 (173)
T ss_pred             HC----------cCHHHHHHHHHHHHHhcCCCEEEEE---CCccccCHHHHHHH
Confidence            11          8999999999999999999999999   99999999887743

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.96  E-value=2.1e-29  Score=185.57  Aligned_cols=127  Identities=11%  Similarity=0.047  Sum_probs=96.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH-HHHhhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR-KLTKELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+.. ..++.++|+||++.+++..+.         
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~  101 (230)
T TIGR03410        26 GEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGED----ITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLA  101 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE----CCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHH
Confidence            46799999999999999999999999999999999963    3323332 235679999999877642211         


Q ss_pred             --ChhhHHHHHHHHHHhh-h---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 --DIQDKESVAKLVKLID-K---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 --~~~~~~~~~~~l~~l~-~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .....+.+.++++.++ +   .+..+  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       102 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlD---EPt~~LD~~~~~~l  170 (230)
T TIGR03410       102 ALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLD---EPTEGIQPSIIKDI  170 (230)
T ss_pred             hcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCcccCCHHHHHHH
Confidence              1111233455666654 2   23444  7999999999999999999999999   99999999887744

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2e-29  Score=188.44  Aligned_cols=127  Identities=13%  Similarity=0.106  Sum_probs=99.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------C----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------L----   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------~----   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++|+||++.+++..+      .    
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~  103 (255)
T PRK11231         28 GKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK----PISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSP  103 (255)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCE----EhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccch
Confidence            4578999999999999999999999999999999996    3333344456677999999976542110      0    


Q ss_pred             --------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 --------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 --------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                              .....+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~~l  177 (255)
T PRK11231        104 WLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD---EPTTYLDINHQVEL  177 (255)
T ss_pred             hhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence                    112234567777777653   3333  7999999999999999999999999   99999999888754

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.96  E-value=1.2e-29  Score=207.77  Aligned_cols=128  Identities=15%  Similarity=0.151  Sum_probs=104.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCC---h
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLD---I   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~---~   73 (143)
                      +..++|+|+||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++|++|++.+|.-     ....   .
T Consensus       358 G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~----~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~  433 (571)
T TIGR02203       358 GETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH----DLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQ  433 (571)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE----eHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCC
Confidence            5689999999999999999999999999999999997    55667778889999999999998731     1111   2


Q ss_pred             hhHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           74 QDKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        74 ~~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .+.+.+.++++.+++.                .+..+|||||||++||||++.+|+++++|   ||++.+|..+.++++
T Consensus       434 ~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLD---Epts~LD~~~~~~i~  509 (571)
T TIGR02203       434 ADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILD---EATSALDNESERLVQ  509 (571)
T ss_pred             CCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHHH
Confidence            3345666667665431                12237999999999999999999999999   999999999988664

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=1.8e-29  Score=183.09  Aligned_cols=126  Identities=9%  Similarity=0.010  Sum_probs=98.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..+    .... ...++.++|++|++.+++..+.          
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~----~~~~-~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~  101 (204)
T PRK13538         27 GELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI----RRQR-DEYHQDLLYLGHQPGIKTELTALENLRFYQRL  101 (204)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc----ccch-HHhhhheEEeCCccccCcCCcHHHHHHHHHHh
Confidence            467899999999999999999999999999999999632    2221 3455679999998766532111          


Q ss_pred             -ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 -DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 -~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       .....+.+.++++.+++.   +..+  +||||+||+++|||++.+|+++++|   ||++.+|....+.+
T Consensus       102 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~l  168 (204)
T PRK13538        102 HGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD---EPFTAIDKQGVARL  168 (204)
T ss_pred             cCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHH
Confidence             112335667788887763   3333  7999999999999999999999999   99999999887744

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.96  E-value=1.5e-29  Score=184.55  Aligned_cols=125  Identities=15%  Similarity=0.179  Sum_probs=98.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    ....  ..++.++|++|++.+++..+.          
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~----~~~~--~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~   97 (213)
T TIGR01277        24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH----TGLA--PYQRPVSMLFQENNLFAHLTVRQNIGLGLHP   97 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEc----ccCC--hhccceEEEeccCccCCCCcHHHHHHhHhhc
Confidence            467899999999999999999999999999999999632    2221  245679999999876632110          


Q ss_pred             ----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          ..+....+.++++.+++.   +..+  +|+||+||++||||++.+|+++++|   ||++.+|...++.+
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~~LD~~~~~~~  167 (213)
T TIGR01277        98 GLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLD---EPFSALDPLLREEM  167 (213)
T ss_pred             cCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHHHHH
Confidence                112234567788887763   3333  7999999999999999999999999   99999999887744

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.2e-29  Score=191.10  Aligned_cols=127  Identities=17%  Similarity=0.109  Sum_probs=98.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++|.    ++.......+++.++|++|++. +++..+          
T Consensus        35 Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~  110 (269)
T PRK13648         35 GQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ----AITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLE  110 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE----ECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHH
Confidence            4678999999999999999999999999999999996    3333444566778999999974 331110          


Q ss_pred             ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         ... +..+.+.++++.+++.   +..+  +|+||+||++||||++.+|+++++|   ||++.+|...++.+
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---EPt~~LD~~~~~~l  181 (269)
T PRK13648        111 NHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD---EATSMLDPDARQNL  181 (269)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence               111 1234566777777653   3333  7999999999999999999999999   99999999887744

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.96  E-value=2.4e-29  Score=188.50  Aligned_cols=127  Identities=17%  Similarity=0.127  Sum_probs=98.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++.......+++.++|++|++.+++..+           
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~  103 (258)
T PRK13548         28 GEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGR----PLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP  103 (258)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE----EcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcc
Confidence            4578999999999999999999999999999999996    3333344455677999999976532111           


Q ss_pred             C---ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHh------hcCCcccccCCccccchhhhhhhhhc
Q 032336           71 L---DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAV------RNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ~---~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~------~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .   .......+.++++.+++.   +..+  +||||+|||+|||||+      .+|+++++|   ||++.+|...++.+
T Consensus       104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLD---EPt~~LD~~~~~~l  179 (258)
T PRK13548        104 HGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLD---EPTSALDLAHQHHV  179 (258)
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe---CCcccCCHHHHHHH
Confidence            0   012234567788887763   3343  7999999999999999      499999999   99999999887643

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.8e-29  Score=191.05  Aligned_cols=131  Identities=12%  Similarity=0.063  Sum_probs=97.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc--cccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY--SLVNFS----------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~--~l~~~~----------   69 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+...........+++.++|++|++  .++...          
T Consensus        33 Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~  112 (280)
T PRK13649         33 GSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQ  112 (280)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHH
Confidence            45789999999999999999999999999999999963321000122345667899999986  333210          


Q ss_pred             --cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 --TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 --~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .... +..+.+.++++.+++.    +..+  +||||||||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l  184 (280)
T PRK13649        113 NFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLD---EPTAGLDPKGRKEL  184 (280)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence              0111 1223466777777663    2332  7999999999999999999999999   99999999887744

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.8e-29  Score=188.05  Aligned_cols=127  Identities=13%  Similarity=0.075  Sum_probs=97.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------   70 (143)
                      +..++|+||||||||||+++|+|+++|     ++|+|.++|..    +...+...+++.++|+||++.+++..+      
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~----i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~  104 (250)
T PRK14247         29 NTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQD----IFKMDVIELRRRVQMVFQIPNPIPNLSIFENVA  104 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEE----CCcCCHHHHhccEEEEeccCccCCCCcHHHHHH
Confidence            457899999999999999999999974     69999999963    333344566778999999986542111      


Q ss_pred             ----C-----C-hhhHHHHHHHHHHhhhh-------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           71 ----L-----D-IQDKESVAKLVKLIDKS-------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        71 ----~-----~-~~~~~~~~~~l~~l~~~-------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                          .     . .+..+.+.++++.+++.       +..+  +||||+|||++|||++.+|+++++|   ||++.+|...
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD---EP~~~LD~~~  181 (250)
T PRK14247        105 LGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD---EPTANLDPEN  181 (250)
T ss_pred             HHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHH
Confidence                0     1 11234566777777652       2333  7999999999999999999999999   9999999988


Q ss_pred             hhhc
Q 032336          132 QEKY  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      ++++
T Consensus       182 ~~~l  185 (250)
T PRK14247        182 TAKI  185 (250)
T ss_pred             HHHH
Confidence            7744

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.96  E-value=1.9e-29  Score=187.79  Aligned_cols=128  Identities=13%  Similarity=0.071  Sum_probs=98.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccC-----CceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI-----GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------   70 (143)
                      +..++|+||||||||||+++|+|+++|+     +|+|.++|..+..  ........++.++|+||++.+++ .+      
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~  103 (247)
T TIGR00972        27 NQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD--KKIDVVELRRRVGMVFQKPNPFP-MSIYDNIA  103 (247)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccc--cccchHHHHhheEEEecCcccCC-CCHHHHHH
Confidence            4679999999999999999999999998     9999999973321  01223455678999999987653 11      


Q ss_pred             --------CC-hhhHHHHHHHHHHhhhh-------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           71 --------LD-IQDKESVAKLVKLIDKS-------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        71 --------~~-~~~~~~~~~~l~~l~~~-------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                              .. .+..+.+.++++.+++.       +..+  +||||+|||+||||++.+|+++++|   ||++.+|...+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EPt~~LD~~~~  180 (247)
T TIGR00972       104 YGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLD---EPTSALDPIAT  180 (247)
T ss_pred             hHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHH
Confidence                    01 12234566777777653       2333  7999999999999999999999999   99999999887


Q ss_pred             hhc
Q 032336          133 EKY  135 (143)
Q Consensus       133 ~~~  135 (143)
                      +.+
T Consensus       181 ~~l  183 (247)
T TIGR00972       181 GKI  183 (247)
T ss_pred             HHH
Confidence            644

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.8e-29  Score=191.47  Aligned_cols=130  Identities=14%  Similarity=0.046  Sum_probs=100.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--ccc--------c---
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVN--------F---   68 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~--------~---   68 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..+.  ........+++.++|+||++.  ++.        +   
T Consensus        32 Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~--~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~  109 (283)
T PRK13636         32 GEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPID--YSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAV  109 (283)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECC--CCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHH
Confidence            4679999999999999999999999999999999997331  112234556778999999873  221        0   


Q ss_pred             -ccCCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           69 -STLDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        69 -~~~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                       ..... +..+.+.++++.+++.   +...  +||||+||++|||||+.+|++|++|   ||++.+|...++.+.
T Consensus       110 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilD---EPt~gLD~~~~~~l~  181 (283)
T PRK13636        110 NLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLD---EPTAGLDPMGVSEIM  181 (283)
T ss_pred             HcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCCHHHHHHHH
Confidence             01111 2235677788888763   3333  7999999999999999999999999   999999998887543

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.96  E-value=2e-29  Score=187.74  Aligned_cols=131  Identities=15%  Similarity=0.166  Sum_probs=98.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcc-----ccHHHHHhhcchhccccccccccc------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHN-----SACRKLTKELCDVIEDYSLVNFST------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~-----~~~~~~~~~ig~V~Q~~~l~~~~~------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+.. ...     .....+++.++|++|++.+++..+      
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~  107 (250)
T PRK11264         29 GEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDT-ARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII  107 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccc-cccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHH
Confidence            45789999999999999999999999999999999974321 000     112445678999999987653211      


Q ss_pred             --------CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 --------LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 --------~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                              ... ...+.+.++++.+++.   +...  +||||+|||+||||++.+|+++++|   ||++.+|....+.+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l~  184 (250)
T PRK11264        108 EGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFD---EPTSALDPELVGEVL  184 (250)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHHH
Confidence                    011 1234566777777763   2333  7999999999999999999999999   999999998877443

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.96  E-value=1.5e-29  Score=185.14  Aligned_cols=126  Identities=17%  Similarity=0.145  Sum_probs=96.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC--------Ch
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL--------DI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~--------~~   73 (143)
                      +..++|+||||||||||+++|+|+.+|++|+|.++|..    +...+....++.++|++|++.+++. +.        ..
T Consensus        30 G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~~~q~~~~~~~-tv~e~l~~~~~~  104 (220)
T cd03245          30 GEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTD----IRQLDPADLRRNIGYVPQDVTLFYG-TLRDNITLGAPL  104 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEE----hHHCCHHHHHhhEEEeCCCCccccc-hHHHHhhcCCCC
Confidence            45789999999999999999999999999999999963    3333334456789999999876531 10        11


Q ss_pred             hhHHHHHHHHHHhhhh---CC-------------CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           74 QDKESVAKLVKLIDKS---NG-------------YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        74 ~~~~~~~~~l~~l~~~---~~-------------~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .....+.++++.+++.   +.             ..+||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       105 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~l  179 (220)
T cd03245         105 ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLD---EPTSAMDMNSEERL  179 (220)
T ss_pred             CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHH
Confidence            1223445566655432   11             247999999999999999999999999   99999999888744

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.7e-29  Score=190.78  Aligned_cols=127  Identities=14%  Similarity=0.046  Sum_probs=98.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc-HHHHHhhcchhcccccc-ccccc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA-CRKLTKELCDVIEDYSL-VNFST---------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~~~ig~V~Q~~~l-~~~~~---------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++|..    +.... ...+++.++|++|++.. +...+         
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~  103 (274)
T PRK13644         28 GEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID----TGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP  103 (274)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE----CCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhH
Confidence            46799999999999999999999999999999999963    32222 34566789999998752 21100         


Q ss_pred             ----CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ----LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ----~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          ... +..+.+.++++.+++.   +..+  +|+||+|||+||||++.+|+++|+|   ||++.+|...+..+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt~gLD~~~~~~l  175 (274)
T PRK13644        104 ENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD---EVTSMLDPDSGIAV  175 (274)
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence                111 2234567778887763   3333  7999999999999999999999999   99999999887644

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.96  E-value=1.7e-29  Score=207.46  Aligned_cols=128  Identities=12%  Similarity=0.116  Sum_probs=105.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+|+.++||+|++.+|..     ...  ...
T Consensus       366 G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~----~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~  441 (574)
T PRK11160        366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQ----PIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNA  441 (574)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----EhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCcc
Confidence            4679999999999999999999999999999999997    56667788899999999999988731     111  122


Q ss_pred             hHHHHHHHHHHhhhh---------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDKS---------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~---------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      +.+.+.++++.+++.               ....+||||+||++||||++.+|+++++|   ||++.+|..+.+.+.
T Consensus       442 ~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililD---E~ts~lD~~t~~~i~  515 (574)
T PRK11160        442 SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLD---EPTEGLDAETERQIL  515 (574)
T ss_pred             CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHH
Confidence            345667777776542               12337999999999999999999999999   999999999887554

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.96  E-value=1.6e-29  Score=205.66  Aligned_cols=128  Identities=15%  Similarity=0.140  Sum_probs=103.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++||+|++.+|..     ...  ...
T Consensus       348 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~----~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~  423 (529)
T TIGR02857       348 GERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGV----PLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDA  423 (529)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE----ehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCC
Confidence            4679999999999999999999999999999999997    56667778899999999999988731     111  111


Q ss_pred             hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ..+.+.++++.+++.                ....+|||||||+++|||++++|+++++|   ||++.+|..+.+++.
T Consensus       424 ~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililD---E~ts~lD~~~~~~i~  498 (529)
T TIGR02857       424 SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD---EPTAHLDAETEALVT  498 (529)
T ss_pred             CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEe---CcccccCHHHHHHHH
Confidence            234556666654421                12337999999999999999999999999   999999999988654

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.96  E-value=6.5e-30  Score=181.94  Aligned_cols=113  Identities=15%  Similarity=0.121  Sum_probs=89.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc--HHHHHhhcchhcccccccccccCChhhHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA--CRKLTKELCDVIEDYSLVNFSTLDIQDKESV   79 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~--~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~   79 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..    +...+  ....++.++|++|++.++...+.  .     
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~--~-----   94 (178)
T cd03229          26 GEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGED----LTDLEDELPPLRRRIGMVFQDFALFPHLTV--L-----   94 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE----ccccchhHHHHhhcEEEEecCCccCCCCCH--H-----
Confidence            46789999999999999999999999999999999963    32222  34566789999999876533221  1     


Q ss_pred             HHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           80 AKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        80 ~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                       +.+..   .    +|+||+||+++|||++.+|+++++|   ||++.+|...++.+.
T Consensus        95 -~~l~~---~----lS~G~~qr~~la~al~~~p~llilD---EP~~~LD~~~~~~l~  140 (178)
T cd03229          95 -ENIAL---G----LSGGQQQRVALARALAMDPDVLLLD---EPTSALDPITRREVR  140 (178)
T ss_pred             -Hheee---c----CCHHHHHHHHHHHHHHCCCCEEEEe---CCcccCCHHHHHHHH
Confidence             11110   0    8999999999999999999999999   999999999887543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.96  E-value=1.9e-29  Score=185.30  Aligned_cols=127  Identities=18%  Similarity=0.085  Sum_probs=94.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc---HHHHHhhcchhccccc--cccccc------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA---CRKLTKELCDVIEDYS--LVNFST------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---~~~~~~~ig~V~Q~~~--l~~~~~------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+   ...+++.++|++|++.  +++..+      
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~  106 (228)
T cd03257          31 GETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKD----LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIA  106 (228)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE----ccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHH
Confidence            46799999999999999999999999999999999963    32222   2345678999999973  221111      


Q ss_pred             -----C--Chh--hHHH-HHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           71 -----L--DIQ--DKES-VAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        71 -----~--~~~--~~~~-~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                           .  ...  .... +.++++.+++.    +..+  +||||+|||+||||++.+|+++|+|   ||++.+|...++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~  183 (228)
T cd03257         107 EPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIAD---EPTSALDVSVQAQ  183 (228)
T ss_pred             HHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEec---CCCCCCCHHHHHH
Confidence                 0  111  1111 23666776652    3333  7999999999999999999999999   9999999988774


Q ss_pred             c
Q 032336          135 Y  135 (143)
Q Consensus       135 ~  135 (143)
                      +
T Consensus       184 l  184 (228)
T cd03257         184 I  184 (228)
T ss_pred             H
Confidence            4

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.6e-29  Score=190.07  Aligned_cols=127  Identities=13%  Similarity=0.115  Sum_probs=98.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--ccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFS----------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~----------   69 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..    +...+...+++.++|++|++.  ++...          
T Consensus        30 Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~  105 (277)
T PRK13652         30 NSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP----ITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPI  105 (277)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE----CCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHH
Confidence            46789999999999999999999999999999999973    333344566778999999974  32100          


Q ss_pred             --cCCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 --TLDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 --~~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .... ...+.+.++++.+++.   +..+  +||||+||++|||||+.+|+++++|   ||++.+|...++.+
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilD---EPt~gLD~~~~~~l  176 (277)
T PRK13652        106 NLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLD---EPTAGLDPQGVKEL  176 (277)
T ss_pred             HcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence              0111 1224567778887763   3333  7999999999999999999999999   99999999887754

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2e-29  Score=190.11  Aligned_cols=127  Identities=13%  Similarity=0.113  Sum_probs=98.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+...+++.++|++|++. .+...+          
T Consensus        35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~----i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~  110 (271)
T PRK13632         35 GEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGIT----ISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLE  110 (271)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe----cCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHH
Confidence            45789999999999999999999999999999999963    333344556778999999973 221111          


Q ss_pred             ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         ... +....+.++++.+++.   +..+  +||||+||++|||||+.+|+++++|   ||++.+|...++.+
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---EP~~gLD~~~~~~l  181 (271)
T PRK13632        111 NKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFD---ESTSMLDPKGKREI  181 (271)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence               111 1233467778877763   3333  7999999999999999999999999   99999999887643

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.1e-29  Score=202.06  Aligned_cols=127  Identities=17%  Similarity=0.230  Sum_probs=104.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc--------cccCCh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN--------FSTLDI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~--------~~~~~~   73 (143)
                      ++++||+|+|||||||++|+|.+++. ++|+|+++|+    +++..+.+.+|+.||||||+..||.        +...+.
T Consensus       378 GekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~----dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sa  452 (591)
T KOG0057|consen  378 GEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQ----DIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSA  452 (591)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCe----eHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCc
Confidence            67899999999999999999999999 9999999997    6777888899999999999999983        122222


Q ss_pred             hhHHHHHHHHHHhhh-------hC---------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336           74 QDKESVAKLVKLIDK-------SN---------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK  137 (143)
Q Consensus        74 ~~~~~~~~~l~~l~~-------~~---------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~  137 (143)
                      .+ +.+.++.++.++       .+         +..+||||+|||++|||+..+|+++++|   |||+.+|.++...+++
T Consensus       453 s~-eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D---EaTS~LD~~TE~~i~~  528 (591)
T KOG0057|consen  453 SD-EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD---EATSALDSETEREILD  528 (591)
T ss_pred             CH-HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec---CcccccchhhHHHHHH
Confidence            22 345555555543       12         2237999999999999999999999999   9999999988775543

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.96  E-value=1.8e-29  Score=189.82  Aligned_cols=126  Identities=13%  Similarity=0.096  Sum_probs=96.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH---HHHHhhcchhccccc--cccccc------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC---RKLTKELCDVIEDYS--LVNFST------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~---~~~~~~ig~V~Q~~~--l~~~~~------   70 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..    +...+.   ..+++.++|++|++.  +++..+      
T Consensus        37 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~  112 (265)
T TIGR02769        37 GETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQD----LYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG  112 (265)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE----ccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHH
Confidence            46789999999999999999999999999999999963    322222   235667999999863  321110      


Q ss_pred             --------CCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           71 --------LDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        71 --------~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                              ... ...+.+.++++.+++.    +..+  +||||+|||+||||++.+|+++|+|   ||++.+|...++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLD---EPt~~LD~~~~~~  188 (265)
T TIGR02769       113 EPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLD---EAVSNLDMVLQAV  188 (265)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHH
Confidence                    111 2234677788887763    2333  7999999999999999999999999   9999999987663

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.2e-29  Score=205.60  Aligned_cols=124  Identities=19%  Similarity=0.201  Sum_probs=98.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c--CChh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T--LDIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~--~~~~   74 (143)
                      ++.+|||||||+||||+.++|.++|.|++|+|.+||.    ++.+.+.+.+|++||+|.|+|.||.-.     .  ....
T Consensus       494 Ge~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~----~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~  569 (716)
T KOG0058|consen  494 GEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV----PISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNA  569 (716)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe----ehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCC
Confidence            4689999999999999999999999999999999997    778888999999999999999998311     1  1122


Q ss_pred             hHHHHHHHHHHhh-------hhCC---------CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           75 DKESVAKLVKLID-------KSNG---------YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        75 ~~~~~~~~l~~l~-------~~~~---------~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                      ..+.+..+.+..+       +.++         .-+|||||||++|||||..+|.+|+||   |+|+-||.+..
T Consensus       570 t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILD---EATSALDaeSE  640 (716)
T KOG0058|consen  570 TDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILD---EATSALDAESE  640 (716)
T ss_pred             CHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEe---chhhhcchhhH
Confidence            2233444433322       1222         227999999999999999999999999   99999987643

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.4e-29  Score=186.46  Aligned_cols=127  Identities=13%  Similarity=0.071  Sum_probs=98.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH-HHHhhcchhccccccccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR-KLTKELCDVIEDYSLVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~V~Q~~~l~~~~~----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+.. ..++.++|++|++.+++..+          
T Consensus        29 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~  104 (241)
T PRK10895         29 GEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDED----ISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQ  104 (241)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE----CCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhh
Confidence            46789999999999999999999999999999999963    3333332 34567999999987653111          


Q ss_pred             C----C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 L----D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ~----~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .    . .+....+.++++.+++.   +...  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l  176 (241)
T PRK10895        105 IRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD---EPFAGVDPISVIDI  176 (241)
T ss_pred             cccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence            0    1 12234567778877653   3333  7999999999999999999999999   99999999887643

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.96  E-value=2.3e-29  Score=207.09  Aligned_cols=128  Identities=14%  Similarity=0.164  Sum_probs=102.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCC--hh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLD--IQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~--~~   74 (143)
                      +..++|+|+||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++||+|++.+|..     ....  ..
T Consensus       361 G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~----~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~  436 (588)
T PRK13657        361 GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT----DIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDA  436 (588)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE----EhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCC
Confidence            4679999999999999999999999999999999997    56677788899999999999998731     1111  11


Q ss_pred             hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      +.+.+.++++.+++.                +...+||||+||++||||++.+|+++++|   ||++.+|..+.+++.
T Consensus       437 ~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLD---Epts~LD~~t~~~i~  511 (588)
T PRK13657        437 TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD---EATSALDVETEAKVK  511 (588)
T ss_pred             CHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHHH
Confidence            233455555554321                22347999999999999999999999999   999999999888654

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.96  E-value=1.9e-29  Score=211.42  Aligned_cols=129  Identities=16%  Similarity=0.131  Sum_probs=104.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~   74 (143)
                      +..++|+||||||||||+++|.|+++|++|+|.++|.    ++...+...++++++||+|++.+|.-     ...  ...
T Consensus       507 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~----~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~  582 (711)
T TIGR00958       507 GEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGV----PLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDT  582 (711)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE----EHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCC
Confidence            4679999999999999999999999999999999997    56667788899999999999998731     111  112


Q ss_pred             hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336           75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK  137 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~  137 (143)
                      +.+.+.++++.+++.                .+..+|||||||++||||+.++|+++++|   ||++.+|.++.+++.+
T Consensus       583 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILD---EpTSaLD~~te~~i~~  658 (711)
T TIGR00958       583 PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILD---EATSALDAECEQLLQE  658 (711)
T ss_pred             CHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---ccccccCHHHHHHHHH
Confidence            234556666654321                12337999999999999999999999999   9999999988776654

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=2.2e-29  Score=182.20  Aligned_cols=126  Identities=14%  Similarity=0.075  Sum_probs=97.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD---------   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~---------   72 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|+++|..    +.. .....++.++|++|++.+++..++.         
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~----~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~  101 (200)
T PRK13540         27 GGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQS----IKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF  101 (200)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCc----ccc-CHHHHHhheEEeccccccCcCCCHHHHHHHHHhc
Confidence            46799999999999999999999999999999999963    322 2234567899999987765322110         


Q ss_pred             hhhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           73 IQDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 ~~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ......+.++++.+++.   +..  .+|+||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       102 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilD---EP~~~LD~~~~~~l  166 (200)
T PRK13540        102 SPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLD---EPLVALDELSLLTI  166 (200)
T ss_pred             CcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCcccCHHHHHHH
Confidence            01123567777777653   233  37999999999999999999999999   99999999887744

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.1e-29  Score=185.06  Aligned_cols=125  Identities=13%  Similarity=0.171  Sum_probs=97.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc----------C
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------L   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------~   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +.....  .++.++|+||++.+++..+          .
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~~~--~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~   98 (232)
T PRK10771         25 GERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD----HTTTPP--SRRPVSMLFQENNLFSHLTVAQNIGLGLNP   98 (232)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCee----cCcCCh--hhccEEEEecccccccCCcHHHHHhccccc
Confidence            46789999999999999999999999999999999963    222221  2457999999987653211          0


Q ss_pred             ----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          .....+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++++
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EP~~gLD~~~~~~~  168 (232)
T PRK10771         99 GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLD---EPFSALDPALRQEM  168 (232)
T ss_pred             ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence                112344577788888763   3443  7999999999999999999999999   99999999887644

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.9e-29  Score=186.14  Aligned_cols=131  Identities=15%  Similarity=0.170  Sum_probs=98.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehh--hhccccHHHHHhhcchhcccccccccccC--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQ--AVHNSACRKLTKELCDVIEDYSLVNFSTL--------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~--------   71 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..+..  ..........++.++|++|++.+++..+.        
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~  107 (242)
T PRK11124         28 GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAP  107 (242)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHH
Confidence            46789999999999999999999999999999999963210  00111234556789999999876632111        


Q ss_pred             ------C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ------D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ------~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                            . .+....+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++..
T Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilD---EPt~~LD~~~~~~l  180 (242)
T PRK11124        108 CRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFD---EPTAALDPEITAQI  180 (242)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCcCCHHHHHHH
Confidence                  1 11233466677777663   3333  7999999999999999999999999   99999999887643

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.96  E-value=2.8e-29  Score=188.99  Aligned_cols=127  Identities=13%  Similarity=0.123  Sum_probs=97.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--ccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFS----------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~----------   69 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +........++.++|+||++.  +++..          
T Consensus        39 Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~  114 (267)
T PRK15112         39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHP----LHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPL  114 (267)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEE----CCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHH
Confidence            46789999999999999999999999999999999963    222233344567999999864  22110          


Q ss_pred             ----cCCh-hhHHHHHHHHHHhhhh----CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 ----TLDI-QDKESVAKLVKLIDKS----NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 ----~~~~-~~~~~~~~~l~~l~~~----~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          .... +..+.+.++++.+++.    +..  .+|+||+|||+||||++.+|+++|||   ||++.+|....+.+
T Consensus       115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~l  188 (267)
T PRK15112        115 RLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIAD---EALASLDMSMRSQL  188 (267)
T ss_pred             HhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEc---CCcccCCHHHHHHH
Confidence                0111 2234567788888762    333  37999999999999999999999999   99999999887644

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.96  E-value=3.7e-29  Score=183.21  Aligned_cols=127  Identities=12%  Similarity=0.086  Sum_probs=96.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c-CChhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T-LDIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~-~~~~~   75 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++.......+++.++|++|++.+++..     . .....
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~  105 (221)
T cd03244          30 GEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGV----DISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYS  105 (221)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCE----EhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCC
Confidence            4578999999999999999999999999999999996    333344556678899999998765311     0 01111


Q ss_pred             HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ...+.++++.+++.                ....+|+||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       106 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD---EP~~~LD~~~~~~l  178 (221)
T cd03244         106 DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLD---EATASVDPETDALI  178 (221)
T ss_pred             HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHH
Confidence            23344555554331                12237999999999999999999999999   99999999887743

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.9e-29  Score=184.46  Aligned_cols=127  Identities=12%  Similarity=0.039  Sum_probs=96.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH-HHHhhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR-KLTKELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..    +...+.. ..++.++|++|++.+++..++         
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~  106 (237)
T PRK11614         31 GEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKD----ITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGF  106 (237)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEe----cCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhh
Confidence            46799999999999999999999999999999999963    3333333 345679999999876632110         


Q ss_pred             --C-hhhHHHHHHHHHHhh-h---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 --D-IQDKESVAKLVKLID-K---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 --~-~~~~~~~~~~l~~l~-~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        . .+..+.+.++++.++ +   .+...  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       107 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlD---EPt~~LD~~~~~~l  176 (237)
T PRK11614        107 FAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD---EPSLGLAPIIIQQI  176 (237)
T ss_pred             ccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEc---CccccCCHHHHHHH
Confidence              1 111234555566652 3   23333  7999999999999999999999999   99999999887643

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.96  E-value=2.4e-29  Score=185.11  Aligned_cols=127  Identities=17%  Similarity=0.135  Sum_probs=94.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c-C-Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T-L-DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~-~-~~~   74 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.++|..    +...+...+++.++|++|++.++...     . . ...
T Consensus        29 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~  104 (229)
T cd03254          29 GETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGID----IRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNA  104 (229)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEe----HHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCC
Confidence            45789999999999999999999999999999999963    33334455677899999998765310     0 0 011


Q ss_pred             hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ....+.++++.+++.                ....+|+||+|||+|||||+.+|+++++|   ||++.+|....+.+
T Consensus       105 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllD---EP~~~LD~~~~~~l  178 (229)
T cd03254         105 TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILD---EATSNIDTETEKLI  178 (229)
T ss_pred             CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHH
Confidence            112333333333210                11337999999999999999999999999   99999999887743

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.3e-29  Score=185.82  Aligned_cols=127  Identities=13%  Similarity=0.052  Sum_probs=98.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc---cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS---LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS---------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~---------   69 (143)
                      +..++|+||||||||||+++|+|+++   |++|+|.++|..    +........++.++|+||++.+|+..         
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~----i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~  103 (246)
T PRK14269         28 NKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD----VKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAP  103 (246)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEe----cccCCHHHHhhhEEEEecCCccccccHHHHhhhHH
Confidence            46799999999999999999999974   689999999973    33333445667899999998776310         


Q ss_pred             cC-----C-hhhHHHHHHHHHHhhhh-------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           70 TL-----D-IQDKESVAKLVKLIDKS-------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        70 ~~-----~-~~~~~~~~~~l~~l~~~-------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      ..     . ....+.+.++++.+++.       +...  +|+||+|||++|||++.+|+++++|   ||++.+|...+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EP~~~LD~~~~~~  180 (246)
T PRK14269        104 KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLD---EPTSALDPISSGV  180 (246)
T ss_pred             hhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHH
Confidence            00     0 12233566777877762       2332  7999999999999999999999999   9999999987764


Q ss_pred             c
Q 032336          135 Y  135 (143)
Q Consensus       135 ~  135 (143)
                      +
T Consensus       181 l  181 (246)
T PRK14269        181 I  181 (246)
T ss_pred             H
Confidence            3

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.4e-29  Score=180.32  Aligned_cols=128  Identities=16%  Similarity=0.263  Sum_probs=108.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc--------------c
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV--------------N   67 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~--------------~   67 (143)
                      +-.++|||||||||||||.+++++++.++|+|+++|.    ++..++.++++++++.+-|+..+.              |
T Consensus        27 g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~----~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfP  102 (252)
T COG4604          27 GGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGL----ELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFP  102 (252)
T ss_pred             CceeEEECCCCccHHHHHHHHHHhccccCceEEEeee----ecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCc
Confidence            3468999999999999999999999999999999997    667788899999999999986532              2


Q ss_pred             c--ccCChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           68 F--STLDIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        68 ~--~~~~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      +  .....++...+.++++.+++   .++|.  +||||+||.-||+.+||+.+..|||   ||+-+||-.-...+|
T Consensus       103 YSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLD---EPLNNLDmkHsv~iM  175 (252)
T COG4604         103 YSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLD---EPLNNLDMKHSVQIM  175 (252)
T ss_pred             ccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEec---CcccccchHHHHHHH
Confidence            2  22456888899999998865   57777  7999999999999999999999999   999999876554443

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.5e-29  Score=193.60  Aligned_cols=128  Identities=9%  Similarity=0.032  Sum_probs=97.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc----cCCceEEEcceeehhhhccccHHH---H-Hhhcchhcccccc--ccccc-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS----LIGSNICCSNVFYLQAVHNSACRK---L-TKELCDVIEDYSL--VNFST-   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~----~~~G~i~~~g~~~~~~~~~~~~~~---~-~~~ig~V~Q~~~l--~~~~~-   70 (143)
                      ++.++|+|+||||||||+++|+|+++    |++|+|.++|..    +.....+.   . ++.++||||++..  .+..+ 
T Consensus        33 Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~----i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv  108 (330)
T PRK15093         33 GEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID----LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERV  108 (330)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE----CCcCCHHHHHHHhCCCEEEEecCcchhcCccccH
Confidence            46799999999999999999999986    589999999973    33333322   2 3469999999752  22111 


Q ss_pred             ------------C------C-hhhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccc
Q 032336           71 ------------L------D-IQDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFH  123 (143)
Q Consensus        71 ------------~------~-~~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~  123 (143)
                                  .      . .+..+.+.++++.+++.      +.++  +||||+|||+|||||+.+|+++++|   ||
T Consensus       109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilD---EP  185 (330)
T PRK15093        109 GRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIAD---EP  185 (330)
T ss_pred             HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEe---CC
Confidence                        0      0 12234677888888774      3444  7999999999999999999999999   99


Q ss_pred             cchhhhhhhhhcc
Q 032336          124 LFQSLAEVQEKYI  136 (143)
Q Consensus       124 ~~~~~~~~~~~~~  136 (143)
                      ++.||..++..+.
T Consensus       186 ts~LD~~~~~~i~  198 (330)
T PRK15093        186 TNAMEPTTQAQIF  198 (330)
T ss_pred             CCcCCHHHHHHHH
Confidence            9999998887544

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.96  E-value=4e-29  Score=183.16  Aligned_cols=130  Identities=14%  Similarity=0.138  Sum_probs=99.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++|..+. ..........++.++|++|++.++...+.          
T Consensus        31 G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~  109 (220)
T TIGR02982        31 GEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELY-GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALEL  109 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhH-hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHh
Confidence            4579999999999999999999999999999999997332 11111122456789999999876632110          


Q ss_pred             ----Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ----DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ----~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          .. +....+.++++.+++.   +..+  +|+||+||+++|||++.+|+++++|   ||++.+|...++.+
T Consensus       110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlD---EP~~~LD~~~~~~l  180 (220)
T TIGR02982       110 QPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLAD---EPTAALDSKSGRDV  180 (220)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCcCCHHHHHHH
Confidence                11 1234567778887763   3333  7999999999999999999999999   99999999887643

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.96  E-value=1.6e-29  Score=178.87  Aligned_cols=108  Identities=18%  Similarity=0.172  Sum_probs=88.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +.......+++.++|+||++.++.. +  ..     ++
T Consensus        28 G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~~~~~~~~~~~-t--~~-----e~   95 (171)
T cd03228          28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVD----LRDLDLESLRKNIAYVPQDPFLFSG-T--IR-----EN   95 (171)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEE----hhhcCHHHHHhhEEEEcCCchhccc-h--HH-----HH
Confidence            45789999999999999999999999999999999963    3333445566789999999865421 1  11     11


Q ss_pred             HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       +          +|+||+|||++|||++.+|+++++|   ||++.+|...++.+
T Consensus        96 -l----------LS~G~~~rl~la~al~~~p~llllD---EP~~gLD~~~~~~l  135 (171)
T cd03228          96 -I----------LSGGQRQRIAIARALLRDPPILILD---EATSALDPETEALI  135 (171)
T ss_pred             -h----------hCHHHHHHHHHHHHHhcCCCEEEEE---CCCcCCCHHHHHHH
Confidence             1          8999999999999999999999999   99999999887644

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.96  E-value=4.5e-29  Score=181.29  Aligned_cols=123  Identities=14%  Similarity=0.085  Sum_probs=94.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-------Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-------DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-------~~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +........++.++|++|++.+++. +.       ...
T Consensus        34 G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~~~  108 (207)
T cd03369          34 GEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGID----ISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFDEY  108 (207)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE----hHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccCCC
Confidence            45789999999999999999999999999999999973    3333445567789999999876531 11       111


Q ss_pred             hHHHHHHHHHHhhhh-CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           75 DKESVAKLVKLIDKS-NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~-~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ..+.+.++++   +. ....+|+||+|||++|||++.+|+++++|   ||++.+|....+.+
T Consensus       109 ~~~~~~~~l~---~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~~l  164 (207)
T cd03369         109 SDEEIYGALR---VSEGGLNLSQGQRQLLCLARALLKRPRVLVLD---EATASIDYATDALI  164 (207)
T ss_pred             CHHHHHHHhh---ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe---CCcccCCHHHHHHH
Confidence            1222333333   22 23347999999999999999999999999   99999999887643

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.96  E-value=3.8e-29  Score=178.32  Aligned_cols=107  Identities=13%  Similarity=0.106  Sum_probs=88.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++.......+++.++|++|                    
T Consensus        25 G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~----~~~~~~~~~~~~~i~~~~q--------------------   80 (180)
T cd03214          25 GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK----DLASLSPKELARKIAYVPQ--------------------   80 (180)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE----ECCcCCHHHHHHHHhHHHH--------------------
Confidence            4678999999999999999999999999999999996    3333444556677999998                    


Q ss_pred             HHHHhhhh---C--CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           82 LVKLIDKS---N--GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        82 ~l~~l~~~---~--~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +++.+++.   +  ...+|+||+||+++|||++.+|+++++|   ||++.+|....+.+
T Consensus        81 ~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EP~~~LD~~~~~~~  136 (180)
T cd03214          81 ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLD---EPTSHLDIAHQIEL  136 (180)
T ss_pred             HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHH
Confidence            33333331   2  2337999999999999999999999999   99999998887754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.8e-29  Score=186.10  Aligned_cols=129  Identities=12%  Similarity=0.062  Sum_probs=96.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+++     |++|+|.++|..+..  .......+++.++|++|++.+++..       
T Consensus        32 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~  109 (253)
T PRK14242         32 NQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD--PHVDVVELRRRVGMVFQKPNPFPKSIFENVAY  109 (253)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc--cccCHHHHhhcEEEEecCCCCCcCcHHHHHHH
Confidence            45789999999999999999999964     589999999973321  1123345667899999998765310       


Q ss_pred             -----cC-C-hhhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 -----TL-D-IQDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 -----~~-~-~~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                           .. . ....+.+.++++.+++.       +..  .+||||+|||+||||++.+|+++++|   ||++.+|...++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllD---EPt~~LD~~~~~  186 (253)
T PRK14242        110 GLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMD---EPASALDPIATQ  186 (253)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHH
Confidence                 00 1 11234566677776641       222  37999999999999999999999999   999999998877


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       187 ~l  188 (253)
T PRK14242        187 KI  188 (253)
T ss_pred             HH
Confidence            44

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.96  E-value=3.3e-29  Score=185.26  Aligned_cols=127  Identities=15%  Similarity=0.107  Sum_probs=92.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++|+||++.++...     ..  ...
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~  103 (237)
T cd03252          28 GEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGH----DLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGM  103 (237)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCe----ehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCCC
Confidence            4578999999999999999999999999999999996    333334455677899999998765210     00  000


Q ss_pred             hHHHHHHH---------HHHh--hh---hC--CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           75 DKESVAKL---------VKLI--DK---SN--GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        75 ~~~~~~~~---------l~~l--~~---~~--~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ....+.+.         ++.+  ++   .+  ...+||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EP~~~LD~~~~~~l  177 (237)
T cd03252         104 SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD---EATSALDYESEHAI  177 (237)
T ss_pred             CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEe---CCcccCCHHHHHHH
Confidence            11122222         2222  11   11  2337999999999999999999999999   99999999887743

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.96  E-value=4.9e-29  Score=186.03  Aligned_cols=130  Identities=13%  Similarity=0.157  Sum_probs=98.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhc----------cccHHHHHhhcchhccccccccccc-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVH----------NSACRKLTKELCDVIEDYSLVNFST-   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~----------~~~~~~~~~~ig~V~Q~~~l~~~~~-   70 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..+. ...          ......+++.++|++|++.+++..+ 
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~-~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv  104 (252)
T TIGR03005        26 GEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY-HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTV  104 (252)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc-ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcH
Confidence            4679999999999999999999999999999999996332 110          1112345678999999987663211 


Q ss_pred             -------------CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           71 -------------LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        71 -------------~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                                   ... +..+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...
T Consensus       105 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~  181 (252)
T TIGR03005       105 LDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD---EVTSALDPEL  181 (252)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHH
Confidence                         111 1234567778877763   3333  7999999999999999999999999   9999999987


Q ss_pred             hhhc
Q 032336          132 QEKY  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      ++.+
T Consensus       182 ~~~l  185 (252)
T TIGR03005       182 VGEV  185 (252)
T ss_pred             HHHH
Confidence            7644

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.3e-29  Score=200.21  Aligned_cols=128  Identities=15%  Similarity=0.113  Sum_probs=105.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~   74 (143)
                      +..++|+|+||||||||+++|+|+++|++|+|.+||.    ++.+.+...++++++||+|+|.+|+-     ...  ...
T Consensus       347 g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~----~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~  422 (559)
T COG4988         347 GQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGI----DLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDA  422 (559)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCc----cccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcC
Confidence            4579999999999999999999999999999999997    66777888999999999999998841     111  112


Q ss_pred             hHHHHHHHHHHhhhh---------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDKS---------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~---------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .++.+.+++++.++.               .+.-+||||+|||++|||+..+++++++|   |||+.+|.++.+.++
T Consensus       423 s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD---EpTA~LD~etE~~i~  496 (559)
T COG4988         423 SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD---EPTAHLDAETEQIIL  496 (559)
T ss_pred             CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec---CCccCCCHhHHHHHH
Confidence            345677777776542               12226999999999999999999999999   999999998877543

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.9e-29  Score=189.54  Aligned_cols=127  Identities=13%  Similarity=0.052  Sum_probs=98.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCC---ceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG---SNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~-------   70 (143)
                      +..++|+||||||||||+++|+|+++|++   |+|.++|.    ++........++.++|+||++. ++...+       
T Consensus        33 Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~----~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~  108 (282)
T PRK13640         33 GSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGI----TLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF  108 (282)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCE----ECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHh
Confidence            46799999999999999999999999987   89999997    3333344456678999999974 221111       


Q ss_pred             ------CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ------LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ------~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                            ... +..+.+.++++.+++.   +..+  +|+||+|||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllD---EPt~gLD~~~~~~l  182 (282)
T PRK13640        109 GLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILD---ESTSMLDPAGKEQI  182 (282)
T ss_pred             hHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHHH
Confidence                  111 1224567778887763   3333  7999999999999999999999999   99999999888754

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.96  E-value=3.4e-29  Score=209.42  Aligned_cols=128  Identities=17%  Similarity=0.159  Sum_probs=103.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCC--hh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLD--IQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~--~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+|+.++||+|++.+|.-     ....  ..
T Consensus       491 G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~----~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~  566 (694)
T TIGR03375       491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV----DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYA  566 (694)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCC
Confidence            4689999999999999999999999999999999997    56677788899999999999998731     1111  12


Q ss_pred             hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      +.+.+.++++.+++       .         .+..+|||||||++||||+..+|+++++|   |||+.+|..+.+++.
T Consensus       567 ~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLD---E~Ts~LD~~te~~i~  641 (694)
T TIGR03375       567 DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLD---EPTSAMDNRSEERFK  641 (694)
T ss_pred             CHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHHH
Confidence            23455566655432       1         12337999999999999999999999999   999999998887654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.96  E-value=3.8e-29  Score=193.34  Aligned_cols=128  Identities=15%  Similarity=0.132  Sum_probs=98.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcceeehhhhccccHH---HHH-hhcchhccccc--cccccc--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSNVFYLQAVHNSACR---KLT-KELCDVIEDYS--LVNFST--   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~~---~~~-~~ig~V~Q~~~--l~~~~~--   70 (143)
                      ++.++|+|+||||||||+++|+|+++|+   +|+|.++|..    +...+.+   .++ +.|+||||++.  +++..+  
T Consensus        42 Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~----i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~  117 (330)
T PRK09473         42 GETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE----ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVG  117 (330)
T ss_pred             CCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE----CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHH
Confidence            4679999999999999999999999986   9999999974    3333333   233 47999999973  332111  


Q ss_pred             ------------CCh-hhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhh
Q 032336           71 ------------LDI-QDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLA  129 (143)
Q Consensus        71 ------------~~~-~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~  129 (143)
                                  ... +..+.+.++++.+++.      +.++  +||||+|||+|||||+.+|+++++|   ||++.||.
T Consensus       118 ~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilD---EPts~LD~  194 (330)
T PRK09473        118 EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIAD---EPTTALDV  194 (330)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCccCCH
Confidence                        111 2235667778887663      2343  7999999999999999999999999   99999999


Q ss_pred             hhhhhcc
Q 032336          130 EVQEKYI  136 (143)
Q Consensus       130 ~~~~~~~  136 (143)
                      .++..++
T Consensus       195 ~~~~~i~  201 (330)
T PRK09473        195 TVQAQIM  201 (330)
T ss_pred             HHHHHHH
Confidence            9987543

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.96  E-value=7.6e-29  Score=185.44  Aligned_cols=127  Identities=16%  Similarity=0.093  Sum_probs=98.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++|++|++.++...+           
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~  102 (256)
T TIGR03873        27 GSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGV----DLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIP  102 (256)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCE----EcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchh
Confidence            4678999999999999999999999999999999996    3333444556667999999975431100           


Q ss_pred             C-------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 L-------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ~-------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .       ..+..+.+.++++.+++.   +..+  +|+||+|||+||||++.+|+++++|   ||++.+|....+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~l  176 (256)
T TIGR03873       103 HRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLD---EPTNHLDVRAQLET  176 (256)
T ss_pred             hhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CccccCCHHHHHHH
Confidence            0       012234567778877653   3333  7999999999999999999999999   99999999877644

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.96  E-value=4e-29  Score=204.92  Aligned_cols=129  Identities=17%  Similarity=0.176  Sum_probs=103.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCCh--h
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLDI--Q   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~~--~   74 (143)
                      +..+||+||||||||||+++|.|+++|++|+|.++|.    ++...+...+|++|++|+|++.+|.-     ..+..  .
T Consensus       355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~----dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~a  430 (567)
T COG1132         355 GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGI----DIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDA  430 (567)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCE----ehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCC
Confidence            5689999999999999999999999999999999997    67778889999999999999998841     11111  1


Q ss_pred             hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336           75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK  137 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~  137 (143)
                      ..+.+.++++..+.       .         .+..+|||||||++||||+..+|++|+||   |||+.+|..+...+.+
T Consensus       431 t~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILD---EaTSalD~~tE~~I~~  506 (567)
T COG1132         431 TDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILD---EATSALDTETEALIQD  506 (567)
T ss_pred             CHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe---ccccccCHHhHHHHHH
Confidence            22445555554421       1         12337999999999999999999999999   9999999988775543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.96  E-value=3.2e-29  Score=170.73  Aligned_cols=117  Identities=15%  Similarity=0.185  Sum_probs=94.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCCh-hhHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDI-QDKESVA   80 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~-~~~~~~~   80 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++........++.++|++|++.++...++.. ...+.++
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~   86 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGK----DISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIE   86 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTE----EGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHH
T ss_pred             CCEEEEEccCCCccccceeeecccccccccccccccc----ccccccccccccccccccccccccccccccccccccccc
Confidence            4578999999999999999999999999999999997    4444556678889999999977765443222 3345677


Q ss_pred             HHHHHhhhh---CC------CcCCchhHHHHHHHHHHhhcCCcccccCCccccc
Q 032336           81 KLVKLIDKS---NG------YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLF  125 (143)
Q Consensus        81 ~~l~~l~~~---~~------~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~  125 (143)
                      ++++.+++.   ..      ..+|+||||||+||+|++.+|+++++|   ||++
T Consensus        87 ~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllD---EPt~  137 (137)
T PF00005_consen   87 EVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLD---EPTN  137 (137)
T ss_dssp             HHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEE---STTT
T ss_pred             ccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEe---CCCC
Confidence            888887652   12      337999999999999999999999999   8874

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=5.4e-29  Score=185.81  Aligned_cols=129  Identities=14%  Similarity=0.065  Sum_probs=96.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-----   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-----   71 (143)
                      +..++|+||||||||||+++|+|+++|     ++|+|.++|..+..  .......+++.++|++|++.+++..++     
T Consensus        30 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~  107 (253)
T PRK14267         30 NGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS--PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVA  107 (253)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc--cccChHHHhhceeEEecCCccCCCCcHHHHHH
Confidence            457899999999999999999999987     49999999973320  012334566789999999876532110     


Q ss_pred             ----------C-hhhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           72 ----------D-IQDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        72 ----------~-~~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                                . .+..+.+.++++.+++       .+...  +||||+|||+||||++.+|+++++|   ||++.+|...
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~  184 (253)
T PRK14267        108 IGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMD---EPTANIDPVG  184 (253)
T ss_pred             HHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHH
Confidence                      0 1112345667777664       12233  7999999999999999999999999   9999999988


Q ss_pred             hhhc
Q 032336          132 QEKY  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      ++.+
T Consensus       185 ~~~l  188 (253)
T PRK14267        185 TAKI  188 (253)
T ss_pred             HHHH
Confidence            7744

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.8e-29  Score=188.88  Aligned_cols=127  Identities=13%  Similarity=0.089  Sum_probs=98.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccc-cHHHHHhhcchhccccc--cccc--------c-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNS-ACRKLTKELCDVIEDYS--LVNF--------S-   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~~~~~ig~V~Q~~~--l~~~--------~-   69 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +... ....+++.++|+||++.  ++..        . 
T Consensus        36 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~----i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~  111 (280)
T PRK13633         36 GEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD----TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGP  111 (280)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe----ccccccHHHHhhheEEEecChhhhhccccHHHHHHhhH
Confidence            45799999999999999999999999999999999963    2222 23456778999999874  2210        0 


Q ss_pred             ---cCCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 ---TLDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 ---~~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         .... +..+.+.++++.+++.   +..+  +||||+|||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~gLD~~~~~~l  183 (280)
T PRK13633        112 ENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFD---EPTAMLDPSGRREV  183 (280)
T ss_pred             hhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence               0111 2234577788887763   3333  7999999999999999999999999   99999999988754

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.96  E-value=3.3e-29  Score=204.74  Aligned_cols=127  Identities=13%  Similarity=0.077  Sum_probs=104.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc---CChhhHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST---LDIQDKES   78 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~---~~~~~~~~   78 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++||+|++.+|....   ....+.+.
T Consensus       349 G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~  424 (547)
T PRK10522        349 GELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK----PVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPAL  424 (547)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE----ECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHH
Confidence            4689999999999999999999999999999999997    4556677788899999999998874211   11223445


Q ss_pred             HHHHHHHhhhh------C----CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           79 VAKLVKLIDKS------N----GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        79 ~~~~l~~l~~~------~----~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +.++++.+++.      .    +..+|||||||++||||++.+|+++++|   ||++.+|..+.+++
T Consensus       425 ~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililD---E~ts~LD~~~~~~i  488 (547)
T PRK10522        425 VEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLD---EWAADQDPHFRREF  488 (547)
T ss_pred             HHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCCCHHHHHHH
Confidence            67777776542      1    2358999999999999999999999999   99999999887754

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.2e-29  Score=186.96  Aligned_cols=122  Identities=20%  Similarity=0.208  Sum_probs=95.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    ...     ...++|++|++.+++..+           
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~-----~~~~~~v~q~~~~~~~~tv~e~l~~~~~~   97 (255)
T PRK11248         27 GELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV----EGP-----GAERGVVFQNEGLLPWRNVQDNVAFGLQL   97 (255)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC----CCC-----CCcEEEEeCCCccCCCCcHHHHHHhHHHH
Confidence            467999999999999999999999999999999999632    211     134899999977653211           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .. .+..+.+.++++.+++.   +..+  +||||+|||++||||+.+|+++++|   ||++.+|...++.+
T Consensus        98 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD---EPt~~LD~~~~~~l  167 (255)
T PRK11248         98 AGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD---EPFGALDAFTREQM  167 (255)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHH
Confidence              11 11234567788887763   3333  7999999999999999999999999   99999999887744

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.96  E-value=2.9e-29  Score=193.65  Aligned_cols=120  Identities=18%  Similarity=0.180  Sum_probs=94.6

Q ss_pred             EECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-------------Ch
Q 032336            7 VIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-------------DI   73 (143)
Q Consensus         7 liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-------------~~   73 (143)
                      |+||||||||||+++|+|+++|++|+|.++|..+    .....  .++.++|+||++.+|+..++             ..
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i----~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~   74 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV----TNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPR   74 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEEC----CCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCH
Confidence            6899999999999999999999999999999733    22222  35679999999887643221             11


Q ss_pred             -hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           74 -QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        74 -~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       +..+.+.++++.+++.   +..+  +||||||||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus        75 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLD---EP~s~LD~~~~~~l  139 (325)
T TIGR01187        75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLD---EPLSALDKKLRDQM  139 (325)
T ss_pred             HHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCCccCCHHHHHHH
Confidence             1234567778887763   4443  7999999999999999999999999   99999999887744

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.6e-29  Score=186.82  Aligned_cols=129  Identities=11%  Similarity=0.011  Sum_probs=96.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+++     |++|+|.++|..+..  .......+++.++|+||++.+++..       
T Consensus        39 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~  116 (269)
T PRK14259         39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD--PRVDPVEVRRRIGMVFQQPNPFPKSIYENIAF  116 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc--ccCCHHHHhhceEEEccCCccchhhHHHHHhh
Confidence            45789999999999999999999987     689999999963310  0123445667899999998765310       


Q ss_pred             -----cCChhhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 -----TLDIQDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 -----~~~~~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                           ....+..+.+.++++.+++       .+...  +|+||||||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---EPt~gLD~~~~~~l  193 (269)
T PRK14259        117 GARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMD---EPCSALDPISTLKI  193 (269)
T ss_pred             hhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHHHHH
Confidence                 0111123445566766653       23333  7999999999999999999999999   99999999887744

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=3.7e-29  Score=178.61  Aligned_cols=114  Identities=13%  Similarity=0.060  Sum_probs=87.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc-HHHHHhhcchhccccc---ccccccCChhhHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA-CRKLTKELCDVIEDYS---LVNFSTLDIQDKE   77 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~~~ig~V~Q~~~---l~~~~~~~~~~~~   77 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +.... ....++.++|++|++.   +++..+  ..+  
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t--~~e--   97 (182)
T cd03215          26 GEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKP----VTRRSPRDAIRAGIAYVPEDRKREGLVLDLS--VAE--   97 (182)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE----CCccCHHHHHhCCeEEecCCcccCcccCCCc--HHH--
Confidence            45789999999999999999999999999999999963    33333 2345667999999853   332221  111  


Q ss_pred             HHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           78 SVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        78 ~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          .+....     .+|+||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus        98 ----~l~~~~-----~LS~G~~qrl~la~al~~~p~llllD---EP~~~LD~~~~~~l  143 (182)
T cd03215          98 ----NIALSS-----LLSGGNQQKVVLARWLARDPRVLILD---EPTRGVDVGAKAEI  143 (182)
T ss_pred             ----HHHHHh-----hcCHHHHHHHHHHHHHccCCCEEEEC---CCCcCCCHHHHHHH
Confidence                111100     08999999999999999999999999   99999999887754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.96  E-value=5.3e-29  Score=183.66  Aligned_cols=125  Identities=12%  Similarity=0.070  Sum_probs=94.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc----CCceEEEcceeehhhhccccHHHHHhhcchhccccc-cc-cccc-----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LV-NFST-----   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~-~~~~-----   70 (143)
                      +..++|+||||||||||+++|+|+++|    ++|+|.++|..+    ...  ...++.++|++|++. .+ +..+     
T Consensus        12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~----~~~--~~~~~~i~~~~q~~~~~~~~~~t~~~~~   85 (230)
T TIGR02770        12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL----LPL--SIRGRHIATIMQNPRTAFNPLFTMGNHA   85 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEec----hhh--hhhhheeEEEecCchhhcCcccCHHHHH
Confidence            457899999999999999999999999    899999999632    221  222357999999974 22 1110     


Q ss_pred             ---------CChhhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           71 ---------LDIQDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        71 ---------~~~~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                               ......+.+.++++.+++.      +..+  +||||+|||+||||++.+|+++++|   ||++.+|....+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD---EPt~~LD~~~~~  162 (230)
T TIGR02770        86 IETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD---EPTTDLDVVNQA  162 (230)
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc---CCccccCHHHHH
Confidence                     0112234567778877663      2233  7999999999999999999999999   999999998876


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       163 ~l  164 (230)
T TIGR02770       163 RV  164 (230)
T ss_pred             HH
Confidence            43

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.96  E-value=7.5e-29  Score=182.96  Aligned_cols=122  Identities=16%  Similarity=0.094  Sum_probs=94.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    .....     ..+|++|++.+++..+           
T Consensus        11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~-----~~~~v~q~~~l~~~~tv~e~l~~~~~~   81 (230)
T TIGR01184        11 GEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI----TEPGP-----DRMVVFQNYSLLPWLTVRENIALAVDR   81 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC----CCCCh-----hheEEecCcccCCCCCHHHHHHHHHHh
Confidence            457899999999999999999999999999999999632    22221     2479999987653211           


Q ss_pred             ----CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ----LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ----~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          ... +..+.+.++++.+++.   +..+  +||||||||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~gLD~~~~~~l  153 (230)
T TIGR01184        82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLD---EPFGALDALTRGNL  153 (230)
T ss_pred             cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCCcCCCHHHHHHH
Confidence                111 2233467778887763   3333  7999999999999999999999999   99999999888754

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=6e-29  Score=188.07  Aligned_cols=128  Identities=11%  Similarity=0.043  Sum_probs=98.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+...+++.++|++|++. .+...+          
T Consensus        33 Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~  108 (277)
T PRK13642         33 GEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGEL----LTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGME  108 (277)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE----CCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHH
Confidence            45799999999999999999999999999999999963    333344556778999999974 221110          


Q ss_pred             ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                         ... +..+.+.++++.+++.   +..+  +||||+|||+|||||+.+|+++++|   ||++.+|...++.+.
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllD---EPt~~LD~~~~~~l~  180 (277)
T PRK13642        109 NQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILD---ESTSMLDPTGRQEIM  180 (277)
T ss_pred             HcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHHH
Confidence               111 1124566777777652   3333  7999999999999999999999999   999999999887553

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.96  E-value=3.5e-29  Score=178.13  Aligned_cols=110  Identities=16%  Similarity=0.145  Sum_probs=89.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..    +... ...+++.++|++|++.+++ .+.        .+
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~----~~~~-~~~~~~~i~~~~q~~~~~~-~tv--------~~   93 (178)
T cd03247          28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP----VSDL-EKALSSLISVLNQRPYLFD-TTL--------RN   93 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEE----HHHH-HHHHHhhEEEEccCCeeec-ccH--------HH
Confidence            46789999999999999999999999999999999963    2222 3346678999999887653 111        11


Q ss_pred             HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      -+       ...+|+||+||++||||++.+|+++++|   ||++.+|....+.+
T Consensus        94 ~i-------~~~LS~G~~qrv~laral~~~p~~lllD---EP~~~LD~~~~~~l  137 (178)
T cd03247          94 NL-------GRRFSGGERQRLALARILLQDAPIVLLD---EPTVGLDPITERQL  137 (178)
T ss_pred             hh-------cccCCHHHHHHHHHHHHHhcCCCEEEEE---CCcccCCHHHHHHH
Confidence            11       3457999999999999999999999999   99999999887644

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.96  E-value=8.9e-29  Score=183.39  Aligned_cols=127  Identities=13%  Similarity=0.041  Sum_probs=96.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc--ccCCceEEEcceeehhhhccccHHHH-Hhhcchhccccccccccc--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL--SLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFST--------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~--------   70 (143)
                      +..++|+||||||||||+++|+|++  +|++|+|.++|.    ++...+.... +..++|++|++.+++..+        
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~----~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~  101 (243)
T TIGR01978        26 GEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQ----DLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSA  101 (243)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCE----ecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHH
Confidence            4579999999999999999999995  799999999996    3333333333 345899999987653210        


Q ss_pred             ---C---------Ch-hhHHHHHHHHHHhhhh----CCC---cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           71 ---L---------DI-QDKESVAKLVKLIDKS----NGY---IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        71 ---~---------~~-~~~~~~~~~l~~l~~~----~~~---~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                         .         .. +..+.+.++++.+++.    +..   .+||||+|||+|||||+.+|+++++|   ||++.+|..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~  178 (243)
T TIGR01978       102 LNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILD---EIDSGLDID  178 (243)
T ss_pred             HHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEec---CCcccCCHH
Confidence               0         00 1124566777777653    222   28999999999999999999999999   999999998


Q ss_pred             hhhhc
Q 032336          131 VQEKY  135 (143)
Q Consensus       131 ~~~~~  135 (143)
                      .++.+
T Consensus       179 ~~~~l  183 (243)
T TIGR01978       179 ALKIV  183 (243)
T ss_pred             HHHHH
Confidence            87754

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.3e-29  Score=206.71  Aligned_cols=131  Identities=17%  Similarity=0.124  Sum_probs=99.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc--ccccccc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY--SLVNFST---------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~--~l~~~~~---------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|+++|..+. .......+.+++.++||||++  .+++..+         
T Consensus       350 Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~-~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~  428 (623)
T PRK10261        350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID-TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPL  428 (623)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC-cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHH
Confidence            4579999999999999999999999999999999997332 111111233556799999996  3442111         


Q ss_pred             ----C-C-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 ----L-D-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 ----~-~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                          . . .+..+.+.++++.+++.    +.++  +||||||||+|||||+.+|++||+|   ||++.||...+..+.
T Consensus       429 ~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllD---EPts~LD~~~~~~i~  503 (623)
T PRK10261        429 RVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIAD---EAVSALDVSIRGQII  503 (623)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHH
Confidence                1 1 12235677888888762    4444  7999999999999999999999999   999999999887543

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.96  E-value=7.6e-29  Score=201.21  Aligned_cols=127  Identities=11%  Similarity=0.021  Sum_probs=99.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.++|..    +...+....+ +.++||+|++.+++..++         
T Consensus        37 Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  112 (510)
T PRK15439         37 GEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNP----CARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP  112 (510)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE----CCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc
Confidence            45789999999999999999999999999999999963    3333333333 469999999876532211         


Q ss_pred             -ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 -DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 -~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       ..+..+.+.++++.+++.   +..+  +||||||||+|||||+.+|++||+|   ||++.+|...++.+
T Consensus       113 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLD---EPt~~LD~~~~~~l  179 (510)
T PRK15439        113 KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD---EPTASLTPAETERL  179 (510)
T ss_pred             cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCCCCCCHHHHHHH
Confidence             112245677888888764   3333  7999999999999999999999999   99999999887744

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.96  E-value=8.7e-29  Score=181.88  Aligned_cols=122  Identities=12%  Similarity=0.042  Sum_probs=96.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--cc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--ST---------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--~~---------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++     ...++.++|++|++.++..  .+         
T Consensus         6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~----~~-----~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~   76 (223)
T TIGR03771         6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA----SP-----GKGWRHIGYVPQRHEFAWDFPISVAHTVMSGR   76 (223)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc----cc-----hHhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence            4679999999999999999999999999999999995    22     1235679999998764211  00         


Q ss_pred             ---------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ---------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ---------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                               ......+.+.++++.+++.   +..+  +|+||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilD---EP~~~LD~~~~~~l  152 (223)
T TIGR03771        77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLD---EPFTGLDMPTQELL  152 (223)
T ss_pred             ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence                     0112334577788887763   3333  7999999999999999999999999   99999999888754

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.96  E-value=7.2e-29  Score=185.67  Aligned_cols=132  Identities=16%  Similarity=0.160  Sum_probs=100.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhh---------hccccHHHHHhhcchhccccccccccc--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQA---------VHNSACRKLTKELCDVIEDYSLVNFST--   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~---------~~~~~~~~~~~~ig~V~Q~~~l~~~~~--   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+...         ........+++.++|++|++.+++..+  
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~  110 (257)
T PRK10619         31 GDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVL  110 (257)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHH
Confidence            467899999999999999999999999999999999633110         000112355678999999987653211  


Q ss_pred             ------------CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           71 ------------LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        71 ------------~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                                  .. .+..+.+.++++.+++.    +...  +||||+|||+|||||+.+|+++++|   ||++.+|...
T Consensus       111 enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~  187 (257)
T PRK10619        111 ENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD---EPTSALDPEL  187 (257)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHH
Confidence                        01 12234567788888763    2332  7999999999999999999999999   9999999988


Q ss_pred             hhhcc
Q 032336          132 QEKYI  136 (143)
Q Consensus       132 ~~~~~  136 (143)
                      ++.+.
T Consensus       188 ~~~l~  192 (257)
T PRK10619        188 VGEVL  192 (257)
T ss_pred             HHHHH
Confidence            87543

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.96  E-value=4.8e-29  Score=201.92  Aligned_cols=127  Identities=13%  Similarity=0.058  Sum_probs=98.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH-HHHhhcchhccccccccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR-KLTKELCDVIEDYSLVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~V~Q~~~l~~~~~----------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..    +...+.. ..++.++|++|++.+++..+          
T Consensus        30 Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  105 (501)
T PRK10762         30 GRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKE----VTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGRE  105 (501)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE----CCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccc
Confidence            46799999999999999999999999999999999963    2222222 23467999999976542110          


Q ss_pred             -------CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 -------LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 -------~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                             ... +..+.+.++++.+++.   +..+  +||||||||+|||||+.+|++||+|   ||++.+|...+..+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l  180 (501)
T PRK10762        106 FVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMD---EPTDALTDTETESL  180 (501)
T ss_pred             cccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcCCCCHHHHHHH
Confidence                   011 1234577888888764   3333  7999999999999999999999999   99999999887644

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8.5e-29  Score=187.08  Aligned_cols=129  Identities=13%  Similarity=0.052  Sum_probs=98.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccc--------c--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNF--------S--   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~--------~--   69 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+.  ........+++.++|++|++.  ++..        .  
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~--~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~  105 (275)
T PRK13639         28 GEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK--YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPL  105 (275)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECc--cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHH
Confidence            4679999999999999999999999999999999996331  112233456778999999963  2210        0  


Q ss_pred             --cCC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 --TLD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 --~~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        ... .+..+.+.++++.+++.   +..+  +||||+||++||||++.+|+++++|   ||++.+|...+..+
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD---EPt~gLD~~~~~~l  176 (275)
T PRK13639        106 NLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD---EPTSGLDPMGASQI  176 (275)
T ss_pred             HcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence              011 12234567778877763   3443  7999999999999999999999999   99999999888754

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.96  E-value=7.4e-29  Score=185.69  Aligned_cols=132  Identities=14%  Similarity=0.047  Sum_probs=95.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehh-hhccccHHH----HHhhcchhccccc--cccccc----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQ-AVHNSACRK----LTKELCDVIEDYS--LVNFST----   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~-~~~~~~~~~----~~~~ig~V~Q~~~--l~~~~~----   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..... .+...+...    .++.++|++|++.  ++...+    
T Consensus        32 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~  111 (258)
T PRK11701         32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGN  111 (258)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHH
Confidence            46799999999999999999999999999999999962000 022222222    2456999999974  211100    


Q ss_pred             -------C---C-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           71 -------L---D-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        71 -------~---~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                             .   . .+....+.++++.+++.    +..+  +||||+|||+|||||+.+|+++++|   ||++.+|...++
T Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllD---EPt~~LD~~~~~  188 (258)
T PRK11701        112 IGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMD---EPTGGLDVSVQA  188 (258)
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHH
Confidence                   0   0 11234556777777652    2333  7999999999999999999999999   999999998877


Q ss_pred             hcc
Q 032336          134 KYI  136 (143)
Q Consensus       134 ~~~  136 (143)
                      .+.
T Consensus       189 ~l~  191 (258)
T PRK11701        189 RLL  191 (258)
T ss_pred             HHH
Confidence            543

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=9.7e-29  Score=184.61  Aligned_cols=129  Identities=16%  Similarity=0.098  Sum_probs=96.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+++|     ++|+|+++|..+..  .......+++.++|++|++.++...       
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~  110 (254)
T PRK14273         33 NSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS--NNFDILELRRKIGMVFQTPNPFLMSIYDNISY  110 (254)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccc--ccccHHHHhhceEEEeeccccccCcHHHHHHH
Confidence            467899999999999999999999987     48999999963211  1122345677899999998765210       


Q ss_pred             -----c-CCh-hhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 -----T-LDI-QDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 -----~-~~~-~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                           . ... ...+.+.++++.+++       .+...  +||||+|||+|||||+.+|+++++|   ||++.+|....+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD---EPt~~LD~~~~~  187 (254)
T PRK14273        111 GPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMD---EPTSALDPISTG  187 (254)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCcccCHHHHH
Confidence                 0 011 123456666776654       23333  7999999999999999999999999   999999998877


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       188 ~l  189 (254)
T PRK14273        188 KI  189 (254)
T ss_pred             HH
Confidence            54

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8.9e-29  Score=185.50  Aligned_cols=129  Identities=12%  Similarity=0.025  Sum_probs=97.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+++     |++|+|.++|..+..  .......+++.++|+||++.+++..       
T Consensus        39 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~  116 (260)
T PRK10744         39 NQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT--PKQDIALLRAKVGMVFQKPTPFPMSIYDNIAF  116 (260)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc--cccchHHHhcceEEEecCCccCcCcHHHHHhh
Confidence            46789999999999999999999986     589999999973311  1223445677899999998765310       


Q ss_pred             ------cCCh-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 ------TLDI-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 ------~~~~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                            .... +..+.+.++++.+++       .+..  .+||||+|||+||||++.+|+++++|   ||++.+|...++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~  193 (260)
T PRK10744        117 GVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLD---EPCSALDPISTG  193 (260)
T ss_pred             hHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEc---CCCccCCHHHHH
Confidence                  0111 122456777777764       2333  37999999999999999999999999   999999998876


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       194 ~l  195 (260)
T PRK10744        194 RI  195 (260)
T ss_pred             HH
Confidence            44

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=6.9e-29  Score=212.00  Aligned_cols=125  Identities=17%  Similarity=0.189  Sum_probs=99.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCChh--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLDIQ--   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~~~--   74 (143)
                      +..++|+|||||||||++++|.+++.|++|+|.++|.    ++.....+.+|.+||.|+|+|.||..     ..+.++  
T Consensus       379 G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~----di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~da  454 (1228)
T KOG0055|consen  379 GQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGE----DIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDA  454 (1228)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCc----cchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcc
Confidence            4679999999999999999999999999999999996    67778889999999999999988731     112221  


Q ss_pred             hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                      ..+.++++.+..+.       .         .+..+||||||||+|||||+.+|++||||   |||+-||.+...
T Consensus       455 t~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLD---EaTSaLD~~se~  526 (1228)
T KOG0055|consen  455 TREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLD---EATSALDAESER  526 (1228)
T ss_pred             cHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEec---CcccccCHHHHH
Confidence            13344444433221       1         23338999999999999999999999999   999999987654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.96  E-value=9e-29  Score=198.60  Aligned_cols=129  Identities=18%  Similarity=0.148  Sum_probs=103.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc--ccccc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL--VNFST---------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l--~~~~~---------   70 (143)
                      ++.+||||+||||||||.|+|+|+.+|++|+|.++|.+ . ++.....+..++.+-+|||++.-  .|..+         
T Consensus       317 GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~-~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL  394 (539)
T COG1123         317 GETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-L-DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL  394 (539)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-c-ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence            56899999999999999999999999999999999964 1 23333456677889999999863  22211         


Q ss_pred             -----C-ChhhHHHHHHHHHHhhh----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 -----L-DIQDKESVAKLVKLIDK----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 -----~-~~~~~~~~~~~l~~l~~----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                           . ..+..+++.++++++++    .++|+  +||||||||+|||||+.+|+++++|   ||++.||..+|...
T Consensus       395 ~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~D---Ep~SaLDvsvqa~V  468 (539)
T COG1123         395 RIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILD---EPVSALDVSVQAQV  468 (539)
T ss_pred             hhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEec---CCccccCHHHHHHH
Confidence                 1 12334568888999876    35665  7999999999999999999999999   99999999887643

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.96  E-value=9e-29  Score=202.93  Aligned_cols=128  Identities=15%  Similarity=0.134  Sum_probs=102.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-C-hh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-D-IQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~-~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++|+||++.+|..     ... . ..
T Consensus       366 Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~----~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~  441 (576)
T TIGR02204       366 GETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV----DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDA  441 (576)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE----EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCC
Confidence            4679999999999999999999999999999999997    55667778888999999999988731     111 1 11


Q ss_pred             hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      +.+.+.++++.+++.                .+..+||||+||+++|||+..+|+++++|   ||++.+|..+.+.++
T Consensus       442 ~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililD---Epts~lD~~~~~~i~  516 (576)
T TIGR02204       442 TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLD---EATSALDAESEQLVQ  516 (576)
T ss_pred             CHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEe---CcccccCHHHHHHHH
Confidence            234555666654321                12237999999999999999999999999   999999999877554

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8.3e-29  Score=188.27  Aligned_cols=131  Identities=16%  Similarity=0.097  Sum_probs=97.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcc-ccHHHHHhhcchhccccc--cccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHN-SACRKLTKELCDVIEDYS--LVNF----------   68 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~~~~~ig~V~Q~~~--l~~~----------   68 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+...... .....+++.++|++|++.  ++..          
T Consensus        37 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~  116 (289)
T PRK13645         37 NKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGP  116 (289)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHH
Confidence            457899999999999999999999999999999999633210011 123456678999999863  2211          


Q ss_pred             c--cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           69 S--TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        69 ~--~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .  .... +..+.+.++++.+++.    +..+  +||||+|||+|||||+.+|++|++|   ||++.+|...++.+
T Consensus       117 ~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD---EPt~~LD~~~~~~l  189 (289)
T PRK13645        117 VNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLD---EPTGGLDPKGEEDF  189 (289)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCcccCCHHHHHHH
Confidence            0  0111 1124456677777652    3333  7999999999999999999999999   99999999888744

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.95  E-value=7.1e-29  Score=201.28  Aligned_cols=128  Identities=10%  Similarity=0.043  Sum_probs=99.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHH-HHhhcchhccccccccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRK-LTKELCDVIEDYSLVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-~~~~ig~V~Q~~~l~~~~~----------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..    +...+... .++.++||||++.+++..+          
T Consensus        31 Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~----i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  106 (510)
T PRK09700         31 GEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN----YNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRH  106 (510)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEE----CCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccc
Confidence            46789999999999999999999999999999999963    33333332 3456999999976542110          


Q ss_pred             -----CC------hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           71 -----LD------IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        71 -----~~------~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                           ..      .+..+.+.++++.+++.   +..+  +||||||||+|||||+.+|+++|+|   ||++.+|...+..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLD---EPt~~LD~~~~~~  183 (510)
T PRK09700        107 LTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMD---EPTSSLTNKEVDY  183 (510)
T ss_pred             cccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHH
Confidence                 00      12234677788888764   3333  7999999999999999999999999   9999999988875


Q ss_pred             cc
Q 032336          135 YI  136 (143)
Q Consensus       135 ~~  136 (143)
                      +.
T Consensus       184 l~  185 (510)
T PRK09700        184 LF  185 (510)
T ss_pred             HH
Confidence            43

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.95  E-value=1.4e-28  Score=181.48  Aligned_cols=127  Identities=16%  Similarity=0.143  Sum_probs=92.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +........++.++|++|++.+++..     ..  ...
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~  103 (234)
T cd03251          28 GETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHD----VRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGA  103 (234)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEE----hhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCC
Confidence            45789999999999999999999999999999999963    33334455677899999998765311     00  000


Q ss_pred             hHHHH---------HHHHHHh--hh---hCC--CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           75 DKESV---------AKLVKLI--DK---SNG--YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        75 ~~~~~---------~~~l~~l--~~---~~~--~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ....+         .+.++.+  ++   .+.  ..+|+||+|||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD---EP~~~LD~~~~~~l  177 (234)
T cd03251         104 TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILD---EATSALDTESERLV  177 (234)
T ss_pred             CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHH
Confidence            11111         2222222  11   122  237999999999999999999999999   99999999887744

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.95  E-value=1.5e-28  Score=184.34  Aligned_cols=131  Identities=15%  Similarity=0.130  Sum_probs=98.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcceeehhhh-ccccHHHHHhhcchhccccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSNVFYLQAV-HNSACRKLTKELCDVIEDYSLVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~-~~~~~~~~~~~ig~V~Q~~~l~~~~~-------   70 (143)
                      ++.++|+||||||||||+++|+|+++|+   +|+|.++|..+.... .......+++.++|+||++.+++..+       
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~  109 (262)
T PRK09984         30 GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLI  109 (262)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHh
Confidence            4679999999999999999999999886   499999997332100 01123445677999999987653111       


Q ss_pred             ---------------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           71 ---------------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        71 ---------------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                                     ...+....+.++++.+++.   +..+  +|+||+|||+||||++.+|+++++|   ||++.+|..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~  186 (262)
T PRK09984        110 GALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD---EPIASLDPE  186 (262)
T ss_pred             hhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEec---CccccCCHH
Confidence                           0112234677788888763   3333  7999999999999999999999999   999999998


Q ss_pred             hhhhc
Q 032336          131 VQEKY  135 (143)
Q Consensus       131 ~~~~~  135 (143)
                      .++.+
T Consensus       187 ~~~~l  191 (262)
T PRK09984        187 SARIV  191 (262)
T ss_pred             HHHHH
Confidence            87744

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.95  E-value=1.2e-28  Score=181.99  Aligned_cols=127  Identities=17%  Similarity=0.170  Sum_probs=93.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++.......+++.++|++|++.+++..     ..  ...
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~----~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~  102 (236)
T cd03253          27 GKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQ----DIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDA  102 (236)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCE----EhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCC
Confidence            4678999999999999999999999999999999996    333344555677899999998765310     00  000


Q ss_pred             hHHHHHHHHHHhhh--------------hC--CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           75 DKESVAKLVKLIDK--------------SN--GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        75 ~~~~~~~~l~~l~~--------------~~--~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ....+.+.++..++              ..  ...+|+||+|||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       103 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllD---EP~~~LD~~~~~~l  176 (236)
T cd03253         103 TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLD---EATSALDTHTEREI  176 (236)
T ss_pred             CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence            11112222222111              01  2247999999999999999999999999   99999999887643

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.95  E-value=1.3e-28  Score=183.80  Aligned_cols=131  Identities=11%  Similarity=-0.027  Sum_probs=94.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehh-hhccccHHH----HHhhcchhcccccccccc------c
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQ-AVHNSACRK----LTKELCDVIEDYSLVNFS------T   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~-~~~~~~~~~----~~~~ig~V~Q~~~l~~~~------~   70 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.++|..... ++...+...    +++.++|++|++.+....      .
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~  108 (253)
T TIGR02323        29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGAN  108 (253)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHH
Confidence            46789999999999999999999999999999999852000 022222222    235699999986421100      0


Q ss_pred             -------C----ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           71 -------L----DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        71 -------~----~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                             .    ..+..+.+.++++.+++.    +..+  +||||+|||+|||||+.+|+++++|   ||++.+|...++
T Consensus       109 i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllD---EP~~~LD~~~~~  185 (253)
T TIGR02323       109 IGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMD---EPTGGLDVSVQA  185 (253)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHHH
Confidence                   0    011234566777777652    2233  7999999999999999999999999   999999998876


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       186 ~l  187 (253)
T TIGR02323       186 RL  187 (253)
T ss_pred             HH
Confidence            44

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.95  E-value=1.6e-28  Score=178.55  Aligned_cols=124  Identities=14%  Similarity=0.043  Sum_probs=95.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc----------C
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------L   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------~   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    ...  . ..++.++|++|+..+++..+          .
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~--~-~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~  100 (207)
T PRK13539         28 GEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD----IDD--P-DVAEACHYLGHRNAMKPALTVAENLEFWAAF  100 (207)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe----Ccc--h-hhHhhcEEecCCCcCCCCCcHHHHHHHHHHh
Confidence            46789999999999999999999999999999999963    211  1 15677999998766542211          1


Q ss_pred             ChhhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 DIQDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ~~~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .....+.+.++++.+++.   +..  .+||||+||++||||++.+|+++++|   ||++.+|....+.+
T Consensus       101 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~l  166 (207)
T PRK13539        101 LGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILD---EPTAALDAAAVALF  166 (207)
T ss_pred             cCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence            111223467788887763   333  27999999999999999999999999   99999999887744

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.95  E-value=1.2e-28  Score=201.71  Aligned_cols=127  Identities=9%  Similarity=0.075  Sum_probs=104.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc----CChhhHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----LDIQDKE   77 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----~~~~~~~   77 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++||+|++.+|....    ......+
T Consensus       368 G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~----~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~  443 (555)
T TIGR01194       368 GDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGA----AVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLD  443 (555)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE----ECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHH
Confidence            4689999999999999999999999999999999997    4556677788899999999998873211    1112345


Q ss_pred             HHHHHHHHhhhh-------CC----CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           78 SVAKLVKLIDKS-------NG----YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        78 ~~~~~l~~l~~~-------~~----~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .+.++++.+++.       .+    ..+|||||||++||||++.+|+++++|   ||++.+|..+.+.+
T Consensus       444 ~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililD---E~ts~LD~~~~~~i  509 (555)
T TIGR01194       444 NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFD---EWAADQDPAFKRFF  509 (555)
T ss_pred             HHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCCHHHHHHH
Confidence            567778777642       22    237999999999999999999999999   99999999988755

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1e-28  Score=200.28  Aligned_cols=128  Identities=13%  Similarity=0.044  Sum_probs=99.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc--CCceEEEcceeehhhhccccHH-HHHhhcchhccccccccccc--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL--IGSNICCSNVFYLQAVHNSACR-KLTKELCDVIEDYSLVNFST--------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~V~Q~~~l~~~~~--------   70 (143)
                      ++.++|+||||||||||+|+|+|+++|  ++|+|.++|..    +...+.. ..++.++||||++.+++..+        
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  106 (506)
T PRK13549         31 GEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEE----LQASNIRDTERAGIAIIHQELALVKELSVLENIFLG  106 (506)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE----CCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhc
Confidence            467999999999999999999999986  89999999963    3333333 23567999999976553111        


Q ss_pred             --------CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 --------LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 --------~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                              ... +..+.+.++++.+++.   +..+  +||||||||+|||||+.+|+++|+|   ||++.+|...+..++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l~  183 (506)
T PRK13549        107 NEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILD---EPTASLTESETAVLL  183 (506)
T ss_pred             ccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHHH
Confidence                    011 2234677888888763   3333  7999999999999999999999999   999999998877443

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.95  E-value=9.3e-29  Score=176.45  Aligned_cols=126  Identities=14%  Similarity=0.071  Sum_probs=99.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+|||||||||+||+|++++.|++|.|+++|.    +... .+...|++||+++.+..++..++           
T Consensus        28 Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~----d~~~-~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L  102 (245)
T COG4555          28 GEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGV----DTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARL  102 (245)
T ss_pred             ceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeec----cccc-ChHHHhhhcceecCCcChhhhhhHHHHHHHHHHH
Confidence            4578999999999999999999999999999999996    3222 34567888999997766652211           


Q ss_pred             ---CChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ---LDIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ---~~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         ...+-..+++++.+++++   .++.+  +|-|++|||.|||||+++|+++++|   ||++.+|.-...++
T Consensus       103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD---EP~sGLDi~~~r~~  172 (245)
T COG4555         103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD---EPTSGLDIRTRRKF  172 (245)
T ss_pred             hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc---CCCCCccHHHHHHH
Confidence               123345667777777765   34444  7999999999999999999999999   99999998776543

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.7e-28  Score=183.73  Aligned_cols=128  Identities=11%  Similarity=0.078  Sum_probs=96.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------   70 (143)
                      +..++|+||||||||||+++|+|+++|     ++|+|.++|..+..  .......+++.++|++|++.+++ .+      
T Consensus        38 Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~  114 (258)
T PRK14268         38 NSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE--PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVA  114 (258)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc--ccchHHHHhhhEEEEecCCccCc-ccHHHHHH
Confidence            457999999999999999999999975     79999999963321  11122345677999999987653 11      


Q ss_pred             -------CCh-hhHHHHHHHHHHhhhh-------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           71 -------LDI-QDKESVAKLVKLIDKS-------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        71 -------~~~-~~~~~~~~~l~~l~~~-------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                             ... +..+.+.++++.+++.       +...  +||||+|||+|||||+.+|+++++|   ||++.+|...++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EPt~~LD~~~~~  191 (258)
T PRK14268        115 YGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFD---EPTSALDPISTA  191 (258)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCCcccCHHHHH
Confidence                   111 1123456677776541       2232  7999999999999999999999999   999999998887


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       192 ~l  193 (258)
T PRK14268        192 RI  193 (258)
T ss_pred             HH
Confidence            44

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.8e-28  Score=184.57  Aligned_cols=129  Identities=12%  Similarity=0.031  Sum_probs=97.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+++|     ++|+|+++|..+..  .......+++.++|++|++.+++..       
T Consensus        45 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~  122 (267)
T PRK14235         45 KTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD--PRLDVVELRARVGMVFQKPNPFPKSIYENVAY  122 (267)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc--cccchHHHhhceEEEecCCCCCCCcHHHHHHH
Confidence            467899999999999999999999975     89999999963311  1123345677899999998765310       


Q ss_pred             -----cC--Ch-hhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           70 -----TL--DI-QDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        70 -----~~--~~-~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                           ..  .. +..+.+.++++.+++.       +..  .+||||+|||+|||||+.+|+++++|   ||++.+|....
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~  199 (267)
T PRK14235        123 GPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMD---EPCSALDPIAT  199 (267)
T ss_pred             HHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCcCCCHHHH
Confidence                 00  11 1234566777777652       222  37999999999999999999999999   99999999887


Q ss_pred             hhc
Q 032336          133 EKY  135 (143)
Q Consensus       133 ~~~  135 (143)
                      +.+
T Consensus       200 ~~l  202 (267)
T PRK14235        200 AKV  202 (267)
T ss_pred             HHH
Confidence            644

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.95  E-value=1.5e-28  Score=179.52  Aligned_cols=124  Identities=10%  Similarity=0.002  Sum_probs=96.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    ..   ...++.++|++|++.+++..+.          
T Consensus        37 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i----~~---~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~  109 (214)
T PRK13543         37 GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA----TR---GDRSRFMAYLGHLPGLKADLSTLENLHFLCGL  109 (214)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEc----cc---hhhhhceEEeecCcccccCCcHHHHHHHHHHh
Confidence            467899999999999999999999999999999999632    21   1234569999998776532111          


Q ss_pred             -ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 -DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 -~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       .....+.+.++++.+++.   +..+  +|+||+|||++|||++.+|+++++|   ||++.+|....+.+
T Consensus       110 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l  176 (214)
T PRK13543        110 HGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLD---EPYANLDLEGITLV  176 (214)
T ss_pred             cCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence             111234556777777753   3333  7999999999999999999999999   99999999887754

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.95  E-value=1.7e-28  Score=198.16  Aligned_cols=127  Identities=11%  Similarity=0.091  Sum_probs=98.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc--c------cccC--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV--N------FSTL--   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~--~------~~~~--   71 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|.    ++...+...+++.++|++|++.+.  .      ..+.  
T Consensus        29 Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~  104 (490)
T PRK10938         29 GDSWAFVGANGSGKSALARALAGELPLLSGERQSQFS----HITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAE  104 (490)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCc----ccccCCHHHHHHHhceeccCcchhhcccchhhccccHHH
Confidence            4578999999999999999999999999999999885    232333444566799999986431  0      0111  


Q ss_pred             ----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          ..+..+++.++++.+++.   +..+  +||||||||+||+||+.+|+++++|   ||++.+|...++.+
T Consensus       105 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l  174 (490)
T PRK10938        105 IIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILD---EPFDGLDVASRQQL  174 (490)
T ss_pred             hcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCCHHHHHHH
Confidence                112245677888888763   3443  7999999999999999999999999   99999999888743

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.5e-28  Score=199.39  Aligned_cols=127  Identities=13%  Similarity=0.041  Sum_probs=97.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhcccc---ccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDY---SLVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~---~l~~~~~-------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|+++|..+    ..... ...++.++||||++   .+++..+       
T Consensus       289 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~----~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~  364 (510)
T PRK09700        289 GEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDI----SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAI  364 (510)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEEC----CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcc
Confidence            457899999999999999999999999999999999632    22222 34556799999973   3331100       


Q ss_pred             --------C-------C-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhh
Q 032336           71 --------L-------D-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSL  128 (143)
Q Consensus        71 --------~-------~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~  128 (143)
                              .       . ..+...+.++++.+++.    +..+  +||||||||+|||||+.+|++|++|   ||++.+|
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD---EPt~~LD  441 (510)
T PRK09700        365 SRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD---EPTRGID  441 (510)
T ss_pred             ccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEEC---CCCCCcC
Confidence                    0       0 12234567888888773    3333  7999999999999999999999999   9999999


Q ss_pred             hhhhhhc
Q 032336          129 AEVQEKY  135 (143)
Q Consensus       129 ~~~~~~~  135 (143)
                      ...++.+
T Consensus       442 ~~~~~~l  448 (510)
T PRK09700        442 VGAKAEI  448 (510)
T ss_pred             HHHHHHH
Confidence            9888744

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.95  E-value=2.9e-28  Score=181.68  Aligned_cols=126  Identities=10%  Similarity=0.072  Sum_probs=96.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++ .+|+|.++|.    ++.......+++.++|+||++.++...+           
T Consensus        22 Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~----~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~   96 (248)
T PRK03695         22 GEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQ----PLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPD   96 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCE----ecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCcc
Confidence            46789999999999999999999986 5899999996    3333445556677999999875432110           


Q ss_pred             -CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhh-------cCCcccccCCccccchhhhhhhhhc
Q 032336           71 -LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVR-------NVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 -~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~-------~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       .. .+..+.+.++++.+++.   +..+  +|+||+|||+||||++.       +|+++++|   ||++.+|...++.+
T Consensus        97 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD---EPt~~LD~~~~~~l  172 (248)
T PRK03695         97 KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD---EPMNSLDVAQQAAL  172 (248)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc---CCcccCCHHHHHHH
Confidence             11 12234677888888763   3333  79999999999999998       67999999   99999999887643

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.95  E-value=1.6e-28  Score=181.82  Aligned_cols=126  Identities=17%  Similarity=0.106  Sum_probs=94.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhc-cccccccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVI-EDYSLVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~-Q~~~l~~~~~----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|...    .. .....++.++|++ |.+.+++..+          
T Consensus        47 Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~----~~-~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~  121 (236)
T cd03267          47 GEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP----WK-RRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAA  121 (236)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc----cc-cchhhcccEEEEcCCccccCCCCcHHHHHHHHHH
Confidence            467899999999999999999999999999999999632    11 1234556799998 4444432111          


Q ss_pred             ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         ... +..+.+.++++.+++.   +..+  +||||+||+++|+|++.+|+++++|   ||++.+|...++.+
T Consensus       122 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~l  192 (236)
T cd03267         122 IYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLD---EPTIGLDVVAQENI  192 (236)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHH
Confidence               111 1223456667776653   3333  7999999999999999999999999   99999999887754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.3e-28  Score=183.03  Aligned_cols=129  Identities=10%  Similarity=0.008  Sum_probs=96.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-----   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-----   71 (143)
                      +..++|+||||||||||+++|+|+++|     ++|+|.++|..+..  .......+++.++|++|++.+++..++     
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~  107 (258)
T PRK14241         30 RSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG--PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVV  107 (258)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccc--cccChHHHhcceEEEccccccCCCCcHHHHHH
Confidence            467899999999999999999999974     69999999963310  112234566789999999776532110     


Q ss_pred             ---------C-hhhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           72 ---------D-IQDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        72 ---------~-~~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                               . .+..+.+.++++.+++       .+..+  +||||+|||+||||++.+|+++++|   ||++.+|....
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~  184 (258)
T PRK14241        108 AGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD---EPCSALDPIST  184 (258)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHH
Confidence                     1 1123456667777754       12332  7999999999999999999999999   99999998877


Q ss_pred             hhc
Q 032336          133 EKY  135 (143)
Q Consensus       133 ~~~  135 (143)
                      +.+
T Consensus       185 ~~l  187 (258)
T PRK14241        185 LAI  187 (258)
T ss_pred             HHH
Confidence            643

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.95  E-value=2e-28  Score=179.89  Aligned_cols=127  Identities=16%  Similarity=0.151  Sum_probs=94.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc----------cC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS----------TL   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~----------~~   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++........++.++|++|++.+++..          ..
T Consensus        40 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~  115 (226)
T cd03248          40 GEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK----PISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSC  115 (226)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCC----chHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCC
Confidence            4578999999999999999999999999999999996    333334445667899999998765210          00


Q ss_pred             Chhh-H-----HHHHHHHHHh--hhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 DIQD-K-----ESVAKLVKLI--DKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ~~~~-~-----~~~~~~l~~l--~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .... .     ..+.++++.+  ++.   +..  .+||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       116 ~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l  189 (226)
T cd03248         116 SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILD---EATSALDAESEQQV  189 (226)
T ss_pred             CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence            0000 0     1134455555  332   222  27999999999999999999999999   99999999887744

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.9e-28  Score=184.92  Aligned_cols=124  Identities=13%  Similarity=0.090  Sum_probs=94.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc---c-----cc----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV---N-----FS----   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~---~-----~~----   69 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..+    ..   ...++.++|+||++.+.   .     ..    
T Consensus        33 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i----~~---~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~  105 (272)
T PRK15056         33 GSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT----RQ---ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGR  105 (272)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEh----HH---hhccceEEEeccccccccCCCcchhhheeccc
Confidence            467899999999999999999999999999999999632    11   11224599999986531   0     00    


Q ss_pred             -c-------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 -T-------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 -~-------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       .       ......+.+.++++.+++.   +..+  +||||+|||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD---EPt~~LD~~~~~~l  181 (272)
T PRK15056        106 YGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD---EPFTGVDVKTEARI  181 (272)
T ss_pred             ccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHH
Confidence             0       0112234567778887763   3443  7999999999999999999999999   99999999887744

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.2e-28  Score=185.72  Aligned_cols=128  Identities=11%  Similarity=0.069  Sum_probs=97.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-----   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-----   71 (143)
                      +..++|+||||||||||+++|+|+++     |++|+|.++|..+..  .......+++.++|++|++.+++. ++     
T Consensus        65 Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~--~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~  141 (285)
T PRK14254         65 NQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD--ADVDPVALRRRIGMVFQKPNPFPK-SIYDNVA  141 (285)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc--cccchHhhhccEEEEecCCccCcC-CHHHHHH
Confidence            45789999999999999999999987     689999999963311  112234566789999999876531 10     


Q ss_pred             --------ChhhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           72 --------DIQDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        72 --------~~~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                              .....+.+.++++.+++       .+..  .+||||||||+|||||+.+|+++|+|   ||++.+|...++.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLD---EPts~LD~~~~~~  218 (285)
T PRK14254        142 YGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMD---EPASALDPVATSK  218 (285)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCCCCCHHHHHH
Confidence                    11123456677777654       1333  37999999999999999999999999   9999999988764


Q ss_pred             c
Q 032336          135 Y  135 (143)
Q Consensus       135 ~  135 (143)
                      +
T Consensus       219 l  219 (285)
T PRK14254        219 I  219 (285)
T ss_pred             H
Confidence            4

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.95  E-value=1.9e-28  Score=179.83  Aligned_cols=131  Identities=11%  Similarity=0.039  Sum_probs=95.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH---HH-Hhhcchhccccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR---KL-TKELCDVIEDYSLVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~---~~-~~~ig~V~Q~~~l~~~~~-------   70 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|.....++...+..   .. ++.++|++|++.+++..+       
T Consensus        34 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~  113 (224)
T TIGR02324        34 GECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAE  113 (224)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHH
Confidence            4578999999999999999999999999999999741000012222222   22 356999999987653211       


Q ss_pred             ------CCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ------LDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ------~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                            ... ...+.+.++++.+++.    +..+  +|+||+||++|||||+.+|+++++|   ||++.+|...++.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~~LD~~~~~~l  188 (224)
T TIGR02324       114 PLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLD---EPTASLDAANRQVV  188 (224)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence                  111 2234567778877653    2223  7999999999999999999999999   99999999888754

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.95  E-value=1.8e-28  Score=185.33  Aligned_cols=125  Identities=10%  Similarity=0.051  Sum_probs=98.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----c-cCChhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----S-TLDIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~-~~~~~~   75 (143)
                      +..++|+||||||||||+++|+|+++ ++|+|+++|.    ++.......+++.++|+||++.+|+.     . ......
T Consensus        30 Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~----~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~  104 (275)
T cd03289          30 GQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGV----SWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWS  104 (275)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCE----EhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCC
Confidence            46799999999999999999999997 7899999996    34445566778899999999987731     1 111112


Q ss_pred             HHHHHHHHHHhhhh---CC-------------CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           76 KESVAKLVKLIDKS---NG-------------YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        76 ~~~~~~~l~~l~~~---~~-------------~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      .+.+.++++.+++.   ..             ..+|+||+||+++|||++.+|+++++|   ||++.+|..+.+.
T Consensus       105 ~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlD---Epts~LD~~~~~~  176 (275)
T cd03289         105 DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD---EPSAHLDPITYQV  176 (275)
T ss_pred             HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---CccccCCHHHHHH
Confidence            34566677776642   11             238999999999999999999999999   9999999987763

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.95  E-value=2.5e-28  Score=204.27  Aligned_cols=128  Identities=16%  Similarity=0.132  Sum_probs=102.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-C-hh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-D-IQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~-~~   74 (143)
                      +..++|+|+||||||||+++|+|+++|++|+|.++|.    ++...+...+|+.++||+|++.+|..     ... . ..
T Consensus       483 G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~----~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~  558 (694)
T TIGR01846       483 GEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGV----DLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGA  558 (694)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----ehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCC
Confidence            4689999999999999999999999999999999997    56667778899999999999988731     111 1 12


Q ss_pred             hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ..+.+.++++..++.                ....+||||+||+++|||++++|+++++|   ||++.+|..+.+++.
T Consensus       559 ~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililD---Epts~LD~~~~~~i~  633 (694)
T TIGR01846       559 PFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFD---EATSALDYESEALIM  633 (694)
T ss_pred             CHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE---CCCcCCCHHHHHHHH
Confidence            234455555554320                22337999999999999999999999999   999999998877543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.95  E-value=2.3e-28  Score=200.57  Aligned_cols=128  Identities=13%  Similarity=0.164  Sum_probs=100.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCC--hh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLD--IQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~--~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++|++|++.+|..     ....  ..
T Consensus       341 G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~----~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~  416 (569)
T PRK10789        341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDI----PLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDA  416 (569)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCE----EHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCC
Confidence            4679999999999999999999999999999999997    45556677888999999999988731     1111  11


Q ss_pred             hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ..+.+.++++.+++       .         ....+||||+||+++|||++.+|+++++|   ||++.+|....+++.
T Consensus       417 ~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlD---Epts~LD~~~~~~i~  491 (569)
T PRK10789        417 TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD---DALSAVDGRTEHQIL  491 (569)
T ss_pred             CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---CccccCCHHHHHHHH
Confidence            23344555554332       1         12237999999999999999999999999   999999998887554

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.95  E-value=4.5e-28  Score=183.00  Aligned_cols=128  Identities=12%  Similarity=0.093  Sum_probs=98.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccC--------CceEEEcceeehhhhccccHHHHHhhcchhccccccccccc---
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI--------GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST---   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~--------~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~---   70 (143)
                      +..++|+||||||||||+++|+|+++|+        +|+|.++|.    ++.......+++.++|+||++.++...+   
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~----~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e  102 (272)
T PRK13547         27 GRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE----PLAAIDAPRLARLRAVLPQAAQPAFAFSARE  102 (272)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCE----EcccCCHHHHHhhcEEecccCCCCCCCcHHH
Confidence            4578999999999999999999999998        999999996    3333344556667899999865321000   


Q ss_pred             ---------------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhh---------cCCcccccCCc
Q 032336           71 ---------------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVR---------NVDWDYYRYPS  121 (143)
Q Consensus        71 ---------------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~---------~p~~llld~~~  121 (143)
                                     ...+..+.+.++++.+++.   +..+  +||||+|||+|||||+.         +|+++++|   
T Consensus       103 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLD---  179 (272)
T PRK13547        103 IVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLD---  179 (272)
T ss_pred             HHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEc---
Confidence                           0112334567788887763   3333  79999999999999994         99999999   


Q ss_pred             cccchhhhhhhhhcc
Q 032336          122 FHLFQSLAEVQEKYI  136 (143)
Q Consensus       122 ~~~~~~~~~~~~~~~  136 (143)
                      ||++.+|...++.+.
T Consensus       180 EPt~~LD~~~~~~l~  194 (272)
T PRK13547        180 EPTAALDLAHQHRLL  194 (272)
T ss_pred             CccccCCHHHHHHHH
Confidence            999999998887543

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.95  E-value=2.3e-28  Score=180.91  Aligned_cols=127  Identities=17%  Similarity=0.136  Sum_probs=91.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +........++.++|++|++.+++..     ..  ...
T Consensus        29 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~  104 (238)
T cd03249          29 GKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVD----IRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDA  104 (238)
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEe----hhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCC
Confidence            46789999999999999999999999999999999963    33333445566799999997765310     00  000


Q ss_pred             hHHHHHHHHHHhh-----------h---hC--CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           75 DKESVAKLVKLID-----------K---SN--GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        75 ~~~~~~~~l~~l~-----------~---~~--~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ....+.+.++..+           +   .+  ...+||||+|||.||||++.+|+++++|   ||++.+|...++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP~~gLD~~~~~~l  178 (238)
T cd03249         105 TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLD---EATSALDAESEKLV  178 (238)
T ss_pred             CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHH
Confidence            0111222222111           1   11  1237999999999999999999999999   99999999887743

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.95  E-value=1.6e-28  Score=178.13  Aligned_cols=120  Identities=15%  Similarity=0.124  Sum_probs=90.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc---cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS---LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKES   78 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~   78 (143)
                      +..++|+||||||||||+++|+|+++   |++|+|.++|..    +.... ...++.++|++|+..+++..++.+.    
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~----~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~----  103 (202)
T cd03233          33 GEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP----YKEFA-EKYPGEIIYVSEEDVHFPTLTVRET----  103 (202)
T ss_pred             CcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE----Cccch-hhhcceEEEEecccccCCCCcHHHH----
Confidence            46789999999999999999999999   899999999963    22222 2455679999998776543332111    


Q ss_pred             HHHHHHHhhhhCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           79 VAKLVKLIDKSNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        79 ~~~~l~~l~~~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +..... .. .+..+  +|+||+||++||||++.+|+++++|   ||++.+|...++.+
T Consensus       104 l~~~~~-~~-~~~~~~~LS~Ge~qrl~laral~~~p~llllD---EPt~~LD~~~~~~~  157 (202)
T cd03233         104 LDFALR-CK-GNEFVRGISGGERKRVSIAEALVSRASVLCWD---NSTRGLDSSTALEI  157 (202)
T ss_pred             Hhhhhh-hc-cccchhhCCHHHHHHHHHHHHHhhCCCEEEEc---CCCccCCHHHHHHH
Confidence            111010 11 23333  7999999999999999999999999   99999999887744

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.95  E-value=2.6e-28  Score=198.77  Aligned_cols=127  Identities=11%  Similarity=0.100  Sum_probs=97.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccH---HHHH-hhcchhccccc--ccccc-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSAC---RKLT-KELCDVIEDYS--LVNFS-   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~---~~~~-~~ig~V~Q~~~--l~~~~-   69 (143)
                      +..++|+||||||||||+|+|+|+++|     ++|+|.++|..+    ...+.   ...+ +.++||||++.  +++.. 
T Consensus        35 Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i----~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~  110 (529)
T PRK15134         35 GETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL----LHASEQTLRGVRGNKIAMIFQEPMVSLNPLHT  110 (529)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEec----ccCCHHHHHHHhcCceEEEecCchhhcCchhh
Confidence            467999999999999999999999986     799999999733    22222   2233 46999999964  22110 


Q ss_pred             -------------cCCh-hhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchh
Q 032336           70 -------------TLDI-QDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQS  127 (143)
Q Consensus        70 -------------~~~~-~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~  127 (143)
                                   .... +..+.+.++++.+++.      +..+  +||||||||+|||||+.+|++|++|   ||++.|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllD---EPt~~L  187 (529)
T PRK15134        111 LEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIAD---EPTTAL  187 (529)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEc---CCCCcc
Confidence                         1111 2345678888888773      3333  7999999999999999999999999   999999


Q ss_pred             hhhhhhhc
Q 032336          128 LAEVQEKY  135 (143)
Q Consensus       128 ~~~~~~~~  135 (143)
                      |...++.+
T Consensus       188 D~~~~~~l  195 (529)
T PRK15134        188 DVSVQAQI  195 (529)
T ss_pred             CHHHHHHH
Confidence            99887644

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.95  E-value=3.6e-28  Score=179.82  Aligned_cols=125  Identities=18%  Similarity=0.196  Sum_probs=97.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|+++|..+    .....  .++.++|++|++.+++..+.          
T Consensus        25 Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~----~~~~~--~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~   98 (235)
T cd03299          25 GDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI----TNLPP--EKRDISYVPQNYALFPHMTVYKNIAYGLKK   98 (235)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc----CcCCh--hHcCEEEEeecCccCCCccHHHHHHHHHHH
Confidence            467899999999999999999999999999999999633    22222  24679999999876632111          


Q ss_pred             ---C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         . .+..+.+.++++.+++.   ++.+  +|+||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~gLD~~~~~~l  168 (235)
T cd03299          99 RKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLD---EPFSALDVRTKEKL  168 (235)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEC---CCcccCCHHHHHHH
Confidence               0 11233456677777653   3333  7999999999999999999999999   99999999888744

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.4e-28  Score=197.37  Aligned_cols=127  Identities=12%  Similarity=0.066  Sum_probs=98.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhccccccccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDYSLVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~~l~~~~~----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +..... ..+++.++|+||++.+++..+          
T Consensus        24 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~   99 (491)
T PRK10982         24 HSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE----IDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRY   99 (491)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEE----CCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccc
Confidence            45789999999999999999999999999999999963    322222 334567999999976542110          


Q ss_pred             -C-----Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 -L-----DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 -~-----~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       .     .. +..+.+.++++.+++.   +..+  +||||||||+|||||+.+|++|++|   ||++.+|...++.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD---EPt~~LD~~~~~~l  173 (491)
T PRK10982        100 PTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD---EPTSSLTEKEVNHL  173 (491)
T ss_pred             cccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCCCCCCHHHHHHH
Confidence             0     11 1234567788887763   3333  7999999999999999999999999   99999999887754

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.95  E-value=2e-28  Score=172.14  Aligned_cols=95  Identities=15%  Similarity=0.065  Sum_probs=82.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhcccccccccccCChhhHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDYSLVNFSTLDIQDKESVA   80 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~   80 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..    +...+. ...++.++|++|                   
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~----~~~~~~~~~~~~~i~~~~q-------------------   82 (163)
T cd03216          26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE----VSFASPRDARRAGIAMVYQ-------------------   82 (163)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE----CCcCCHHHHHhcCeEEEEe-------------------
Confidence            46789999999999999999999999999999999963    333333 234567999988                   


Q ss_pred             HHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           81 KLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        81 ~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                                   +|+||+||+++|||++.+|+++++|   ||++.+|...++++
T Consensus        83 -------------LS~G~~qrl~laral~~~p~illlD---EP~~~LD~~~~~~l  121 (163)
T cd03216          83 -------------LSVGERQMVEIARALARNARLLILD---EPTAALTPAEVERL  121 (163)
T ss_pred             -------------cCHHHHHHHHHHHHHhcCCCEEEEE---CCCcCCCHHHHHHH
Confidence                         8999999999999999999999999   99999999887754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.95  E-value=3.1e-28  Score=178.16  Aligned_cols=127  Identities=9%  Similarity=0.068  Sum_probs=91.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc----HHHHHhhcchhcccccccccc-----cC-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA----CRKLTKELCDVIEDYSLVNFS-----TL-   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----~~~~~~~ig~V~Q~~~l~~~~-----~~-   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...+    ....++.++|++|++.++...     .. 
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~  102 (218)
T cd03290          27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKN----ESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFG  102 (218)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcc----cccccccccchhhcceEEEEcCCCccccccHHHHHhhc
Confidence            35789999999999999999999999999999999863    22211    123456799999998765211     00 


Q ss_pred             ChhhHHHHHHHHHHhhhh--------------CC--CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 DIQDKESVAKLVKLIDKS--------------NG--YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ~~~~~~~~~~~l~~l~~~--------------~~--~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .....+...++++.+++.              ..  ..+|+||+|||+||||++.+|+++|+|   ||++.+|...++.+
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD---EPt~~LD~~~~~~l  179 (218)
T cd03290         103 SPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLD---DPFSALDIHLSDHL  179 (218)
T ss_pred             CcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEe---CCccccCHHHHHHH
Confidence            011112233444444321              12  237999999999999999999999999   99999999876643

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3e-28  Score=197.28  Aligned_cols=128  Identities=14%  Similarity=0.056  Sum_probs=99.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc-HHHHHhhcchhccccccccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA-CRKLTKELCDVIEDYSLVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~~~ig~V~Q~~~l~~~~~----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++|..+    ...+ ...+++.++||+|++.+++..+          
T Consensus        30 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i----~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~  105 (501)
T PRK11288         30 GQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM----RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQL  105 (501)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC----CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhccc
Confidence            457899999999999999999999999999999999633    2222 2345677999999976553111          


Q ss_pred             ------CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 ------LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 ------~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                            .. .+..+.+.++++.+++.   +..+  +||||||||+||||++.+|+++++|   ||++.+|...++.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~l~  180 (501)
T PRK11288        106 PHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFD---EPTSSLSAREIEQLF  180 (501)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEc---CCCCCCCHHHHHHHH
Confidence                  01 12234677788888763   3333  7999999999999999999999999   999999998877543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.95  E-value=2.8e-28  Score=215.88  Aligned_cols=128  Identities=16%  Similarity=0.181  Sum_probs=103.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----------------------------------------------------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----------------------------------------------------   28 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----------------------------------------------------   28 (143)
                      +..+||+||||||||||+++|.|+++|                                                     
T Consensus      1194 G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 (1466)
T PTZ00265       1194 KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVF 1273 (1466)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence            467999999999999999999999998                                                     


Q ss_pred             -CCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCC--hhhHHHHHHHHHHhhh-------hC---
Q 032336           29 -IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLD--IQDKESVAKLVKLIDK-------SN---   90 (143)
Q Consensus        29 -~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~--~~~~~~~~~~l~~l~~-------~~---   90 (143)
                       ++|+|.++|.    ++...+.+.+|+.|+||+|++.||.-     ..+.  ....+.++++++..++       .+   
T Consensus      1274 ~~~G~I~idG~----di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~Gyd 1349 (1466)
T PTZ00265       1274 KNSGKILLDGV----DICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYD 1349 (1466)
T ss_pred             CCCCeEEECCE----EHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccC
Confidence             6999999997    66778888999999999999999831     1111  1223456666665432       11   


Q ss_pred             ------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           91 ------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        91 ------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                            +.-+|||||||++|||||+.+|++|+||   |||+.||.++.+.+.
T Consensus      1350 T~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD---EaTSaLD~~sE~~I~ 1398 (1466)
T PTZ00265       1350 TNVGPYGKSLSGGQKQRIAIARALLREPKILLLD---EATSSLDSNSEKLIE 1398 (1466)
T ss_pred             CccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CcccccCHHHHHHHH
Confidence                  2237999999999999999999999999   999999998876543

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.95  E-value=2.4e-28  Score=179.26  Aligned_cols=123  Identities=11%  Similarity=0.024  Sum_probs=95.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +...   . ++.++|+||++.+++..+.          
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~----~~~~---~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~   97 (223)
T TIGR03740        26 NSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP----WTRK---D-LHKIGSLIESPPLYENLTARENLKVHTTL   97 (223)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe----cccc---c-cccEEEEcCCCCccccCCHHHHHHHHHHH
Confidence            46789999999999999999999999999999999963    2211   1 2469999999876532211          


Q ss_pred             ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ...+...+.++++.+++.   +..+  +|+||+||+++|||++.+|+++++|   ||++.+|...++.+
T Consensus        98 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllD---EP~~~LD~~~~~~l  163 (223)
T TIGR03740        98 LGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILD---EPTNGLDPIGIQEL  163 (223)
T ss_pred             cCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCccCCCHHHHHHH
Confidence            011234567778877763   3333  7999999999999999999999999   99999999887744

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.9e-28  Score=182.20  Aligned_cols=129  Identities=15%  Similarity=0.076  Sum_probs=95.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T-   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~-   70 (143)
                      +..++|+||||||||||+++|+|+++     |++|+|.++|..+..  .......+++.++|++|++.+++..     . 
T Consensus        47 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~  124 (268)
T PRK14248         47 HAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD--SNINVVNLRREIGMVFQKPNPFPKSIYNNITH  124 (268)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc--ccccHHHHhccEEEEecCCccCcccHHHHHHH
Confidence            45789999999999999999999864     689999999973321  1122334567899999998765310     0 


Q ss_pred             ---C-C----hhhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           71 ---L-D----IQDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        71 ---~-~----~~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                         . .    ....+.+.++++.+++       .+...  +||||+||++|||||+.+|+++|+|   ||++.+|...++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD---EPt~~LD~~~~~  201 (268)
T PRK14248        125 ALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD---EPASALDPISNA  201 (268)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEc---CCCcccCHHHHH
Confidence               0 0    0112345556665543       22333  7999999999999999999999999   999999998877


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       202 ~l  203 (268)
T PRK14248        202 KI  203 (268)
T ss_pred             HH
Confidence            44

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.95  E-value=4.9e-28  Score=197.73  Aligned_cols=128  Identities=14%  Similarity=0.132  Sum_probs=98.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c-CCh-h
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T-LDI-Q   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~-~~~-~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++||+|++.+|+..     . ... .
T Consensus       344 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~----~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~  419 (544)
T TIGR01842       344 GEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGA----DLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENA  419 (544)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE----ehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCC
Confidence            4679999999999999999999999999999999997    455566677889999999999887311     0 111 1


Q ss_pred             hHHHHHHHHHHhhh-----------h-----CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDK-----------S-----NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-----------~-----~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      +.+.+.++++..++           .     ....+||||+||+++|||+..+|+++++|   ||++.+|....+++.
T Consensus       420 ~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililD---Epts~LD~~~~~~i~  494 (544)
T TIGR01842       420 DPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD---EPNSNLDEEGEQALA  494 (544)
T ss_pred             CHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCccccCHHHHHHHH
Confidence            22333334433221           1     12237999999999999999999999999   999999998877554

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.95  E-value=3.5e-28  Score=181.64  Aligned_cols=116  Identities=14%  Similarity=0.060  Sum_probs=91.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc--------CC-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST--------LD-   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~--------~~-   72 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.+++.               ..++|++|++.+++...        .. 
T Consensus        30 Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~---------------~~i~~v~q~~~~~~~l~~~~~~~~~~~~   94 (251)
T PRK09544         30 GKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK---------------LRIGYVPQKLYLDTTLPLTVNRFLRLRP   94 (251)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc---------------cCEEEeccccccccccChhHHHHHhccc
Confidence            4679999999999999999999999999999988652               24899999876543211        00 


Q ss_pred             hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           73 IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 ~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ....+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus        95 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~l  159 (251)
T PRK09544         95 GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLD---EPTQGVDVNGQVAL  159 (251)
T ss_pred             cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence            11124566777777653   3333  7999999999999999999999999   99999999887754

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.3e-28  Score=179.83  Aligned_cols=128  Identities=12%  Similarity=0.046  Sum_probs=95.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC---ccc--CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF---LSL--IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-----   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~---~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-----   71 (143)
                      +..++|+||||||||||+++|+|+   ++|  ++|+|.++|..+..  ........++.++|+||++.++.. +.     
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~v~q~~~~~~~-tv~~nl~  105 (250)
T PRK14245         29 KSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD--KGVQVDELRKNVGMVFQRPNPFPK-SIFENVA  105 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccc--ccccHHHHhhheEEEecCCccCcc-cHHHHHH
Confidence            467999999999999999999997   454  58999999973321  111234566789999999876531 10     


Q ss_pred             --------C-h-hhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           72 --------D-I-QDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        72 --------~-~-~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                              . . .....+.++++.+++.       +..  .+||||+|||+|||||+.+|+++++|   ||++.+|...+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt~~LD~~~~  182 (250)
T PRK14245        106 YGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMD---EPASALDPIST  182 (250)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHH
Confidence                    0 1 1223466777777642       222  37999999999999999999999999   99999999888


Q ss_pred             hhc
Q 032336          133 EKY  135 (143)
Q Consensus       133 ~~~  135 (143)
                      +.+
T Consensus       183 ~~l  185 (250)
T PRK14245        183 AKV  185 (250)
T ss_pred             HHH
Confidence            754

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.6e-28  Score=181.24  Aligned_cols=129  Identities=9%  Similarity=0.001  Sum_probs=94.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T-   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~-   70 (143)
                      +..++|+||||||||||+++|+|+++     |++|+|.++|..+..  ........++.++|++|++.+++..     . 
T Consensus        36 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~  113 (264)
T PRK14243         36 NQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA--PDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAY  113 (264)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc--cccChHHHhhhEEEEccCCccccccHHHHHHh
Confidence            46799999999999999999999976     479999999963311  1123345667899999997765310     0 


Q ss_pred             ------CChhhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ------LDIQDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ------~~~~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                            ...+..+.+.++++.+++       .+...  +||||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~l  190 (264)
T PRK14243        114 GARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMD---EPCSALDPISTLRI  190 (264)
T ss_pred             hhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHH
Confidence                  011122344455555543       22232  7999999999999999999999999   99999999888744

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.95  E-value=7.2e-28  Score=177.14  Aligned_cols=124  Identities=15%  Similarity=0.069  Sum_probs=94.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc---cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS---LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-------   71 (143)
                      ++.++|+||||||||||+++|+|+++   |++|+|.++|..+    .   ....++.++|+||++.+++..+.       
T Consensus        33 Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~----~---~~~~~~~i~~~~q~~~~~~~~tv~enl~~~  105 (226)
T cd03234          33 GQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR----K---PDQFQKCVAYVRQDDILLPGLTVRETLTYT  105 (226)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC----C---hHHhcccEEEeCCCCccCcCCcHHHHHHHH
Confidence            46789999999999999999999999   9999999999632    2   23456779999999876532110       


Q ss_pred             ------C--h--hhHHHHHH-HHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ------D--I--QDKESVAK-LVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ------~--~--~~~~~~~~-~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                            .  .  .....+.+ .++.+++.   +..+  +|+||+|||++|||++.+|+++++|   ||++.+|...+..+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlD---EP~~gLD~~~~~~~  182 (226)
T cd03234         106 AILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILD---EPTSGLDSFTALNL  182 (226)
T ss_pred             HHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEe---CCCcCCCHHHHHHH
Confidence                  0  0  11112333 56665542   3333  7999999999999999999999999   99999998877644

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.95  E-value=4.8e-28  Score=181.01  Aligned_cols=125  Identities=10%  Similarity=0.080  Sum_probs=94.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc----CCceEEEcceeehhhhccccHHHHHhhcchhccccc-cc-cccc-----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LV-NFST-----   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~-~~~~-----   70 (143)
                      +..++|+||||||||||+++|+|+++|    ++|+|+++|..+    ...  ...++.++||+|++. .+ +..+     
T Consensus        29 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i----~~~--~~~~~~i~~v~q~~~~~~~~~~~~~~~~  102 (254)
T PRK10418         29 GRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV----APC--ALRGRKIATIMQNPRSAFNPLHTMHTHA  102 (254)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeec----ccc--ccccceEEEEecCCccccCccccHHHHH
Confidence            457999999999999999999999999    999999999632    211  122356999999974 22 1110     


Q ss_pred             ------CC-hhhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ------LD-IQDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ------~~-~~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                            .. ....+.+.++++.+++.      +..+  +||||+|||+|||||+.+|++|++|   ||++.+|...++.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD---EPt~~LD~~~~~~l  179 (254)
T PRK10418        103 RETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIAD---EPTTDLDVVAQARI  179 (254)
T ss_pred             HHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEe---CCCcccCHHHHHHH
Confidence                  01 11234567778887753      2333  7999999999999999999999999   99999999876643

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.95  E-value=5.6e-28  Score=182.02  Aligned_cols=130  Identities=12%  Similarity=0.093  Sum_probs=96.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccccc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFST---------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~~---------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+. .........+++.++|++|++.  +++..+         
T Consensus        38 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~-~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~  116 (268)
T PRK10419         38 GETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLA-KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPL  116 (268)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc-ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHH
Confidence            4578999999999999999999999999999999996321 1111122345678999999973  221110         


Q ss_pred             -----CCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 -----LDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 -----~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                           ... +....+.++++.+++.    +...  +|+||+||++|||||+.+|+++|+|   ||++.+|...++.+
T Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLD---EPt~~LD~~~~~~~  190 (268)
T PRK10419        117 RHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILD---EAVSNLDLVLQAGV  190 (268)
T ss_pred             HhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEe---CCCcccCHHHHHHH
Confidence                 011 1223567778777652    2333  7999999999999999999999999   99999999877643

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.3e-28  Score=179.79  Aligned_cols=129  Identities=12%  Similarity=0.058  Sum_probs=94.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+++|     ++|+|.++|..+..  .......+++.++|+||++.++...       
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~  106 (250)
T PRK14262         29 NQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD--PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAF  106 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc--chhhHHHhhhhEEEEecCCccCcccHHHHHHH
Confidence            457899999999999999999999874     89999999963211  1112234567899999998765310       


Q ss_pred             -----cCC-h-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 -----TLD-I-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 -----~~~-~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                           ... . ...+.+.++++.+++       .+..  .+|+||+||++||||++.+|+++++|   ||++.+|...+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllD---EP~~~LD~~~~~  183 (250)
T PRK14262        107 GPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLD---EPTSALDPIATQ  183 (250)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEe---CCccccCHHHHH
Confidence                 000 1 112335556666554       2223  37999999999999999999999999   999999998876


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       184 ~l  185 (250)
T PRK14262        184 RI  185 (250)
T ss_pred             HH
Confidence            43

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.9e-28  Score=179.66  Aligned_cols=129  Identities=15%  Similarity=0.092  Sum_probs=95.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+++     |++|+|.++|..+..  ........++.++|++|++.++...       
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~  107 (251)
T PRK14251         30 KELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG--SKMDLVELRKEVGMVFQQPTPFPFSVYDNVAY  107 (251)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccc--ccchHHHhhccEEEEecCCccCCCcHHHHHHH
Confidence            45789999999999999999999997     479999999973211  1122344567799999998765310       


Q ss_pred             -----cCC-hh-hHHHHHHHHHHhhhh-------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 -----TLD-IQ-DKESVAKLVKLIDKS-------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 -----~~~-~~-~~~~~~~~l~~l~~~-------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                           ... .+ ....+.++++.+++.       +...  +||||+||++||||++.+|+++++|   ||++.+|...++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllD---EP~~~LD~~~~~  184 (251)
T PRK14251        108 GLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLD---EPTSALDPISSS  184 (251)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCCccCCHHHHH
Confidence                 000 11 123456667766651       2333  7999999999999999999999999   999999998876


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       185 ~l  186 (251)
T PRK14251        185 EI  186 (251)
T ss_pred             HH
Confidence            43

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.95  E-value=5.7e-28  Score=198.86  Aligned_cols=128  Identities=19%  Similarity=0.207  Sum_probs=98.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cCC--hh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TLD--IQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~~--~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++||+|++.+|...     ...  ..
T Consensus       361 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~  436 (585)
T TIGR01192       361 GQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI----DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGA  436 (585)
T ss_pred             CCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCE----EhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCC
Confidence            4679999999999999999999999999999999996    455566777889999999999877311     111  11


Q ss_pred             hHHHHHHHHHHhhh----------------hCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDK----------------SNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~----------------~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ..+.+.++++..++                .....+|||||||++|||||+.+|+++++|   ||++.+|..+.+++.
T Consensus       437 ~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililD---Epts~LD~~~~~~i~  511 (585)
T TIGR01192       437 TDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLD---EATSALDVETEARVK  511 (585)
T ss_pred             CHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---CCccCCCHHHHHHHH
Confidence            12233333333211                112337999999999999999999999999   999999998877553

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=7.3e-28  Score=180.39  Aligned_cols=129  Identities=16%  Similarity=0.104  Sum_probs=95.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc--c---CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS--L---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~--~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+++  |   ++|+|.++|..+..  .......+++.++|+||++.+++..       
T Consensus        38 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~  115 (259)
T PRK14274         38 NEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK--GKVDLVELRKNIGMVFQKGNPFPQSIFDNVAY  115 (259)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc--cccCHHHHhhceEEEecCCcccccCHHHHHHh
Confidence            45789999999999999999999987  3   58999999973321  1123345667899999998765310       


Q ss_pred             --c-C---C-hhhHHHHHHHHHHhhhh-------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 --T-L---D-IQDKESVAKLVKLIDKS-------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 --~-~---~-~~~~~~~~~~l~~l~~~-------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                        . .   . .+..+.+.++++.+++.       +...  +||||+|||+||||++.+|+++++|   ||++.+|...++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllD---EPt~~LD~~~~~  192 (259)
T PRK14274        116 GPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMD---EPTSALDPVSTR  192 (259)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHH
Confidence              0 0   1 11123455667766542       2222  7999999999999999999999999   999999998877


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       193 ~l  194 (259)
T PRK14274        193 KI  194 (259)
T ss_pred             HH
Confidence            44

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.95  E-value=4.8e-28  Score=196.10  Aligned_cols=127  Identities=13%  Similarity=0.068  Sum_probs=97.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhcccc---ccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDY---SLVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~---~l~~~~~-------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    ...+. ..+++.++||+|++   .+++..+       
T Consensus       278 Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i----~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~  353 (501)
T PRK10762        278 GEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEV----VTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSL  353 (501)
T ss_pred             CcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEEC----CCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhh
Confidence            467899999999999999999999999999999999633    22222 23556799999985   2321100       


Q ss_pred             ------------CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           71 ------------LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        71 ------------~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                                  .. .+..+.+.++++.+++.    ++.+  +||||||||+||||++.+|+++|+|   ||++.+|...
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLD---EPt~~LD~~~  430 (501)
T PRK10762        354 TALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILD---EPTRGVDVGA  430 (501)
T ss_pred             hhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEc---CCCCCCCHhH
Confidence                        01 12234577888888763    3333  7999999999999999999999999   9999999988


Q ss_pred             hhhc
Q 032336          132 QEKY  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      ++.+
T Consensus       431 ~~~l  434 (501)
T PRK10762        431 KKEI  434 (501)
T ss_pred             HHHH
Confidence            7744

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=7.5e-28  Score=179.36  Aligned_cols=129  Identities=16%  Similarity=0.093  Sum_probs=95.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------   70 (143)
                      ++.++|+||||||||||+++|+|+++|     ++|+|.++|..+..  .......+++.++|++|++.+++...      
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~  106 (250)
T PRK14240         29 NQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK--SDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAY  106 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc--cccchHHHhccEEEEecCCccCcccHHHHHHH
Confidence            457899999999999999999999763     68999999973321  11233456678999999987653100      


Q ss_pred             ------C-C-hhhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           71 ------L-D-IQDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        71 ------~-~-~~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                            . . .+..+.+.++++.+++       .+..  .+||||+|||+||||++.+|+++++|   ||++.+|...++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~  183 (250)
T PRK14240        107 GPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMD---EPTSALDPISTL  183 (250)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHH
Confidence                  0 0 1123445566666543       1333  37999999999999999999999999   999999998876


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      ..
T Consensus       184 ~l  185 (250)
T PRK14240        184 KI  185 (250)
T ss_pred             HH
Confidence            43

>PLN03232 ABC transporter C family member; Provisional

Probab=99.95  E-value=5.1e-28  Score=214.97  Aligned_cols=128  Identities=12%  Similarity=0.062  Sum_probs=104.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-Chhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-DIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~~~~   75 (143)
                      ++++||+||||||||||+++|.|+++|++|+|.++|.    ++...+...+|+++++|||++.+|.-     ..+ ....
T Consensus      1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~----di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~s 1337 (1495)
T PLN03232       1262 SEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDC----DVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHN 1337 (1495)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCE----EhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCC
Confidence            5789999999999999999999999999999999997    66777888999999999999998831     111 1223


Q ss_pred             HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .+.+.++++.+++.                .+.-+|||||||++||||+.++|++|+||   |||+.+|.++...+.
T Consensus      1338 deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILD---EATSaLD~~Te~~Iq 1411 (1495)
T PLN03232       1338 DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLD---EATASVDVRTDSLIQ 1411 (1495)
T ss_pred             HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE---CCcccCCHHHHHHHH
Confidence            44566777665431                12237999999999999999999999999   999999998876543

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=8.2e-28  Score=179.33  Aligned_cols=129  Identities=13%  Similarity=0.063  Sum_probs=95.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccC-----CceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI-----GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+++|+     +|+|.++|..+..  .......+++.++|+||++.+++..       
T Consensus        30 G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~  107 (251)
T PRK14249         30 RQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYS--PNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAF  107 (251)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccc--cccChHHhhceEEEEecCCccCcCcHHHHHhh
Confidence            4578999999999999999999999987     6999999963311  1123345677899999998765320       


Q ss_pred             -----cCC-h-hhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 -----TLD-I-QDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 -----~~~-~-~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                           ... . ...+.+.++++.+++       .+...  +|+||+|||+|||||+.+|+++++|   ||++.+|...++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~  184 (251)
T PRK14249        108 GPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMD---EPCSALDPVSTM  184 (251)
T ss_pred             HHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHH
Confidence                 000 1 112334555555543       22333  7999999999999999999999999   999999988877


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       185 ~l  186 (251)
T PRK14249        185 RI  186 (251)
T ss_pred             HH
Confidence            43

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.95  E-value=5.6e-28  Score=179.72  Aligned_cols=128  Identities=10%  Similarity=0.035  Sum_probs=94.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc--ccCCceEEEcceeehhhhccccHHHH-Hhhcchhccccccccccc--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL--SLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFST--------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~--------   70 (143)
                      +..++|+||||||||||+++|+|++  +|++|+|.++|.    ++...+.... ++.++|++|++.+++..+        
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~----~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~  102 (248)
T PRK09580         27 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGK----DLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA  102 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCC----ccccCCHHHHhhcceEEEecCchhccchhHHHHHHHh
Confidence            4578999999999999999999995  699999999996    3333333333 356999999976432100        


Q ss_pred             ------CCh-------hhHHHHHHHHHHhhhh----CC---CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           71 ------LDI-------QDKESVAKLVKLIDKS----NG---YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        71 ------~~~-------~~~~~~~~~l~~l~~~----~~---~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                            ...       +..+.+.++++.+++.    +.   ..+||||+|||+||||++++|+++++|   ||++.+|..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLD---EPt~~LD~~  179 (248)
T PRK09580        103 LNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD---ESDSGLDID  179 (248)
T ss_pred             hhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEe---CCCccCCHH
Confidence                  000       0123445566665552    22   248999999999999999999999999   999999998


Q ss_pred             hhhhcc
Q 032336          131 VQEKYI  136 (143)
Q Consensus       131 ~~~~~~  136 (143)
                      .++.+.
T Consensus       180 ~~~~l~  185 (248)
T PRK09580        180 ALKIVA  185 (248)
T ss_pred             HHHHHH
Confidence            877543

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.1e-28  Score=200.90  Aligned_cols=131  Identities=12%  Similarity=0.142  Sum_probs=98.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehh------hhccccH---HHHH-hhcchhcccc--cccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQ------AVHNSAC---RKLT-KELCDVIEDY--SLVNFS   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~------~~~~~~~---~~~~-~~ig~V~Q~~--~l~~~~   69 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+..      .+.....   ..++ +.|+||+|++  .+++..
T Consensus        42 Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~  121 (623)
T PRK10261         42 GETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVF  121 (623)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCC
Confidence            46799999999999999999999999999999998853210      1111121   2233 4699999987  343211


Q ss_pred             c--------------CCh-hhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccch
Q 032336           70 T--------------LDI-QDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQ  126 (143)
Q Consensus        70 ~--------------~~~-~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~  126 (143)
                      +              ... +..+++.++++.+++.      +.++  +||||||||+|||||+.+|++||+|   |||+.
T Consensus       122 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllD---EPt~~  198 (623)
T PRK10261        122 TVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIAD---EPTTA  198 (623)
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEe---CCCCc
Confidence            1              111 2235677888888873      3444  7999999999999999999999999   99999


Q ss_pred             hhhhhhhhc
Q 032336          127 SLAEVQEKY  135 (143)
Q Consensus       127 ~~~~~~~~~  135 (143)
                      ||...+..+
T Consensus       199 LD~~~~~~l  207 (623)
T PRK10261        199 LDVTIQAQI  207 (623)
T ss_pred             cCHHHHHHH
Confidence            999987754

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.95  E-value=4.5e-28  Score=174.70  Aligned_cols=114  Identities=15%  Similarity=0.069  Sum_probs=89.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc--ccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL--SLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESV   79 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~   79 (143)
                      ++.++|+||||||||||+++|+|++  +|++|+|.++|..+    ..   ...++.++|++|++.+++..+.. ++   +
T Consensus        35 Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~----~~---~~~~~~i~~~~q~~~~~~~~t~~-~~---i  103 (194)
T cd03213          35 GELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL----DK---RSFRKIIGYVPQDDILHPTLTVR-ET---L  103 (194)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeC----ch---HhhhheEEEccCcccCCCCCcHH-HH---H
Confidence            4578999999999999999999999  99999999999632    21   24567799999998765433221 11   1


Q ss_pred             HHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           80 AKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        80 ~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .- ...+     ..+|+||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       104 ~~-~~~~-----~~LS~G~~qrv~laral~~~p~illlD---EP~~~LD~~~~~~l  150 (194)
T cd03213         104 MF-AAKL-----RGLSGGERKRVSIALELVSNPSLLFLD---EPTSGLDSSSALQV  150 (194)
T ss_pred             HH-HHHh-----ccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCcCCCHHHHHHH
Confidence            10 0011     168999999999999999999999999   99999999887754

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.95  E-value=8.7e-28  Score=205.30  Aligned_cols=124  Identities=19%  Similarity=0.218  Sum_probs=101.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCC--hh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLD--IQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~--~~   74 (143)
                      +.++||||||||||||++.+|-++|.|++|.|.+||.    ++.+.+.+.+|+++|.|.|+|.||..     ..+.  .-
T Consensus      1016 GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~----dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~v 1091 (1228)
T KOG0055|consen 1016 GQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGV----DIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEV 1091 (1228)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCc----ccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCC
Confidence            5789999999999999999999999999999999996    77889999999999999999999832     1111  12


Q ss_pred             hHHHHHHHHHHhhh-------hCCC---------cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           75 DKESVAKLVKLIDK-------SNGY---------IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-------~~~~---------~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                      ..+.+.++++..+.       .++|         -+|||||||++||||+..+|++||||   |.|+-||-+..
T Consensus      1092 s~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLD---EATSALDseSE 1162 (1228)
T KOG0055|consen 1092 SEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLD---EATSALDSESE 1162 (1228)
T ss_pred             CHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeee---ccchhhhhhhH
Confidence            33455556555432       2222         27999999999999999999999999   99999987643

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.95  E-value=9.4e-28  Score=179.72  Aligned_cols=127  Identities=12%  Similarity=0.099  Sum_probs=94.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cCC-hhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TLD-IQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~~-~~~   75 (143)
                      +..++|+|+||||||||+++|+|+++|++|+|.++|.    ++...+....++.++|++|++.++...     ... ...
T Consensus        47 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~----~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~  122 (257)
T cd03288          47 GQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGI----DISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCT  122 (257)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCE----EhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCC
Confidence            4578999999999999999999999999999999996    333344456678899999998765311     011 001


Q ss_pred             HHHHHHHHHHhhh-----------h-----CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           76 KESVAKLVKLIDK-----------S-----NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        76 ~~~~~~~l~~l~~-----------~-----~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ...+.++++.+++           .     ....+|+||+||+++|||++.+|+++++|   ||++.+|...++.+
T Consensus       123 ~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~gLD~~~~~~l  195 (257)
T cd03288         123 DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMD---EATASIDMATENIL  195 (257)
T ss_pred             HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHH
Confidence            1223333333221           1     11237999999999999999999999999   99999999887644

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=178.60  Aligned_cols=129  Identities=15%  Similarity=0.081  Sum_probs=96.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+.+|     ++|+|.++|..+..  ........++.++|+||++.+++..       
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~  107 (251)
T PRK14270         30 NKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD--KDVDVVELRKRVGMVFQKPNPFPMSIYDNVAY  107 (251)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc--ccccHHHHHhheEEEecCCCcCCCcHHHHHHh
Confidence            467899999999999999999999875     78999999973321  1122345567899999998765310       


Q ss_pred             -----cC-Ch-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 -----TL-DI-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 -----~~-~~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                           .. .. +....+.++++.+++       .+..  .+|+||+|||+||||++.+|+++++|   ||++.+|...+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~  184 (251)
T PRK14270        108 GPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMD---EPTSALDPISTL  184 (251)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHH
Confidence                 00 11 112345667777653       2222  37999999999999999999999999   999999998876


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       185 ~l  186 (251)
T PRK14270        185 KI  186 (251)
T ss_pred             HH
Confidence            43

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.95  E-value=8.9e-28  Score=177.34  Aligned_cols=125  Identities=19%  Similarity=0.160  Sum_probs=96.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..+    .....  .++.++|++|++.++...+.          
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~----~~~~~--~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~   99 (232)
T cd03300          26 GEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI----TNLPP--HKRPVNTVFQNYALFPHLTVFENIAFGLRL   99 (232)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc----CcCCh--hhcceEEEecccccCCCCcHHHHHHHHHHh
Confidence            467999999999999999999999999999999999633    22221  24679999999876632111          


Q ss_pred             ---Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         .. ...+.+.++++.+++.   +..+  +|+||+|||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD---EP~~gLD~~~~~~l  169 (232)
T cd03300         100 KKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD---EPLGALDLKLRKDM  169 (232)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence               11 1233556677777663   3333  7999999999999999999999999   99999999888754

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.95  E-value=7.4e-28  Score=173.56  Aligned_cols=122  Identities=12%  Similarity=0.052  Sum_probs=92.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD---------   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~---------   72 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|.    ++....    ++.++|++|++.++...+..         
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~----~i~~~~----~~~~~~~~~~~~~~~~~tv~~~l~~~~~~   97 (195)
T PRK13541         26 SAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNC----NINNIA----KPYCTYIGHNLGLKLEMTVFENLKFWSEI   97 (195)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCc----ccChhh----hhhEEeccCCcCCCccCCHHHHHHHHHHh
Confidence            4678999999999999999999999999999999996    222211    24589999986543221110         


Q ss_pred             hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           73 IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        73 ~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      ....+.+.++++.+++.   +...  +|+||+||+++|||++.+|+++++|   ||++.+|...++.
T Consensus        98 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllD---EP~~~LD~~~~~~  161 (195)
T PRK13541         98 YNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLD---EVETNLSKENRDL  161 (195)
T ss_pred             cccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHH
Confidence            01223556667776652   3333  7999999999999999999999999   9999999888764

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=178.51  Aligned_cols=129  Identities=17%  Similarity=0.092  Sum_probs=94.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc--cc---CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL--SL---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      ++.++|+||||||||||+++|+|+.  +|   ++|+|.++|..+..  .......+++.++|+||++.+++..       
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~  108 (252)
T PRK14239         31 NEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS--PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVY  108 (252)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC--cccchHhhhhcEEEEecCCccCcCcHHHHHHH
Confidence            4679999999999999999999985  36   58999999963311  0112334567899999998765310       


Q ss_pred             -----cCC-h-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 -----TLD-I-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 -----~~~-~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                           ... . ...+.+.++++.+++       .+..  .+|+||+|||+||||++.+|+++++|   ||++.+|....+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~  185 (252)
T PRK14239        109 GLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLD---EPTSALDPISAG  185 (252)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCccccCHHHHH
Confidence                 001 1 112345556666653       2233  37999999999999999999999999   999999998877


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       186 ~l  187 (252)
T PRK14239        186 KI  187 (252)
T ss_pred             HH
Confidence            54

>PLN03130 ABC transporter C family member; Provisional

Probab=99.95  E-value=7.5e-28  Score=214.67  Aligned_cols=128  Identities=11%  Similarity=0.055  Sum_probs=105.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----cc-CChhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----ST-LDIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~-~~~~~   75 (143)
                      ++++||+|+||||||||+++|.|+++|++|+|.++|.    ++...+...+|+++++|||++.+|.-     .. .....
T Consensus      1265 GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~----dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~t 1340 (1622)
T PLN03130       1265 SEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGC----DISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHN 1340 (1622)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCE----ecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCC
Confidence            5789999999999999999999999999999999997    66778889999999999999998831     11 11223


Q ss_pred             HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .+.+.++++.+++.                .+.-+|||||||++|||||..+|++|+||   |||+.+|.++...+.
T Consensus      1341 deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILD---EATSaLD~~Te~~Iq 1414 (1622)
T PLN03130       1341 DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLD---EATAAVDVRTDALIQ 1414 (1622)
T ss_pred             HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEE---CCCCCCCHHHHHHHH
Confidence            45567777765431                12237999999999999999999999999   999999998876543

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.95  E-value=5.8e-28  Score=195.63  Aligned_cols=128  Identities=6%  Similarity=0.028  Sum_probs=98.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc-HHHHHhhcchhccccc---cccccc------C
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA-CRKLTKELCDVIEDYS---LVNFST------L   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~~~ig~V~Q~~~---l~~~~~------~   71 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|+++|+.+    .... ....++.++|++|++.   +++..+      .
T Consensus       279 Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~----~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~  354 (501)
T PRK11288        279 GEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI----DIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINI  354 (501)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEEC----CCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc
Confidence            467999999999999999999999999999999999632    2222 2345567999999863   332110      0


Q ss_pred             -------------C-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           72 -------------D-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        72 -------------~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                                   . ....+.+.++++.+++.    +..+  +||||||||+||||++.+|++||+|   |||+.+|...
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLD---EPt~~LD~~~  431 (501)
T PRK11288        355 SARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLD---EPTRGIDVGA  431 (501)
T ss_pred             ccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEc---CCCCCCCHhH
Confidence                         0 11234567788888762    3333  7999999999999999999999999   9999999998


Q ss_pred             hhhcc
Q 032336          132 QEKYI  136 (143)
Q Consensus       132 ~~~~~  136 (143)
                      ++.++
T Consensus       432 ~~~l~  436 (501)
T PRK11288        432 KHEIY  436 (501)
T ss_pred             HHHHH
Confidence            87554

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=178.64  Aligned_cols=129  Identities=11%  Similarity=0.055  Sum_probs=96.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc--c---CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS--L---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~--~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------   70 (143)
                      +..++|+||||||||||+++|+|+++  |   ++|+|.++|..+..  .......+++.++|+||++.+++..+      
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~--~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~  107 (252)
T PRK14256         30 NSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD--RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVI  107 (252)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc--ccCChHHhhccEEEEecCCCCCCcCcHHHHHH
Confidence            45789999999999999999999986  4   68999999973311  11223356678999999987653211      


Q ss_pred             --------CCh-hhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           71 --------LDI-QDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        71 --------~~~-~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                              ... +..+.+.++++.+++.       +..  .+|+||+|||+||||++.+|+++++|   ||++.+|...+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EP~~gLD~~~~  184 (252)
T PRK14256        108 AGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMD---EPASALDPIST  184 (252)
T ss_pred             hHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHH
Confidence                    011 1124466677776642       222  37999999999999999999999999   99999999887


Q ss_pred             hhc
Q 032336          133 EKY  135 (143)
Q Consensus       133 ~~~  135 (143)
                      +.+
T Consensus       185 ~~l  187 (252)
T PRK14256        185 LKI  187 (252)
T ss_pred             HHH
Confidence            643

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.2e-27  Score=180.06  Aligned_cols=129  Identities=15%  Similarity=0.079  Sum_probs=95.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+++     |++|+|.++|..+..  .......+++.++|+||++.+++..       
T Consensus        46 Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~  123 (267)
T PRK14237         46 NKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR--KEINVYEMRKHIGMVFQRPNPFAKSIYENITF  123 (267)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccc--ccCChHHHhcceEEEecCCccccccHHHHHHh
Confidence            45789999999999999999999986     589999999963311  1122345677899999998765310       


Q ss_pred             ---c--C-Ch-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 ---T--L-DI-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 ---~--~-~~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                         .  . .. +..+.+.++++.+++       .+..  .+|+||+||++||||++.+|+++++|   ||++.+|...++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---EPt~~LD~~~~~  200 (267)
T PRK14237        124 ALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMD---EPASALDPISTM  200 (267)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHH
Confidence               0  0 11 112345566666654       1222  37999999999999999999999999   999999998876


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       201 ~l  202 (267)
T PRK14237        201 QL  202 (267)
T ss_pred             HH
Confidence            44

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.2e-27  Score=179.66  Aligned_cols=130  Identities=9%  Similarity=-0.020  Sum_probs=97.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------   70 (143)
                      +..++|+||||||||||+++|+|+++|     ++|+|.++|..+..  .......+++.++|+||++.++....      
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~  111 (261)
T PRK14263         34 NEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG--KGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAF  111 (261)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc--cccchHhhhhceEEEecCCccccccHHHHHHH
Confidence            467999999999999999999999986     79999999973310  11122345677999999987652110      


Q ss_pred             ------CChhhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 ------LDIQDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ------~~~~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                            ...+..+.+.++++.+++.       +..  .+|+||+||++||||++.+|+++++|   ||++.+|...++.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPtsgLD~~~~~~l  188 (261)
T PRK14263        112 GLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD---EPCSALDPIATRRV  188 (261)
T ss_pred             HHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCccCCHHHHHHH
Confidence                  0112234566777776642       122  37999999999999999999999999   99999999887754


Q ss_pred             c
Q 032336          136 I  136 (143)
Q Consensus       136 ~  136 (143)
                      .
T Consensus       189 ~  189 (261)
T PRK14263        189 E  189 (261)
T ss_pred             H
Confidence            3

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.95  E-value=7.3e-28  Score=195.78  Aligned_cols=131  Identities=11%  Similarity=0.087  Sum_probs=97.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEc-ceeehhhhcccc---HHHHHhhcchhccccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCS-NVFYLQAVHNSA---CRKLTKELCDVIEDYSLVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~-g~~~~~~~~~~~---~~~~~~~ig~V~Q~~~l~~~~~-------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++ |.... ++....   ...+++.++|+||++.+++..+       
T Consensus       310 Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~-~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~  388 (520)
T TIGR03269       310 GEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWV-DMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTE  388 (520)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccc-cccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHH
Confidence            45789999999999999999999999999999995 52100 111111   1234567999999977653211       


Q ss_pred             -----CCh-hhHHHHHHHHHHhhhh--------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           71 -----LDI-QDKESVAKLVKLIDKS--------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        71 -----~~~-~~~~~~~~~l~~l~~~--------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                           ... ...+.+.++++.+++.        +.++  +||||||||+|||||+.+|++||+|   ||++.+|...++.
T Consensus       389 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllD---EPt~~LD~~~~~~  465 (520)
T TIGR03269       389 AIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILD---EPTGTMDPITKVD  465 (520)
T ss_pred             HHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHH
Confidence                 111 1234567788888773        2333  7999999999999999999999999   9999999988875


Q ss_pred             cc
Q 032336          135 YI  136 (143)
Q Consensus       135 ~~  136 (143)
                      +.
T Consensus       466 l~  467 (520)
T TIGR03269       466 VT  467 (520)
T ss_pred             HH
Confidence            44

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.4e-27  Score=178.92  Aligned_cols=128  Identities=13%  Similarity=0.051  Sum_probs=96.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-----   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-----   71 (143)
                      +..++|+|+||||||||+++|+|+++|     ++|+|.++|..+..  .......+++.++|++|++.+++ .+.     
T Consensus        33 Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~  109 (259)
T PRK14260         33 NKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD--PRININRLRRQIGMVFQRPNPFP-MSIYENVA  109 (259)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc--cccchHhhhhheEEEecccccCC-ccHHHHHH
Confidence            467999999999999999999999985     48999999963311  11233456678999999987663 110     


Q ss_pred             ---------C-hhhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           72 ---------D-IQDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        72 ---------~-~~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                               . .+..+.+.++++.+++       .+..  .+|+||+|||+||||++.+|+++++|   ||++.+|...+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt~~LD~~~~  186 (259)
T PRK14260        110 YGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMD---EPCSALDPIAT  186 (259)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHH
Confidence                     1 1122345566666653       2233  37999999999999999999999999   99999999887


Q ss_pred             hhc
Q 032336          133 EKY  135 (143)
Q Consensus       133 ~~~  135 (143)
                      +.+
T Consensus       187 ~~l  189 (259)
T PRK14260        187 MKV  189 (259)
T ss_pred             HHH
Confidence            744

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.95  E-value=1e-27  Score=194.61  Aligned_cols=127  Identities=11%  Similarity=0.057  Sum_probs=96.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH-HHHhhcchhcccc---ccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR-KLTKELCDVIEDY---SLVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~V~Q~~---~l~~~~~-------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..    +...+.. ..++.++|+||++   .+++..+       
T Consensus       289 Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~----i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~  364 (510)
T PRK15439        289 GEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKE----INALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCA  364 (510)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEE----CCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHh
Confidence            45789999999999999999999999999999999963    3223332 2445799999974   2332110       


Q ss_pred             -------C---ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           71 -------L---DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        71 -------~---~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                             .   .....+.++++++.+++.    +..+  +||||||||+||||++.+|++||+|   ||++.+|...++.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLD---EPt~gLD~~~~~~  441 (510)
T PRK15439        365 LTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVD---EPTRGVDVSARND  441 (510)
T ss_pred             hhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEEC---CCCcCcChhHHHH
Confidence                   0   111234567888888763    3333  7999999999999999999999999   9999999988874


Q ss_pred             c
Q 032336          135 Y  135 (143)
Q Consensus       135 ~  135 (143)
                      +
T Consensus       442 l  442 (510)
T PRK15439        442 I  442 (510)
T ss_pred             H
Confidence            4

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.7e-27  Score=179.93  Aligned_cols=128  Identities=12%  Similarity=0.031  Sum_probs=94.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-----   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-----   71 (143)
                      ++.++|+||||||||||+++|+|+++|     ++|+|.++|..+..  .......+++.++|+||++.+++. ++     
T Consensus        46 Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~--~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~  122 (274)
T PRK14265         46 KKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD--SQINSVKLRRQVGMVFQRPNPFPK-SIYENIA  122 (274)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc--ccchhHHHhhcEEEEccCCccccc-cHHHHHH
Confidence            467899999999999999999999863     68999999963211  112223456789999999876531 10     


Q ss_pred             --------ChhhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           72 --------DIQDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        72 --------~~~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                              .....+.+.++++.+++       .+..+  +||||+|||+|||||+.+|+++|+|   ||++.+|...++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD---EPt~~LD~~~~~~  199 (274)
T PRK14265        123 FAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMD---EPCSALDPISTRQ  199 (274)
T ss_pred             hHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEe---CCcccCCHHHHHH
Confidence                    01112234455555543       23333  7999999999999999999999999   9999999988874


Q ss_pred             c
Q 032336          135 Y  135 (143)
Q Consensus       135 ~  135 (143)
                      +
T Consensus       200 l  200 (274)
T PRK14265        200 V  200 (274)
T ss_pred             H
Confidence            4

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.4e-27  Score=181.37  Aligned_cols=129  Identities=13%  Similarity=0.087  Sum_probs=94.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+.+     |++|+|.++|..+..  .......+++.++|++|++.+++..       
T Consensus        65 Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~  142 (286)
T PRK14275         65 KYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG--KFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAY  142 (286)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh--cccchHHhhhcEEEECCCCCCCccCHHHHHHh
Confidence            46789999999999999999999864     499999999963211  0112234567899999998765310       


Q ss_pred             -----cCC-h-hhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 -----TLD-I-QDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 -----~~~-~-~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                           ... . ...+.+.++++.+++       .+...  +||||+|||+|||||+.+|+++++|   ||++.+|...++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD---EPt~gLD~~~~~  219 (286)
T PRK14275        143 GPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLD---EPTSALDPKATA  219 (286)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHH
Confidence                 011 1 112345566666653       12332  7999999999999999999999999   999999998877


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       220 ~l  221 (286)
T PRK14275        220 KI  221 (286)
T ss_pred             HH
Confidence            54

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.4e-27  Score=178.15  Aligned_cols=129  Identities=12%  Similarity=0.044  Sum_probs=95.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+.+     |++|+|.++|..+. . .......+++.++|+||++.+++..       
T Consensus        31 Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~-~-~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~  108 (251)
T PRK14244         31 REVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY-S-VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAY  108 (251)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH-h-cccchHHHhhhEEEEecCcccccCCHHHHHHH
Confidence            45789999999999999999999986     47999999996321 1 1112234567899999998765310       


Q ss_pred             -----cC--C-hhhHHHHHHHHHHhhhhC-------CC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           70 -----TL--D-IQDKESVAKLVKLIDKSN-------GY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        70 -----~~--~-~~~~~~~~~~l~~l~~~~-------~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                           ..  . .+..+.+.++++.+++..       ..  .+||||+|||+||||++.+|+++++|   ||++.+|....
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD---EPt~~LD~~~~  185 (251)
T PRK14244        109 GPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMD---EPCSALDPVAT  185 (251)
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHH
Confidence                 00  0 112234566777776521       22  27999999999999999999999999   99999999887


Q ss_pred             hhc
Q 032336          133 EKY  135 (143)
Q Consensus       133 ~~~  135 (143)
                      +.+
T Consensus       186 ~~l  188 (251)
T PRK14244        186 NVI  188 (251)
T ss_pred             HHH
Confidence            744

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.95  E-value=8.4e-28  Score=179.17  Aligned_cols=115  Identities=13%  Similarity=0.022  Sum_probs=88.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD---------   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~---------   72 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|.                .++|++|++..+...+..         
T Consensus        25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~----------------~i~~~~q~~~~~~~~tv~e~l~~~~~~   88 (246)
T cd03237          25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD----------------TVSYKPQYIKADYEGTVRDLLSSITKD   88 (246)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc----------------eEEEecccccCCCCCCHHHHHHHHhhh
Confidence            4578999999999999999999999999999998872                378888876532111110         


Q ss_pred             -hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           73 -IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 -~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       ......+.++++.+++.   +..+  +||||+|||+||+||+.+|+++++|   ||++.||...++.+
T Consensus        89 ~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllD---EPt~~LD~~~~~~l  154 (246)
T cd03237          89 FYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLD---EPSAYLDVEQRLMA  154 (246)
T ss_pred             ccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence             01112345677777653   3333  7999999999999999999999999   99999999887743

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.3e-27  Score=176.93  Aligned_cols=125  Identities=17%  Similarity=0.156  Sum_probs=97.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|..+    ....  ..++.++|+||++.+++..+.          
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~----~~~~--~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~   99 (237)
T TIGR00968        26 GSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDA----TRVH--ARDRKIGFVFQHYALFKHLTVRDNIAFGLEI   99 (237)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc----CcCC--hhhcCEEEEecChhhccCCcHHHHHHhHHHh
Confidence            457899999999999999999999999999999999632    2222  235679999999876632110          


Q ss_pred             ---C-hhhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---D-IQDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~-~~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         . ....+.+.++++.+++.   +..  .+|+||+||++||||++.+|+++++|   ||++.+|...++.+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD---EP~~~LD~~~~~~~  169 (237)
T TIGR00968       100 RKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLD---EPFGALDAKVRKEL  169 (237)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence               1 11234556777777653   333  37999999999999999999999999   99999999888754

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.5e-27  Score=193.19  Aligned_cols=127  Identities=14%  Similarity=0.063  Sum_probs=97.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc--CCceEEEcceeehhhhccccHHH-HHhhcchhccccccccccc--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL--IGSNICCSNVFYLQAVHNSACRK-LTKELCDVIEDYSLVNFST--------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~-~~~~ig~V~Q~~~l~~~~~--------   70 (143)
                      +..++|+||||||||||+++|+|+++|  ++|+|.++|..    +...+... .++.++||||++.+++..+        
T Consensus        27 Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~  102 (500)
T TIGR02633        27 GECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSP----LKASNIRDTERAGIVIIHQELTLVPELSVAENIFLG  102 (500)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE----CCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhh
Confidence            467999999999999999999999987  79999999963    33333332 3467999999976542110        


Q ss_pred             ---------CC-hhhHHHHHHHHHHhhhhC----CCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           71 ---------LD-IQDKESVAKLVKLIDKSN----GYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        71 ---------~~-~~~~~~~~~~l~~l~~~~----~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                               .. .+..+.+.++++.+++..    ..+  +||||||||+|||||+.+|+++++|   ||++.+|....+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLD---EPt~~LD~~~~~~  179 (500)
T TIGR02633       103 NEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILD---EPSSSLTEKETEI  179 (500)
T ss_pred             ccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEe---CCCCCCCHHHHHH
Confidence                     01 122345777888887642    222  7999999999999999999999999   9999999988775


Q ss_pred             c
Q 032336          135 Y  135 (143)
Q Consensus       135 ~  135 (143)
                      +
T Consensus       180 l  180 (500)
T TIGR02633       180 L  180 (500)
T ss_pred             H
Confidence            4

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.2e-27  Score=176.77  Aligned_cols=128  Identities=14%  Similarity=0.061  Sum_probs=94.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+++|     ++|+|.++|..+.   .......+++.++|+||++.+++..       
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~---~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~  105 (249)
T PRK14253         29 RQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY---GNIDVADLRIKVGMVFQKPNPFPMSIYENVAY  105 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcc---cccchHHHHhheeEEecCCCcCcccHHHHHHh
Confidence            457899999999999999999999986     5999999996321   1223445677899999998765310       


Q ss_pred             -----cCC-h-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 -----TLD-I-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 -----~~~-~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                           ... . ...+.+.++++.+++       .+..  .+||||+|||+||||++.+|+++++|   ||++.+|...++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~  182 (249)
T PRK14253        106 GLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMD---EPTSALDPIATH  182 (249)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCccCCHHHHH
Confidence                 000 1 112334555655543       1222  37999999999999999999999999   999999998876


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       183 ~l  184 (249)
T PRK14253        183 KI  184 (249)
T ss_pred             HH
Confidence            43

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.5e-27  Score=176.64  Aligned_cols=129  Identities=11%  Similarity=0.044  Sum_probs=93.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccC-----CceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI-----GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-----   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-----   71 (143)
                      +..++|+||||||||||+++|+|+++|+     +|+|.++|..+..  .......+++.++|++|++.+++..+.     
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~  107 (252)
T PRK14272         30 GTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG--PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV  107 (252)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEccc--CccCHHHhhceeEEEeccCccCcCCCHHHHHH
Confidence            3578999999999999999999999874     8999999963311  112233556779999999876532110     


Q ss_pred             ---------Ch-hhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           72 ---------DI-QDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        72 ---------~~-~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                               .. +..+.+.++++.+++       .+..+  +||||+|||+||||++.+|+++++|   ||++.+|...+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~  184 (252)
T PRK14272        108 AGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMD---EPTSALDPAST  184 (252)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHH
Confidence                     01 112233444444432       12333  7999999999999999999999999   99999999887


Q ss_pred             hhc
Q 032336          133 EKY  135 (143)
Q Consensus       133 ~~~  135 (143)
                      +.+
T Consensus       185 ~~l  187 (252)
T PRK14272        185 ARI  187 (252)
T ss_pred             HHH
Confidence            744

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.95  E-value=1.2e-27  Score=189.21  Aligned_cols=122  Identities=15%  Similarity=0.134  Sum_probs=98.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc------ccCC-hh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF------STLD-IQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~------~~~~-~~   74 (143)
                      +..++||||||||||||.|+|.|..+|.+|.|++||.    ++..|+.+.+.++|||+||+..||+-      -.+. +.
T Consensus       362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga----~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~  437 (580)
T COG4618         362 GEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA----DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEA  437 (580)
T ss_pred             CceEEEECCCCccHHHHHHHHHcccccCCCcEEecch----hhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccC
Confidence            5689999999999999999999999999999999996    77889999999999999999999831      1112 23


Q ss_pred             hHHHHHHHHHHhh-------hhC---------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           75 DKESVAKLVKLID-------KSN---------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        75 ~~~~~~~~l~~l~-------~~~---------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                      +.+.+.++.+..+       +.+         ...+|||||||+++|||+-.+|.+++||   ||-++||.+
T Consensus       438 d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLD---EPNsNLD~~  506 (580)
T COG4618         438 DPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLD---EPNSNLDSE  506 (580)
T ss_pred             CHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEec---CCCCCcchh
Confidence            3344444433322       122         2237999999999999999999999999   999999864

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.95  E-value=2e-27  Score=192.46  Aligned_cols=127  Identities=11%  Similarity=0.022  Sum_probs=97.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-CCceEEEcceeehhhhccc-cHHHHHhhcchhcccc---cccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-IGSNICCSNVFYLQAVHNS-ACRKLTKELCDVIEDY---SLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-~~G~i~~~g~~~~~~~~~~-~~~~~~~~ig~V~Q~~---~l~~~~-------   69 (143)
                      +..++|+||||||||||||+|+|+++| ++|+|.++|..+    ... ....+++.++||+|++   .+++..       
T Consensus       286 Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~----~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~  361 (500)
T TIGR02633       286 GEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV----DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT  361 (500)
T ss_pred             CcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEEC----CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhc
Confidence            467999999999999999999999985 899999999633    211 2234567899999995   233210       


Q ss_pred             --c---C------C-hhhHHHHHHHHHHhhhh----CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           70 --T---L------D-IQDKESVAKLVKLIDKS----NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        70 --~---~------~-~~~~~~~~~~l~~l~~~----~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                        .   .      . ....+.+.++++.+++.    +..  .+||||||||+||||++.+|++|++|   ||++.+|...
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD---EPt~~LD~~~  438 (500)
T TIGR02633       362 LSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILD---EPTRGVDVGA  438 (500)
T ss_pred             chhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEc---CCCCCcCHhH
Confidence              0   0      1 11234577888888774    223  27999999999999999999999999   9999999998


Q ss_pred             hhhc
Q 032336          132 QEKY  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      ++.+
T Consensus       439 ~~~l  442 (500)
T TIGR02633       439 KYEI  442 (500)
T ss_pred             HHHH
Confidence            8754

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.2e-27  Score=179.50  Aligned_cols=127  Identities=11%  Similarity=0.063  Sum_probs=95.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccc-cHHHHHhhcchhcccccccccc-----c
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNS-ACRKLTKELCDVIEDYSLVNFS-----T   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~-~~~~~~~~ig~V~Q~~~l~~~~-----~   70 (143)
                      ++.++|+||||||||||+++|+|+++|     ++|+|.++|..+    ... ....+++.++|++|++.+|+..     .
T Consensus        47 Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i----~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~  122 (276)
T PRK14271         47 RAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI----FNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVL  122 (276)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEc----cccchhHHHhhheEEeccCCccCCccHHHHHH
Confidence            467999999999999999999999985     699999999632    222 2235667899999998765310     0


Q ss_pred             --------CCh-hhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           71 --------LDI-QDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        71 --------~~~-~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                              ... +....+.++++.+++.       +..  .+||||+|||+||||++.+|+++++|   ||++.+|...+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLD---EPt~~LD~~~~  199 (276)
T PRK14271        123 AGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLD---EPTSALDPTTT  199 (276)
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHH
Confidence                    011 1122345566666552       222  37999999999999999999999999   99999999887


Q ss_pred             hhc
Q 032336          133 EKY  135 (143)
Q Consensus       133 ~~~  135 (143)
                      +++
T Consensus       200 ~~l  202 (276)
T PRK14271        200 EKI  202 (276)
T ss_pred             HHH
Confidence            744

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.94  E-value=1.4e-27  Score=171.86  Aligned_cols=114  Identities=10%  Similarity=0.010  Sum_probs=88.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc--ccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL--SLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESV   79 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~   79 (143)
                      +..++|+||||||||||+++|+|+.  +|++|+|.++|..    +.    ..+++.++|++|++.+++..+.. +... .
T Consensus        33 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~----~~----~~~~~~i~~~~q~~~~~~~~tv~-~~l~-~  102 (192)
T cd03232          33 GTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRP----LD----KNFQRSTGYVEQQDVHSPNLTVR-EALR-F  102 (192)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEe----hH----HHhhhceEEecccCccccCCcHH-HHHH-H
Confidence            4578999999999999999999986  4899999999963    22    34566799999988765432221 1111 0


Q ss_pred             HHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           80 AKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        80 ~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ...+   .     .+||||+|||++|||++.+|+++++|   ||++.+|...++.+.
T Consensus       103 ~~~~---~-----~LSgGe~qrv~la~al~~~p~vlllD---EP~~~LD~~~~~~l~  148 (192)
T cd03232         103 SALL---R-----GLSVEQRKRLTIGVELAAKPSILFLD---EPTSGLDSQAAYNIV  148 (192)
T ss_pred             HHHH---h-----cCCHHHhHHHHHHHHHhcCCcEEEEe---CCCcCCCHHHHHHHH
Confidence            0001   1     78999999999999999999999999   999999998887543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.6e-27  Score=178.61  Aligned_cols=130  Identities=14%  Similarity=0.065  Sum_probs=94.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+|+||||||||+++|+|+++     |++|+|.++|..+..  .......+++.++|+||++.++...       
T Consensus        50 Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~  127 (271)
T PRK14238         50 NEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD--KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTY  127 (271)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc--ccccHHHHhhhEEEEecCCccccccHHHHHHH
Confidence            46799999999999999999999987     699999999963321  1123345667899999998765310       


Q ss_pred             -----cCChh--hHHHHHHHHHHhh----h---hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 -----TLDIQ--DKESVAKLVKLID----K---SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 -----~~~~~--~~~~~~~~l~~l~----~---~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                           ....+  ....+.++++.++    +   .+..  .+||||+|||+|||||+.+|+++++|   ||++.+|....+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLD---EPt~~LD~~~~~  204 (271)
T PRK14238        128 GPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMD---EPTSALDPISTL  204 (271)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCCcCCHHHHH
Confidence                 00011  1223344454432    1   1233  37999999999999999999999999   999999998877


Q ss_pred             hcc
Q 032336          134 KYI  136 (143)
Q Consensus       134 ~~~  136 (143)
                      .+.
T Consensus       205 ~l~  207 (271)
T PRK14238        205 KVE  207 (271)
T ss_pred             HHH
Confidence            543

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.94  E-value=1.1e-27  Score=173.42  Aligned_cols=115  Identities=11%  Similarity=0.034  Sum_probs=88.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC--cccCCceEEEcceeehhhhccccHHHH-HhhcchhcccccccccccCChhhHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF--LSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFSTLDIQDKES   78 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~~~~~~~~~   78 (143)
                      +..++|+||||||||||+++|+|+  ++|++|+|.++|.    ++........ +..++|+||++.+++...        
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~----~~~~~~~~~~~~~~i~~v~q~~~~~~~~~--------   93 (200)
T cd03217          26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGE----DITDLPPEERARLGIFLAFQYPPEIPGVK--------   93 (200)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCE----ECCcCCHHHHhhCcEEEeecChhhccCcc--------
Confidence            457899999999999999999999  5799999999996    3333333333 445999999987653221        


Q ss_pred             HHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           79 VAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        79 ~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +.+.+.    .....+|+||+|||++|||++.+|+++++|   ||++.+|...++.+
T Consensus        94 ~~~~l~----~~~~~LS~G~~qrv~laral~~~p~illlD---EPt~~LD~~~~~~l  143 (200)
T cd03217          94 NADFLR----YVNEGFSGGEKKRNEILQLLLLEPDLAILD---EPDSGLDIDALRLV  143 (200)
T ss_pred             HHHHHh----hccccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHH
Confidence            112221    112358999999999999999999999999   99999999887644

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.6e-27  Score=176.45  Aligned_cols=129  Identities=15%  Similarity=0.051  Sum_probs=95.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+.+     |++|+|.++|..+..  .......+++.++|+||++.+|...       
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~--~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~  106 (250)
T PRK14266         29 NSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD--PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAY  106 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc--ccccHHHHhhheEEEecCCccCcchHHHHHHh
Confidence            46789999999999999999999864     489999999963211  1122345677899999998766310       


Q ss_pred             ---cC---Ch-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 ---TL---DI-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 ---~~---~~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                         ..   .. ...+.+.++++.+++       .+..  .+|+||+||++||||++.+|+++++|   ||++.+|...++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD---EP~~gLD~~~~~  183 (250)
T PRK14266        107 GLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMD---EPCSALDPISTT  183 (250)
T ss_pred             HHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc---CCCccCCHHHHH
Confidence               00   11 112345566666553       1222  37999999999999999999999999   999999998876


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       184 ~l  185 (250)
T PRK14266        184 KI  185 (250)
T ss_pred             HH
Confidence            44

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.94  E-value=1.5e-27  Score=177.79  Aligned_cols=127  Identities=12%  Similarity=0.067  Sum_probs=94.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC--cccCCceEEEcceeehhhhccccHHHHHh-hcchhccccccccccc--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF--LSLIGSNICCSNVFYLQAVHNSACRKLTK-ELCDVIEDYSLVNFST--------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~~-~ig~V~Q~~~l~~~~~--------   70 (143)
                      ++.++|+||||||||||+++|+|+  ++|++|+|+++|..    +........++ .++|++|++.+++..+        
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~----~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~  108 (252)
T CHL00131         33 GEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGES----ILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLA  108 (252)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEE----cccCChhhhheeeEEEEeccccccccccHHHHHHHh
Confidence            467999999999999999999998  57999999999963    33333333333 4789999876542110        


Q ss_pred             C---------Ch----hhHHHHHHHHHHhhhh----CCC---cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           71 L---------DI----QDKESVAKLVKLIDKS----NGY---IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        71 ~---------~~----~~~~~~~~~l~~l~~~----~~~---~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                      .         ..    +..+.+.++++.+++.    +..   .+||||+|||+||||++.+|+++++|   ||++.+|..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EPt~~LD~~  185 (252)
T CHL00131        109 YNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILD---ETDSGLDID  185 (252)
T ss_pred             hhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCCHH
Confidence            0         00    1123456677777653    121   38999999999999999999999999   999999998


Q ss_pred             hhhhc
Q 032336          131 VQEKY  135 (143)
Q Consensus       131 ~~~~~  135 (143)
                      .++.+
T Consensus       186 ~~~~l  190 (252)
T CHL00131        186 ALKII  190 (252)
T ss_pred             HHHHH
Confidence            87744

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.3e-27  Score=177.05  Aligned_cols=127  Identities=15%  Similarity=0.059  Sum_probs=94.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccc--cHHHHHhhcchhccccccccc------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNS--ACRKLTKELCDVIEDYSLVNF------   68 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~--~~~~~~~~ig~V~Q~~~l~~~------   68 (143)
                      +..++|+||||||||||+++|+|+.++     ++|+|.++|..+    ...  .....++.++|++|++.+++.      
T Consensus        32 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~----~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni  107 (253)
T PRK14261         32 NRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENI----MDSGADVVALRRKIGMVFQRPNPFPKSIYENV  107 (253)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc----cccccchhhhhceEEEEecCCccCcccHHHHH
Confidence            457899999999999999999999753     489999999633    222  234556779999999876531      


Q ss_pred             --c-c---C-Ch-hhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           69 --S-T---L-DI-QDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        69 --~-~---~-~~-~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                        . .   . .. +..+.+.++++.+++       .+...  +|+||+|||+||||++.+|+++++|   ||++.+|...
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EP~~gLD~~~  184 (253)
T PRK14261        108 AYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMD---EPCSALDPIA  184 (253)
T ss_pred             HhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHH
Confidence              0 0   0 11 112345566666554       12332  7999999999999999999999999   9999999988


Q ss_pred             hhhc
Q 032336          132 QEKY  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      ++.+
T Consensus       185 ~~~l  188 (253)
T PRK14261        185 TAKI  188 (253)
T ss_pred             HHHH
Confidence            8744

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=2.6e-27  Score=192.06  Aligned_cols=127  Identities=11%  Similarity=0.024  Sum_probs=96.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-cCCceEEEcceeehhhhcccc-HHHHHhhcchhccccc---ccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-LIGSNICCSNVFYLQAVHNSA-CRKLTKELCDVIEDYS---LVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~-~~~~~~~ig~V~Q~~~---l~~~~-------   69 (143)
                      +..++|+||||||||||+|+|+|+++ |++|+|.++|..+    .... ....++.++|++|++.   +++..       
T Consensus       288 Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~----~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~  363 (506)
T PRK13549        288 GEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPV----KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNIT  363 (506)
T ss_pred             CcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEEC----CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhh
Confidence            45789999999999999999999998 5999999999633    2222 2334567999999852   33110       


Q ss_pred             -----cC------C-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           70 -----TL------D-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        70 -----~~------~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                           ..      . .+..+.+.++++.+++.    +..+  +||||||||+||||++.+|++|++|   ||++.+|...
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLD---EPt~~LD~~~  440 (506)
T PRK13549        364 LAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILD---EPTRGIDVGA  440 (506)
T ss_pred             hhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEc---CCCCCcCHhH
Confidence                 00      1 11234577888888763    2333  7999999999999999999999999   9999999988


Q ss_pred             hhhc
Q 032336          132 QEKY  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      ++.+
T Consensus       441 ~~~l  444 (506)
T PRK13549        441 KYEI  444 (506)
T ss_pred             HHHH
Confidence            8754

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.94  E-value=2e-27  Score=193.18  Aligned_cols=131  Identities=11%  Similarity=0.063  Sum_probs=95.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc--ccCCceEEEcc-----------------------eeeh---hhhcc---ccHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL--SLIGSNICCSN-----------------------VFYL---QAVHN---SACR   50 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~~~G~i~~~g-----------------------~~~~---~~~~~---~~~~   50 (143)
                      +..++|+||||||||||+|+|+|++  +|++|+|.+++                       ..+.   .+...   ....
T Consensus        26 Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  105 (520)
T TIGR03269        26 GEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRR  105 (520)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHH
Confidence            4678999999999999999999997  79999999872                       1000   00101   0112


Q ss_pred             HHHhhcchhccc-cccccccc-------------CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhh
Q 032336           51 KLTKELCDVIED-YSLVNFST-------------LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVR  110 (143)
Q Consensus        51 ~~~~~ig~V~Q~-~~l~~~~~-------------~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~  110 (143)
                      .+++.++|+||+ +.+++..+             .. .+..+++.++++.+++.   +..+  +||||||||+|||||+.
T Consensus       106 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~  185 (520)
T TIGR03269       106 RIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAK  185 (520)
T ss_pred             HhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhc
Confidence            345679999997 44442111             11 12235677888888763   3333  79999999999999999


Q ss_pred             cCCcccccCCccccchhhhhhhhhc
Q 032336          111 NVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus       111 ~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +|++||+|   ||++.||...++.+
T Consensus       186 ~p~lllLD---EPt~~LD~~~~~~l  207 (520)
T TIGR03269       186 EPFLFLAD---EPTGTLDPQTAKLV  207 (520)
T ss_pred             CCCEEEee---CCcccCCHHHHHHH
Confidence            99999999   99999999888754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.94  E-value=2.4e-27  Score=210.98  Aligned_cols=128  Identities=13%  Similarity=0.048  Sum_probs=105.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----cc-CChhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----ST-LDIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~-~~~~~   75 (143)
                      ++++||+|+||||||||+++|.|+++|++|+|.++|.    ++...+...+|+++++|||++.+|.-     .. .....
T Consensus      1312 GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~----dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~s 1387 (1522)
T TIGR00957      1312 GEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGL----NIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYS 1387 (1522)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCE----EccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCC
Confidence            5789999999999999999999999999999999997    66778889999999999999998831     11 11223


Q ss_pred             HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .+.+.++++.+++.                .+..+|||||||++||||+..+|++|++|   |||+.+|.++...+.
T Consensus      1388 deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLD---EaTSalD~~Te~~Iq 1461 (1522)
T TIGR00957      1388 DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLD---EATAAVDLETDNLIQ 1461 (1522)
T ss_pred             HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHHHH
Confidence            44566677765431                12337999999999999999999999999   999999998876543

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.3e-27  Score=177.48  Aligned_cols=128  Identities=13%  Similarity=0.045  Sum_probs=95.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-----   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-----   71 (143)
                      +..++|+||||||||||+++|+|+++|     ++|+|.++|..+..  .......+++.++|++|++.+++. +.     
T Consensus        51 Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~--~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~  127 (272)
T PRK14236         51 NRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD--KKVDVAELRRRVGMVFQRPNPFPK-SIYENVV  127 (272)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc--cccCHHHHhccEEEEecCCccCcc-cHHHHHH
Confidence            467899999999999999999999874     89999999963321  112334567789999999876531 10     


Q ss_pred             ---------Ch-hhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           72 ---------DI-QDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        72 ---------~~-~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                               .. ...+.+.++++.+++.       +..  .+|+||+|||+||||++.+|+++++|   ||++.+|...+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD---EPt~gLD~~~~  204 (272)
T PRK14236        128 YGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLD---EPTSALDPIST  204 (272)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEe---CCcccCCHHHH
Confidence                     01 1123456666665541       222  37999999999999999999999999   99999999887


Q ss_pred             hhc
Q 032336          133 EKY  135 (143)
Q Consensus       133 ~~~  135 (143)
                      ..+
T Consensus       205 ~~l  207 (272)
T PRK14236        205 LKI  207 (272)
T ss_pred             HHH
Confidence            643

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.4e-27  Score=176.47  Aligned_cols=128  Identities=14%  Similarity=0.095  Sum_probs=96.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccC-----CceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI-----GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-----   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-----   71 (143)
                      +..++|+||||||||||+++|+|+++|+     +|+|.++|..+..  .......+++.++|++|++.+++ .+.     
T Consensus        33 Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~  109 (261)
T PRK14258         33 SKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE--RRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVA  109 (261)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhc--cccchHHhhccEEEEecCCccCc-ccHHHHHH
Confidence            4678999999999999999999999985     7999998863210  11223455677999999987653 111     


Q ss_pred             ---------Ch-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           72 ---------DI-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        72 ---------~~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                               .. +..+.+.++++.+++       .+..  .+||||+|||+|||+++.+|+++++|   ||++.+|...+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLD---EP~~~LD~~~~  186 (261)
T PRK14258        110 YGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMD---EPCFGLDPIAS  186 (261)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHH
Confidence                     11 113445667777664       1233  37999999999999999999999999   99999999887


Q ss_pred             hhc
Q 032336          133 EKY  135 (143)
Q Consensus       133 ~~~  135 (143)
                      +.+
T Consensus       187 ~~l  189 (261)
T PRK14258        187 MKV  189 (261)
T ss_pred             HHH
Confidence            744

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=5.1e-27  Score=175.88  Aligned_cols=130  Identities=14%  Similarity=0.100  Sum_probs=97.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeeh--hhhccccHHHHHhhcchhccccccccccc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYL--QAVHNSACRKLTKELCDVIEDYSLVNFST---------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~---------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|....  .++...+...+++.++|++|++.+++..+         
T Consensus        36 Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~  115 (257)
T PRK14246         36 NSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPL  115 (257)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHH
Confidence            4679999999999999999999999999988887774321  12333344556778999999987653211         


Q ss_pred             ----CC-h-hhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           71 ----LD-I-QDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        71 ----~~-~-~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                          .. . +....+.++++.+++.       +..  .+|+||+||++||||++.+|+++++|   ||++.+|...+..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllD---EPt~~LD~~~~~~  191 (257)
T PRK14246        116 KSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMD---EPTSMIDIVNSQA  191 (257)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEc---CCCccCCHHHHHH
Confidence                11 1 1124566777776652       222  27999999999999999999999999   9999999987663

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3.9e-27  Score=180.41  Aligned_cols=129  Identities=13%  Similarity=0.079  Sum_probs=96.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--------   68 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--------   68 (143)
                      +..++|+||||||||||+++|+|+++     |++|+|.++|..+..  .......+++.++|++|++.+++.        
T Consensus        71 Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~--~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~  148 (305)
T PRK14264         71 KSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ--DGVNLVELRKRVGMVFQSPNPFPKSIRENISY  148 (305)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc--ccccHHHHhhceEEEccCCccccccHHHHHHh
Confidence            45789999999999999999999986     689999999963321  112334566789999999875421        


Q ss_pred             --cc--------------CC--hhhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCc
Q 032336           69 --ST--------------LD--IQDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPS  121 (143)
Q Consensus        69 --~~--------------~~--~~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~  121 (143)
                        ..              ..  ....+.+.++++.+++       .+..+  +||||+|||+|||||+++|++||+|   
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLD---  225 (305)
T PRK14264        149 GPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMD---  225 (305)
T ss_pred             HHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence              00              00  1113446666776654       12333  7999999999999999999999999   


Q ss_pred             cccchhhhhhhhhc
Q 032336          122 FHLFQSLAEVQEKY  135 (143)
Q Consensus       122 ~~~~~~~~~~~~~~  135 (143)
                      ||++.+|...+..+
T Consensus       226 EPtsgLD~~~~~~l  239 (305)
T PRK14264        226 EPASALDPIATSKI  239 (305)
T ss_pred             CCcccCCHHHHHHH
Confidence            99999999887744

>PTZ00243 ABC transporter; Provisional

Probab=99.94  E-value=3.3e-27  Score=210.20  Aligned_cols=127  Identities=12%  Similarity=0.124  Sum_probs=104.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----cc-CChhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----ST-LDIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~-~~~~~   75 (143)
                      +.++||+|+||||||||+++|.|+++|++|+|.++|.    ++...+.+.+|+.|++|||++.+|.-     .. .....
T Consensus      1336 GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~----di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~s 1411 (1560)
T PTZ00243       1336 REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGR----EIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEAS 1411 (1560)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE----EcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCC
Confidence            5689999999999999999999999999999999997    66777888999999999999998831     11 11223


Q ss_pred             HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhc-CCcccccCCccccchhhhhhhhhc
Q 032336           76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRN-VDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~-p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .+.+.++++.+++.                .+.-+|||||||++|||||..+ |++|+||   |||+.+|.++...+
T Consensus      1412 deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLD---EATSaLD~~te~~I 1485 (1560)
T PTZ00243       1412 SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMD---EATANIDPALDRQI 1485 (1560)
T ss_pred             HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEe---CCCccCCHHHHHHH
Confidence            45677777776531                1233799999999999999995 8999999   99999998887654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.94  E-value=3.7e-27  Score=192.04  Aligned_cols=127  Identities=16%  Similarity=0.139  Sum_probs=96.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH---HHHHhhcchhccccc--cccccc------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC---RKLTKELCDVIEDYS--LVNFST------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~---~~~~~~ig~V~Q~~~--l~~~~~------   70 (143)
                      +..++|+||||||||||+|+|+|+++ ++|+|+++|..+    ...+.   ..+++.++||||++.  +++..+      
T Consensus       312 Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i----~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~  386 (529)
T PRK15134        312 GETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPL----HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIE  386 (529)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEc----cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHH
Confidence            45789999999999999999999995 899999999633    22222   234567999999963  332110      


Q ss_pred             ---------CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           71 ---------LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        71 ---------~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                               .. .+..+.+.++++.+++.    +..+  +||||||||+||||++.+|+++|+|   ||++.+|...++.
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~~  463 (529)
T PRK15134        387 EGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD---EPTSSLDKTVQAQ  463 (529)
T ss_pred             HHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEee---CCccccCHHHHHH
Confidence                     11 12235677888887763    3333  7999999999999999999999999   9999999998875


Q ss_pred             cc
Q 032336          135 YI  136 (143)
Q Consensus       135 ~~  136 (143)
                      +.
T Consensus       464 l~  465 (529)
T PRK15134        464 IL  465 (529)
T ss_pred             HH
Confidence            43

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.94  E-value=1.8e-27  Score=169.40  Aligned_cols=86  Identities=17%  Similarity=0.089  Sum_probs=76.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      ++.++|+||||||||||+|+|+|+++|++|+|.++|.                .++|++|+..                 
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----------------~i~~~~q~~~-----------------   71 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI----------------TPVYKPQYID-----------------   71 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE----------------EEEEEcccCC-----------------
Confidence            4678999999999999999999999999999999884                1677777542                 


Q ss_pred             HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                                  +|+||+||+++|||++.+|+++++|   ||++.+|...++.+
T Consensus        72 ------------LSgGq~qrv~laral~~~p~lllLD---EPts~LD~~~~~~l  110 (177)
T cd03222          72 ------------LSGGELQRVAIAAALLRNATFYLFD---EPSAYLDIEQRLNA  110 (177)
T ss_pred             ------------CCHHHHHHHHHHHHHhcCCCEEEEE---CCcccCCHHHHHHH
Confidence                        8999999999999999999999999   99999999887643

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.94  E-value=2.9e-27  Score=171.40  Aligned_cols=114  Identities=17%  Similarity=0.174  Sum_probs=84.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cCC-hhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TLD-IQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~~-~~~   75 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|                 .++|++|++.+++..     ... ...
T Consensus        31 G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-----------------~i~~~~q~~~l~~~t~~enl~~~~~~~   93 (204)
T cd03250          31 GELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-----------------SIAYVSQEPWIQNGTIRENILFGKPFD   93 (204)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-----------------EEEEEecCchhccCcHHHHhccCCCcC
Confidence            357899999999999999999999999999999877                 388999987765211     010 001


Q ss_pred             HHHHHHHHHHhh------hh----------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           76 KESVAKLVKLID------KS----------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        76 ~~~~~~~l~~l~------~~----------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .+...++++.++      ..          ....+|+||+|||+||||++.+|+++++|   ||++.+|...++..
T Consensus        94 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~~l  166 (204)
T cd03250          94 EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD---DPLSAVDAHVGRHI  166 (204)
T ss_pred             HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHH
Confidence            112223333222      11          11237999999999999999999999999   99999999887643

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.8e-27  Score=186.83  Aligned_cols=128  Identities=11%  Similarity=0.083  Sum_probs=106.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc-----cccCC--hh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN-----FSTLD--IQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~-----~~~~~--~~   74 (143)
                      ++++||+|+||||||||+.+|.|.++|++|+|.++|.    ++...+.+.++..+++++|...+|.     +....  ..
T Consensus       364 GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~----~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~A  439 (573)
T COG4987         364 GEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGV----EIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA  439 (573)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCc----ChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCC
Confidence            5789999999999999999999999999999999997    6677777889999999999999882     11111  12


Q ss_pred             hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ..+.+.++++++++.                .+..+||||+||++|||+|.++.++++||   |||..||..+...++
T Consensus       440 sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLD---EPTegLD~~TE~~vL  514 (573)
T COG4987         440 SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLD---EPTEGLDPITERQVL  514 (573)
T ss_pred             CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEec---CCcccCChhhHHHHH
Confidence            245677778877642                23347999999999999999999999999   999999998877543

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6.3e-27  Score=189.16  Aligned_cols=127  Identities=10%  Similarity=0.034  Sum_probs=96.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhccccc---cccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDYS---LVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~~---l~~~~~-------   70 (143)
                      +..++|+||||||||||+++|+|+.+|++|+|+++|..    +...+. ..+++.++|++|++.   +++..+       
T Consensus       274 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~  349 (491)
T PRK10982        274 GEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKK----INNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLI  349 (491)
T ss_pred             CcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEE----CCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheeh
Confidence            46799999999999999999999999999999999963    322232 234567999999843   222110       


Q ss_pred             ------------CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           71 ------------LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        71 ------------~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                                  .. ....+.+.++++.+++.    +..+  +||||||||+||||++.+|++||+|   |||+.+|...
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLD---EPt~gLD~~~  426 (491)
T PRK10982        350 SNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLD---EPTRGIDVGA  426 (491)
T ss_pred             hhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEc---CCCcccChhH
Confidence                        01 11234566777777663    2233  7999999999999999999999999   9999999988


Q ss_pred             hhhc
Q 032336          132 QEKY  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      ++.+
T Consensus       427 ~~~~  430 (491)
T PRK10982        427 KFEI  430 (491)
T ss_pred             HHHH
Confidence            8754

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6.3e-27  Score=174.56  Aligned_cols=128  Identities=16%  Similarity=0.138  Sum_probs=93.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc--c---CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS--L---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-----   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~--~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-----   71 (143)
                      +..++|+||||||||||+++|+|+++  |   ++|+|.++|..+..  ........++.++|++|++.+++. +.     
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~-tv~~nl~  107 (252)
T PRK14255         31 NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA--PNEDVVQLRKQVGMVFQQPNPFPF-SIYENVI  107 (252)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc--ccccHHHhcCeEEEEECCCccCCC-cHHHHHH
Confidence            35799999999999999999999875  4   58999999963321  112233456779999999876531 10     


Q ss_pred             --------Chhh--HHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           72 --------DIQD--KESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        72 --------~~~~--~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                              ...+  .+.+.++++.+++       .+..  .+|+||+|||+||||++.+|+++|+|   ||++.+|...+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD---EPt~~LD~~~~  184 (252)
T PRK14255        108 YGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLD---EPTSALDPISS  184 (252)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHH
Confidence                    1111  2234445555542       1233  37999999999999999999999999   99999999887


Q ss_pred             hhc
Q 032336          133 EKY  135 (143)
Q Consensus       133 ~~~  135 (143)
                      +.+
T Consensus       185 ~~l  187 (252)
T PRK14255        185 TQI  187 (252)
T ss_pred             HHH
Confidence            744

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.94  E-value=5.4e-27  Score=184.98  Aligned_cols=128  Identities=14%  Similarity=0.088  Sum_probs=101.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhcccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~~l~~~~~~---------   71 (143)
                      ++..||+|.||||||||+++|.|+++|++|+|+++|+    .+.-.++ ...+..||+|+|++.|++..++         
T Consensus        30 GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~----~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e  105 (501)
T COG3845          30 GEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGK----EVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLE  105 (501)
T ss_pred             CcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCE----EeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCc
Confidence            4678999999999999999999999999999999997    3333444 4456679999999998853321         


Q ss_pred             -------C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           72 -------D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        72 -------~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                             . ....+.+.++.++.++.   +.++  +|-||||||+|-+||.+++++|+||   |||+-|-+.-.++++
T Consensus       106 ~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILD---EPTaVLTP~E~~~lf  180 (501)
T COG3845         106 PSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILD---EPTAVLTPQEADELF  180 (501)
T ss_pred             cccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHHH
Confidence                   1 23455677777777763   3443  6999999999999999999999999   999988776665544

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6.3e-27  Score=180.91  Aligned_cols=129  Identities=14%  Similarity=0.093  Sum_probs=95.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------   69 (143)
                      +..++|+||||||||||+++|+|+.+     |++|+|.++|..+..  .......+++.++||||++.+|...       
T Consensus       108 Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~--~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~  185 (329)
T PRK14257        108 NKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS--KKISSLELRTRIGMVFQKPTPFEMSIFDNVAY  185 (329)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc--cccchHhhhccEEEEecCCccCCCcHHHHHHh
Confidence            46799999999999999999999986     579999999974321  1223346778899999998876311       


Q ss_pred             -c----CChhh--HHHHHHHHHHhhhh---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           70 -T----LDIQD--KESVAKLVKLIDKS---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        70 -~----~~~~~--~~~~~~~l~~l~~~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                       .    ...+.  .+.+.++++.+++.         ....+||||||||+||||++.+|+++|+|   ||++.+|..+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLD---EPts~LD~~~~~  262 (329)
T PRK14257        186 GPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMD---EPTSALDPIATA  262 (329)
T ss_pred             HHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEe---CCcccCCHHHHH
Confidence             0    00111  12245556665431         22237999999999999999999999999   999999998876


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       263 ~i  264 (329)
T PRK14257        263 KI  264 (329)
T ss_pred             HH
Confidence            53

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.94  E-value=8.1e-27  Score=170.68  Aligned_cols=126  Identities=13%  Similarity=0.120  Sum_probs=100.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhccccc-----------c----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDYS-----------L----   65 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~~-----------l----   65 (143)
                      ++..+|+|||||||||||++++|.++|++|.+.+.|+..+    ..+. .++|++||+|.-...           +    
T Consensus        57 ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G----~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg  132 (257)
T COG1119          57 GEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFG----KGETIFELRKRIGLVSSELHERFRVRETVRDVVLSG  132 (257)
T ss_pred             CCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeecc----CCcchHHHHHHhCccCHHHHhhcccccccceeeeec
Confidence            3567899999999999999999999999999999997433    2233 789999999863311           0    


Q ss_pred             -cc----cc-cCChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           66 -VN----FS-TLDIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        66 -~~----~~-~~~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                       |.    +. .+++++.+.+..+++.++.   ++++.  +|-||||||.|||||+.+|++|+||   ||+..+|....++
T Consensus       133 ~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLD---EP~~GLDl~~re~  209 (257)
T COG1119         133 FFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD---EPAQGLDLIAREQ  209 (257)
T ss_pred             ccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEec---CccccCChHHHHH
Confidence             00    11 2345667788888998875   35554  7999999999999999999999999   9999999988764

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.94  E-value=6.9e-27  Score=176.90  Aligned_cols=128  Identities=18%  Similarity=0.155  Sum_probs=100.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-c----CCceEEEcceeehhhhccccHH---HHH-hhcchhccccc--ccccc-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-L----IGSNICCSNVFYLQAVHNSACR---KLT-KELCDVIEDYS--LVNFS-   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-~----~~G~i~~~g~~~~~~~~~~~~~---~~~-~~ig~V~Q~~~--l~~~~-   69 (143)
                      ++.+||+|.|||||||+.+.|+|+++ |    .+|+|.|+|.+    +...+.+   ++| +.|+++||++.  |.|.. 
T Consensus        31 GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~----l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~  106 (316)
T COG0444          31 GEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKD----LLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMT  106 (316)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcc----cccCCHHHHHhhcCceEEEEEcCchhhcCChhh
Confidence            46799999999999999999999997 3    57999999973    3333333   333 57999999975  22211 


Q ss_pred             -------------cC--ChhhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccch
Q 032336           70 -------------TL--DIQDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQ  126 (143)
Q Consensus        70 -------------~~--~~~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~  126 (143)
                                   ..  .++..+++.++|+.+++.      +.|+  +|||++|||.||.|++.+|++|+.|   |||+-
T Consensus       107 Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIAD---EPTTA  183 (316)
T COG0444         107 IGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIAD---EPTTA  183 (316)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeC---CCcch
Confidence                         11  223456788888888763      4555  7999999999999999999999999   99999


Q ss_pred             hhhhhhhhcc
Q 032336          127 SLAEVQEKYI  136 (143)
Q Consensus       127 ~~~~~~~~~~  136 (143)
                      ||.-+|..++
T Consensus       184 LDvt~QaqIl  193 (316)
T COG0444         184 LDVTVQAQIL  193 (316)
T ss_pred             hhHHHHHHHH
Confidence            9999998654

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=8.8e-27  Score=173.01  Aligned_cols=103  Identities=14%  Similarity=0.092  Sum_probs=86.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      ++.++|+|+||||||||-|+|.|+++|++|+|+++|+    ++....                       ..+..+++.+
T Consensus        39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~----~i~~~~-----------------------~~~~~~~v~e   91 (268)
T COG4608          39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGK----DITKLS-----------------------KEERRERVLE   91 (268)
T ss_pred             CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCc----chhhcc-----------------------hhHHHHHHHH
Confidence            4678999999999999999999999999999999996    322211                       2234567888


Q ss_pred             HHHHhhh----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           82 LVKLIDK----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        82 ~l~~l~~----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      +|+.+++    ..+|+  +||||+||+.|||||+.+|++++.|   ||++.+|..+|..
T Consensus        92 lL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~D---EpvSaLDvSiqaq  147 (268)
T COG4608          92 LLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVAD---EPVSALDVSVQAQ  147 (268)
T ss_pred             HHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEec---CchhhcchhHHHH
Confidence            8998875    35555  7999999999999999999999999   9999999988864

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.94  E-value=6.4e-27  Score=189.06  Aligned_cols=129  Identities=9%  Similarity=-0.027  Sum_probs=96.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-CCceEEEcceeehhhhccccHHHHHhhcchhccccccccc------------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF------------   68 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~------------   68 (143)
                      +..++|+||||||||||+|+|+|+.++ ++|+|+++|..+.   ........++.++|++|++.++..            
T Consensus       286 Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~---~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~  362 (490)
T PRK10938        286 GEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRG---SGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSG  362 (490)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCC---CCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhc
Confidence            467899999999999999999998875 6999999996321   111223456789999998643210            


Q ss_pred             -c---c-C---ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           69 -S---T-L---DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        69 -~---~-~---~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                       .   . .   ..+..+.++++++.+++.    +..+  +||||||||+||||++.+|+++++|   ||++.+|...++.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD---EPt~gLD~~~~~~  439 (490)
T PRK10938        363 FFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILD---EPLQGLDPLNRQL  439 (490)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CccccCCHHHHHH
Confidence             0   0 0   112234677888888763    3333  7999999999999999999999999   9999999988775


Q ss_pred             cc
Q 032336          135 YI  136 (143)
Q Consensus       135 ~~  136 (143)
                      +.
T Consensus       440 l~  441 (490)
T PRK10938        440 VR  441 (490)
T ss_pred             HH
Confidence            43

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.94  E-value=3.1e-27  Score=166.62  Aligned_cols=105  Identities=10%  Similarity=0.153  Sum_probs=84.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.+++.               +.++|++|++.++. .  .      +.+
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---------------~~i~~~~q~~~~~~-~--t------v~~   82 (166)
T cd03223          27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---------------EDLLFLPQRPYLPL-G--T------LRE   82 (166)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---------------ceEEEECCCCcccc-c--c------HHH
Confidence            4578999999999999999999999999999998762               45999999976431 1  1      111


Q ss_pred             HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .+..   .....+|+||+||+++|||++.+|+++++|   ||++.+|...++++.
T Consensus        83 nl~~---~~~~~LS~G~~~rv~laral~~~p~~lllD---EPt~~LD~~~~~~l~  131 (166)
T cd03223          83 QLIY---PWDDVLSGGEQQRLAFARLLLHKPKFVFLD---EATSALDEESEDRLY  131 (166)
T ss_pred             Hhhc---cCCCCCCHHHHHHHHHHHHHHcCCCEEEEE---CCccccCHHHHHHHH
Confidence            1111   023458999999999999999999999999   999999998887543

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.94  E-value=7.5e-27  Score=174.87  Aligned_cols=126  Identities=13%  Similarity=0.090  Sum_probs=92.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEE-----------EcceeehhhhccccHHHHH--hhcchhccccccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC-----------CSNVFYLQAVHNSACRKLT--KELCDVIEDYSLVNF   68 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~-----------~~g~~~~~~~~~~~~~~~~--~~ig~V~Q~~~l~~~   68 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.           ++|.    ++........+  ..+++++|...+++.
T Consensus        26 Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (255)
T cd03236          26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGS----ELQNYFTKLLEGDVKVIVKPQYVDLIPK  101 (255)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCc----hhhhhhHHhhhcccceeeecchhccCch
Confidence            457999999999999999999999999999996           5564    22222111122  136788887665431


Q ss_pred             c-------c-CChhhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           69 S-------T-LDIQDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        69 ~-------~-~~~~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      .       . ......+.+.++++.+++.   +..  .+|+||+||+++|||++.+|+++++|   ||++.+|...+.+
T Consensus       102 ~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD---EPts~LD~~~~~~  177 (255)
T cd03236         102 AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFD---EPSSYLDIKQRLN  177 (255)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCCCCCCHHHHHH
Confidence            0       0 1112345677888888763   233  27999999999999999999999999   9999999987653

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.94  E-value=5.2e-27  Score=181.89  Aligned_cols=130  Identities=16%  Similarity=0.149  Sum_probs=103.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccccc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFST---------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~~---------   70 (143)
                      +..++|+|.||||||||=..|.+++++. |+|.|.|+.+. ..+....+.+|+++-+|||||.  |.|.++         
T Consensus       313 gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~-~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL  390 (534)
T COG4172         313 GQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID-GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGL  390 (534)
T ss_pred             CCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc-ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhh
Confidence            4578999999999999999999999776 99999997432 2233334567788999999986  222111         


Q ss_pred             ------CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 ------LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 ------~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                            .+ .+..+++.++|+.+|+.    ++|+  +|||||||++||||++.+|+++++|   ||++-||..+|.-+.
T Consensus       391 ~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LD---EPTSALD~SVQaQvv  466 (534)
T COG4172         391 RVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLD---EPTSALDRSVQAQVL  466 (534)
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEec---CCchHhhHHHHHHHH
Confidence                  12 34457889999999873    6676  7999999999999999999999999   999999999987543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.94  E-value=7.1e-27  Score=207.00  Aligned_cols=128  Identities=12%  Similarity=0.083  Sum_probs=99.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEc-ceeehhhhccccHHHHHhhcchhcccccccc--------cccCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCS-NVFYLQAVHNSACRKLTKELCDVIEDYSLVN--------FSTLD   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~-g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~--------~~~~~   72 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++ |.    ++...+.+.+|+.|+||+|++.+|.        +....
T Consensus       411 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~----~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~  486 (1466)
T PTZ00265        411 GKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSH----NLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYS  486 (1466)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCc----chhhCCHHHHHHhccEecccccchhccHHHHHHhcCCC
Confidence            46799999999999999999999999999999995 54    4555667778899999999998773        10000


Q ss_pred             --------------------------------------------------------hhhHHHHHHHHHHhhh-------h
Q 032336           73 --------------------------------------------------------IQDKESVAKLVKLIDK-------S   89 (143)
Q Consensus        73 --------------------------------------------------------~~~~~~~~~~l~~l~~-------~   89 (143)
                                                                              ....+.+.++++.+++       .
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp  566 (1466)
T PTZ00265        487 LKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP  566 (1466)
T ss_pred             ccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCc
Confidence                                                                    0112345566665542       1


Q ss_pred             C---------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           90 N---------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        90 ~---------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      +         ...+|||||||++||||++.+|++|+||   ||++.+|...++.+.
T Consensus       567 ~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLD---EpTSaLD~~se~~i~  619 (1466)
T PTZ00265        567 DKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILD---EATSSLDNKSEYLVQ  619 (1466)
T ss_pred             cccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CcccccCHHHHHHHH
Confidence            1         2237999999999999999999999999   999999998877543

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=9.8e-27  Score=174.87  Aligned_cols=130  Identities=10%  Similarity=0.033  Sum_probs=94.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-----   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-----   71 (143)
                      ++.++|+||||||||||+++|+|+.+|     ++|+|.++|..+...-.......+++.++|++|++.+++. +.     
T Consensus        42 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~  120 (265)
T PRK14252         42 KQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVA  120 (265)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHH
Confidence            467999999999999999999999875     7999999985221000112234566789999999876532 10     


Q ss_pred             --------Ch--hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           72 --------DI--QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        72 --------~~--~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                              ..  ...+.+.++++.+++       .+..  .+|+||+|||+||||++.+|+++++|   ||++.+|....
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~gLD~~~~  197 (265)
T PRK14252        121 YGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFD---EPTSALDPIAT  197 (265)
T ss_pred             hHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCccCCHHHH
Confidence                    00  112345566665543       1222  37999999999999999999999999   99999999887


Q ss_pred             hhc
Q 032336          133 EKY  135 (143)
Q Consensus       133 ~~~  135 (143)
                      +++
T Consensus       198 ~~l  200 (265)
T PRK14252        198 ASI  200 (265)
T ss_pred             HHH
Confidence            754

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.2e-26  Score=185.24  Aligned_cols=127  Identities=16%  Similarity=0.124  Sum_probs=101.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHH-HHhhcchhccccccccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRK-LTKELCDVIEDYSLVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-~~~~ig~V~Q~~~l~~~~~----------   70 (143)
                      ++.+||+|.||||||||+|+|+|.++|++|+|.++|+    .....++.+ ....|+.|+|+..|++..+          
T Consensus        34 GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~----~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre  109 (500)
T COG1129          34 GEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGK----PVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGRE  109 (500)
T ss_pred             ceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCE----EccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccc
Confidence            4678999999999999999999999999999999997    444445544 4456999999998874322          


Q ss_pred             -------CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 -------LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 -------~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                             .+ +...+.+.++|+.++..   +..+  +|.||||.|+||||+..++++++||   |||+.|...-++..
T Consensus       110 ~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlD---EPTaaLt~~E~~~L  184 (500)
T COG1129         110 PTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILD---EPTAALTVKETERL  184 (500)
T ss_pred             cccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence                   11 23456778888887762   3333  6999999999999999999999999   99999987666543

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.93  E-value=1.1e-26  Score=160.38  Aligned_cols=85  Identities=13%  Similarity=0.036  Sum_probs=77.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|+++|.               +.++|++|                    
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---------------~~i~~~~~--------------------   70 (144)
T cd03221          26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---------------VKIGYFEQ--------------------   70 (144)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---------------EEEEEEcc--------------------
Confidence            4678999999999999999999999999999999873               25888887                    


Q ss_pred             HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                                  +|+||+||++||||++.+|+++++|   ||++.+|...++.+.
T Consensus        71 ------------lS~G~~~rv~laral~~~p~illlD---EP~~~LD~~~~~~l~  110 (144)
T cd03221          71 ------------LSGGEKMRLALAKLLLENPNLLLLD---EPTNHLDLESIEALE  110 (144)
T ss_pred             ------------CCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHHH
Confidence                        8999999999999999999999999   999999998877543

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.93  E-value=2e-26  Score=206.85  Aligned_cols=126  Identities=10%  Similarity=-0.005  Sum_probs=100.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++|..+    .. ...+.++.+||+||++.+++..+           
T Consensus       956 Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI----~~-~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~l 1030 (2272)
T TIGR01257       956 NQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI----ET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030 (2272)
T ss_pred             CcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEEC----cc-hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHh
Confidence            457899999999999999999999999999999999743    21 23456778999999987663221           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .. .+..+.++++++.+++.   +..+  +||||||||+||+||+.+|+++++|   ||++.+|...+..+
T Consensus      1031 kg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLD---EPTSGLDp~sr~~l 1100 (2272)
T TIGR01257      1031 KGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD---EPTSGVDPYSRRSI 1100 (2272)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCCcCCCHHHHHHH
Confidence              11 12235677888888763   3333  7999999999999999999999999   99999999887643

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.93  E-value=6.5e-26  Score=160.34  Aligned_cols=122  Identities=15%  Similarity=0.159  Sum_probs=96.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc--c-----------cc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV--N-----------FS   69 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~--~-----------~~   69 (143)
                      -.+||||.||||||||.|+|+|+++|++|+|.++|.    .+...++..+.++|-++||+++-.  |           ..
T Consensus        40 QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~----~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~  115 (267)
T COG4167          40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDH----PLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLR  115 (267)
T ss_pred             cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCc----cccccchHhhhhheeeeecCCccccChhhhhhhHhcchhh
Confidence            468999999999999999999999999999999996    455555666778899999998732  1           11


Q ss_pred             ---cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           70 ---TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        70 ---~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                         .... ...+++.+-|.++|+.    +.++  ++-||+|||++||||+.+|++++-|   |+...+|-..
T Consensus       116 l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaD---eAl~~LD~sm  184 (267)
T COG4167         116 LNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIAD---EALASLDMSM  184 (267)
T ss_pred             hcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEeh---hhhhhccHHH
Confidence               0122 2345677778888763    4444  6899999999999999999999999   7888777644

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.5e-26  Score=188.47  Aligned_cols=116  Identities=15%  Similarity=0.026  Sum_probs=89.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.++|.               ..++|++|++.++...+.          
T Consensus        27 Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~i~~~~q~~~~~~~~tv~e~l~~~~~~   91 (530)
T PRK15064         27 GNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN---------------ERLGKLRQDQFAFEEFTVLDTVIMGHTE   91 (530)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------------CEEEEEeccCCcCCCCcHHHHHHHhhHH
Confidence            4579999999999999999999999999999998762               237777777544321100          


Q ss_pred             ------------------------------------ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHh
Q 032336           72 ------------------------------------DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAV  109 (143)
Q Consensus        72 ------------------------------------~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~  109 (143)
                                                          ..+...++.++++.+++.    +..+  +||||||||+|||||+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~  171 (530)
T PRK15064         92 LWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALF  171 (530)
T ss_pred             HHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHh
Confidence                                                001123566778887763    2222  7999999999999999


Q ss_pred             hcCCcccccCCccccchhhhhhhhhc
Q 032336          110 RNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus       110 ~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .+|++||+|   ||++.+|...++.+
T Consensus       172 ~~p~lLlLD---EPt~~LD~~~~~~l  194 (530)
T PRK15064        172 SNPDILLLD---EPTNNLDINTIRWL  194 (530)
T ss_pred             cCCCEEEEc---CCCcccCHHHHHHH
Confidence            999999999   99999999887744

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.93  E-value=3.5e-26  Score=205.33  Aligned_cols=126  Identities=7%  Similarity=-0.018  Sum_probs=100.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      ++.++|+||||||||||+|+|+|+++|++|+|+++|..+    .. ...+.++.|||+||+..++...+           
T Consensus      1965 GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i----~~-~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l 2039 (2272)
T TIGR01257      1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI----LT-NISDVHQNMGYCPQFDAIDDLLTGREHLYLYARL 2039 (2272)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEEC----cc-hHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHh
Confidence            467899999999999999999999999999999999743    21 23456678999999987653221           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .. .+..+.++++++.+++.   +..+  +||||||||++|+||+.+|++++||   ||++.+|...+..+
T Consensus      2040 ~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLD---EPTsGLDp~sr~~l 2109 (2272)
T TIGR01257      2040 RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD---EPTTGMDPQARRML 2109 (2272)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCCCHHHHHHH
Confidence              11 12234567778888763   4444  7999999999999999999999999   99999999887743

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.93  E-value=4.8e-26  Score=189.31  Aligned_cols=127  Identities=13%  Similarity=0.037  Sum_probs=99.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHH----HHhhcchhccccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRK----LTKELCDVIEDYSLVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~----~~~~ig~V~Q~~~l~~~~~-------   70 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|.    ++...+.++    .++.++|+||++.+++..+       
T Consensus        34 Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~----~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~  109 (648)
T PRK10535         34 GEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQ----DVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV  109 (648)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE----EcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHH
Confidence            4678999999999999999999999999999999996    333333332    2467999999988764221       


Q ss_pred             -------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 -------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 -------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                             ...+..+.+.++++.+++.   +...  +|+||+||++|||||+.+|+++++|   ||+..+|...++.+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllD---EP~~gLD~~s~~~l  183 (648)
T PRK10535        110 PAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILAD---EPTGALDSHSGEEV  183 (648)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCCCHHHHHHH
Confidence                   1122344567778887763   2332  7999999999999999999999999   99999999988744

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.93  E-value=3.4e-26  Score=203.33  Aligned_cols=127  Identities=12%  Similarity=0.089  Sum_probs=104.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----c-cCChhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----S-TLDIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~-~~~~~~   75 (143)
                      +.++||+|+||||||||+++|.|+++ .+|+|.++|.    ++...+...+|++++||||++.+|.-     . ......
T Consensus      1245 GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~----di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~t 1319 (1490)
T TIGR01271      1245 GQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGV----SWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWS 1319 (1490)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCE----EcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCC
Confidence            56899999999999999999999997 7999999997    56777888999999999999998831     1 111223


Q ss_pred             HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .+.+.++++.+++.                .+..+|||||||++|||||..+|++|+||   |||+.+|.++..++.
T Consensus      1320 deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLD---EaTS~lD~~Te~~I~ 1393 (1490)
T TIGR01271      1320 DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLD---EPSAHLDPVTLQIIR 1393 (1490)
T ss_pred             HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEe---CCcccCCHHHHHHHH
Confidence            45677778776541                12237999999999999999999999999   999999998876553

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.93  E-value=2.7e-26  Score=184.33  Aligned_cols=131  Identities=15%  Similarity=0.102  Sum_probs=101.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccC----CceEEEcceeehhhhccccHHHHH-hhcchhccccc--ccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI----GSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYS--LVN-------   67 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~----~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~--l~~-------   67 (143)
                      ++.+||+|.|||||||+.+.|.|++++.    +|+|.++|.++. .+.....+.+| +.|+|+||++.  +.|       
T Consensus        35 GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~-~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Q  113 (539)
T COG1123          35 GEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLL-GLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQ  113 (539)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchh-cCCHHHHHHhccccEEEEecCchhhcCchhhHHHH
Confidence            5789999999999999999999999887    799999997332 12222223333 66999999975  211       


Q ss_pred             -------cccC-ChhhHHHHHHHHHHhhhh-----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           68 -------FSTL-DIQDKESVAKLVKLIDKS-----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        68 -------~~~~-~~~~~~~~~~~l~~l~~~-----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                             +... ..+..+++.++|+++++.     +.|+  +||||+|||.||+||+.+|++|+.|   |||+.||..+|
T Consensus       114 i~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaD---EPTTaLDvt~q  190 (539)
T COG1123         114 IREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIAD---EPTTALDVTTQ  190 (539)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEEC---CCccccCHHHH
Confidence                   1111 234566788888888763     2355  7999999999999999999999999   99999999998


Q ss_pred             hhcc
Q 032336          133 EKYI  136 (143)
Q Consensus       133 ~~~~  136 (143)
                      ..+.
T Consensus       191 ~qIL  194 (539)
T COG1123         191 AQIL  194 (539)
T ss_pred             HHHH
Confidence            7654

>PLN03211 ABC transporter G-25; Provisional

Probab=99.93  E-value=3.6e-26  Score=190.07  Aligned_cols=123  Identities=17%  Similarity=0.071  Sum_probs=96.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccC--CceEEEcceeehhhhccccHHHHHhhcchhccccccccccc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI--GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST---------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~---------   70 (143)
                      ++.++|+|||||||||||++|+|..+|+  +|+|.++|..+    .    ...++.++||+|+..+++..+         
T Consensus        94 Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~----~----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a  165 (659)
T PLN03211         94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKP----T----KQILKRTGFVTQDDILYPHLTVRETLVFCS  165 (659)
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEEC----c----hhhccceEEECcccccCCcCCHHHHHHHHH
Confidence            4679999999999999999999999885  89999999632    1    123456999999987653211         


Q ss_pred             -------CCh-hhHHHHHHHHHHhhhhC--------C--CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           71 -------LDI-QDKESVAKLVKLIDKSN--------G--YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        71 -------~~~-~~~~~~~~~l~~l~~~~--------~--~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                             ... +..+.++++++.+++..        .  ..+||||||||+||++|+.+|+++++|   ||++.||...+
T Consensus       166 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD---EPtsgLD~~~~  242 (659)
T PLN03211        166 LLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD---EPTSGLDATAA  242 (659)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe---CCCCCcCHHHH
Confidence                   011 22345778888887632        1  227999999999999999999999999   99999999887


Q ss_pred             hhc
Q 032336          133 EKY  135 (143)
Q Consensus       133 ~~~  135 (143)
                      ...
T Consensus       243 ~~l  245 (659)
T PLN03211        243 YRL  245 (659)
T ss_pred             HHH
Confidence            744

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=4.7e-26  Score=185.60  Aligned_cols=116  Identities=17%  Similarity=0.087  Sum_probs=91.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccccc-------C-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFST-------L-   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~~-------~-   71 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.               +.++|++|++.  ++...+       . 
T Consensus       345 Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------------~~i~~~~q~~~~~~~~~~t~~~~~~~~~  409 (530)
T PRK15064        345 GERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---------------ANIGYYAQDHAYDFENDLTLFDWMSQWR  409 (530)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc---------------eEEEEEcccccccCCCCCcHHHHHHHhc
Confidence            4578999999999999999999999999999998762               35899999863  221111       0 


Q ss_pred             -ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 -DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 -~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       .....+.+.++++.+++.    +..+  +||||||||+||||++.+|+++++|   ||++.+|...++.+
T Consensus       410 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l  477 (530)
T PRK15064        410 QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD---EPTNHMDMESIESL  477 (530)
T ss_pred             cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHH
Confidence             112234577788887652    3443  7999999999999999999999999   99999999887744

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.93  E-value=3.8e-26  Score=187.10  Aligned_cols=116  Identities=12%  Similarity=0.007  Sum_probs=88.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCCh--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDI--------   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~--------   73 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.+++.               ..++||+|++.+++..+..+        
T Consensus        33 Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~---------------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~   97 (556)
T PRK11819         33 GAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG---------------IKVGYLPQEPQLDPEKTVRENVEEGVAE   97 (556)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------------CEEEEEecCCCCCCCCcHHHHHHHhhHH
Confidence            4578999999999999999999999999999987641               24899999876543211000        


Q ss_pred             -----------------h-------------------------hHHHHHHHHHHhhhh--CCCc--CCchhHHHHHHHHH
Q 032336           74 -----------------Q-------------------------DKESVAKLVKLIDKS--NGYI--FAGMDASAVEFSKI  107 (143)
Q Consensus        74 -----------------~-------------------------~~~~~~~~l~~l~~~--~~~~--lSgGe~qrv~ia~a  107 (143)
                                       .                         ....+.++++.+++.  +..+  +||||||||+||||
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~a  177 (556)
T PRK11819         98 VKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRL  177 (556)
T ss_pred             HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHH
Confidence                             0                         012344555555552  2233  79999999999999


Q ss_pred             HhhcCCcccccCCccccchhhhhhhhhc
Q 032336          108 AVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus       108 l~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ++.+|+++|+|   ||++.||....+.+
T Consensus       178 l~~~p~vlLLD---EPt~~LD~~~~~~l  202 (556)
T PRK11819        178 LLEKPDMLLLD---EPTNHLDAESVAWL  202 (556)
T ss_pred             HhCCCCEEEEc---CCCCcCChHHHHHH
Confidence            99999999999   99999999887743

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.93  E-value=9.7e-26  Score=162.50  Aligned_cols=129  Identities=18%  Similarity=0.127  Sum_probs=99.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc--ccccc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL--VNFST---------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l--~~~~~---------   70 (143)
                      +.++.|||.||||||||+++|+|-+.|++|+|.++|.    ++.+++....+..++-|||+|..  ++..+         
T Consensus        32 g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~----dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~  107 (263)
T COG1101          32 GDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGV----DVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAE  107 (263)
T ss_pred             CceEEEEcCCCccHHHHHHHhhCccccCCceEEECce----ecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHH
Confidence            3578899999999999999999999999999999997    66777777788889999999852  21111         


Q ss_pred             -------C----ChhhHHHHHHHHHHhhh--h---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           71 -------L----DIQDKESVAKLVKLIDK--S---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        71 -------~----~~~~~~~~~~~l~~l~~--~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                             +    .....+...+-+..+++  .   ...  .+||||||.+++++|-.+.|++||||   ||++.||+...
T Consensus       108 ~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLD---EHTAALDPkta  184 (263)
T COG1101         108 SRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLD---EHTAALDPKTA  184 (263)
T ss_pred             hcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEec---chhhcCCcchH
Confidence                   1    11122333444454443  2   222  26999999999999999999999999   99999999888


Q ss_pred             hhccC
Q 032336          133 EKYIK  137 (143)
Q Consensus       133 ~~~~~  137 (143)
                      +-.|+
T Consensus       185 ~~vm~  189 (263)
T COG1101         185 EFVME  189 (263)
T ss_pred             HHHHH
Confidence            75543

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.93  E-value=9.6e-26  Score=171.06  Aligned_cols=114  Identities=13%  Similarity=0.037  Sum_probs=84.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cCC-hhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TLD-IQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~~-~~~   75 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.                 ++|++|++.+++..     ... ...
T Consensus        63 Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~-----------------i~yv~q~~~l~~~tv~enl~~~~~~~  125 (282)
T cd03291          63 GEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-----------------ISFSSQFSWIMPGTIKENIIFGVSYD  125 (282)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE-----------------EEEEeCcccccccCHHHHhhcccccC
Confidence            4578999999999999999999999999999998762                 78888887655310     000 000


Q ss_pred             HHHHHHHHHHhhh-------hC---------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           76 KESVAKLVKLIDK-------SN---------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        76 ~~~~~~~l~~l~~-------~~---------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ...+.++++.+++       ..         ...+|+||+|||+|||||+.+|+++++|   ||++.+|....+.+
T Consensus       126 ~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLD---EPt~gLD~~~~~~l  198 (282)
T cd03291         126 EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFGYLDVFTEKEI  198 (282)
T ss_pred             HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---CCCccCCHHHHHHH
Confidence            1112223332221       01         1247999999999999999999999999   99999999887744

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.93  E-value=5.5e-26  Score=186.04  Aligned_cols=116  Identities=13%  Similarity=0.034  Sum_probs=86.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD---------   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~---------   72 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.+++.               ..++||+|++.+++..+..         
T Consensus        31 Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~   95 (552)
T TIGR03719        31 GAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG---------------IKVGYLPQEPQLDPTKTVRENVEEGVAE   95 (552)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------------CEEEEEeccCCCCCCCcHHHHHHHhhHH
Confidence            4578999999999999999999999999999987641               2489999987654321100         


Q ss_pred             ------------------hhh-----------------------HHHHHHHHHHhhhh--CCCc--CCchhHHHHHHHHH
Q 032336           73 ------------------IQD-----------------------KESVAKLVKLIDKS--NGYI--FAGMDASAVEFSKI  107 (143)
Q Consensus        73 ------------------~~~-----------------------~~~~~~~l~~l~~~--~~~~--lSgGe~qrv~ia~a  107 (143)
                                        ..+                       ...+.++++.+++.  +..+  +||||||||+||||
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~a  175 (552)
T TIGR03719        96 IKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRL  175 (552)
T ss_pred             HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHH
Confidence                              000                       01233344444442  2222  79999999999999


Q ss_pred             HhhcCCcccccCCccccchhhhhhhhhc
Q 032336          108 AVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus       108 l~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      |+.+|++||+|   ||++.+|....+.+
T Consensus       176 l~~~p~lLLLD---EPt~~LD~~~~~~l  200 (552)
T TIGR03719       176 LLSKPDMLLLD---EPTNHLDAESVAWL  200 (552)
T ss_pred             HhcCCCEEEEc---CCCCCCChHHHHHH
Confidence            99999999999   99999999888743

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.93  E-value=1e-25  Score=157.24  Aligned_cols=95  Identities=17%  Similarity=0.160  Sum_probs=82.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|+++|..    +.......+++.++|++|                    
T Consensus        25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~----~~~~~~~~~~~~i~~~~q--------------------   80 (157)
T cd00267          25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKD----IAKLPLEELRRRIGYVPQ--------------------   80 (157)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEE----cccCCHHHHHhceEEEee--------------------
Confidence            35789999999999999999999999999999999963    333334456677999988                    


Q ss_pred             HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                                  +|+||+||+++|++++.+|+++++|   ||++.+|......+
T Consensus        81 ------------lS~G~~~r~~l~~~l~~~~~i~ilD---Ep~~~lD~~~~~~l  119 (157)
T cd00267          81 ------------LSGGQRQRVALARALLLNPDLLLLD---EPTSGLDPASRERL  119 (157)
T ss_pred             ------------CCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence                        8999999999999999999999999   99999998777643

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.92  E-value=5.1e-26  Score=167.33  Aligned_cols=121  Identities=15%  Similarity=0.029  Sum_probs=85.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-----ccc-cccCCh-h
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-----LVN-FSTLDI-Q   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-----l~~-~~~~~~-~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|+++|....    .     .....++.+....     +.. ...... +
T Consensus        48 Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~-----~~~~~~~~~~~tv~enl~~~~~~~~~~~~~  118 (224)
T cd03220          48 GERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS----L-----LGLGGGFNPELTGRENIYLNGRLLGLSRKE  118 (224)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEch----h-----hcccccCCCCCcHHHHHHHHHHHcCCCHHH
Confidence            4678999999999999999999999999999999996321    0     1111222221100     000 001111 2


Q ss_pred             hHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           75 DKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      ..+.+.++++.+++.   +..+  +||||+|||+||||++.+|+++++|   ||++.+|...+..
T Consensus       119 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EP~~gLD~~~~~~  180 (224)
T cd03220         119 IDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID---EVLAVGDAAFQEK  180 (224)
T ss_pred             HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHH
Confidence            234566777777653   3333  7999999999999999999999999   9999999987664

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=1.9e-25  Score=163.62  Aligned_cols=121  Identities=12%  Similarity=0.080  Sum_probs=99.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +...+++|||||||||+||+|.|++.|++|+|.++|..+    +    ...+.+|||+|.+..|++..+           
T Consensus        28 G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~----~----~~~~~rIGyLPEERGLy~k~tv~dql~yla~L   99 (300)
T COG4152          28 GEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL----S----QEIKNRIGYLPEERGLYPKMTVEDQLKYLAEL   99 (300)
T ss_pred             CeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcch----h----hhhhhhcccChhhhccCccCcHHHHHHHHHHh
Confidence            457899999999999999999999999999999999632    2    345677999999999875433           


Q ss_pred             --C-ChhhHHHHHHHHHHhhhhC---CCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           71 --L-DIQDKESVAKLVKLIDKSN---GYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        71 --~-~~~~~~~~~~~l~~l~~~~---~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                        . ..+....+..+|+++++..   ..+  +|-|.||.+.+-.+++++|++++||   |||+.||+-+++
T Consensus       100 kGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILD---EPFSGLDPVN~e  167 (300)
T COG4152         100 KGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILD---EPFSGLDPVNVE  167 (300)
T ss_pred             cCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEec---CCccCCChhhHH
Confidence              1 2244567788899887642   222  7999999999999999999999999   999999997776

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=3.6e-25  Score=152.15  Aligned_cols=123  Identities=10%  Similarity=0.051  Sum_probs=97.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc---CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-------   71 (143)
                      ++.+.|.|||||||||||..+.|.+.+   .+|+++++++    ++...  ..-++++|++||++-+|++..+       
T Consensus        28 GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~----~l~~l--Pa~qRq~GiLFQD~lLFphlsVg~Nl~fA  101 (213)
T COG4136          28 GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQ----RLDML--PAAQRQIGILFQDALLFPHLSVGQNLLFA  101 (213)
T ss_pred             CcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCe----ecccc--chhhhheeeeecccccccccccccceEEe
Confidence            467889999999999999999999976   4899999996    33332  2345779999999998865432       


Q ss_pred             ------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           72 ------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        72 ------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                            ....+..+..+|++.++.   .+.+  +|||||.||++.|+|..+|+.+++|   ||++.+|..-..
T Consensus       102 lp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD---EPFS~LD~ALR~  171 (213)
T COG4136         102 LPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLD---EPFSRLDVALRD  171 (213)
T ss_pred             cCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeC---CchhHHHHHHHH
Confidence                  123345677888888764   3333  7999999999999999999999999   999999876544

>PRK13409 putative ATPase RIL; Provisional

Probab=99.92  E-value=1.9e-25  Score=183.83  Aligned_cols=114  Identities=13%  Similarity=0.076  Sum_probs=89.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD---------   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~---------   72 (143)
                      ++.++|+||||||||||+|+|+|+++|++|+|.++                 ..++|++|++.++...++.         
T Consensus       365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-----------------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~  427 (590)
T PRK13409        365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-----------------LKISYKPQYIKPDYDGTVEDLLRSITDD  427 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-----------------eeEEEecccccCCCCCcHHHHHHHHhhh
Confidence            45789999999999999999999999999999753                 1388999987643211110         


Q ss_pred             hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           73 IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 ~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ......+.++++.+++.   ++.+  +||||||||+|||||+.+|+++|+|   ||++.||...+..+
T Consensus       428 ~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLD---EPt~~LD~~~~~~l  492 (590)
T PRK13409        428 LGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLD---EPSAHLDVEQRLAV  492 (590)
T ss_pred             cChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHH
Confidence            01122456778877653   4444  7999999999999999999999999   99999999887743

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.92  E-value=3.5e-25  Score=183.36  Aligned_cols=125  Identities=13%  Similarity=0.095  Sum_probs=98.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-------   71 (143)
                      +..++|+|||||||||||++|+|..++.   +|+|.++|..    +.   ...+++.++||+|++.+++..++       
T Consensus        51 Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~----~~---~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~  123 (617)
T TIGR00955        51 GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMP----ID---AKEMRAISAYVQQDDLFIPTLTVREHLMFQ  123 (617)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEE----CC---HHHHhhhceeeccccccCccCcHHHHHHHH
Confidence            4679999999999999999999998875   7999999963    22   24567789999999876643211       


Q ss_pred             ---------C-hhhHHHHHHHHHHhhhh---CC--------CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           72 ---------D-IQDKESVAKLVKLIDKS---NG--------YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        72 ---------~-~~~~~~~~~~l~~l~~~---~~--------~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                               . .+..+.++++++.+++.   +.        ..+||||||||+||++|+.+|+++++|   ||++.||..
T Consensus       124 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllD---EPtsgLD~~  200 (617)
T TIGR00955       124 AHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD---EPTSGLDSF  200 (617)
T ss_pred             HhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEee---CCCcchhHH
Confidence                     1 12335678888887753   11        237999999999999999999999999   999999998


Q ss_pred             hhhhcc
Q 032336          131 VQEKYI  136 (143)
Q Consensus       131 ~~~~~~  136 (143)
                      ++..++
T Consensus       201 ~~~~l~  206 (617)
T TIGR00955       201 MAYSVV  206 (617)
T ss_pred             HHHHHH
Confidence            887654

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.92  E-value=1.5e-25  Score=186.67  Aligned_cols=116  Identities=9%  Similarity=0.128  Sum_probs=91.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC-----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL-----   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~-----   71 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.+++               ++.++||+|++.+++..     ..     
T Consensus       478 Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~---------------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~  542 (659)
T TIGR00954       478 GNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA---------------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE  542 (659)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC---------------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence            467899999999999999999999999999997542               34699999998765310     00     


Q ss_pred             ----ChhhHHHHHHHHHHhhhh---C-----------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           72 ----DIQDKESVAKLVKLIDKS---N-----------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        72 ----~~~~~~~~~~~l~~l~~~---~-----------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                          .....+.+.++++.+++.   +           ...+|||||||++||||++++|+++++|   ||++.+|....+
T Consensus       543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLD---Epts~LD~~~~~  619 (659)
T TIGR00954       543 DMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILD---ECTSAVSVDVEG  619 (659)
T ss_pred             hhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCCHHHHH
Confidence                011234566777777652   1           1348999999999999999999999999   999999998876


Q ss_pred             hc
Q 032336          134 KY  135 (143)
Q Consensus       134 ~~  135 (143)
                      .+
T Consensus       620 ~l  621 (659)
T TIGR00954       620 YM  621 (659)
T ss_pred             HH
Confidence            54

>PRK13409 putative ATPase RIL; Provisional

Probab=99.92  E-value=1.6e-25  Score=184.36  Aligned_cols=127  Identities=13%  Similarity=0.115  Sum_probs=90.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEE-----------EcceeehhhhccccHH--HHHhhcchhccccccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC-----------CSNVFYLQAVHNSACR--KLTKELCDVIEDYSLVNF   68 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~-----------~~g~~~~~~~~~~~~~--~~~~~ig~V~Q~~~l~~~   68 (143)
                      +..++|+||||||||||||+|+|+++|+.|+|.           ++|.    ++.....+  .....+++.+|....++.
T Consensus        99 Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~----~l~~~~~~~~~~~~~~~~~~q~~~~~p~  174 (590)
T PRK13409         99 GKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGT----ELQNYFKKLYNGEIKVVHKPQYVDLIPK  174 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCCh----HHHHHHHHHhccCcceeecccchhhhhh
Confidence            357899999999999999999999999999997           7775    33221111  111234555554333221


Q ss_pred             ---ccCC-----hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           69 ---STLD-----IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        69 ---~~~~-----~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         .++.     .+....+.++++.+++.   ++.+  +||||+|||+||+||+.+|+++|+|   ||++.||....++.
T Consensus       175 ~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLD---EPts~LD~~~~~~l  251 (590)
T PRK13409        175 VFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD---EPTSYLDIRQRLNV  251 (590)
T ss_pred             hhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCCCHHHHHHH
Confidence               0110     12234677788888763   4444  7999999999999999999999999   99999999877643

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.92  E-value=2.4e-25  Score=182.23  Aligned_cols=116  Identities=17%  Similarity=0.049  Sum_probs=89.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc--------C-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST--------L-   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~--------~-   71 (143)
                      +..++|+|||||||||||++|+|+++|++|+|++++.     .          .++|++|++. +++..+        . 
T Consensus       348 Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~-----~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~  412 (552)
T TIGR03719       348 GGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET-----V----------KLAYVDQSRDALDPNKTVWEEISGGLD  412 (552)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc-----e----------EEEEEeCCccccCCCCcHHHHHHhhcc
Confidence            4578999999999999999999999999999988431     1          4899999863 332111        0 


Q ss_pred             --C-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 --D-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 --~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        . ......+.++++.+++.    +..+  +||||||||+||||++.+|+++|+|   ||++.+|...++.+
T Consensus       413 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l  482 (552)
T TIGR03719       413 IIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD---EPTNDLDVETLRAL  482 (552)
T ss_pred             ccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEe---CCCCCCCHHHHHHH
Confidence              0 01122355678887763    3333  7999999999999999999999999   99999999888754

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.92  E-value=6.3e-25  Score=165.24  Aligned_cols=125  Identities=17%  Similarity=0.066  Sum_probs=80.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc-ccccCCh-hhHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV-NFSTLDI-QDKESV   79 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~-~~~~~~~-~~~~~~   79 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|....   ..... ...... .+.++..+. ....... +..+.+
T Consensus        50 Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~---~~~~~-~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~  124 (264)
T PRK13546         50 GDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSV---IAISA-GLSGQL-TGIENIEFKMLCMGFKRKEIKAMT  124 (264)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeE---Eeccc-CCCCCC-cHHHHHHHHHHHcCCCHHHHHHHH
Confidence            4578999999999999999999999999999999884100   00000 000000 001100000 0001111 222334


Q ss_pred             HHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           80 AKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        80 ~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      .++++.+++.   +..+  +|+||+|||++|+|++.+|+++++|   ||++.+|...++.
T Consensus       125 ~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLD---EPt~gLD~~~~~~  181 (264)
T PRK13546        125 PKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVID---EALSVGDQTFAQK  181 (264)
T ss_pred             HHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEe---CccccCCHHHHHH
Confidence            5566665542   2333  7999999999999999999999999   9999999876653

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=4.1e-25  Score=154.52  Aligned_cols=128  Identities=13%  Similarity=0.017  Sum_probs=95.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH----HHHhhcchhccccccccc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR----KLTKELCDVIEDYSLVNF---------   68 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~----~~~~~ig~V~Q~~~l~~~---------   68 (143)
                      ++-++|-||||||||||||+|.+-|.|++|+|.+......-++....++    -.++.||||.|.....|.         
T Consensus        37 GECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvae  116 (235)
T COG4778          37 GECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAE  116 (235)
T ss_pred             ccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHh
Confidence            5678999999999999999999999999999988543111133333332    245679999997543321         


Q ss_pred             -----ccCChhhHHHHHHHHHHhhhh------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           69 -----STLDIQDKESVAKLVKLIDKS------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        69 -----~~~~~~~~~~~~~~l~~l~~~------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                           ....+....++.+++.++++.      ....+||||||||.|||.++.+-.+||||   ||++.||..+.
T Consensus       117 Pll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLD---EPTasLDa~Nr  188 (235)
T COG4778         117 PLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLD---EPTASLDATNR  188 (235)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEec---CCcccccccch
Confidence                 111233456788888888763      22337999999999999999999999999   99999987554

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.92  E-value=3.1e-25  Score=181.76  Aligned_cols=116  Identities=15%  Similarity=0.042  Sum_probs=89.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc-ccccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY-SLVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~-~l~~~~~----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.+++.     .          .++|++|++ .+++..+          
T Consensus       350 Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~  414 (556)
T PRK11819        350 GGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET-----V----------KLAYVDQSRDALDPNKTVWEEISGGLD  414 (556)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----e----------EEEEEeCchhhcCCCCCHHHHHHhhcc
Confidence            4578999999999999999999999999999988431     1          489999986 3332111          


Q ss_pred             -CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 -LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 -~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       .. ......+.++++.+++.    +..+  +||||||||+||||++.+|++|++|   ||++.+|...++.+
T Consensus       415 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l  484 (556)
T PRK11819        415 IIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD---EPTNDLDVETLRAL  484 (556)
T ss_pred             cccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHH
Confidence             00 01122345678887763    3333  7999999999999999999999999   99999999887744

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=1.9e-25  Score=159.02  Aligned_cols=122  Identities=11%  Similarity=0.111  Sum_probs=97.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhcccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYSLVNFS-----------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~~~~-----------   69 (143)
                      ++--+|||||||||||++.+|+|--+|+.|+|+++|.   .++..++..+++ ..||--||.|..|...           
T Consensus        31 Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~---~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~  107 (249)
T COG4674          31 GELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGD---TDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALN  107 (249)
T ss_pred             CeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCc---hhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhc
Confidence            3456899999999999999999999999999999993   255666555554 4599999999876211           


Q ss_pred             -----------cCChhhHHHHHHHHHHhhhhCC-----CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhh
Q 032336           70 -----------TLDIQDKESVAKLVKLIDKSNG-----YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLA  129 (143)
Q Consensus        70 -----------~~~~~~~~~~~~~l~~l~~~~~-----~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~  129 (143)
                                 ....+...+++++|..+++.+.     ..+|.||+||++|++.++++|++||+|   ||++..-.
T Consensus       108 ~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlD---EPvAGMTd  180 (249)
T COG4674         108 RDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLD---EPVAGMTD  180 (249)
T ss_pred             CCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEec---CccCCCcH
Confidence                       1234556789999999887532     227999999999999999999999999   88886544

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=7.9e-26  Score=187.72  Aligned_cols=130  Identities=14%  Similarity=0.023  Sum_probs=89.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc------------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------------   69 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.++|.....-+........+..++||+|....+...            
T Consensus        27 Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~  106 (638)
T PRK10636         27 GQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERND  106 (638)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCC
Confidence            45799999999999999999999999999999998741000000000000123456666543221100            


Q ss_pred             ------------cC-ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           70 ------------TL-DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        70 ------------~~-~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                                  .. ..+....+.++++.+++.    +..+  +||||||||+||+||+.+|++||||   ||++.||..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLD---EPtn~LD~~  183 (638)
T PRK10636        107 GHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLD---EPTNHLDLD  183 (638)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEc---CCCCcCCHH
Confidence                        00 011234677788888763    3333  7999999999999999999999999   999999998


Q ss_pred             hhhh
Q 032336          131 VQEK  134 (143)
Q Consensus       131 ~~~~  134 (143)
                      .++.
T Consensus       184 ~~~~  187 (638)
T PRK10636        184 AVIW  187 (638)
T ss_pred             HHHH
Confidence            8763

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.1e-24  Score=172.47  Aligned_cols=124  Identities=15%  Similarity=0.181  Sum_probs=94.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--------ccCCh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--------STLDI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--------~~~~~   73 (143)
                      +..+||+||||+||||++|++.+++...+|.|.++|+    ++.......+|+.||+||||..+|..        ..++.
T Consensus       564 GktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgq----dIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~A  639 (790)
T KOG0056|consen  564 GKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQ----DIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSA  639 (790)
T ss_pred             CcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCc----hHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCC
Confidence            4578999999999999999999999999999999997    66666777899999999999998732        11222


Q ss_pred             hhH-----HHHHHHHHHh-hhhC---------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           74 QDK-----ESVAKLVKLI-DKSN---------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        74 ~~~-----~~~~~~l~~l-~~~~---------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                      .++     .++.++-+++ ....         +.-+||||||||+|||++..+|.++++|   |+++-+|-.+.
T Consensus       640 sneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLD---EATSALDT~tE  710 (790)
T KOG0056|consen  640 SNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLD---EATSALDTNTE  710 (790)
T ss_pred             ChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEc---chhhhcCCccH
Confidence            111     1122222221 1111         2226999999999999999999999999   99998876443

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.3e-24  Score=155.66  Aligned_cols=125  Identities=11%  Similarity=0.087  Sum_probs=98.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc--ccCCceEEEcceeehhhhccccHHHHHh-hcchhcccccccc------ccc--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL--SLIGSNICCSNVFYLQAVHNSACRKLTK-ELCDVIEDYSLVN------FST--   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~~-~ig~V~Q~~~l~~------~~~--   70 (143)
                      ++..+|+||||||||||.++|+|.-  ++++|+|.++|+    ++...++.++++ .+..-||.|.=++      |..  
T Consensus        30 GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ge----dI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a  105 (251)
T COG0396          30 GEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGE----DILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAA  105 (251)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCc----ccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHH
Confidence            4678999999999999999999985  779999999997    556666665554 5788899986331      110  


Q ss_pred             ---------CChhhHHHHHHHHHHhhh----hCCCc---CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           71 ---------LDIQDKESVAKLVKLIDK----SNGYI---FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        71 ---------~~~~~~~~~~~~l~~l~~----~~~~~---lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                               ...+-...+.++++.+++    .++++   +||||++|.+|+++++.+|++.+||   ||.|.+|.+.-+
T Consensus       106 ~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILD---E~DSGLDIdalk  181 (251)
T COG0396         106 MNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILD---EPDSGLDIDALK  181 (251)
T ss_pred             HHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEec---CCCcCccHHHHH
Confidence                     012334567777777765    36666   6999999999999999999999999   999999986543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6e-25  Score=182.48  Aligned_cols=116  Identities=11%  Similarity=0.043  Sum_probs=89.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccccc-------C-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFST-------L-   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~~-------~-   71 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.+++.               ..++|++|+..  +....+       . 
T Consensus       338 Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~igy~~Q~~~~~l~~~~~~~~~~~~~~  402 (638)
T PRK10636        338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG---------------IKLGYFAQHQLEFLRADESPLQHLARLA  402 (638)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---------------EEEEEecCcchhhCCccchHHHHHHHhC
Confidence            4679999999999999999999999999999988641               14888888642  221100       1 


Q ss_pred             ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .......+.++++.+++.    +..+  +||||||||+||++++.+|++||||   |||+.||....+.+
T Consensus       403 ~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLD---EPt~~LD~~~~~~l  469 (638)
T PRK10636        403 PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLD---EPTNHLDLDMRQAL  469 (638)
T ss_pred             chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHH
Confidence            112234567788887762    2333  7999999999999999999999999   99999999887743

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.91  E-value=1.1e-24  Score=192.70  Aligned_cols=124  Identities=13%  Similarity=0.096  Sum_probs=96.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc---cCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS---LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST--------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~--------   70 (143)
                      +..++|+|||||||||||++|+|+.+   |++|+|.++|..    +.    ..+++.++||+|+..+++..+        
T Consensus       789 Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~----~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~  860 (1394)
T TIGR00956       789 GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRP----LD----SSFQRSIGYVQQQDLHLPTSTVRESLRFS  860 (1394)
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEE----CC----hhhhcceeeecccccCCCCCCHHHHHHHH
Confidence            45789999999999999999999997   688999999963    22    235678999999866442111        


Q ss_pred             --------CCh-hhHHHHHHHHHHhhhh---CCC------cCCchhHHHHHHHHHHhhcCC-cccccCCccccchhhhhh
Q 032336           71 --------LDI-QDKESVAKLVKLIDKS---NGY------IFAGMDASAVEFSKIAVRNVD-WDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        71 --------~~~-~~~~~~~~~l~~l~~~---~~~------~lSgGe~qrv~ia~al~~~p~-~llld~~~~~~~~~~~~~  131 (143)
                              ... +..+.++++++.+++.   +..      -+||||||||+||++|+.+|+ +|++|   ||++.||...
T Consensus       861 a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLD---EPTsgLD~~~  937 (1394)
T TIGR00956       861 AYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLD---EPTSGLDSQT  937 (1394)
T ss_pred             HHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEc---CCCCCCCHHH
Confidence                    111 2235678888888763   322      379999999999999999997 99999   9999999988


Q ss_pred             hhhcc
Q 032336          132 QEKYI  136 (143)
Q Consensus       132 ~~~~~  136 (143)
                      +..++
T Consensus       938 ~~~i~  942 (1394)
T TIGR00956       938 AWSIC  942 (1394)
T ss_pred             HHHHH
Confidence            77543

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.6e-24  Score=152.06  Aligned_cols=124  Identities=10%  Similarity=0.041  Sum_probs=93.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc-----------ccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN-----------FST   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~-----------~~~   70 (143)
                      ++.+.|.||||||||||||+|+|+.+|++|+|+++|.    .+.. ..+..++.+-|+-..+.+-.           ...
T Consensus        28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~----~i~~-~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~  102 (209)
T COG4133          28 GEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGE----PIQN-VRESYHQALLYLGHQPGIKTELTALENLHFWQRF  102 (209)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCC----CCcc-chhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence            4678899999999999999999999999999999985    2221 12224566677765554311           110


Q ss_pred             CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           71 LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        71 ~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                      ....+...+.++++.+++.   +-.+  +|.|||+||++||..+..+++-++|   ||++.+|.+.+.
T Consensus       103 ~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLD---EP~taLDk~g~a  167 (209)
T COG4133         103 HGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILD---EPFTALDKEGVA  167 (209)
T ss_pred             hCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeec---CcccccCHHHHH
Confidence            1113346788899999875   3333  7999999999999999999999999   999999987654

>PLN03073 ABC transporter F family; Provisional

Probab=99.91  E-value=1.2e-24  Score=182.20  Aligned_cols=116  Identities=14%  Similarity=0.044  Sum_probs=89.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc---------ccc-cC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV---------NFS-TL   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~---------~~~-~~   71 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.+++.               ..++|++|++...         .+. ..
T Consensus       535 Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~---------------~~igyv~Q~~~~~l~~~~~~~~~~~~~~  599 (718)
T PLN03073        535 DSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK---------------VRMAVFSQHHVDGLDLSSNPLLYMMRCF  599 (718)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc---------------eeEEEEeccccccCCcchhHHHHHHHhc
Confidence            4578999999999999999999999999999987541               2488999875210         000 01


Q ss_pred             ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .....+.+.++++.+++.    +..+  +||||||||+||||++.+|++||||   ||++.||....+.+
T Consensus       600 ~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLD---EPT~~LD~~s~~~l  666 (718)
T PLN03073        600 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLD---EPSNHLDLDAVEAL  666 (718)
T ss_pred             CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHH
Confidence            111234577788887763    3333  7999999999999999999999999   99999999877644

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.91  E-value=2.7e-24  Score=157.12  Aligned_cols=113  Identities=12%  Similarity=0.029  Sum_probs=75.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEE-EcceeehhhhccccHHHHHhhcchhccccccccc-----------c
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC-CSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----------S   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----------~   69 (143)
                      +..++|+||||||||||+++|+|+++|++|+|. ++|....              ++   +.+.+++.           .
T Consensus        13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~--------------~~---~~~~l~~~ltv~enl~~~~~   75 (213)
T PRK15177         13 HEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP--------------LG---ANSFILPGLTGEENARMMAS   75 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec--------------cc---cccccCCcCcHHHHHHHHHH
Confidence            457899999999999999999999999999997 6663210              11   11111110           0


Q ss_pred             cCChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           70 TLDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        70 ~~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      .......+..+.+.+..++.   +..+  +|+|||||+++|||++.+|+++++|   ||++.+|...++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllD---EP~~~lD~~~~~~  142 (213)
T PRK15177         76 LYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIAD---GKLYTGDNATQLR  142 (213)
T ss_pred             HcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEEC---CCCccCCHHHHHH
Confidence            00111111122222333332   3332  7999999999999999999999999   9999998877653

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.90  E-value=2.1e-24  Score=179.25  Aligned_cols=127  Identities=13%  Similarity=0.041  Sum_probs=85.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-----c------c----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-----L------V----   66 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-----l------~----   66 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.++|......+....   .+..+++++|...     +      +    
T Consensus        29 Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  105 (635)
T PRK11147         29 NERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDP---PRNVEGTVYDFVAEGIEEQAEYLKRYHDIS  105 (635)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCC---CCCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999997731000000000   0111222222110     0      0    


Q ss_pred             ------------c--------ccc-CChhhHHHHHHHHHHhhhh-CCCc--CCchhHHHHHHHHHHhhcCCcccccCCcc
Q 032336           67 ------------N--------FST-LDIQDKESVAKLVKLIDKS-NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSF  122 (143)
Q Consensus        67 ------------~--------~~~-~~~~~~~~~~~~l~~l~~~-~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~  122 (143)
                                  .        +.. ...+....+.++++.+++. +..+  +||||||||+|||||+.+|++||+|   |
T Consensus       106 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLD---E  182 (635)
T PRK11147        106 HLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLD---E  182 (635)
T ss_pred             HHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEc---C
Confidence                        0        000 0011234577788888774 3333  7999999999999999999999999   9


Q ss_pred             ccchhhhhhhhh
Q 032336          123 HLFQSLAEVQEK  134 (143)
Q Consensus       123 ~~~~~~~~~~~~  134 (143)
                      ||+.||...++.
T Consensus       183 Pt~~LD~~~~~~  194 (635)
T PRK11147        183 PTNHLDIETIEW  194 (635)
T ss_pred             CCCccCHHHHHH
Confidence            999999988763

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.90  E-value=2e-24  Score=179.39  Aligned_cols=116  Identities=16%  Similarity=0.078  Sum_probs=88.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~----------   70 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.+ |.    .+          .++|++|++. +++..+          
T Consensus       345 Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~----~~----------~i~y~~q~~~~l~~~~tv~e~l~~~~~  409 (635)
T PRK11147        345 GDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT----KL----------EVAYFDQHRAELDPEKTVMDNLAEGKQ  409 (635)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CC----Cc----------EEEEEeCcccccCCCCCHHHHHHhhcc
Confidence            3578999999999999999999999999999988 42    11          4899999753 332111          


Q ss_pred             -CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 -LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 -~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       .. ......+.++++.+++.    +..+  +||||||||+||+|++.+|++||||   ||++.+|....+.+
T Consensus       410 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLD---EPt~~LD~~~~~~l  479 (635)
T PRK11147        410 EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILD---EPTNDLDVETLELL  479 (635)
T ss_pred             cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHH
Confidence             00 11123456677776542    3333  7999999999999999999999999   99999999887643

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.90  E-value=2.1e-24  Score=190.90  Aligned_cols=127  Identities=13%  Similarity=0.078  Sum_probs=95.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc----ccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL----SLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~----~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-------   70 (143)
                      ++.++|+||||||||||||+|+|+.    +|.+|+|.++|..    +.... ...++.++||+|+..+++..+       
T Consensus        87 Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~----~~~~~-~~~r~~i~yv~Q~d~~~~~lTV~E~l~f  161 (1394)
T TIGR00956        87 GELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGIT----PEEIK-KHYRGDVVYNAETDVHFPHLTVGETLDF  161 (1394)
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEe----hHHHH-hhcCceeEEeccccccCCCCCHHHHHHH
Confidence            4679999999999999999999986    5789999999963    22111 234556999999876553211       


Q ss_pred             -------------CChhh-HHH-HHHHHHHhhhh---CCC-------cCCchhHHHHHHHHHHhhcCCcccccCCccccc
Q 032336           71 -------------LDIQD-KES-VAKLVKLIDKS---NGY-------IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLF  125 (143)
Q Consensus        71 -------------~~~~~-~~~-~~~~l~~l~~~---~~~-------~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~  125 (143)
                                   ...++ .+. ++++++.+++.   +..       -+||||||||+||++|+.+|+++++|   ||++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD---EPTs  238 (1394)
T TIGR00956       162 AARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD---NATR  238 (1394)
T ss_pred             HHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe---CCCC
Confidence                         11111 122 35578887764   222       27999999999999999999999999   9999


Q ss_pred             hhhhhhhhhcc
Q 032336          126 QSLAEVQEKYI  136 (143)
Q Consensus       126 ~~~~~~~~~~~  136 (143)
                      .||...+.+++
T Consensus       239 gLD~~~~~~i~  249 (1394)
T TIGR00956       239 GLDSATALEFI  249 (1394)
T ss_pred             CcCHHHHHHHH
Confidence            99998887544

>PLN03140 ABC transporter G family member; Provisional

Probab=99.90  E-value=5e-24  Score=188.76  Aligned_cols=125  Identities=12%  Similarity=0.028  Sum_probs=96.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc--CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL--IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST---------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~---------   70 (143)
                      +..++|+|||||||||||++|+|..++  .+|+|.++|.    +..   ....++.+|||+|+..+++..+         
T Consensus       906 Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~----~~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a  978 (1470)
T PLN03140        906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF----PKK---QETFARISGYCEQNDIHSPQVTVRESLIYSA  978 (1470)
T ss_pred             CeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCc----cCC---hHHhhhheEEEccccccCCCCcHHHHHHHHH
Confidence            457899999999999999999999763  6899999995    221   1235567999999976543211         


Q ss_pred             -------CC-hhhHHHHHHHHHHhhhh---CCC-------cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           71 -------LD-IQDKESVAKLVKLIDKS---NGY-------IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        71 -------~~-~~~~~~~~~~l~~l~~~---~~~-------~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                             .. .+..+.++++++.+++.   +..       -+||||||||+||++|+.+|++|++|   ||++.||...+
T Consensus       979 ~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LD---EPTsgLD~~~a 1055 (1470)
T PLN03140        979 FLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMD---EPTSGLDARAA 1055 (1470)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEe---CCCCCCCHHHH
Confidence                   11 12234578888888763   332       37999999999999999999999999   99999999887


Q ss_pred             hhcc
Q 032336          133 EKYI  136 (143)
Q Consensus       133 ~~~~  136 (143)
                      ..++
T Consensus      1056 ~~v~ 1059 (1470)
T PLN03140       1056 AIVM 1059 (1470)
T ss_pred             HHHH
Confidence            7543

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.90  E-value=9e-24  Score=170.38  Aligned_cols=121  Identities=17%  Similarity=0.011  Sum_probs=84.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccc-----ccccc-cccCCh-h
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIED-----YSLVN-FSTLDI-Q   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~-----~~l~~-~~~~~~-~   74 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.++|....   ...       ..++.++.     ..+.. ...... +
T Consensus        50 GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~---i~~-------~~~l~~~lTV~EnL~l~~~~~~~~~~e  119 (549)
T PRK13545         50 GEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL---IAI-------SSGLNGQLTGIENIELKGLMMGLTKEK  119 (549)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee---EEe-------ccccCCCCcHHHHHHhhhhhcCCCHHH
Confidence            4678999999999999999999999999999999985210   000       01111110     00000 011111 2


Q ss_pred             hHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           75 DKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ..+.+.++++.+++.   +..+  +||||+|||+|||||+.+|+++++|   ||++.+|......+
T Consensus       120 ~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD---EPTsgLD~~sr~~L  182 (549)
T PRK13545        120 IKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID---EALSVGDQTFTKKC  182 (549)
T ss_pred             HHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE---CCcccCCHHHHHHH
Confidence            234566777777653   3333  7999999999999999999999999   99999999876643

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.90  E-value=1.3e-23  Score=155.96  Aligned_cols=126  Identities=10%  Similarity=-0.029  Sum_probs=92.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhc-ccccccccccC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVI-EDYSLVNFSTL---------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~-Q~~~l~~~~~~---------   71 (143)
                      +..++++|||||||||+||+|+|++.|++|.|.++|.+.   .  ...++.-+++++|+ |...+.|....         
T Consensus        50 G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~P---f--~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~  124 (325)
T COG4586          50 GEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDP---F--RRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKL  124 (325)
T ss_pred             CcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCc---c--hhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHH
Confidence            356899999999999999999999999999999999621   1  12233445677765 55555543221         


Q ss_pred             ----Ch-hhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ----DI-QDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ----~~-~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          .. +=.++.....+.+++.   +..  -+|.|||.|+.+|.+|.+.|++|+||   |||-+||...+.++
T Consensus       125 Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLD---EpTvgLDV~aq~~i  195 (325)
T COG4586         125 IYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLD---EPTVGLDVNAQANI  195 (325)
T ss_pred             HHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEec---CCccCcchhHHHHH
Confidence                11 1123444555555553   222  27999999999999999999999999   99999999888754

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.6e-23  Score=163.01  Aligned_cols=125  Identities=14%  Similarity=0.132  Sum_probs=95.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--------ccCCh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--------STLDI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--------~~~~~   73 (143)
                      +..++++||+|+||||+++++.+++.+.+|.|.++|+    +++...-..+|+.||.|||+..||..        .....
T Consensus       289 g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~q----dir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~a  364 (497)
T COG5265         289 GKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQ----DIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDA  364 (497)
T ss_pred             ccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcch----hHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccc
Confidence            4679999999999999999999999999999999996    66666667899999999999998831        11111


Q ss_pred             hhHHHHHHHHHHhh-----------hh----CCC-cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           74 QDKESVAKLVKLID-----------KS----NGY-IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        74 ~~~~~~~~~l~~l~-----------~~----~~~-~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      . .+.+..+.+...           +.    .++ .+||||||||+|||++..+|++|++|   |+++-||-.+...
T Consensus       365 t-~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~d---eatsaldt~te~~  437 (497)
T COG5265         365 T-AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILD---EATSALDTHTEQA  437 (497)
T ss_pred             c-HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEe---hhhhHhhhhHHHH
Confidence            1 112222222221           11    122 26999999999999999999999999   9999998765543

>PLN03130 ABC transporter C family member; Provisional

Probab=99.90  E-value=7.4e-24  Score=189.32  Aligned_cols=115  Identities=17%  Similarity=0.128  Sum_probs=89.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCC-ceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG-SNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~~~   74 (143)
                      +..++|+||+|||||||+++|.|.++|++ |+|.+.                 ..++||+|++.+|.-     ... .+.
T Consensus       643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~-----------------~~Iayv~Q~p~LfngTIreNI~fg~~~  705 (1622)
T PLN03130        643 GSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR-----------------GTVAYVPQVSWIFNATVRDNILFGSPF  705 (1622)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc-----------------CeEEEEcCccccCCCCHHHHHhCCCcc
Confidence            46799999999999999999999999999 899743                 349999999998731     111 122


Q ss_pred             hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      +.++..++++.+++       .         .+..+||||||||+||||+..+|++++||   ||++.+|..+.++++
T Consensus       706 d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLD---EptSALD~~~~~~I~  780 (1622)
T PLN03130        706 DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFD---DPLSALDAHVGRQVF  780 (1622)
T ss_pred             cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEEC---CCccccCHHHHHHHH
Confidence            34455566655432       1         12237999999999999999999999999   999999998877654

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.89  E-value=9.8e-24  Score=150.09  Aligned_cols=100  Identities=12%  Similarity=0.003  Sum_probs=76.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      +..++|+|||||||||||+++.    +++|++.+++.     ....    .+..++|++|                  .+
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~-----~~~~----~~~~~~~~~q------------------~~   69 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGL----YASGKARLISF-----LPKF----SRNKLIFIDQ------------------LQ   69 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCc-----cccc----ccccEEEEhH------------------HH
Confidence            3578999999999999999985    37899998773     1111    1234667665                  34


Q ss_pred             HHHHhhhh----CCC--cCCchhHHHHHHHHHHhhc--CCcccccCCccccchhhhhhhhhc
Q 032336           82 LVKLIDKS----NGY--IFAGMDASAVEFSKIAVRN--VDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        82 ~l~~l~~~----~~~--~lSgGe~qrv~ia~al~~~--p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +++.+++.    +..  .+|+||+||+++|||++.+  |+++++|   ||++.+|....+.+
T Consensus        70 ~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlD---EPt~~LD~~~~~~l  128 (176)
T cd03238          70 FLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILD---EPSTGLHQQDINQL  128 (176)
T ss_pred             HHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEe---CCcccCCHHHHHHH
Confidence            56666642    222  2799999999999999999  9999999   99999999887743

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.89  E-value=9.4e-24  Score=187.97  Aligned_cols=116  Identities=16%  Similarity=0.110  Sum_probs=89.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-Chhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-DIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~~~~   75 (143)
                      +..++|+||+|||||||+++|.|+++|++|.+.                .+++.++||+|++.+|.-     ... .+.+
T Consensus       643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~----------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~  706 (1495)
T PLN03232        643 GSLVAIVGGTGEGKTSLISAMLGELSHAETSSV----------------VIRGSVAYVPQVSWIFNATVRENILFGSDFE  706 (1495)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE----------------EecCcEEEEcCccccccccHHHHhhcCCccC
Confidence            467999999999999999999999999998763                134569999999998731     111 1223


Q ss_pred             HHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           76 KESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        76 ~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .++..++++.+++       .         .+..+|||||||++||||+..+|++++||   ||++.+|..+.++++
T Consensus       707 ~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLD---EptSaLD~~t~~~I~  780 (1495)
T PLN03232        707 SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFD---DPLSALDAHVAHQVF  780 (1495)
T ss_pred             HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEc---CCccccCHHHHHHHH
Confidence            4455556655432       1         12237999999999999999999999999   999999998877554

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.89  E-value=2.3e-23  Score=185.70  Aligned_cols=116  Identities=15%  Similarity=0.138  Sum_probs=87.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--------c-cCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--------S-TLD   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--------~-~~~   72 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|                 .++||+|++.++..        . ...
T Consensus       664 G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------------~i~yv~Q~~~l~~~Ti~eNI~~g~~~~  726 (1522)
T TIGR00957       664 GALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-----------------SVAYVPQQAWIQNDSLRENILFGKALN  726 (1522)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-----------------EEEEEcCCccccCCcHHHHhhcCCccC
Confidence            457899999999999999999999999999999876                 28999999887621        1 111


Q ss_pred             hhhHHHHHHHH---HHhhhh----------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336           73 IQDKESVAKLV---KLIDKS----------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK  137 (143)
Q Consensus        73 ~~~~~~~~~~l---~~l~~~----------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~  137 (143)
                      ++..+.+.++.   +.++..          ....+||||||||+||||+..+|+++++|   ||++.+|..+.+++++
T Consensus       727 ~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLD---Ep~saLD~~~~~~i~~  801 (1522)
T TIGR00957       727 EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD---DPLSAVDAHVGKHIFE  801 (1522)
T ss_pred             HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc---CCccccCHHHHHHHHH
Confidence            22222222221   222221          12237999999999999999999999999   9999999988876543

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.89  E-value=2.7e-23  Score=184.91  Aligned_cols=116  Identities=13%  Similarity=0.090  Sum_probs=87.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cCC-hhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TLD-IQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~~-~~~   75 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.++|.                 ++||+|++.+++..     .+. ..+
T Consensus       452 G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~-----------------iayv~Q~~~l~~~Ti~eNI~~g~~~~  514 (1490)
T TIGR01271       452 GQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR-----------------ISFSPQTSWIMPGTIKDNIIFGLSYD  514 (1490)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE-----------------EEEEeCCCccCCccHHHHHHhccccc
Confidence            3578999999999999999999999999999998772                 89999998876310     000 111


Q ss_pred             HHHHHHHHHH------hhh---h-------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336           76 KESVAKLVKL------IDK---S-------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK  137 (143)
Q Consensus        76 ~~~~~~~l~~------l~~---~-------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~  137 (143)
                      .+...++++.      ++.   .       ....+||||||||+||||++.+|+++|||   ||++.+|..+.+++++
T Consensus       515 ~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLD---ep~saLD~~~~~~i~~  589 (1490)
T TIGR01271       515 EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFTHLDVVTEKEIFE  589 (1490)
T ss_pred             hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHHHH
Confidence            1112222222      111   1       12347999999999999999999999999   9999999998887654

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.89  E-value=1.1e-23  Score=186.48  Aligned_cols=125  Identities=14%  Similarity=0.075  Sum_probs=94.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-------   71 (143)
                      +..++|+||||||||||||+|+|.++|+   +|+|.++|..    +....   .++.++||+|+..+++..++       
T Consensus       191 Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~----~~~~~---~~~~i~yv~Q~d~~~~~lTV~EtL~f~  263 (1470)
T PLN03140        191 SRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYR----LNEFV---PRKTSAYISQNDVHVGVMTVKETLDFS  263 (1470)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEe----chhhc---ccceeEEecccccCCCcCcHHHHHHHH
Confidence            4678999999999999999999999998   9999999963    22211   24679999998765432110       


Q ss_pred             ----------------Chhh-------------------------HHHHHHHHHHhhhhC--------CC--cCCchhHH
Q 032336           72 ----------------DIQD-------------------------KESVAKLVKLIDKSN--------GY--IFAGMDAS  100 (143)
Q Consensus        72 ----------------~~~~-------------------------~~~~~~~l~~l~~~~--------~~--~lSgGe~q  100 (143)
                                      ...+                         ...++++++.+++..        ..  -+||||||
T Consensus       264 a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerk  343 (1470)
T PLN03140        264 ARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKK  343 (1470)
T ss_pred             HHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccce
Confidence                            0000                         012356777777642        22  27999999


Q ss_pred             HHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336          101 AVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus       101 rv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ||.||++++.+|+++++|   ||++.||...+..++
T Consensus       344 RVsia~aL~~~p~vlllD---EPTsGLDs~t~~~i~  376 (1470)
T PLN03140        344 RVTTGEMIVGPTKTLFMD---EISTGLDSSTTYQIV  376 (1470)
T ss_pred             eeeehhhhcCCCcEEEEe---CCCcCccHHHHHHHH
Confidence            999999999999999999   999999998887554

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.89  E-value=4.3e-24  Score=154.45  Aligned_cols=118  Identities=13%  Similarity=0.161  Sum_probs=85.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCc---------eEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChh
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGS---------NICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQ   74 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G---------~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~   74 (143)
                      .++|+||||||||||+++|++++++..|         ++.+.|.    +...   ...++.+++|||++..+ +.   ..
T Consensus        24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~v~~vfq~~~~~-~~---~~   92 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGS----ETRK---PANFAEVTLTFDNSDGR-YS---II   92 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCC----CCCC---CCceEEEEEEEEcCCCc-ee---EE
Confidence            5789999999999999999999866533         4555553    2111   12346799999998865 21   11


Q ss_pred             hHHHHHHHHHHhhhhCCCc--CCchhHHHHHHHHHHh----hcCCcccccCCccccchhhhhhhhhc
Q 032336           75 DKESVAKLVKLIDKSNGYI--FAGMDASAVEFSKIAV----RNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~~~~~--lSgGe~qrv~ia~al~----~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ..+.+.++++..+..+..+  +|+||+||+++|++++    ..|+++++|   ||++.+|...++.+
T Consensus        93 ~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlD---EP~~~LD~~~~~~l  156 (197)
T cd03278          93 SQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLD---EVDAALDDANVERF  156 (197)
T ss_pred             ehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEe---CCcccCCHHHHHHH
Confidence            2345666666633333333  7999999999999997    456999999   99999998877754

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=3.9e-23  Score=170.72  Aligned_cols=122  Identities=17%  Similarity=0.111  Sum_probs=98.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc---CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST--------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~--------   70 (143)
                      ++.+||+||+||||||||++|+|....   .+|+|.+||+    .   ...+..++..|||.|+..+++..+        
T Consensus        56 Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~----~---~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~  128 (613)
T KOG0061|consen   56 GELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR----P---RDSRSFRKISGYVQQDDVLLPTLTVRETLRFS  128 (613)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc----c---CchhhhhheeEEEcccccccccccHHHHHHHH
Confidence            467899999999999999999999864   6899999994    1   234567788999999988764322        


Q ss_pred             -----C---C-hhhHHHHHHHHHHhhhh---CCC-------cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           71 -----L---D-IQDKESVAKLVKLIDKS---NGY-------IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        71 -----~---~-~~~~~~~~~~l~~l~~~---~~~-------~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                           .   . .+..++++++++.+++.   +..       -.|||||+||+||.-++.+|.+|++|   |||+.||--.
T Consensus       129 A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflD---EPTSGLDS~s  205 (613)
T KOG0061|consen  129 ALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLD---EPTSGLDSFS  205 (613)
T ss_pred             HHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEec---CCCCCcchhh
Confidence                 1   1 34567899999998763   222       26999999999999999999999999   9999999766


Q ss_pred             hh
Q 032336          132 QE  133 (143)
Q Consensus       132 ~~  133 (143)
                      +.
T Consensus       206 A~  207 (613)
T KOG0061|consen  206 AL  207 (613)
T ss_pred             HH
Confidence            54

>PTZ00243 ABC transporter; Provisional

Probab=99.88  E-value=8.3e-23  Score=182.28  Aligned_cols=115  Identities=20%  Similarity=0.232  Sum_probs=85.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c-CChhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T-LDIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~-~~~~~   75 (143)
                      +..++|+|||||||||||++|+|+++|++|+|.+.                 +.++|++|++.++...     . ....+
T Consensus       686 G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-----------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~  748 (1560)
T PTZ00243        686 GKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-----------------RSIAYVPQQAWIMNATVRGNILFFDEED  748 (1560)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----------------CeEEEEeCCCccCCCcHHHHHHcCChhh
Confidence            35789999999999999999999999999999742                 3489999998875310     0 11112


Q ss_pred             HHHHHHHHH---------Hh--hhh-----CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           76 KESVAKLVK---------LI--DKS-----NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        76 ~~~~~~~l~---------~l--~~~-----~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .+...++++         .+  ++.     ....+||||||||+||||++.+|++++||   ||++.+|..+.++++
T Consensus       749 ~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLD---EP~saLD~~~~~~i~  822 (1560)
T PTZ00243        749 AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLD---DPLSALDAHVGERVV  822 (1560)
T ss_pred             HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc---CccccCCHHHHHHHH
Confidence            222223322         22  111     22337999999999999999999999999   999999988776544

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.88  E-value=6.2e-23  Score=166.47  Aligned_cols=114  Identities=11%  Similarity=-0.021  Sum_probs=84.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD---------   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~---------   72 (143)
                      +..+||||+||||||||||+|+|...|++|+|...+.               -+++|++|++.+....++.         
T Consensus        29 G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~---------------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~   93 (530)
T COG0488          29 GERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG---------------LRVGYLSQEPPLDPEKTVLDYVIEGFGE   93 (530)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC---------------ceEEEeCCCCCcCCCccHHHHHHhhhHH
Confidence            4578999999999999999999999999999986541               1378888887754211100         


Q ss_pred             -----------------------------------hhhHHHHHHHHHHhhhh--CCCc--CCchhHHHHHHHHHHhhcCC
Q 032336           73 -----------------------------------IQDKESVAKLVKLIDKS--NGYI--FAGMDASAVEFSKIAVRNVD  113 (143)
Q Consensus        73 -----------------------------------~~~~~~~~~~l~~l~~~--~~~~--lSgGe~qrv~ia~al~~~p~  113 (143)
                                                         -+...++..++..++..  +..+  +|||||.||++|+||..+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pD  173 (530)
T COG0488          94 LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPD  173 (530)
T ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCC
Confidence                                               00012333344444433  2233  79999999999999999999


Q ss_pred             cccccCCccccchhhhhhhh
Q 032336          114 WDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus       114 ~llld~~~~~~~~~~~~~~~  133 (143)
                      +||||   |||-.||.+..+
T Consensus       174 lLLLD---EPTNHLD~~~i~  190 (530)
T COG0488         174 LLLLD---EPTNHLDLESIE  190 (530)
T ss_pred             EEEEc---CCCcccCHHHHH
Confidence            99999   999999997765

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.88  E-value=1.7e-22  Score=175.86  Aligned_cols=125  Identities=12%  Similarity=0.113  Sum_probs=104.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc------cccCChhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN------FSTLDIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~------~~~~~~~~   75 (143)
                      ++++||+|..|||||||..+|-++..|.+|+|.+||.    ++......++|++++++||+|.+|.      ..+..+-.
T Consensus      1166 ~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgv----dI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~s 1241 (1381)
T KOG0054|consen 1166 GEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGV----DISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYS 1241 (1381)
T ss_pred             CceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCe----ecccccHHHHHhcCeeeCCCCceecCccccccCcccccC
Confidence            5789999999999999999999999999999999997    6677889999999999999999982      11222333


Q ss_pred             HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                      ++.+-++|+.+++.                .+.-+|-||||.+++||||..++++|++|   |+|+..|.++..
T Consensus      1242 D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLD---EATAsVD~~TD~ 1312 (1381)
T KOG0054|consen 1242 DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLD---EATASVDPETDA 1312 (1381)
T ss_pred             HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEe---cccccCChHHHH
Confidence            45667777776541                12225889999999999999999999999   999999987654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.87  E-value=1.3e-22  Score=157.56  Aligned_cols=128  Identities=14%  Similarity=0.149  Sum_probs=99.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHH---HH-hhcchhccccc--cccc--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRK---LT-KELCDVIEDYS--LVNF--   68 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~---~~-~~ig~V~Q~~~--l~~~--   68 (143)
                      ++.+||+|.||||||-..+.++++++.     .+|+|.|+|.    ++-..+.++   +| .+|+++||+|.  |.|.  
T Consensus        36 GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~----dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~t  111 (534)
T COG4172          36 GETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGE----DLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHT  111 (534)
T ss_pred             CCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcCh----hhhcCCHHHHhhhcccceEEEecccccccCcHhH
Confidence            578999999999999999999999854     3789999997    333334333   33 46999999986  2222  


Q ss_pred             ------------ccCC-hhhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchh
Q 032336           69 ------------STLD-IQDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQS  127 (143)
Q Consensus        69 ------------~~~~-~~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~  127 (143)
                                  ...+ .+..+++.++|+.+++.      +.|+  +||||+|||.||+||+.+|++|+-|   |||+-|
T Consensus       112 Ig~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIAD---EPTTAL  188 (534)
T COG4172         112 IGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIAD---EPTTAL  188 (534)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeec---CCcchh
Confidence                        1222 34467788888888863      4444  7999999999999999999999999   999999


Q ss_pred             hhhhhhhcc
Q 032336          128 LAEVQEKYI  136 (143)
Q Consensus       128 ~~~~~~~~~  136 (143)
                      |.-+|-.+.
T Consensus       189 DVtvQaQIL  197 (534)
T COG4172         189 DVTVQAQIL  197 (534)
T ss_pred             hhhhHHHHH
Confidence            998887553

>PLN03073 ABC transporter F family; Provisional

Probab=99.87  E-value=3.2e-22  Score=167.72  Aligned_cols=131  Identities=13%  Similarity=-0.017  Sum_probs=86.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc---ccCCceEEEcceeeh-hhhcc--------c-cHHHHHhhcchhccccccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL---SLIGSNICCSNVFYL-QAVHN--------S-ACRKLTKELCDVIEDYSLVNF   68 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~---~~~~G~i~~~g~~~~-~~~~~--------~-~~~~~~~~ig~V~Q~~~l~~~   68 (143)
                      +..+||+||||||||||||+|+|..   .|++|+|.+.++... .+...        . ....++..+++++|++.+...
T Consensus       203 Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~  282 (718)
T PLN03073        203 GRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE  282 (718)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3579999999999999999999864   578899976443210 01000        0 011234558888887543210


Q ss_pred             -----------ccCC-hhh-------------------HHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhc
Q 032336           69 -----------STLD-IQD-------------------KESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRN  111 (143)
Q Consensus        69 -----------~~~~-~~~-------------------~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~  111 (143)
                                 .... .+.                   ..++.+++..+++.    +..+  +||||+|||+||+||+.+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~  362 (718)
T PLN03073        283 TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIE  362 (718)
T ss_pred             ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence                       0001 111                   12334444444442    2333  799999999999999999


Q ss_pred             CCcccccCCccccchhhhhhhhhc
Q 032336          112 VDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus       112 p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      |++||||   ||++.||....+.+
T Consensus       363 p~lLlLD---EPt~~LD~~~~~~l  383 (718)
T PLN03073        363 PDLLLLD---EPTNHLDLHAVLWL  383 (718)
T ss_pred             CCEEEEE---CCCCCCCHHHHHHH
Confidence            9999999   99999999887644

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=5e-22  Score=139.76  Aligned_cols=132  Identities=14%  Similarity=0.086  Sum_probs=94.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceee-hhhh---ccccHHH-HHhhcchhccccc--cc----c---
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFY-LQAV---HNSACRK-LTKELCDVIEDYS--LV----N---   67 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~-~~~~---~~~~~~~-~~~~ig~V~Q~~~--l~----~---   67 (143)
                      ++-++|+|.|||||||||+||++-+.|++|+|.+.-..- ..++   +....+. +|...|+|.|+|.  +-    .   
T Consensus        32 GeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~N  111 (258)
T COG4107          32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGN  111 (258)
T ss_pred             CcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCc
Confidence            356899999999999999999999999999998743210 0012   2222222 3456999999975  11    0   


Q ss_pred             ----cccCCh----hhHHHHHHHHHHhhhh-----C-CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           68 ----FSTLDI----QDKESVAKLVKLIDKS-----N-GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        68 ----~~~~~~----~~~~~~~~~l~~l~~~-----~-~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                          .+....    +-.+.+.++|+++++.     + ...+|||.|||+.|||-|+..|++.|+|   ||+-.+|..+|-
T Consensus       112 iGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMD---EPTGGLDVSVQA  188 (258)
T COG4107         112 IGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMD---EPTGGLDVSVQA  188 (258)
T ss_pred             cchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEec---CCCCCcchhhHH
Confidence                000111    2234567788888763     2 2237999999999999999999999999   999999999987


Q ss_pred             hcc
Q 032336          134 KYI  136 (143)
Q Consensus       134 ~~~  136 (143)
                      +..
T Consensus       189 RLL  191 (258)
T COG4107         189 RLL  191 (258)
T ss_pred             HHH
Confidence            654

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.85  E-value=5.2e-22  Score=139.63  Aligned_cols=123  Identities=13%  Similarity=0.124  Sum_probs=92.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cc-----ccccC---C
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LV-----NFSTL---D   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~-----~~~~~---~   72 (143)
                      ++.+-+||||||||||||..++|+. |.+|+|.++|.    ++..++..+++++.+|+.|+.. .|     .+.+.   .
T Consensus        25 Ge~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~----~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~   99 (248)
T COG4138          25 GEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQ----PLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPD   99 (248)
T ss_pred             ceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCc----chhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCch
Confidence            4567799999999999999999997 68899999996    7777888899999999988743 22     12222   2


Q ss_pred             hhhHHHHHHHHHHhhhhCCC---c--CCchhHHHHHHHHHHhh-------cCCcccccCCccccchhhhhhh
Q 032336           73 IQDKESVAKLVKLIDKSNGY---I--FAGMDASAVEFSKIAVR-------NVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        73 ~~~~~~~~~~l~~l~~~~~~---~--lSgGe~qrv~ia~al~~-------~p~~llld~~~~~~~~~~~~~~  132 (143)
                      ++....+.++...+++.+..   .  +||||.|||.+|....+       ..++|++|   ||++.+|..-+
T Consensus       100 ~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD---EP~~~LDvAQ~  168 (248)
T COG4138         100 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD---EPMNSLDVAQQ  168 (248)
T ss_pred             HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEec---CCCcchhHHHH
Confidence            23334455555555553322   2  69999999999988876       33699999   99999987543

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.84  E-value=1.5e-20  Score=137.79  Aligned_cols=121  Identities=15%  Similarity=0.032  Sum_probs=88.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc------ccccC-Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV------NFSTL-DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~------~~~~~-~~~   74 (143)
                      +..++|||+||||||||||+|+|.++|++|+|.+.|..-     .    -+.-..|+-||-...-      .+... .++
T Consensus        53 Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~-----~----li~lg~Gf~pelTGreNi~l~~~~~G~~~~e  123 (249)
T COG1134          53 GERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA-----P----LIELGAGFDPELTGRENIYLRGLILGLTRKE  123 (249)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEe-----h----hhhcccCCCcccchHHHHHHHHHHhCccHHH
Confidence            467999999999999999999999999999999999521     0    0112245444433211      11122 235


Q ss_pred             hHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           75 DKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      ..+.++++.+..++.   +.++  +|-|.+-|++++-|...+|++|++|   |-++=-|...++|
T Consensus       124 i~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllD---EvlavGD~~F~~K  185 (249)
T COG1134         124 IDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLD---EVLAVGDAAFQEK  185 (249)
T ss_pred             HHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEe---hhhhcCCHHHHHH
Confidence            566778888776652   4444  6889999999999999999999999   8888777777764

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.83  E-value=2.9e-21  Score=143.22  Aligned_cols=125  Identities=16%  Similarity=0.119  Sum_probs=78.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHh----------------CCcccCCc--------eEEEcceeehhhhccccHHHHHhhcch
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS----------------QFLSLIGS--------NICCSNVFYLQAVHNSACRKLTKELCD   58 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~----------------g~~~~~~G--------~i~~~g~~~~~~~~~~~~~~~~~~ig~   58 (143)
                      ..++|+||||||||||+++|+                +++.+.+|        +|.+++..-...... ....+++.+++
T Consensus        24 ~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~-~~~~i~r~ig~  102 (243)
T cd03272          24 KHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDK-EEVRLRRTIGL  102 (243)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCC-CEEEEEEEEEC
Confidence            368899999999999999998                44555566        555544200000000 01123456888


Q ss_pred             hcccccccccccCChhhHHHHHHHHHHhhh-----------------------h--CCCcCCchhHHHHHHHHHHhh---
Q 032336           59 VIEDYSLVNFSTLDIQDKESVAKLVKLIDK-----------------------S--NGYIFAGMDASAVEFSKIAVR---  110 (143)
Q Consensus        59 V~Q~~~l~~~~~~~~~~~~~~~~~l~~l~~-----------------------~--~~~~lSgGe~qrv~ia~al~~---  110 (143)
                      ++|++.++... ...   +.+..++..+++                       .  ....+||||+||++||+|++.   
T Consensus       103 ~~~~~~l~~~~-~t~---~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~  178 (243)
T cd03272         103 KKDEYFLDKKN-VTK---NDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKC  178 (243)
T ss_pred             CCCEEEECCeE-cCH---HHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhcc
Confidence            88876654211 111   112222222221                       1  112279999999999999974   


Q ss_pred             -cCCcccccCCccccchhhhhhhhhc
Q 032336          111 -NVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus       111 -~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       +|+++++|   ||++.+|....+.+
T Consensus       179 ~~~~illlD---Ep~~~ld~~~~~~~  201 (243)
T cd03272         179 DPAPFYLFD---EIDAALDAQYRTAV  201 (243)
T ss_pred             CCCCEEEEE---CCccCCCHHHHHHH
Confidence             58999999   99999999887754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.83  E-value=2.5e-20  Score=144.63  Aligned_cols=124  Identities=14%  Similarity=0.103  Sum_probs=101.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc--CChhhHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST--LDIQDKESV   79 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~--~~~~~~~~~   79 (143)
                      ++.+.|+|.|||||||+++++.|+++|++|+|+++|+    +++..+..+-|+-++-||-|..+|....  ......+.+
T Consensus       349 GelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~----pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i  424 (546)
T COG4615         349 GELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK----PVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLI  424 (546)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCc----cCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHH
Confidence            4678899999999999999999999999999999996    6677788888888999999999885321  122345678


Q ss_pred             HHHHHHhhhh------CCCc----CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           80 AKLVKLIDKS------NGYI----FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        80 ~~~l~~l~~~------~~~~----lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                      +..|+++.++      ++..    +|-|||+|+++--|+..+-+++++|   |=-+++|+...
T Consensus       425 ~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~D---EWAADQDPaFR  484 (546)
T COG4615         425 EKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLD---EWAADQDPAFR  484 (546)
T ss_pred             HHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEee---hhhccCChHHH
Confidence            8888888764      2222    5899999999999999999999999   66677776554

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.82  E-value=2.1e-20  Score=151.81  Aligned_cols=114  Identities=13%  Similarity=0.068  Sum_probs=88.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc-------CC-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST-------LD-   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~-------~~-   72 (143)
                      +..+||+||||+|||||||+|+|...|.+|+|.+...               -.+||+.|+.. +....+       .. 
T Consensus       348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~---------------v~igyf~Q~~~~l~~~~t~~d~l~~~~~  412 (530)
T COG0488         348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET---------------VKIGYFDQHRDELDPDKTVLEELSEGFP  412 (530)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc---------------eEEEEEEehhhhcCccCcHHHHHHhhCc
Confidence            3578999999999999999999999999999986531               13788888863 221111       11 


Q ss_pred             hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           73 IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        73 ~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                      ......++..|..++..    ...+  +|||||.|+.+|+.+..+|.+|+||   |||-.||.+..+
T Consensus       413 ~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLD---EPTNhLDi~s~~  476 (530)
T COG0488         413 DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLD---EPTNHLDIESLE  476 (530)
T ss_pred             cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEc---CCCccCCHHHHH
Confidence            11145677788887652    2333  8999999999999999999999999   999999988766

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.82  E-value=3e-20  Score=159.02  Aligned_cols=125  Identities=14%  Similarity=0.080  Sum_probs=97.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------------
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------------   70 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------------   70 (143)
                      +..+++|||||||||++++|.|..+|++|+++++|..+.   ......+.++.+||.||+..++...+            
T Consensus       592 ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~---~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr  668 (885)
T KOG0059|consen  592 ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDIT---VSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR  668 (885)
T ss_pred             ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccc---cccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc
Confidence            567899999999999999999999999999999886322   12233457788999999977653222            


Q ss_pred             -CChhh-HHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           71 -LDIQD-KESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        71 -~~~~~-~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                       ....+ .+.++.+++.+++.   +..+  +|||+++|+.+|.|++.+|++++||   ||++..|+..+.
T Consensus       669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LD---EPstGmDP~arr  735 (885)
T KOG0059|consen  669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLD---EPSTGLDPKARR  735 (885)
T ss_pred             CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEec---CCCCCCCHHHHH
Confidence             22222 34567778877763   3333  6999999999999999999999999   999999986554

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.81  E-value=1.1e-20  Score=141.04  Aligned_cols=127  Identities=14%  Similarity=0.101  Sum_probs=87.9

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccC-CceEEEcceeehhhhccc--cHHHHHhhcchhccccc---------ccc----
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLI-GSNICCSNVFYLQAVHNS--ACRKLTKELCDVIEDYS---------LVN----   67 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~--~~~~~~~~ig~V~Q~~~---------l~~----   67 (143)
                      .++|+||||||||||+++|++++.++ .|++++.+.   .++-..  ........+++++|++.         +.+    
T Consensus        27 ~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~---~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV  103 (251)
T cd03273          27 FNAITGLNGSGKSNILDAICFVLGITNLSTVRASNL---QDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV  103 (251)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcccccccccccCH---HHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence            47899999999999999999999876 568877664   111110  00112346889999842         110    


Q ss_pred             -----cc----c-C--ChhhHHHHHHHHHHhhhh-----------------------CCCc--CCchhHHHHHHHHHHh-
Q 032336           68 -----FS----T-L--DIQDKESVAKLVKLIDKS-----------------------NGYI--FAGMDASAVEFSKIAV-  109 (143)
Q Consensus        68 -----~~----~-~--~~~~~~~~~~~l~~l~~~-----------------------~~~~--lSgGe~qrv~ia~al~-  109 (143)
                           ..    . .  .....+.+.++++.+++.                       +.++  +|+||+||+++|+|++ 
T Consensus       104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~  183 (251)
T cd03273         104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL  183 (251)
T ss_pred             EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence                 00    0 1  112346777888888763                       1222  6999999999999998 


Q ss_pred             ---hcCCcccccCCccccchhhhhhhhhcc
Q 032336          110 ---RNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus       110 ---~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                         .+|+++++|   ||++.++...++.+.
T Consensus       184 ~~~~~~~illlD---EPt~~ld~~~~~~~~  210 (251)
T cd03273         184 LLFKPAPMYILD---EVDAALDLSHTQNIG  210 (251)
T ss_pred             hhccCCCEEEEe---CCCcCCCHHHHHHHH
Confidence               478999999   999999988777543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.80  E-value=7.3e-20  Score=149.08  Aligned_cols=115  Identities=11%  Similarity=0.182  Sum_probs=86.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc----------ccccC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV----------NFSTL   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~----------~~~~~   71 (143)
                      +..+-|.||||||||||+|+|+|+.+..+|+|.+-..               ..+-|+||.|.+-          |....
T Consensus       419 G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~---------------~~~lflpQ~PY~p~GtLre~l~YP~~~~  483 (604)
T COG4178         419 GERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD---------------SALLFLPQRPYLPQGTLREALCYPNAAP  483 (604)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC---------------CceEEecCCCCCCCccHHHHHhCCCCCC
Confidence            4567899999999999999999999999999864310               1256778877642          11111


Q ss_pred             ChhhHHHHHHHHHHhhhh---------C--CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 DIQDKESVAKLVKLIDKS---------N--GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ~~~~~~~~~~~l~~l~~~---------~--~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      . -..+.+.++|.++++.         +  ..++|+|||||+++||.+.++|+++++|   |.|+-+|.+.+-++
T Consensus       484 ~-~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LD---EATsALDe~~e~~l  554 (604)
T COG4178         484 D-FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLD---EATSALDEETEDRL  554 (604)
T ss_pred             C-CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEe---cchhccChHHHHHH
Confidence            1 2234567777777642         2  2237999999999999999999999999   99999998776543

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.78  E-value=1.2e-19  Score=132.62  Aligned_cols=123  Identities=15%  Similarity=-0.007  Sum_probs=75.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc-ccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc----ccccCChhhHH
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL-SLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV----NFSTLDIQDKE   77 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~----~~~~~~~~~~~   77 (143)
                      ..++|+||||||||||+++|++.+ .+..+......     .............++++||+....    .......++..
T Consensus        29 ~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~-----~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~  103 (213)
T cd03279          29 GLFLICGPTGAGKSTILDAITYALYGKTPRYGRQEN-----LRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFT  103 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHheeeEecCccccccchh-----HHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHH
Confidence            478999999999999999999643 33333333211     001111123345688888886532    11111212111


Q ss_pred             HHHHHHHHh---hhhCCCc--CCchhHHHHHHHHHHhh----------cCCcccccCCccccchhhhhhhhh
Q 032336           78 SVAKLVKLI---DKSNGYI--FAGMDASAVEFSKIAVR----------NVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        78 ~~~~~l~~l---~~~~~~~--lSgGe~qrv~ia~al~~----------~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      ... .++..   ...+...  +|+||+||+++|+|++.          +|+++++|   ||++.+|....+.
T Consensus       104 ~~~-~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllD---Ep~~~lD~~~~~~  171 (213)
T cd03279         104 RIV-LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFID---EGFGTLDPEALEA  171 (213)
T ss_pred             Hhh-hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEe---CCcccCCHHHHHH
Confidence            110 12222   1223333  79999999999999985          56899999   9999999877664

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.78  E-value=2.9e-19  Score=155.90  Aligned_cols=116  Identities=16%  Similarity=0.187  Sum_probs=87.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC-Chhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL-DIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~-~~~~   75 (143)
                      +..+||+||-|||||+||..|.|.++..+|+|.++|.                 ++||+|.+.++.-.     .+ .+-+
T Consensus       547 G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-----------------iaYv~Q~pWI~ngTvreNILFG~~~d  609 (1381)
T KOG0054|consen  547 GQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-----------------VAYVPQQPWIQNGTVRENILFGSPYD  609 (1381)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-----------------EEEeccccHhhCCcHHHhhhcCcccc
Confidence            4578999999999999999999999999999999883                 89999999876210     01 1223


Q ss_pred             HHHHHHHHHHhhh----h------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336           76 KESVAKLVKLIDK----S------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK  137 (143)
Q Consensus        76 ~~~~~~~l~~l~~----~------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~  137 (143)
                      .++-+++++.+.+    .            .+.-+|||||||+++|||.-++.+++|||+   |++-+|.-+...+++
T Consensus       610 ~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDD---plSAVDahvg~~if~  684 (1381)
T KOG0054|consen  610 EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDD---PLSAVDAHVGKHIFE  684 (1381)
T ss_pred             HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcC---cchhhhHhhhHHHHH
Confidence            3344444444321    1            233379999999999999999999999994   567777766665554

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.78  E-value=7.2e-20  Score=134.91  Aligned_cols=53  Identities=4%  Similarity=-0.041  Sum_probs=42.8

Q ss_pred             HHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcC--CcccccCCccccchhhhhhhhhc
Q 032336           80 AKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNV--DWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        80 ~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p--~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .+.++.+++.    +.++  +||||+|||++|||++.+|  +++++|   ||++.+|......+
T Consensus       118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllD---EPt~gLD~~~~~~l  178 (226)
T cd03270         118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLD---EPSIGLHPRDNDRL  178 (226)
T ss_pred             HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEe---CCccCCCHHHHHHH
Confidence            4567776653    2233  7999999999999999998  599999   99999999877644

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.75  E-value=3.7e-19  Score=129.34  Aligned_cols=116  Identities=10%  Similarity=-0.016  Sum_probs=76.0

Q ss_pred             eEEEECCCCCcHHHHHHHHh----CCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-----ccccccCChh
Q 032336            4 GQVVIGPPGSGKTTYCNGMS----QFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-----LVNFSTLDIQ   74 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~----g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-----l~~~~~~~~~   74 (143)
                      .++|+|||||||||||++|.    |..+|+.|.+..+.     +....  ...+..++++||+..     +....+...+
T Consensus        24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~-----~~i~~--~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~   96 (204)
T cd03240          24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP-----KLIRE--GEVRAQVKLAFENANGKKYTITRSLAILEN   96 (204)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchH-----HHHhC--CCCcEEEEEEEEeCCCCEEEEEEEhhHhhc
Confidence            57899999999999999994    88888887765111     11111  123356888999872     1110010000


Q ss_pred             ----hHHHHHHHHHHhhhhCCCcCCchhHHH------HHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           75 ----DKESVAKLVKLIDKSNGYIFAGMDASA------VEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        75 ----~~~~~~~~l~~l~~~~~~~lSgGe~qr------v~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                          ....+.+.+   + .....+|+||+||      +++|+|++.+|+++++|   ||++.+|....+
T Consensus        97 ~~~~~~~~~~~~~---~-~~~~~LS~G~~~~~~la~rlala~al~~~p~illlD---EP~~~LD~~~~~  158 (204)
T cd03240          97 VIFCHQGESNWPL---L-DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALD---EPTTNLDEENIE  158 (204)
T ss_pred             eeeechHHHHHHH---h-cCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc---CCccccCHHHHH
Confidence                011122112   1 1233479999996      78999999999999999   999999987766

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.73  E-value=1.9e-18  Score=128.77  Aligned_cols=129  Identities=12%  Similarity=0.044  Sum_probs=78.7

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEccee-ehhh--hccccHHHHHhhcchhcccccc--cc---------cc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVF-YLQA--VHNSACRKLTKELCDVIEDYSL--VN---------FS   69 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~-~~~~--~~~~~~~~~~~~ig~V~Q~~~l--~~---------~~   69 (143)
                      .++|+||||||||||+.+|++++.+..|++...+.. +...  ....+.....-.+.+..|+...  +.         +.
T Consensus        24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~  103 (247)
T cd03275          24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR  103 (247)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence            478999999999999999999998777777644310 0000  0000001111122333333221  10         00


Q ss_pred             -cCChhhHHHHHHHHHHhhhhC-------------------------C--CcCCchhHHHHHHHHHHhhc----CCcccc
Q 032336           70 -TLDIQDKESVAKLVKLIDKSN-------------------------G--YIFAGMDASAVEFSKIAVRN----VDWDYY  117 (143)
Q Consensus        70 -~~~~~~~~~~~~~l~~l~~~~-------------------------~--~~lSgGe~qrv~ia~al~~~----p~~lll  117 (143)
                       .-.......++++++.+++..                         .  ..+|+||+||++||++++.+    |+++++
T Consensus       104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll  183 (247)
T cd03275         104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL  183 (247)
T ss_pred             ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence             001122344567777766520                         0  22699999999999999975    899999


Q ss_pred             cCCccccchhhhhhhhhc
Q 032336          118 RYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus       118 d~~~~~~~~~~~~~~~~~  135 (143)
                      |   ||++.+|...++.+
T Consensus       184 D---EPt~~LD~~~~~~l  198 (247)
T cd03275         184 D---EVDAALDNTNVGKV  198 (247)
T ss_pred             e---cccccCCHHHHHHH
Confidence            9   99999998766643

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.73  E-value=1.9e-18  Score=125.02  Aligned_cols=121  Identities=10%  Similarity=0.084  Sum_probs=76.2

Q ss_pred             EEEECCCCCcHHHHHHHHhCCcccCCceEEEc--ceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHHH
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICCS--NVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKL   82 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~--g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~~   82 (143)
                      .+|+||||||||||+..|.-.+   .|+....  |..+ .++...  ..-...+.+++|+..++.. .........++++
T Consensus        24 ~~i~G~NGsGKStll~ai~~~l---~~~~~~~~r~~~~-~~~i~~--~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~   96 (198)
T cd03276          24 NFIVGNNGSGKSAILTALTIGL---GGKASDTNRGSSL-KDLIKD--GESSAKITVTLKNQGLDAN-PLCVLSQDMARSF   96 (198)
T ss_pred             EEEECCCCCcHHHHHHHHHHHh---cCCcccccccccH-HHHhhC--CCCeEEEEEEEEcCCccCC-cCCHHHHHHHHHH
Confidence            5899999999999999887433   2332211  2100 011000  0112346677777665542 1122223566677


Q ss_pred             HHHhhhhCCCc--CCchhHHHHHHHHHH----hhcCCcccccCCccccchhhhhhhhhc
Q 032336           83 VKLIDKSNGYI--FAGMDASAVEFSKIA----VRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        83 l~~l~~~~~~~--lSgGe~qrv~ia~al----~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ++.-+.....+  +|+||+||++||+|+    +.+|+++++|   ||++.+|...+..+
T Consensus        97 l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlD---EP~~glD~~~~~~~  152 (198)
T cd03276          97 LTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLD---EFDVFMDMVNRKIS  152 (198)
T ss_pred             hccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEec---CcccccCHHHHHHH
Confidence            76622233333  799999999999999    5899999999   99999998876543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.72  E-value=4.8e-18  Score=135.83  Aligned_cols=118  Identities=14%  Similarity=0.168  Sum_probs=81.7

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc--c--ccCC-hhhHHH
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN--F--STLD-IQDKES   78 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~--~--~~~~-~~~~~~   78 (143)
                      -+++|||||||||||||++.|.+.|..|.|.-.-.        .......++.+..- +....+  +  ..+. ....+.
T Consensus       418 rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H--------~~~~~y~Qh~~e~l-dl~~s~le~~~~~~~~~~~~e~  488 (614)
T KOG0927|consen  418 RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH--------NKLPRYNQHLAEQL-DLDKSSLEFMMPKFPDEKELEE  488 (614)
T ss_pred             ceeEecCCCCchhhhHHHHhhcccccccccccccc--------ccchhhhhhhHhhc-CcchhHHHHHHHhccccchHHH
Confidence            47999999999999999999999999999974321        11111122222100 011100  0  0112 344567


Q ss_pred             HHHHHHHhhhh-C---CCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           79 VAKLVKLIDKS-N---GYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        79 ~~~~l~~l~~~-~---~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                      +..++.++++. +   ...  +|.|||.||.+|+++...|.+|+||   |||..+|.....
T Consensus       489 ~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD---EPtnhLDi~tid  546 (614)
T KOG0927|consen  489 MRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLD---EPTNHLDIETID  546 (614)
T ss_pred             HHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEec---CCCcCCCchhHH
Confidence            88899998874 2   111  6999999999999999999999999   999999876544

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.72  E-value=1.5e-18  Score=126.87  Aligned_cols=111  Identities=12%  Similarity=0.064  Sum_probs=70.3

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-------------
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-------------   70 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-------------   70 (143)
                      .++|+|||||||||++++|.          ++.|.    +..    ...++.+++++|+..+.+..+             
T Consensus        27 i~~ivGpNGaGKSTll~~i~----------~~~G~----~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (212)
T cd03274          27 FSAIVGPNGSGKSNVIDSML----------FVFGF----RAS----KMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIID   88 (212)
T ss_pred             eEEEECCCCCCHHHHHHHHH----------HHhcc----CHH----HhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCC
Confidence            58999999999999999997          22332    111    111245888888765432110             


Q ss_pred             --------CChhhHH---HHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhh----cCCcccccCCccccchhhhh
Q 032336           71 --------LDIQDKE---SVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVR----NVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        71 --------~~~~~~~---~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~----~p~~llld~~~~~~~~~~~~  130 (143)
                              .......   ...++++.+++.   +..  .+|+||+||+++|+|++.    .|+++++|   ||++.+|..
T Consensus        89 ~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililD---EPt~gLD~~  165 (212)
T cd03274          89 KPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMD---EIDAALDFR  165 (212)
T ss_pred             HHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEc---CCCcCCCHH
Confidence                    0000000   012333333432   222  279999999999999974    47999999   999999988


Q ss_pred             hhhhc
Q 032336          131 VQEKY  135 (143)
Q Consensus       131 ~~~~~  135 (143)
                      ..+.+
T Consensus       166 ~~~~l  170 (212)
T cd03274         166 NVSIV  170 (212)
T ss_pred             HHHHH
Confidence            77643

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.68  E-value=6.7e-17  Score=129.31  Aligned_cols=113  Identities=10%  Similarity=0.175  Sum_probs=79.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc----------ccc---
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV----------NFS---   69 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~----------~~~---   69 (143)
                      -++-|+||||||||+|+|+|.|+.+...|...+--               ..++-|+||.|..-          |..   
T Consensus       509 ~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~---------------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~  573 (728)
T KOG0064|consen  509 MHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR---------------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQ  573 (728)
T ss_pred             ceEEEECCCCccHHHHHHHHhccCcccCCeeecCC---------------CcceEeccCCCccCcCcccceeecCCcHHH
Confidence            35679999999999999999999998888775311               12389999988642          110   


Q ss_pred             ----cCChhhHHHHHHHHHHhhh---h----------C-CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           70 ----TLDIQDKESVAKLVKLIDK---S----------N-GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        70 ----~~~~~~~~~~~~~l~~l~~---~----------~-~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                          .+.+++   .+.+|..+++   .          + ..++|||||||+++||.+-+.|+.-+||   |-++-.-.++
T Consensus       574 ~~~kg~~d~d---L~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLD---EcTsAvsidv  647 (728)
T KOG0064|consen  574 MKRKGYTDQD---LEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLD---ECTSAVSIDV  647 (728)
T ss_pred             HHhcCCCHHH---HHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhh---hhhcccccch
Confidence                122222   3334444332   1          1 2237999999999999999999999999   8887666555


Q ss_pred             hhhcc
Q 032336          132 QEKYI  136 (143)
Q Consensus       132 ~~~~~  136 (143)
                      .-+++
T Consensus       648 E~~i~  652 (728)
T KOG0064|consen  648 EGKIF  652 (728)
T ss_pred             HHHHH
Confidence            54544

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=2.2e-17  Score=142.56  Aligned_cols=119  Identities=14%  Similarity=0.085  Sum_probs=90.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcc--cCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLS--LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      .+||+|+|||||||||++|+|-..  ..+|+|.++|.    +...   ...+|.+|||-|+....+..+           
T Consensus       819 LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~----p~~q---~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~L  891 (1391)
T KOG0065|consen  819 LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGF----PKDQ---ETFARVSGYVEQQDIHSPELTVRESLRFSAAL  891 (1391)
T ss_pred             eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCe----eCch---hhhccccceeecccccCcccchHHHHHHHHHH
Confidence            489999999999999999999642  24688899996    2221   446788999999764322111           


Q ss_pred             -----CCh-hhHHHHHHHHHHhhhh---------CCCcCCchhHHHHHHHHHHhhcC-CcccccCCccccchhhhhhh
Q 032336           71 -----LDI-QDKESVAKLVKLIDKS---------NGYIFAGMDASAVEFSKIAVRNV-DWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        71 -----~~~-~~~~~~~~~l~~l~~~---------~~~~lSgGe~qrv~ia~al~~~p-~~llld~~~~~~~~~~~~~~  132 (143)
                           +.. +..+.++++++.+++.         .+.-+|..||+|+.||--|+.+| -+|+||   ||++.||-...
T Consensus       892 Rlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLD---EPTSGLDsqaA  966 (1391)
T KOG0065|consen  892 RLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLD---EPTSGLDSQAA  966 (1391)
T ss_pred             cCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEec---CCCCCccHHHH
Confidence                 222 3347789999988763         23337899999999999999999 899999   99999997654

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=6.9e-17  Score=127.45  Aligned_cols=110  Identities=13%  Similarity=0.074  Sum_probs=81.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cc------cc--ccCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LV------NF--STLD   72 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~------~~--~~~~   72 (143)
                      --+||+||||.||||||++|.|-+.|..|+.+-+.               |-+||+.-|+..  |.      .+  ..+.
T Consensus       614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh---------------rL~iG~FdQh~~E~L~~Eetp~EyLqr~FN  678 (807)
T KOG0066|consen  614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH---------------RLRIGWFDQHANEALNGEETPVEYLQRKFN  678 (807)
T ss_pred             ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc---------------eeeeechhhhhHHhhccccCHHHHHHHhcC
Confidence            35899999999999999999999999999876332               123666555432  11      00  0011


Q ss_pred             hhhHHHHHHHHHHhhhhCCC------cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           73 IQDKESVAKLVKLIDKSNGY------IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        73 ~~~~~~~~~~l~~l~~~~~~------~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                       -..+.++..|-.+++....      -+||||+.||++|...+..|++|+||   ||+-+|+.+.
T Consensus       679 -lpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILD---EPTNNLDIES  739 (807)
T KOG0066|consen  679 -LPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILD---EPTNNLDIES  739 (807)
T ss_pred             -CChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEec---CCCCCcchhh
Confidence             1234567778888875322      17999999999999999999999999   9999998754

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.65  E-value=3.7e-16  Score=123.34  Aligned_cols=108  Identities=15%  Similarity=0.071  Sum_probs=70.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC---------C
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------D   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------~   72 (143)
                      ++.++++||||-||||++++|+|.++|++|. . .+      +          +++|=||-...-...++         .
T Consensus       367 gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~-~~------~----------~vSyKPQyI~~~~~gtV~~~l~~~~~~  428 (591)
T COG1245         367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-E-ED------L----------KVSYKPQYISPDYDGTVEDLLRSAIRS  428 (591)
T ss_pred             ceEEEEECCCCcchHHHHHHHhccccCCCCC-C-cc------c----------eEeecceeecCCCCCcHHHHHHHhhhh
Confidence            4678999999999999999999999999997 1 11      1          14444443211000000         0


Q ss_pred             -hhhHHHHHHHHHHhh---hhCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           73 -IQDKESVAKLVKLID---KSNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        73 -~~~~~~~~~~l~~l~---~~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                       -.+.-.-.++++-+.   +.++.+  +||||-|||+||.+|..++++.++|   ||.+-||.+
T Consensus       429 ~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllD---EPSA~LDvE  489 (591)
T COG1245         429 AFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLD---EPSAYLDVE  489 (591)
T ss_pred             hcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEec---CchhhccHH
Confidence             000011122222232   234444  7999999999999999999999999   888877764

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.65  E-value=4e-16  Score=125.74  Aligned_cols=115  Identities=10%  Similarity=0.191  Sum_probs=82.7

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc----------ccccC--
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV----------NFSTL--   71 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~----------~~~~~--   71 (143)
                      .+-|.||||||||+|||+++|+.+..+|++..-..       ..+     +.+-||||.|...          |....  
T Consensus       463 ~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~-------~~~-----~~lfflPQrPYmt~GTLRdQvIYP~~~~~~  530 (659)
T KOG0060|consen  463 NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD-------GGP-----KDLFFLPQRPYMTLGTLRDQVIYPLKAEDM  530 (659)
T ss_pred             eEEEECCCCCchhHHHHHHhcccccCCCeEEeccc-------CCC-----CceEEecCCCCccccchhheeeccCccccc
Confidence            46689999999999999999999999999974321       000     3478999987632          21110  


Q ss_pred             -C-hhhHHHHHHHHHHhhhh---------C-------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           72 -D-IQDKESVAKLVKLIDKS---------N-------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        72 -~-~~~~~~~~~~l~~l~~~---------~-------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                       . -.+.+.+.+.|+.+.+.         +       ..++|+|||||+++||.+-++|++-+||   |-|+-+.-++..
T Consensus       531 ~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLD---E~TSAv~~dvE~  607 (659)
T KOG0060|consen  531 DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILD---ECTSAVTEDVEG  607 (659)
T ss_pred             cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEee---chhhhccHHHHH
Confidence             0 11234566666665431         2       1237999999999999999999999999   999888766544

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.64  E-value=5e-16  Score=116.67  Aligned_cols=55  Identities=7%  Similarity=-0.075  Sum_probs=43.8

Q ss_pred             HHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhc---CCcccccCCccccchhhhhhhhhc
Q 032336           78 SVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRN---VDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        78 ~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~---p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .+.++++.+++.    ++..  +||||+||+.+|++|+.+   |+++++|   ||++.|+....+++
T Consensus       148 ~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLD---EPtsgLD~~~~~~l  211 (261)
T cd03271         148 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILD---EPTTGLHFHDVKKL  211 (261)
T ss_pred             HHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEE---CCCCCCCHHHHHHH
Confidence            455566666653    2322  799999999999999996   7999999   99999998887744

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.57  E-value=4e-15  Score=119.30  Aligned_cols=128  Identities=15%  Similarity=0.050  Sum_probs=74.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEc--ceeehh-hhc-----cccHHHHHhhcchhcccccccc-------
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCS--NVFYLQ-AVH-----NSACRKLTKELCDVIEDYSLVN-------   67 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~--g~~~~~-~~~-----~~~~~~~~~~ig~V~Q~~~l~~-------   67 (143)
                      ...+|||||||||||+|++|.|-..|..-++-+-  ...+.. ...     -+.....+.++.+...+.....       
T Consensus       102 ~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~  181 (614)
T KOG0927|consen  102 RRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDE  181 (614)
T ss_pred             ceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhH
Confidence            4679999999999999999999998876665331  110000 000     0001112222333222211110       


Q ss_pred             c------cc-C-ChhhHHHHHHHHHHhhh----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           68 F------ST-L-DIQDKESVAKLVKLIDK----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        68 ~------~~-~-~~~~~~~~~~~l~~l~~----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                      +      .. . ...-..++.++|..++-    ....+  +|||++.|+++||+|.++|++||+|   |||.-||.+...
T Consensus       182 l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLD---EPtnhLDleA~~  258 (614)
T KOG0927|consen  182 LDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLD---EPTNHLDLEAIV  258 (614)
T ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEec---CCccCCCHHHHH
Confidence            0      00 0 00111223333333321    23333  7999999999999999999999999   999999987654

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=9.9e-15  Score=116.46  Aligned_cols=115  Identities=14%  Similarity=0.074  Sum_probs=69.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-------hhcchhcccccccccccCChhh
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-------KELCDVIEDYSLVNFSTLDIQD   75 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-------~~ig~V~Q~~~l~~~~~~~~~~   75 (143)
                      +..+|+|+||+|||||||+|+.      |.|......  +.+.......+.       ...-++.++..+..    ..+-
T Consensus       107 rRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve--qE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~----~~~l  174 (582)
T KOG0062|consen  107 RRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE--QEVRGDDTEALQSVLESDTERLDFLAEEKELLA----GLTL  174 (582)
T ss_pred             cccceeCCCCCcHHHHHHHHHh------cCcCccCch--hheeccchHHHhhhhhccHHHHHHHHhhhhhhc----cchH
Confidence            4568999999999999999987      444322210  001000000000       00122333322210    0011


Q ss_pred             HHHHHHHHHHhhh----h--CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           76 KESVAKLVKLIDK----S--NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        76 ~~~~~~~l~~l~~----~--~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                      .+...++|.-++.    .  ....+|||=|-|+++|||+-.+|++||||   ||+-.||.-..
T Consensus       175 ~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLD---EPTNhLDv~av  234 (582)
T KOG0062|consen  175 EEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLD---EPTNHLDVVAV  234 (582)
T ss_pred             HHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeec---CCcccchhHHH
Confidence            2233336666653    2  33337999999999999999999999999   99999987654

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.55  E-value=3.6e-14  Score=113.99  Aligned_cols=124  Identities=14%  Similarity=0.074  Sum_probs=94.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhccccc---ccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDYS---LVN----------   67 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~~---l~~----------   67 (143)
                      ++.++|.|-=|||+|=|+++|.|..++.+|+|.++|+.    +...++ ..++..++|||.+..   ++.          
T Consensus       285 GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~----v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l  360 (500)
T COG1129         285 GEILGIAGLVGAGRTELARALFGARPASSGEILLDGKP----VRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITL  360 (500)
T ss_pred             CcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEE----ccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheeh
Confidence            57899999999999999999999999999999999973    333333 456778999998843   221          


Q ss_pred             -----cc---cCC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           68 -----FS---TLD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        68 -----~~---~~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                           +.   .+. ....+.++++.+.+++.    ++.+  +|||.||+|.|||.|+.+|++|++|   |||-..|...-
T Consensus       361 ~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilD---EPTRGIDVGAK  437 (500)
T COG1129         361 ASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILD---EPTRGIDVGAK  437 (500)
T ss_pred             HhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEEC---CCCcCcccchH
Confidence                 00   111 23344566777777663    2222  7999999999999999999999999   99998886543

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.48  E-value=1e-14  Score=115.29  Aligned_cols=119  Identities=13%  Similarity=0.122  Sum_probs=73.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHh-hcc--------------hhcccccccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTK-ELC--------------DVIEDYSLVN   67 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~-~ig--------------~V~Q~~~l~~   67 (143)
                      .-++|+||||-||||.+|+|+|.+.|.=|+-.  +.    +-+..-.+..|. .+.              .=+|-..+.|
T Consensus       101 ~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~p----p~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP  174 (591)
T COG1245         101 KVVGILGPNGIGKSTALKILAGELKPNLGRYE--DP----PSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP  174 (591)
T ss_pred             cEEEEEcCCCccHHHHHHHHhCccccCCCCCC--CC----CCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence            45899999999999999999999999877642  10    001000111110 000              0011111111


Q ss_pred             c---ccC----Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           68 F---STL----DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        68 ~---~~~----~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                      .   .++    .+ ...-..+++.+++++.   ++.+  +||||-|||+||.++.++.+++++|   ||.+-||..
T Consensus       175 k~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FD---EpsSyLDi~  247 (591)
T COG1245         175 KVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFD---EPSSYLDIR  247 (591)
T ss_pred             HHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEc---CCcccccHH
Confidence            0   000    01 1113456666776653   4444  7999999999999999999999999   888877754

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.48  E-value=1.8e-14  Score=102.74  Aligned_cols=39  Identities=8%  Similarity=-0.052  Sum_probs=35.0

Q ss_pred             CCchhHHHHHHHHHHh----hcCCcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAVEFSKIAV----RNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv~ia~al~----~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +|+||+||+++|++++    .+|+++++|   ||++.++....+.+
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilD---Ep~~~LD~~~~~~i  137 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLD---EIDAALDPTNRRRV  137 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEE---CCCCCCCHHHHHHH
Confidence            7999999999999997    589999999   99999998877643

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.47  E-value=6.6e-14  Score=101.32  Aligned_cols=96  Identities=13%  Similarity=0.014  Sum_probs=58.9

Q ss_pred             eEEEECCCCCcHHHHHHHHh-CCcccCCc-eEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            4 GQVVIGPPGSGKTTYCNGMS-QFLSLIGS-NICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~-g~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      .++|.||||||||||||+|+ ..+.+..| .+....               ...++|+.|....+     ..+  +.+.+
T Consensus        30 ~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~---------------~~~~~~~~~~~~~l-----g~~--~~l~~   87 (200)
T cd03280          30 VLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE---------------GSSLPVFENIFADI-----GDE--QSIEQ   87 (200)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc---------------cccCcCccEEEEec-----Cch--hhhhc
Confidence            48999999999999999998 22222222 111000               01244444443211     111  11111


Q ss_pred             HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                      -+        ..+|+|++|++.+++++ .+|+++++|   ||++.++.....
T Consensus        88 ~~--------s~fs~g~~~~~~i~~~~-~~p~llllD---Ep~~glD~~~~~  127 (200)
T cd03280          88 SL--------STFSSHMKNIARILQHA-DPDSLVLLD---ELGSGTDPVEGA  127 (200)
T ss_pred             Cc--------chHHHHHHHHHHHHHhC-CCCcEEEEc---CCCCCCCHHHHH
Confidence            11        12468999999999885 799999999   999999987654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.45  E-value=4.4e-14  Score=102.55  Aligned_cols=124  Identities=10%  Similarity=0.031  Sum_probs=88.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc----CCceEEEcceeehhhhccccHHHHH----hhcchhccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL----IGSNICCSNVFYLQAVHNSACRKLT----KELCDVIEDYSLV-------   66 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~----~~ig~V~Q~~~l~-------   66 (143)
                      ++.-+++|.||||||-+.|.|+|..+-    +.....|++.    ++-..++++.|    +.|+++||+|.-.       
T Consensus        33 GEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~i----dLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~i  108 (330)
T COG4170          33 GEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDI----DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERV  108 (330)
T ss_pred             ceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccc----hhhcCChHHhhhhhccchhhhhcCchhhcChHHHH
Confidence            456789999999999999999998753    4555666665    33344444444    4578999998621       


Q ss_pred             --------cccc--------CChhhHHHHHHHHHHhhhh--------CCCcCCchhHHHHHHHHHHhhcCCcccccCCcc
Q 032336           67 --------NFST--------LDIQDKESVAKLVKLIDKS--------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSF  122 (143)
Q Consensus        67 --------~~~~--------~~~~~~~~~~~~l~~l~~~--------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~  122 (143)
                              ++.+        +.- ...++.++|.++|+.        ..|.+..||.|.|.||.|+|..|++|+-|   |
T Consensus       109 G~QlIq~IP~wTfkgrWWq~F~W-rKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIAD---E  184 (330)
T COG4170         109 GRQLIQNIPAWTYKGRWWQRFGW-RKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIAD---E  184 (330)
T ss_pred             HHHHHhhCccccccchHhhhhch-hHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEecc---C
Confidence                    1111        111 234677788888763        23336789999999999999999999999   8


Q ss_pred             ccchhhhhhhh
Q 032336          123 HLFQSLAEVQE  133 (143)
Q Consensus       123 ~~~~~~~~~~~  133 (143)
                      |+-..+.-++-
T Consensus       185 PTN~~e~~Tq~  195 (330)
T COG4170         185 PTNSMEPTTQA  195 (330)
T ss_pred             CCcccCccHHH
Confidence            88877766654

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.44  E-value=1.2e-13  Score=99.80  Aligned_cols=125  Identities=12%  Similarity=0.033  Sum_probs=79.4

Q ss_pred             EEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhc-----ccc--HHHHHhhcchhc---cccccc-cc--ccC
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVH-----NSA--CRKLTKELCDVI---EDYSLV-NF--STL   71 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-----~~~--~~~~~~~ig~V~---Q~~~l~-~~--~~~   71 (143)
                      .-++|.||||||||||+|+|-.-...|.|.+.|.....+..     ...  -.++.+..++--   =+..+- ..  ..+
T Consensus        43 cLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV  122 (291)
T KOG2355|consen   43 CLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGV  122 (291)
T ss_pred             EEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHHhhc
Confidence            45899999999999999999887788999998863221100     000  012333222211   111100 00  011


Q ss_pred             ChhhHHHHHHHHHHhhhhCCCc---CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           72 DIQDKESVAKLVKLIDKSNGYI---FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        72 ~~~~~~~~~~~l~~l~~~~~~~---lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                      .-.+.++-++++..+++..++-   .|-||++||.||+-|..--++||||   |-+-+||.-..
T Consensus       123 ~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLD---EVTVDLDVlAR  183 (291)
T KOG2355|consen  123 GGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLD---EVTVDLDVLAR  183 (291)
T ss_pred             cCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEee---eeEeehHHHHH
Confidence            1223355566777777655444   4899999999999999999999999   88888876443

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.43  E-value=8.1e-13  Score=99.77  Aligned_cols=57  Identities=19%  Similarity=0.186  Sum_probs=46.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccc-cHHHHHhhcchhcccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNS-ACRKLTKELCDVIEDY   63 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~~~~~ig~V~Q~~   63 (143)
                      ..++|+||||||||||+++|+|+++|++|+|.++|+.+    ... ...+++..+++++|..
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v----~~~d~~~ei~~~~~~~~q~~  169 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKV----GIVDERSEIAGCVNGVPQHD  169 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEe----ecchhHHHHHHHhccccccc
Confidence            46899999999999999999999999999999999743    222 2356666788888854

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=3.5e-13  Score=107.73  Aligned_cols=112  Identities=13%  Similarity=0.026  Sum_probs=83.5

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc--------cc--cCCh
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN--------FS--TLDI   73 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~--------~~--~~~~   73 (143)
                      .++++|+||+||||++|++.+-+.|..|.+.+.+               |.+++|.+|...-+.        ++  ...-
T Consensus       392 Ri~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~---------------r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG  456 (582)
T KOG0062|consen  392 RISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP---------------RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPG  456 (582)
T ss_pred             hhheeccCchhHHHHHHHHhccCCcccceeeecc---------------cceecchhHhhhhHHHHHhHHHHHHHHhCCC
Confidence            3679999999999999999999999999886554               234777777643110        00  0101


Q ss_pred             hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           74 QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        74 ~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                      ...+.++..+..+|+.    .+..  +||||+-||++|.....+|-+|+||   ||+--||.+...
T Consensus       457 ~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLD---EPTNhLD~dsl~  519 (582)
T KOG0062|consen  457 KTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLD---EPTNHLDRDSLG  519 (582)
T ss_pred             CCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEec---CCCccccHHHHH
Confidence            1234567778888763    3333  7999999999999999999999999   999999887654

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.39  E-value=1.4e-13  Score=96.61  Aligned_cols=92  Identities=14%  Similarity=-0.001  Sum_probs=61.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcc-hhcccccccccccCChhhHHHHHHH
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC-DVIEDYSLVNFSTLDIQDKESVAKL   82 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig-~V~Q~~~l~~~~~~~~~~~~~~~~~   82 (143)
                      .+.|+|||||||||+++.+....-...|.+....     ..          +.+ +++.....+                
T Consensus        23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-----~~----------~~g~~~~~~~~~~----------------   71 (162)
T cd03227          23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-----GV----------KAGCIVAAVSAEL----------------   71 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-----cc----------cCCCcceeeEEEE----------------
Confidence            6789999999999999998776655544443211     00          111 122111000                


Q ss_pred             HHHhhhhCCCcCCchhHHHHHHHHHHhh----cCCcccccCCccccchhhhhhhhh
Q 032336           83 VKLIDKSNGYIFAGMDASAVEFSKIAVR----NVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        83 l~~l~~~~~~~lSgGe~qrv~ia~al~~----~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                           +....-+|+||+||+.+|++++.    +|+++++|   ||+..++......
T Consensus        72 -----i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllD---Ep~~gld~~~~~~  119 (162)
T cd03227          72 -----IFTRLQLSGGEKELSALALILALASLKPRPLYILD---EIDRGLDPRDGQA  119 (162)
T ss_pred             -----ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEe---CCCCCCCHHHHHH
Confidence                 00001178999999999999997    78999999   9999988876553

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.37  E-value=2.4e-12  Score=93.83  Aligned_cols=38  Identities=5%  Similarity=-0.010  Sum_probs=33.3

Q ss_pred             chhHHHHHHHHHHhhcCCcccccCCcccc-----chhhhhhhhhcc
Q 032336           96 GMDASAVEFSKIAVRNVDWDYYRYPSFHL-----FQSLAEVQEKYI  136 (143)
Q Consensus        96 gGe~qrv~ia~al~~~p~~llld~~~~~~-----~~~~~~~~~~~~  136 (143)
                      |-+++++.||++++.+|+++++|   ||+     +.++...++.+.
T Consensus       155 ~v~~~f~~ia~~l~~~p~~~~ld---Ep~~~~~~~~ld~~~~~~~~  197 (215)
T PTZ00132        155 NFEKPFLWLARRLTNDPNLVFVG---APALAPEEIQIDPELVAQAE  197 (215)
T ss_pred             CHHHHHHHHHHHHhhcccceecC---CcccCCCccccCHHHHHHHH
Confidence            34889999999999999999999   999     999988877543

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.36  E-value=4.1e-12  Score=101.20  Aligned_cols=127  Identities=17%  Similarity=0.078  Sum_probs=97.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhccccc---cc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYS---LV-----------   66 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~---l~-----------   66 (143)
                      ++.++|.|-.|-|-+.|+..|+|+.++.+|+|.++|.++   +...+..+++ ..++|||++..   +.           
T Consensus       284 GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v---~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL  360 (501)
T COG3845         284 GEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDV---LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVL  360 (501)
T ss_pred             CcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEec---cccCCHHHHHhcCCccCChhhccCccccCccHHHHhhh
Confidence            578999999999999999999999999999999999732   2344555555 45999999853   11           


Q ss_pred             ------cccc---CC-hhhHHHHHHHHHHhhhhC------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           67 ------NFST---LD-IQDKESVAKLVKLIDKSN------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        67 ------~~~~---~~-~~~~~~~~~~l~~l~~~~------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                            ++..   .. ..-...+.++++.++...      ...+|||++|++-+||-+..+|++|+..   .|+..+|..
T Consensus       361 ~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~---qPTrGLDvg  437 (501)
T COG3845         361 GRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAA---QPTRGLDVG  437 (501)
T ss_pred             hhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEc---CCCccccHH
Confidence                  0111   11 123456777888887641      2227999999999999999999999999   899999988


Q ss_pred             hhhh
Q 032336          131 VQEK  134 (143)
Q Consensus       131 ~~~~  134 (143)
                      ..+.
T Consensus       438 A~~~  441 (501)
T COG3845         438 AIEF  441 (501)
T ss_pred             HHHH
Confidence            7763

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.35  E-value=2e-12  Score=116.15  Aligned_cols=53  Identities=4%  Similarity=-0.056  Sum_probs=41.9

Q ss_pred             HHHHHhhhh----CCCc--CCchhHHHHHHHHHHh---hcCCcccccCCccccchhhhhhhhhcc
Q 032336           81 KLVKLIDKS----NGYI--FAGMDASAVEFSKIAV---RNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        81 ~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~---~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ++++.+++.    ++..  +||||+|||+||++|+   .+|+++++|   ||++.|+....++++
T Consensus       791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD---EPTsGLD~~~~~~Ll  852 (1809)
T PRK00635        791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD---EPTTGLHTHDIKALI  852 (1809)
T ss_pred             HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe---CCCCCCCHHHHHHHH
Confidence            355555552    2233  7999999999999998   699999999   999999988876543

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.34  E-value=2.5e-13  Score=99.41  Aligned_cols=40  Identities=8%  Similarity=-0.099  Sum_probs=33.5

Q ss_pred             cCCchhHHHHHHHHHH----hhcCCcccccCCccccchhhhhhhhhc
Q 032336           93 IFAGMDASAVEFSKIA----VRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        93 ~lSgGe~qrv~ia~al----~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .+|+||||++.+++++    +.+|+++++|   ||++.++......+
T Consensus       126 ~LS~G~~q~~~i~~~la~~~~~~p~llllD---EP~~~LD~~~~~~i  169 (213)
T cd03277         126 HQSGGERSVSTMLYLLSLQELTRCPFRVVD---EINQGMDPTNERKV  169 (213)
T ss_pred             hccccHHHHHHHHHHHHHHhccCCCEEEEe---cccccCCHHHHHHH
Confidence            3799999998877655    4799999999   99999998877643

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.34  E-value=2.8e-12  Score=110.39  Aligned_cols=39  Identities=15%  Similarity=0.011  Sum_probs=36.3

Q ss_pred             CCchhHHHHHHHHHHhhcC---CcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAVEFSKIAVRNV---DWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv~ia~al~~~p---~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +||||+||+.||++|+.+|   +++++|   ||++.|+...++++
T Consensus       831 LSgGEkQRl~LAraL~~~p~~~~llILD---EPtsGLD~~~~~~L  872 (943)
T PRK00349        831 LSGGEAQRVKLAKELSKRSTGKTLYILD---EPTTGLHFEDIRKL  872 (943)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCeEEEEE---CCCCCCCHHHHHHH
Confidence            7999999999999999999   999999   99999999887754

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.33  E-value=1.3e-12  Score=102.74  Aligned_cols=116  Identities=10%  Similarity=0.036  Sum_probs=80.2

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCc--------ccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-------c
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFL--------SLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-------L   65 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~--------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-------l   65 (143)
                      ++.-++|+|+|||||||+|++|+|..        +|++|.|.+--..    +           -+.+|-+..       +
T Consensus       408 pGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt----~-----------~a~iPge~Ep~f~~~ti  472 (593)
T COG2401         408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT----V-----------SALIPGEYEPEFGEVTI  472 (593)
T ss_pred             CCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc----h-----------hhccCcccccccCchhH
Confidence            35678999999999999999999974        6888888653210    1           112222111       0


Q ss_pred             cccccCChhhHHHHHHHHHHhhhhCCCc-------CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           66 VNFSTLDIQDKESVAKLVKLIDKSNGYI-------FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        66 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~-------lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      ..+.....-|...+.++|.++++.+...       +|-||+-|+.||.+++..|.+++-|   |-.+-||..+..+
T Consensus       473 lehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD---EF~AhLD~~TA~r  545 (593)
T COG2401         473 LEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID---EFAAHLDELTAVR  545 (593)
T ss_pred             HHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh---hhhhhcCHHHHHH
Confidence            0111111234456778888888754322       6999999999999999999999999   8888888776653

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.31  E-value=1.8e-12  Score=98.23  Aligned_cols=39  Identities=15%  Similarity=-0.029  Sum_probs=34.6

Q ss_pred             CCchhHHHHHHHHHHhh----cCCcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAVEFSKIAVR----NVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv~ia~al~~----~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +||||+||+++|++++.    +|+++++|   ||++.++...+..+
T Consensus       171 lS~G~~~r~~la~~~~~~~~~~p~vlllD---Ep~~~Ld~~~~~~l  213 (276)
T cd03241         171 ASGGELSRLMLALKAILARKDAVPTLIFD---EIDTGISGEVAQAV  213 (276)
T ss_pred             cChhHHHHHHHHHHHHHhcCCCCCEEEEE---CCccCCCHHHHHHH
Confidence            69999999999987654    99999999   99999999887754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.29  E-value=1.6e-12  Score=113.07  Aligned_cols=124  Identities=18%  Similarity=0.150  Sum_probs=90.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc---CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST--------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~--------   70 (143)
                      +..+-++||.||||||||+.++|-.+-   ..|+|.++|.    +......   ++.++|.+|+...++.++        
T Consensus       141 g~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~----~~~e~~~---~~~~aY~~e~DvH~p~lTVreTldFa  213 (1391)
T KOG0065|consen  141 GEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGH----DLKEFVP---KKTVAYNSEQDVHFPELTVRETLDFA  213 (1391)
T ss_pred             CceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCC----ccccccc---CceEEeccccccccceeEEeehhhHH
Confidence            356779999999999999999998743   3569999996    3332222   567999999866553221        


Q ss_pred             ---------CC-hhhHH----HHHHHHHHhhhh---CCC-------cCCchhHHHHHHHHHHhhcCCcccccCCccccch
Q 032336           71 ---------LD-IQDKE----SVAKLVKLIDKS---NGY-------IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQ  126 (143)
Q Consensus        71 ---------~~-~~~~~----~~~~~l~~l~~~---~~~-------~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~  126 (143)
                               +. .+..+    ..+.+++.+|+.   +..       -.|||||+||.+|.+++..+.++++|   |++..
T Consensus       214 ~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D---e~t~G  290 (1391)
T KOG0065|consen  214 ARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD---EITRG  290 (1391)
T ss_pred             HhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee---ccccc
Confidence                     11 11112    456778888763   211       15999999999999999999999999   99999


Q ss_pred             hhhhhhhhc
Q 032336          127 SLAEVQEKY  135 (143)
Q Consensus       127 ~~~~~~~~~  135 (143)
                      ||-.+.-.+
T Consensus       291 LDSsTal~i  299 (1391)
T KOG0065|consen  291 LDSSTAFQI  299 (1391)
T ss_pred             ccHHHHHHH
Confidence            998776543

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.26  E-value=3.6e-12  Score=83.48  Aligned_cols=51  Identities=14%  Similarity=0.011  Sum_probs=40.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIED   62 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~   62 (143)
                      +..++|+||||||||||++++.      +|++.++|.    ++...+....++.+++++|+
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~----di~~~~~~~~~~~~~~~~q~   65 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI------KRKHRLVGD----DNVEIREDSKDELIGRNPEL   65 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeE----eHHHhhhhhcCCEEEEechh
Confidence            3678999999999999999986      789999986    44444555566667888887

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.25  E-value=3.6e-12  Score=92.36  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+||||||||||+|+|++..
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            467899999999999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.24  E-value=7.5e-12  Score=92.11  Aligned_cols=93  Identities=15%  Similarity=0.003  Sum_probs=62.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcc-hhcccccccccccCChhhHHHHHH
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC-DVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig-~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      ..++|.||||+|||||+++++-.                         ..-.++| +||.+...++          .+++
T Consensus        31 ~~~~l~G~n~~GKstll~~i~~~-------------------------~~la~~g~~vpa~~~~~~----------~~~~   75 (222)
T cd03285          31 RFLIITGPNMGGKSTYIRQIGVI-------------------------VLMAQIGCFVPCDSADIP----------IVDC   75 (222)
T ss_pred             eEEEEECCCCCChHHHHHHHHHH-------------------------HHHHHhCCCcCcccEEEe----------ccce
Confidence            35789999999999999999821                         0112233 6665533211          1122


Q ss_pred             HHHHhhhhC--CCcCCchhHHHHHHHHHH--hhcCCcccccCCccc---cchhhhhhhh
Q 032336           82 LVKLIDKSN--GYIFAGMDASAVEFSKIA--VRNVDWDYYRYPSFH---LFQSLAEVQE  133 (143)
Q Consensus        82 ~l~~l~~~~--~~~lSgGe~qrv~ia~al--~~~p~~llld~~~~~---~~~~~~~~~~  133 (143)
                      ++..++..+  ...+|.++++++.+++++  +.+|+++|+|   ||   |+.+|+....
T Consensus        76 il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLD---Ep~~gT~~lD~~~~~  131 (222)
T cd03285          76 ILARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIID---ELGRGTSTYDGFGLA  131 (222)
T ss_pred             eEeeeccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEe---cCcCCCChHHHHHHH
Confidence            233333321  123588999999999999  8999999999   99   8888876544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.22  E-value=2.1e-11  Score=92.09  Aligned_cols=39  Identities=5%  Similarity=-0.233  Sum_probs=34.9

Q ss_pred             CCchhHHHHHHHHHHh---------hcCCcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAVEFSKIAV---------RNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv~ia~al~---------~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +|+||+|++.+|++++         .+|+++++|   ||++.+|...++..
T Consensus       184 lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlD---Ep~a~LD~~~~~~l  231 (270)
T cd03242         184 GSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLD---DVLAELDLGRQAAL  231 (270)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEc---CcchhcCHHHHHHH
Confidence            5999999999999986         699999999   99999999887743

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.22  E-value=1.7e-12  Score=94.01  Aligned_cols=97  Identities=9%  Similarity=-0.080  Sum_probs=57.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc-ccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL-SLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      ..++|.|||||||||||++|++.. .+..|....               ..+..+++..|....+.   ...    .+.+
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~---------------~~~~~i~~~dqi~~~~~---~~d----~i~~   87 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP---------------AESASIPLVDRIFTRIG---AED----SISD   87 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc---------------ccccccCCcCEEEEEec---Ccc----cccC
Confidence            358999999999999999999543 233333210               01123555444332211   110    0000


Q ss_pred             HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                      .+..        + .++.+++..+.+++.+|+++++|   ||++.++.....
T Consensus        88 ~~s~--------~-~~e~~~l~~i~~~~~~~~llllD---Ep~~gld~~~~~  127 (202)
T cd03243          88 GRST--------F-MAELLELKEILSLATPRSLVLID---ELGRGTSTAEGL  127 (202)
T ss_pred             Ccee--------H-HHHHHHHHHHHHhccCCeEEEEe---cCCCCCCHHHHH
Confidence            0111        1 34556677777888999999999   998888876544

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.21  E-value=3.4e-11  Score=95.01  Aligned_cols=108  Identities=17%  Similarity=0.083  Sum_probs=67.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCc-eEEEcceeehhhhccccHHHHHhhcchhccccc---------ccccccC-
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGS-NICCSNVFYLQAVHNSACRKLTKELCDVIEDYS---------LVNFSTL-   71 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~---------l~~~~~~-   71 (143)
                      +.+..+|.||.||||++++++|.++|+.| +|..-.                  ++|=||...         ++..... 
T Consensus       368 eiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~ln------------------VSykpqkispK~~~tvR~ll~~kIr~  429 (592)
T KOG0063|consen  368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN------------------VSYKPQKISPKREGTVRQLLHTKIRD  429 (592)
T ss_pred             eeEEEEccCCcchhHHHHHHhcCCCCCccCcccccc------------------eeccccccCccccchHHHHHHHHhHh
Confidence            35678999999999999999999999876 332211                  222222211         0000000 


Q ss_pred             ChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           72 DIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        72 ~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                      .-.+..-+.++++-+.+   .++.+  +||||+|||++|.+|-..+++.+-|   ||-+-+|.+-
T Consensus       430 ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliD---EpsAylDSeQ  491 (592)
T KOG0063|consen  430 AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLID---EPSAYLDSEQ  491 (592)
T ss_pred             hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEec---CchhhcChHH
Confidence            00112233444444332   23444  6999999999999999999999999   7777666543

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.20  E-value=6.3e-11  Score=102.00  Aligned_cols=39  Identities=10%  Similarity=-0.000  Sum_probs=35.7

Q ss_pred             CCchhHHHHHHHHHHhh---cCCcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAVEFSKIAVR---NVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv~ia~al~~---~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +||||+||+.||++|+.   +|++++||   ||++.++....+.+
T Consensus       829 LSgGe~QRl~LA~aL~~~~~~p~llILD---EPtsgLD~~~~~~L  870 (924)
T TIGR00630       829 LSGGEAQRIKLAKELSKRSTGRTLYILD---EPTTGLHFDDIKKL  870 (924)
T ss_pred             CCHHHHHHHHHHHHHhhcCCCCCEEEEE---CCCCCCCHHHHHHH
Confidence            79999999999999997   59999999   99999999887754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.13  E-value=6.3e-11  Score=95.00  Aligned_cols=56  Identities=11%  Similarity=0.194  Sum_probs=40.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCc-eEEEcceeehhhhccccHHHHHhhcchhccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS-NICCSNVFYLQAVHNSACRKLTKELCDVIEDYS   64 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~   64 (143)
                      ++.++|+|||||||||||+  +++..|++| +|.++|..+.. ........+|    +|||++.
T Consensus        32 GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~-~~~~ai~~LR----~VFQ~fn   88 (504)
T TIGR03238        32 SSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS-PNKNAMETLD----EIFDGFN   88 (504)
T ss_pred             CCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC-CCHHHHHHHH----HHHHhhh
Confidence            4679999999999999999  777788888 79999974321 1222223333    8999864

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.10  E-value=5.3e-11  Score=87.08  Aligned_cols=92  Identities=16%  Similarity=0.061  Sum_probs=58.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC--CcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHH
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ--FLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVA   80 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g--~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~   80 (143)
                      ..++|.||||+|||||||.+..  ++ +..|.+.....               -.++|..|...-+     ...  +.+.
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~---------------~~~~~~d~i~~~l-----~~~--~si~   86 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADS---------------ATIGLVDKIFTRM-----SSR--ESVS   86 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCC---------------cEEeeeeeeeeee-----CCc--cChh
Confidence            3578999999999999999983  33 45565543210               1245555543211     111  1111


Q ss_pred             HHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhh
Q 032336           81 KLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLA  129 (143)
Q Consensus        81 ~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~  129 (143)
                      +.+..+         .-|-||+.++++++.+|.++++|   ||+..++.
T Consensus        87 ~~~S~f---------~~el~~l~~~l~~~~~~slvllD---E~~~gtd~  123 (213)
T cd03281          87 SGQSAF---------MIDLYQVSKALRLATRRSLVLID---EFGKGTDT  123 (213)
T ss_pred             hccchH---------HHHHHHHHHHHHhCCCCcEEEec---cccCCCCH
Confidence            111111         24789999999999999999999   99888764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.03  E-value=2.6e-10  Score=81.60  Aligned_cols=56  Identities=16%  Similarity=0.220  Sum_probs=39.4

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY   63 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~   63 (143)
                      |+..++|+||||||||||+++|++...+   .+.+.+..+    ...........+++++|++
T Consensus         1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   56 (186)
T PRK10078          1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYI----TRPASAGSENHIALSEQEF   56 (186)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEEC----CCccchhHHhheeEcHHHH
Confidence            6788999999999999999999998765   466665422    2222223445567777764

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.99  E-value=3.2e-10  Score=82.81  Aligned_cols=40  Identities=8%  Similarity=-0.024  Sum_probs=30.7

Q ss_pred             cCCchhHHHHHHHHHHhh----cCCcccccCCccccchhhhhhhhhc
Q 032336           93 IFAGMDASAVEFSKIAVR----NVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        93 ~lSgGe~qrv~ia~al~~----~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .+||||+.++++|..+|.    ..+++++|   |+++.+|...+.++
T Consensus       136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilD---Evd~~LD~~~~~~l  179 (220)
T PF02463_consen  136 FLSGGEKSLVALALLLALQRYKPSPFLILD---EVDAALDEQNRKRL  179 (220)
T ss_dssp             GS-HHHHHHHHHHHHHHHHTCS--SEEEEE---STTTTS-HHHHHHH
T ss_pred             cccccccccccccccccccccccccccccc---cccccccccccccc
Confidence            689999999999877764    56899999   89999999887754

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=3.8e-10  Score=89.76  Aligned_cols=53  Identities=6%  Similarity=-0.095  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhhh----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           77 ESVAKLVKLIDK----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        77 ~~~~~~l~~l~~----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                      .+++.+|.-++.    .++..  +|||=|-||.+||||-.+|-+|+||   ||+--|+...+
T Consensus       390 arARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLD---EPTNHLDLNAV  448 (807)
T KOG0066|consen  390 ARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLD---EPTNHLDLNAV  448 (807)
T ss_pred             hHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeec---CCcccccccee
Confidence            455666665553    24444  7999999999999999999999999   99988876543

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.93  E-value=1.1e-09  Score=78.45  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=33.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      +..++|+||||||||||+++|+++++|+.|.|.+++.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~   61 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDT   61 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence            4568999999999999999999999999999998764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR01069 mutS2 MutS2 family protein

Probab=98.83  E-value=2.6e-09  Score=90.93  Aligned_cols=96  Identities=14%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC-cccCCc-eEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHH
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF-LSLIGS-NICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVA   80 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~-~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~   80 (143)
                      ..++|.||||+|||||||++++. +.+..| .|....               ...++|+.|....     ..  +.+.+.
T Consensus       323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~---------------~~~~~~~d~i~~~-----i~--~~~si~  380 (771)
T TIGR01069       323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANE---------------HSEIPYFEEIFAD-----IG--DEQSIE  380 (771)
T ss_pred             eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCc---------------cccccchhheeee-----cC--hHhHHh
Confidence            46889999999999999999987 455555 222110               0113333332211     11  112222


Q ss_pred             HHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           81 KLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        81 ~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                      +-+..        +|+++++++.+++++ .+|.++|+|   ||.+..+....
T Consensus       381 ~~LSt--------fS~~m~~~~~il~~~-~~~sLvLlD---E~g~GtD~~eg  420 (771)
T TIGR01069       381 QNLST--------FSGHMKNISAILSKT-TENSLVLFD---ELGAGTDPDEG  420 (771)
T ss_pred             hhhhH--------HHHHHHHHHHHHHhc-CCCcEEEec---CCCCCCCHHHH
Confidence            22222        468888988887776 689999999   88888775443

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.83  E-value=2.7e-09  Score=76.36  Aligned_cols=28  Identities=21%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             EEEECCCCCcHHHHHHHHh-CCcccCCce
Q 032336            5 QVVIGPPGSGKTTYCNGMS-QFLSLIGSN   32 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~-g~~~~~~G~   32 (143)
                      +.|.||||+||||++|.++ ..+-+..|.
T Consensus         2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~   30 (185)
T smart00534        2 VIITGPNMGGKSTYLRQVGLIVIMAQIGS   30 (185)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHHHhCC
Confidence            5799999999999999997 333334443

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.81  E-value=1e-08  Score=76.67  Aligned_cols=112  Identities=9%  Similarity=0.106  Sum_probs=61.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEE--EcceeehhhhccccHHHHHhhc--chhcccccccccc--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC--CSNVFYLQAVHNSACRKLTKEL--CDVIEDYSLVNFS--------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~--~~g~~~~~~~~~~~~~~~~~~i--g~V~Q~~~l~~~~--------   69 (143)
                      +..++|+||+|+|||||++.+.+......+++.  +...    .-...+..++.+.+  .+|......-+..        
T Consensus        16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI----~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~   91 (249)
T cd01128          16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLI----DERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV   91 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEc----cCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence            356899999999999999999998876543332  2110    00112333443333  1111111100000        


Q ss_pred             ----------c----CChhhHHHHHHHHHHhhhhCCCcCCchh--------HHHHHHHHHHhhcCCcccc
Q 032336           70 ----------T----LDIQDKESVAKLVKLIDKSNGYIFAGMD--------ASAVEFSKIAVRNVDWDYY  117 (143)
Q Consensus        70 ----------~----~~~~~~~~~~~~l~~l~~~~~~~lSgGe--------~qrv~ia~al~~~p~~lll  117 (143)
                                .    .-.++..+..++.+.+....+...|||+        +||+++||++..++.+.++
T Consensus        92 ~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l  161 (249)
T cd01128          92 LEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII  161 (249)
T ss_pred             HHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe
Confidence                      0    0001122233333333334445569999        9999999998788998888

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.78  E-value=5.3e-09  Score=76.71  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|+|||||||||+||++++..
T Consensus        32 ~~~l~Gpn~sGKstllr~i~~~~   54 (216)
T cd03284          32 ILLITGPNMAGKSTYLRQVALIA   54 (216)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            57899999999999999998643

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.78  E-value=4.6e-09  Score=77.50  Aligned_cols=32  Identities=28%  Similarity=0.346  Sum_probs=29.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceE
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNI   33 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i   33 (143)
                      .+.++|.||||||||||++.|++++++.+|.+
T Consensus        33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~   64 (229)
T PRK09270         33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELP   64 (229)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence            46799999999999999999999999999983

>TIGR00235 udk uridine kinase

Probab=98.76  E-value=5.7e-09  Score=75.81  Aligned_cols=27  Identities=30%  Similarity=0.202  Sum_probs=24.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      ++.++|+||||||||||++.|++++++
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            467999999999999999999999876

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR00101 ureG urease accessory protein UreG

Probab=98.76  E-value=1.5e-08  Score=73.40  Aligned_cols=57  Identities=18%  Similarity=0.156  Sum_probs=39.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS   64 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~   64 (143)
                      +.++|+||+|||||||++.+.+.+++..+-..+.+     +........+....++++|+..
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~-----d~~~~~~~~~~~~~~~~~~~~~   58 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITN-----DIYTQEDAEFLVKNSALPPERI   58 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeC-----CcCChhHHHHHHHcCCCCcCce
Confidence            57899999999999999999998877655333332     2222233445566788888654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.76  E-value=1.2e-08  Score=72.51  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=28.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      ++.++|+|||||||||++++|++++.+    +.++|.
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd   35 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSA----KFIDGD   35 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCc
Confidence            457899999999999999999999876    477774

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.75  E-value=9.1e-09  Score=78.52  Aligned_cols=37  Identities=16%  Similarity=0.125  Sum_probs=31.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc--cCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS--LIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~--~~~G~i~~~g~   38 (143)
                      .+.+||.|||||||||++++|.+++.  |++|+|.+.+.
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~  100 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITT  100 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEec
Confidence            47899999999999999999999987  77888776443

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.75  E-value=7.2e-09  Score=83.02  Aligned_cols=62  Identities=15%  Similarity=0.007  Sum_probs=44.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc---H-HHHHhhcchhccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA---C-RKLTKELCDVIEDYS   64 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---~-~~~~~~ig~V~Q~~~   64 (143)
                      +..++|+||||||||||+++|+++.+|+.|.|.+.|.. +.++....   . ..+++.+++|+|...
T Consensus       165 Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGer-grev~e~~~~~l~~~r~rtI~vV~qsd~  230 (450)
T PRK06002        165 GQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGER-GREVREFLEDTLADNLKKAVAVVATSDE  230 (450)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccC-CccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence            35789999999999999999999999999988876420 01222111   1 123457999999755

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.73  E-value=1.7e-08  Score=76.50  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=28.7

Q ss_pred             EEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      ++|.|+||||||||++.|++++++..+.+...+
T Consensus         2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D   34 (273)
T cd02026           2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD   34 (273)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhCCCceEEEECc
Confidence            799999999999999999999988877665433

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.72  E-value=1.4e-08  Score=73.86  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=21.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|.||||+||||++++++++.
T Consensus        30 ~~~~l~G~n~~GKstll~~i~~~~   53 (204)
T cd03282          30 RFHIITGPNMSGKSTYLKQIALLA   53 (204)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            458899999999999999998763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PLN02796 D-glycerate 3-kinase

Probab=98.70  E-value=4.9e-08  Score=75.94  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=31.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g~   38 (143)
                      +.++|+|+||||||||++.|.+++++.   .|.|.++|.
T Consensus       101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf  139 (347)
T PLN02796        101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF  139 (347)
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence            459999999999999999999999874   578888885

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.69  E-value=2.6e-08  Score=71.74  Aligned_cols=32  Identities=25%  Similarity=0.242  Sum_probs=25.7

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      .++|.||||||||||.++|.+++  ..+.+.+.+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~   32 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIIS   32 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEE
Confidence            37999999999999999999988  345554444

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.66  E-value=2.7e-08  Score=71.88  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=23.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      +..++|+||||||||||+++|++.++
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            45789999999999999999999875

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.65  E-value=4.6e-08  Score=77.64  Aligned_cols=121  Identities=11%  Similarity=0.036  Sum_probs=69.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhcccc--------------cccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDY--------------SLVN   67 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~--------------~l~~   67 (143)
                      .-.+++|-||-||||-+++++|-++|.-|.-- ++     +.+..-....| ..+---|+..              ...+
T Consensus       101 ~vlglvgtngigkstAlkilagk~kpnlg~~~-~p-----p~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip  174 (592)
T KOG0063|consen  101 QVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NP-----PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP  174 (592)
T ss_pred             hhccccccCcccHHHHHHHHhCCCCCCCCCCC-CC-----cchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence            34689999999999999999999999877542 11     00000000000 0000001111              0000


Q ss_pred             c---cc----C-ChhhHHHHHHHHHHhhh---h--CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           68 F---ST----L-DIQDKESVAKLVKLIDK---S--NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        68 ~---~~----~-~~~~~~~~~~~l~~l~~---~--~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                      .   ..    . ...+.....++++.+++   .  +...+||||-||.+||++.++..++.++|   ||-+-||....
T Consensus       175 r~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFD---EpSsYLDVKQR  249 (592)
T KOG0063|consen  175 RAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFD---EPSSYLDVKQR  249 (592)
T ss_pred             HHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEec---CCcccchHHHh
Confidence            0   00    0 11122233344444433   2  33447999999999999999999999999   77677766443

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.65  E-value=3.1e-07  Score=60.74  Aligned_cols=36  Identities=33%  Similarity=0.477  Sum_probs=28.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCC-ceEEEcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG-SNICCSN   37 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~-G~i~~~g   37 (143)
                      ...+.|+||+|+||||+++.++..+.... +-++++.
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~   38 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG   38 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECC
Confidence            35688999999999999999999887654 4555544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=98.58  E-value=1.5e-07  Score=74.89  Aligned_cols=36  Identities=17%  Similarity=0.296  Sum_probs=32.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g~   38 (143)
                      +.+||.|++|||||||++.|.+++++.   .|.|.+++.
T Consensus       213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf  251 (460)
T PLN03046        213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF  251 (460)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence            678999999999999999999998776   678888885

>cd04155 Arl3 Arl3 subfamily

Probab=98.57  E-value=8.6e-08  Score=66.93  Aligned_cols=36  Identities=14%  Similarity=0.204  Sum_probs=30.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC----cccCCc----eEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF----LSLIGS----NICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~----~~~~~G----~i~~~g~   38 (143)
                      +.++|+||||||||||++.+.+.    ..|+.|    .+.++|.
T Consensus        15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~   58 (173)
T cd04155          15 PRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGF   58 (173)
T ss_pred             cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCE
Confidence            57999999999999999999997    567888    7777664

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.56  E-value=4.2e-08  Score=72.13  Aligned_cols=32  Identities=22%  Similarity=0.139  Sum_probs=26.8

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCccc--CCceEEE
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSL--IGSNICC   35 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~--~~G~i~~   35 (143)
                      .+||.||||||||||++.|.+.+.+  .++.|.+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v   34 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL   34 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence            3799999999999999999999875  4566654

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.54  E-value=5.8e-08  Score=57.45  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=23.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIG   30 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~   30 (143)
                      .+.|.||||||||||+..|.-++-+..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            588999999999999999887766554

>PRK01889 GTPase RsgA; Reviewed

Probab=98.54  E-value=8.1e-08  Score=75.38  Aligned_cols=57  Identities=16%  Similarity=0.119  Sum_probs=43.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV   66 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~   66 (143)
                      ..++|+|+||+|||||++.|+|...+..|+|.+++.    ...  . ....+.+.+++|...++
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~----~g~--~-tt~~~~l~~l~~~~~l~  252 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDS----KGR--H-TTTHRELHPLPSGGLLI  252 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcccceeeEEECCC----CCc--c-hhhhccEEEecCCCeec
Confidence            468999999999999999999999999999998763    111  1 12345577777765443

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.53  E-value=6.6e-08  Score=74.79  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=32.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      +.++|+||||+||||++..|++.+.+..++|.+.+.
T Consensus       115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~  150 (318)
T PRK10416        115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG  150 (318)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence            578999999999999999999999988889987664

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.53  E-value=8.6e-08  Score=79.07  Aligned_cols=36  Identities=28%  Similarity=0.401  Sum_probs=32.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      +..++|.||||||||||++.|++++ |..|.|.++|.
T Consensus        65 riIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy  100 (656)
T PLN02318         65 IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNY  100 (656)
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcce
Confidence            4689999999999999999999997 57889998884

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.51  E-value=1.1e-07  Score=68.58  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=28.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      +..++|+|+||+|||||++.|.|...++.|.+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~   34 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPT   34 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCcccc
Confidence            4679999999999999999999987777665543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.50  E-value=1.4e-07  Score=72.67  Aligned_cols=36  Identities=22%  Similarity=0.263  Sum_probs=32.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      +..++|.||+|||||||+++|++++++..+.+.+++
T Consensus       144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied  179 (308)
T TIGR02788       144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED  179 (308)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC
Confidence            357899999999999999999999999999888764

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.48  E-value=5.7e-07  Score=72.06  Aligned_cols=36  Identities=14%  Similarity=-0.002  Sum_probs=32.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      ..++|+|+||+|||||+++|++..+++.|.|.+.|+
T Consensus       157 qri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGe  192 (432)
T PRK06793        157 QKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGE  192 (432)
T ss_pred             cEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCC
Confidence            468999999999999999999999999998877664

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.44  E-value=2e-07  Score=65.96  Aligned_cols=32  Identities=25%  Similarity=0.226  Sum_probs=25.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      ..++|+||||||||||++.|+..+.+. |.+.+
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~   33 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGD-PRVHF   33 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEE
Confidence            457899999999999999999987554 54443

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK07429 phosphoribulokinase; Provisional

Probab=98.44  E-value=3.1e-07  Score=71.34  Aligned_cols=33  Identities=27%  Similarity=0.332  Sum_probs=28.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC   34 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~   34 (143)
                      ++.++|.|+|||||||+++.|++++.+..+.+.
T Consensus         8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi   40 (327)
T PRK07429          8 PVLLGVAGDSGCGKTTFLRGLADLLGEELVTVI   40 (327)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHhHhccCceEEE
Confidence            468999999999999999999999988766554

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.43  E-value=2.6e-07  Score=66.70  Aligned_cols=36  Identities=22%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccC-CceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLI-GSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~-~G~i~~~g~   38 (143)
                      ..++|+|+||||||||.+.|.+.+.+. .|.+.++|.
T Consensus        25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d   61 (198)
T PRK03846         25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD   61 (198)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence            578999999999999999999977554 467888874

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.43  E-value=1.1e-07  Score=67.52  Aligned_cols=32  Identities=31%  Similarity=0.519  Sum_probs=28.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHh---CCcccCCceEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS---QFLSLIGSNIC   34 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~---g~~~~~~G~i~   34 (143)
                      ..++|+||+||||||+++.|+   |+..++.|++.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~   38 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLL   38 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHH
Confidence            468999999999999999999   88778887764

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.43  E-value=2.2e-07  Score=74.69  Aligned_cols=60  Identities=15%  Similarity=0.025  Sum_probs=43.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhc-----cccHHHHHhhcchhccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVH-----NSACRKLTKELCDVIED   62 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-----~~~~~~~~~~ig~V~Q~   62 (143)
                      +..++|+|+||+|||||+++|+++.+|+.|.|.+.|+.- .++.     ......+++.+.++.+.
T Consensus       158 Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg-~ev~e~~~~~l~~~~l~r~v~vv~~~  222 (438)
T PRK07721        158 GQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERG-REVREFIERDLGPEGLKRSIVVVATS  222 (438)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCC-ccHHHHHHhhcChhhhcCeEEEEECC
Confidence            357899999999999999999999999999998865311 1111     12233466778888654

>PRK13695 putative NTPase; Provisional

Probab=98.41  E-value=6e-08  Score=68.56  Aligned_cols=95  Identities=19%  Similarity=0.209  Sum_probs=52.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHHHH
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLV   83 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~~l   83 (143)
                      .++|.|+||||||||++.+.+.+.+ .| +.+.|. ..++.     ....+..++...+  +.     . ..    ...+
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~~g~-~~~~~-----~~~~~~~~~~~~~--~~-----~-~~----~~~l   61 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKVGGF-YTEEV-----REGGKRIGFKIID--LD-----T-GE----EGIL   61 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeEEEE-EcHHH-----HhcCCccceEEEE--cC-----C-CC----eEEc
Confidence            5789999999999999998887655 45 333332 11111     0011112221111  00     0 00    0001


Q ss_pred             HHhhh-----hCC--CcCCchhHHHHHHHHHHhhcCCccccc
Q 032336           84 KLIDK-----SNG--YIFAGMDASAVEFSKIAVRNVDWDYYR  118 (143)
Q Consensus        84 ~~l~~-----~~~--~~lSgGe~qrv~ia~al~~~p~~llld  118 (143)
                      ...+.     ...  ..+|++++-++.+++....+|+++++|
T Consensus        62 ~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllD  103 (174)
T PRK13695         62 ARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIID  103 (174)
T ss_pred             cccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEE
Confidence            11111     011  125789999999888888899999999

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.41  E-value=7.2e-07  Score=61.12  Aligned_cols=33  Identities=30%  Similarity=0.506  Sum_probs=28.4

Q ss_pred             EEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      +.|.||||+||||+++.+++...+..+.+.+..
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~   34 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD   34 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence            689999999999999999998877777776544

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.40  E-value=1.8e-07  Score=73.44  Aligned_cols=25  Identities=28%  Similarity=0.309  Sum_probs=22.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      -.+.|.||+||||||++++|++.+.
T Consensus       135 glilI~GpTGSGKTTtL~aLl~~i~  159 (358)
T TIGR02524       135 GIVFITGATGSGKSTLLAAIIRELA  159 (358)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3588999999999999999999884

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>TIGR00017 cmk cytidylate kinase

Probab=98.40  E-value=2e-07  Score=68.48  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=29.4

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHh---CCcccCCceEE
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMS---QFLSLIGSNIC   34 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~---g~~~~~~G~i~   34 (143)
                      |...++|.||+||||||+++.|+   |+..+++|.++
T Consensus         1 ~~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~   37 (217)
T TIGR00017         1 MAMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMY   37 (217)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHH
Confidence            66789999999999999999999   55557888774

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=98.39  E-value=4.4e-07  Score=64.38  Aligned_cols=36  Identities=22%  Similarity=0.171  Sum_probs=29.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCC---ceEEEcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG---SNICCSN   37 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~---G~i~~~g   37 (143)
                      ...++|+|++|||||||++.|.+.+.+..   |.|...+
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~   44 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   44 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence            34789999999999999999999887643   7887755

>TIGR00606 rad50 rad50

Probab=98.39  E-value=3.1e-07  Score=82.47  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=29.5

Q ss_pred             eEEEECCCCCcHHHHHHHH----hCCcccC-CceEEEcc
Q 032336            4 GQVVIGPPGSGKTTYCNGM----SQFLSLI-GSNICCSN   37 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l----~g~~~~~-~G~i~~~g   37 (143)
                      .++|+|||||||||++.+|    .|..+|. .|.+++.+
T Consensus        30 ~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~   68 (1311)
T TIGR00606        30 LTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHD   68 (1311)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecC
Confidence            5789999999999999999    5998885 78877765

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.39  E-value=1.5e-07  Score=66.04  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=22.8

Q ss_pred             ECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            8 IGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         8 iGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      +|+|||||||+++.|++.+    |.+.+++
T Consensus         1 ~G~sGsGKSTla~~la~~l----~~~~~~~   26 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL----HAAFLDG   26 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh----CCeEEeC
Confidence            5999999999999999887    5677777

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.39  E-value=7.8e-07  Score=65.84  Aligned_cols=35  Identities=20%  Similarity=0.013  Sum_probs=27.9

Q ss_pred             eeEEEECCCCCcHHHH-HHHHhCCcccCCceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTY-CNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTL-l~~l~g~~~~~~G~i~~~g   37 (143)
                      ..+.|.|||||||||| ++.+.+..++....+++..
T Consensus        25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~   60 (230)
T PRK08533         25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST   60 (230)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            4688999999999999 6899988766655566543

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.38  E-value=5.1e-07  Score=76.33  Aligned_cols=39  Identities=13%  Similarity=0.010  Sum_probs=33.9

Q ss_pred             CCchhHHHHHHHHHHhhcC---CcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAVEFSKIAVRNV---DWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv~ia~al~~~p---~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +||||.|||-+|.-|....   -+++||   ||++.|--...++.
T Consensus       823 LSGGEaQRvKLA~EL~k~~tg~TlYiLD---EPTTGLH~~Di~kL  864 (935)
T COG0178         823 LSGGEAQRVKLAKELSKRSTGKTLYILD---EPTTGLHFDDIKKL  864 (935)
T ss_pred             ccchHHHHHHHHHHHhhccCCCeEEEeC---CCCCCCCHHHHHHH
Confidence            7999999999999999877   799999   99999876665543

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.37  E-value=2.7e-07  Score=73.93  Aligned_cols=30  Identities=10%  Similarity=0.051  Sum_probs=26.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS   31 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G   31 (143)
                      +..++|+||||||||||+++|+|+.+++.+
T Consensus       155 GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~  184 (434)
T PRK07196        155 GQRVGLMAGSGVGKSVLLGMITRYTQADVV  184 (434)
T ss_pred             ceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence            357899999999999999999999988754

>PRK08149 ATP synthase SpaL; Validated

Probab=98.36  E-value=2.5e-07  Score=73.95  Aligned_cols=37  Identities=16%  Similarity=0.012  Sum_probs=31.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCC---ceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG---SNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~---G~i~~~g~   38 (143)
                      +..++|+|+||+|||||+++|+++..++.   |.|...|.
T Consensus       151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~  190 (428)
T PRK08149        151 GQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGR  190 (428)
T ss_pred             CCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCc
Confidence            35789999999999999999999988876   77777775

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.36  E-value=3.6e-07  Score=79.22  Aligned_cols=39  Identities=8%  Similarity=-0.006  Sum_probs=35.8

Q ss_pred             CCchhHHHHHHHHHHhhcC--CcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAVEFSKIAVRNV--DWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv~ia~al~~~p--~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +||||+|||.||++|+.+|  ++++||   ||++.|+....++.
T Consensus       488 LSGGE~QRv~LA~aL~~~~~~~llILD---EPtagLD~~~~~~L  528 (924)
T TIGR00630       488 LSGGEAQRIRLATQIGSGLTGVLYVLD---EPSIGLHQRDNERL  528 (924)
T ss_pred             CCHHHHHHHHHHHHHhhCCCCcEEEEc---CCccCCCHHHHHHH
Confidence            7999999999999999986  899999   99999999887654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.34  E-value=4.2e-07  Score=64.25  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=22.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ..++|+||||||||||++.|++..+
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCc
Confidence            4689999999999999999999763

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.33  E-value=4.2e-07  Score=61.76  Aligned_cols=21  Identities=33%  Similarity=0.357  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 032336            5 QVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ++|+|++|||||||++.+.+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            689999999999999999997

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.33  E-value=5.1e-07  Score=65.52  Aligned_cols=25  Identities=32%  Similarity=0.300  Sum_probs=23.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|.|+||||||||.+.|.+.+
T Consensus         6 ~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3679999999999999999999987

>cd00879 Sar1 Sar1 subfamily

Probab=98.29  E-value=9.6e-07  Score=62.70  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=29.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC--------CcccCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ--------FLSLIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g--------~~~~~~G~i~~~g~   38 (143)
                      .+.++|+|++|||||||++.+.+        ...|..+++.+++.
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~   63 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNI   63 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCE
Confidence            35789999999999999999987        34456677777664

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.29  E-value=3.3e-07  Score=73.61  Aligned_cols=39  Identities=13%  Similarity=-0.037  Sum_probs=33.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCC---ceEEEcceee
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG---SNICCSNVFY   40 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~---G~i~~~g~~~   40 (143)
                      +..++|+|+||+|||||+++|+++.+|+.   |.|.+.|..+
T Consensus       175 Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev  216 (455)
T PRK07960        175 GQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREV  216 (455)
T ss_pred             CcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEH
Confidence            35689999999999999999999999885   7787777643

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.29  E-value=6.1e-07  Score=68.48  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      ..++++|+||+|||||++.|.|...+..|+|..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~  194 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISE  194 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence            357899999999999999999999999999875

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.29  E-value=7.7e-07  Score=68.27  Aligned_cols=33  Identities=30%  Similarity=0.339  Sum_probs=30.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      ..++++|+||+|||||++.|.|...+..|+|..
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~  197 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISE  197 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence            468899999999999999999999999999975

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.29  E-value=5.1e-07  Score=61.90  Aligned_cols=28  Identities=18%  Similarity=0.297  Sum_probs=24.3

Q ss_pred             EEEECCCCCcHHHHHHHHh--CCcccCCce
Q 032336            5 QVVIGPPGSGKTTYCNGMS--QFLSLIGSN   32 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~--g~~~~~~G~   32 (143)
                      ++|+|++|||||||++.|.  +..++.+++
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~   31 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKT   31 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCC
Confidence            6899999999999999999  676666665

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.29  E-value=8.4e-07  Score=67.66  Aligned_cols=36  Identities=22%  Similarity=0.131  Sum_probs=31.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      .+.+.|+|+||||||||++.+.+.++...+.+.+.|
T Consensus       104 ~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~g  139 (290)
T PRK10463        104 QLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEG  139 (290)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECC
Confidence            367899999999999999999998877777777777

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.25  E-value=9.3e-07  Score=60.38  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=21.8

Q ss_pred             EEEECCCCCcHHHHHHHHhCCccc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      ++|+||+|||||||++.|+..+++
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~~   25 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDP   25 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCc
Confidence            689999999999999999998654

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.25  E-value=1.1e-06  Score=79.40  Aligned_cols=35  Identities=20%  Similarity=0.121  Sum_probs=32.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      .++|+|+|||||||+|++|++++.|..|.+.|++.
T Consensus        29 ~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~   63 (1486)
T PRK04863         29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT   63 (1486)
T ss_pred             eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCc
Confidence            57899999999999999999999999999988864

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.25  E-value=1.1e-06  Score=71.73  Aligned_cols=37  Identities=24%  Similarity=0.472  Sum_probs=33.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      ++.+.|+||||||||||++.|.|+++|.+|++.++..
T Consensus       210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~  246 (506)
T PRK09862        210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESA  246 (506)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecc
Confidence            4678999999999999999999999999999887764

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.24  E-value=4.4e-06  Score=57.49  Aligned_cols=23  Identities=39%  Similarity=0.586  Sum_probs=21.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.||||.|||||||++.|.|..
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCC
Confidence            57799999999999999999976

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.24  E-value=1.1e-06  Score=63.52  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=26.9

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCccc-CCceEEEcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSL-IGSNICCSN   37 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~-~~G~i~~~g   37 (143)
                      .+.|.||+||||||+++.+.+.+.+ ..|.|....
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e   37 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE   37 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence            4789999999999999998888764 356665433

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.24  E-value=7.9e-07  Score=77.27  Aligned_cols=40  Identities=8%  Similarity=0.020  Sum_probs=36.4

Q ss_pred             CCchhHHHHHHHHHHhhcC--CcccccCCccccchhhhhhhhhcc
Q 032336           94 FAGMDASAVEFSKIAVRNV--DWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        94 lSgGe~qrv~ia~al~~~p--~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      +||||+|||+||++|+.+|  ++++||   ||++.|+....++++
T Consensus       490 LSgGE~QRv~LA~aL~~~~~~~llILD---EPtagLd~~~~~~L~  531 (943)
T PRK00349        490 LSGGEAQRIRLATQIGSGLTGVLYVLD---EPSIGLHQRDNDRLI  531 (943)
T ss_pred             CCHHHHHHHHHHHHHhhCCCCcEEEec---CCccCCCHHHHHHHH
Confidence            6999999999999999997  999999   999999998877543

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.20  E-value=1.1e-06  Score=75.16  Aligned_cols=33  Identities=12%  Similarity=0.026  Sum_probs=28.4

Q ss_pred             CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           94 FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        94 lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                      +|+++++++.|++++ .+|.++|+|   ||++..+..
T Consensus       391 fS~~m~~~~~Il~~~-~~~sLvLlD---E~~~GtDp~  423 (782)
T PRK00409        391 FSGHMTNIVRILEKA-DKNSLVLFD---ELGAGTDPD  423 (782)
T ss_pred             HHHHHHHHHHHHHhC-CcCcEEEec---CCCCCCCHH
Confidence            468999999999988 789999999   888887754

>smart00053 DYNc Dynamin, GTPase

Probab=98.20  E-value=1.3e-06  Score=65.12  Aligned_cols=32  Identities=16%  Similarity=0.148  Sum_probs=27.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC--cccCCceEEE
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF--LSLIGSNICC   35 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~--~~~~~G~i~~   35 (143)
                      .++|+|++||||||+++.|+|+  .+...|.+..
T Consensus        28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~   61 (240)
T smart00053       28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR   61 (240)
T ss_pred             eEEEEcCCCccHHHHHHHHhCCCccccCCCcccc
Confidence            5899999999999999999998  5556777653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.20  E-value=1.7e-06  Score=67.09  Aligned_cols=36  Identities=14%  Similarity=-0.011  Sum_probs=31.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      +..++|+|+||+|||||+++|++...|+.|.+..-|
T Consensus        69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iG  104 (326)
T cd01136          69 GQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIG  104 (326)
T ss_pred             CcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEe
Confidence            357899999999999999999999999988776655

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.18  E-value=2e-06  Score=68.79  Aligned_cols=36  Identities=14%  Similarity=0.009  Sum_probs=32.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      ..++|+|+||+|||||+++|++..+|+.|.|.+.|.
T Consensus       141 q~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGe  176 (418)
T TIGR03498       141 QRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGE  176 (418)
T ss_pred             cEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEee
Confidence            468999999999999999999999999998887774

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=98.17  E-value=2.3e-06  Score=66.89  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=31.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      ..+.|.||+||||||+++.|++.+++..+.+.+.+
T Consensus       163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd  197 (344)
T PRK13851        163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED  197 (344)
T ss_pred             CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence            45789999999999999999999999888888765

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.17  E-value=1.9e-06  Score=60.50  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=22.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC   34 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~   34 (143)
                      ..++++|+||+|||||++.|.+-..-..|+|.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is   67 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEIS   67 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence            35789999999999999999998766667664

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd04129 Rho2 Rho2 subfamily

Probab=98.16  E-value=2e-06  Score=61.19  Aligned_cols=25  Identities=20%  Similarity=0.224  Sum_probs=21.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHh-CCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMS-QFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~-g~~   26 (143)
                      |+.++|+|+||+|||||++.+. |..
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~   26 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEF   26 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCC
Confidence            6789999999999999999997 443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.14  E-value=1.1e-06  Score=71.45  Aligned_cols=30  Identities=23%  Similarity=0.238  Sum_probs=26.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSN   32 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~   32 (143)
                      ..++++||||+||||++..|++.+....|.
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~  286 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGA  286 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence            468999999999999999999988777664

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.14  E-value=1.8e-06  Score=60.16  Aligned_cols=29  Identities=28%  Similarity=0.422  Sum_probs=23.8

Q ss_pred             EEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      +.|+||+||||||+.+.|.+.+    |.+.+++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l----~~~~v~~   29 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL----GAKFIEG   29 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc----CCeEEeC
Confidence            4689999999999999999876    3555655

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>TIGR00368 Mg chelatase-related protein

Probab=98.14  E-value=2.4e-06  Score=69.85  Aligned_cols=37  Identities=24%  Similarity=0.441  Sum_probs=33.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      ++.+.|+||||+|||||++.|.++++|.+|++.++..
T Consensus       211 g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~  247 (499)
T TIGR00368       211 GHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETA  247 (499)
T ss_pred             CCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecc
Confidence            3578999999999999999999999999998887764

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.13  E-value=1.8e-06  Score=57.04  Aligned_cols=23  Identities=39%  Similarity=0.732  Sum_probs=20.4

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|.||+||||||+.+.|+..+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999998754

...

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.11  E-value=2.6e-06  Score=68.31  Aligned_cols=37  Identities=14%  Similarity=0.060  Sum_probs=32.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      +..++|+|+||+|||||+++|+++.+++.|.+.+.|.
T Consensus       155 GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe  191 (433)
T PRK07594        155 GQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191 (433)
T ss_pred             CCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence            3578999999999999999999999999987776663

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.09  E-value=3.6e-06  Score=67.51  Aligned_cols=35  Identities=17%  Similarity=0.023  Sum_probs=31.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      ..++|+|+||+|||||+++|++..+|+.|.+...|
T Consensus       146 q~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG  180 (422)
T TIGR02546       146 QRIGIFAGAGVGKSTLLGMIARGASADVNVIALIG  180 (422)
T ss_pred             CEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEc
Confidence            56899999999999999999999999998887755

>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase

Probab=98.08  E-value=4.5e-06  Score=65.20  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=32.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      ..+.|.|++||||||+++.++++++|..+.+.+++.
T Consensus       179 ~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~  214 (340)
T TIGR03819       179 LAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDA  214 (340)
T ss_pred             CeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCc
Confidence            467899999999999999999999999999988764

Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.

>PRK05922 type III secretion system ATPase; Validated

Probab=98.08  E-value=4.3e-06  Score=67.09  Aligned_cols=36  Identities=19%  Similarity=0.101  Sum_probs=31.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      +..++|+||||+|||||+++|++..+++.|.+..-|
T Consensus       157 GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liG  192 (434)
T PRK05922        157 GQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIG  192 (434)
T ss_pred             CcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeC
Confidence            356899999999999999999999999988886655

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.08  E-value=4.1e-06  Score=67.39  Aligned_cols=37  Identities=16%  Similarity=0.042  Sum_probs=33.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      +..++|+|+||+|||||++++++...++.|.+.+.|+
T Consensus       163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGe  199 (441)
T PRK09099        163 GQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGE  199 (441)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEcc
Confidence            3568999999999999999999999999998887774

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.08  E-value=4.2e-06  Score=67.40  Aligned_cols=36  Identities=14%  Similarity=-0.007  Sum_probs=31.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      +..++|+|+||+|||||+++|++..+++.|.+...|
T Consensus       163 Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG  198 (440)
T TIGR01026       163 GQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIG  198 (440)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEe
Confidence            357899999999999999999999999888776655

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.07  E-value=4.6e-06  Score=60.36  Aligned_cols=31  Identities=19%  Similarity=0.209  Sum_probs=25.5

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc-ccCCceEE
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL-SLIGSNIC   34 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~-~~~~G~i~   34 (143)
                      -+||+|++|+|||||++.|++.. ....+++.
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~   33 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELE   33 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEE
Confidence            37899999999999999999984 44566664

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.07  E-value=3.2e-06  Score=59.71  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=29.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-cCCceEEEcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-LIGSNICCSN   37 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-~~~G~i~~~g   37 (143)
                      .+.+.+.|++||||||+.+.|...+. +..|.+.+++
T Consensus         7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~   43 (176)
T PRK05541          7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG   43 (176)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence            35789999999999999999988764 4566777765

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.07  E-value=3e-06  Score=55.73  Aligned_cols=21  Identities=33%  Similarity=0.563  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 032336            5 QVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ++|+|+.|+|||||++.|.+.
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999999984

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK07261 topology modulation protein; Provisional

Probab=98.06  E-value=2.8e-06  Score=60.10  Aligned_cols=23  Identities=39%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|+|++|||||||.+.|+..+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998664

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.05  E-value=2.7e-06  Score=62.72  Aligned_cols=33  Identities=18%  Similarity=0.328  Sum_probs=27.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC-CcccCCceEEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ-FLSLIGSNICC   35 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g-~~~~~~G~i~~   35 (143)
                      ..++|.||||+||||+++++++ .+.+..|....
T Consensus        32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~   65 (222)
T cd03287          32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP   65 (222)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            4678999999999999999999 56677776543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=98.05  E-value=3.1e-06  Score=66.00  Aligned_cols=32  Identities=28%  Similarity=0.410  Sum_probs=28.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC   34 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~   34 (143)
                      -++.|.|+||+|||||+|++++++++..|.+.
T Consensus        26 g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~   57 (337)
T TIGR02030        26 GGVMVMGDRGTGKSTAVRALAALLPEIKAVAG   57 (337)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHhhcccccccC
Confidence            35789999999999999999999988777663

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	5e-08
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	4e-04
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	4e-04

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262

 Score = 49.3 bits (117), Expect = 5e-08
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 3  FGQVVIGPPGSGKTTYCNGMSQFL 26
             V +G  GSGKTT      ++L
Sbjct: 15 MIVVFVGTAGSGKTTLTGEFGRYL 38

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 6/50 (12%), Positives = 16/50 (32%), Gaps = 5/50 (10%)

Query: 50  RKLTKELCDVIED-YSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMD 98
             +  ++C ++ +    V    L  + +E    L  L  +     +    
Sbjct: 214 GLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE----HYCTCG 259

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Length = 194

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 6  VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65
          +V G PG GK+T    + + L   G N     + Y   +  +A +    +  D +   S+
Sbjct: 5  IVTGIPGVGKSTVLAKVKEILDNQGINN--KIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 66 VNFSTLDIQDKESVAKLVKLIDKSN 90
               L I   + +A+  +   +  
Sbjct: 63 EKQKKLQIDAAKGIAEEARAGGEGY 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.98
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.98
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.98
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.98
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.98
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.97
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.97
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.97
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.97
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.97
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.97
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.97
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.97
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.97
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.96
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.96
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.96
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.96
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.96
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.96
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.95
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.95
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.94
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.94
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.93
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.93
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.93
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.93
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.92
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.92
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.91
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.89
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.89
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.88
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.87
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.85
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.84
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.83
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.82
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.82
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.81
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.81
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.79
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.75
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.75
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.74
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.73
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.73
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.71
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.71
2og2_A	359	Putative signal recognition particle receptor; nuc	99.7
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.7
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.69
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.68
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.67
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.63
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.6
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.58
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.57
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.56
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.55
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.54
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.51
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.51
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.51
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.5
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.5
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.5
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.47
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.45
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.43
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.41
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.4
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.4
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.4
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.39
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.39
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.38
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.37
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.37
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.36
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.36
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.36
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.36
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.34
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.32
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.32
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.31
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.31
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.3
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.29
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.28
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.27
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.27
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.27
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.23
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.22
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.2
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.19
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.19
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.19
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.19
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.18
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.18
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.16
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.16
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.14
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.14
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.13
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.1
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.08
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.04
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.04
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.03
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.03
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.01
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.01
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.01
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.94
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.93
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.91
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.89
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.88
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.87
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.87
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.86
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.85
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.82
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.8
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.79
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.77
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	98.75
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.74
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.73
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.72
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.7
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.69
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.66
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.66
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.65
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.63
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.62
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.62
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.57
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.57
3kta_B	173	Chromosome segregation protein SMC; structural mai	98.55
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.48
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.47
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.46
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.38
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.37
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.36
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.35
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.34
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.33
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.33
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.33
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.33
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.32
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.31
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.31
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.29
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.29
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.28
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.28
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.26
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.24
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.23
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.23
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.2
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.2
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.2
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.19
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.19
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.19
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	98.18
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.13
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.1
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.1
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.09
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.08
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.07
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	98.07
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.07
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.07
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.06
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.06
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.05
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	98.04
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.03
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.03
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.03
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.02
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.02
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.01
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.0
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.98
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.98
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.94
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.92
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.92
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.92
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.91
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.9
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.9
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.9
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.89
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.89
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.89
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.87
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.86
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.86
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.86
1via_A	175	Shikimate kinase; structural genomics, transferase	97.86
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.86
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.86
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.84
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.83
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.81
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.81
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.79
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.79
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.79
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.78
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.78
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.77
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.77
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.76
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.76
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.75
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.75
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.74
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.74
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.74
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.74
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.73
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.72
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.72
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.72
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.71
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.71
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.7
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.69
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.69
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.69
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.68
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.68
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.68
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.68
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.68
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.68
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.67
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.67
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.67
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.67
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.67
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.66
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.66
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.66
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.65
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.65
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.65
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.65
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.65
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.64
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.64
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.64
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.63
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.63
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.63
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.63
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.62
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.62
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.62
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.62
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.61
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.6
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.6
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.59
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.59
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.59
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.59
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.58
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.58
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.58
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.58
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.57
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.57
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.57
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.57
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.57
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.57
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.56
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.56
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.56
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.56
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.55
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.55
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.55
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.55
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.55
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.55
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.55
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.54
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.54
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.54
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.53
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.53
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	97.53
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.53
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.53
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.53
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.53
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	97.53
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	97.52
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.52
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.52
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.52
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.52
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.52
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.51
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.51
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.51
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.51
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.5
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.5
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.5
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.5
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.49
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.49
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.49
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.49
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.49
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.49
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.49
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.49
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.48
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.48
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.48
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.47
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.47
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.46
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.46
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	97.46
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.46
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.46
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.46
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.46
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.46
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.46
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.46
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.45
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.45
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.45
3bos_A	242	Putative DNA replication factor; P-loop containing	97.45
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.45
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.45
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	97.44
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.44
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.44
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.44
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.43
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.43
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.43
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	97.42
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	97.42
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.41
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.41
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.41
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.4
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.4
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.4
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.38
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.37
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.35
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.34
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.34
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	97.34
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	97.34
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	97.33
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.33
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.32
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.31
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.3
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.3
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.29
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.29
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	97.29
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	97.28
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.27
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.27
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.27
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.27
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.26
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.26
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.26
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.24
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.22
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.21
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	97.21
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.2
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.19
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	97.19
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.18
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.16
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.15
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.14
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.14
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.13
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.11
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	97.11
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.11
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.1
3ice_A	422	Transcription termination factor RHO; transcriptio	97.1
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.09
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.07
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.07
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.06
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.06
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	97.05
1wxq_A	397	GTP-binding protein; structural genomics, riken st	97.04
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.04
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	97.03
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.01
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.08
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.99
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.99
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.98
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	96.97
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.97
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.97
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.97
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.96
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.96
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.96
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.91
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.9
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.89
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.88
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	96.86
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	96.86
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.85
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.82
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.82
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	96.82
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.81
3pvs_A	447	Replication-associated recombination protein A; ma	96.81
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.81
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.81
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	96.8
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.8
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	96.79
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	96.78
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	96.78
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.77
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.77
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.77
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.76
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.75
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.73
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.73
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.7
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.69
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.68
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	96.68
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.66
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.65
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.65
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.65
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.64
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.64
3co5_A	143	Putative two-component system transcriptional RES	96.63
2qgz_A	308	Helicase loader, putative primosome component; str	96.63
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	96.62
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.61

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=4e-36  Score=233.24  Aligned_cols=131  Identities=15%  Similarity=0.141  Sum_probs=104.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|+.+. .......+..|+.||||||++.+++..+           
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~-~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~  132 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT-TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL  132 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECS-SCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECC-cCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh
Confidence            4678999999999999999999999999999999997432 1122223345678999999998764322           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                        .. .+..+++.++|+.+++.   +.++  +||||||||+|||||+.+|++||+|   |||+.||...+..++
T Consensus       133 ~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlD---EPTs~LD~~~~~~i~  203 (366)
T 3tui_C          133 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD---QATSALDPATTRSIL  203 (366)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEE---STTTTSCHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCccCCHHHHHHHH
Confidence              11 23456788899998863   4555  7999999999999999999999999   999999998887654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=2.1e-35  Score=217.56  Aligned_cols=128  Identities=16%  Similarity=0.162  Sum_probs=100.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH---H-HHhhcchhccccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR---K-LTKELCDVIEDYSLVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~---~-~~~~ig~V~Q~~~l~~~~~-------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..+    ...+..   . .++.++||||++.+++..+       
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~  106 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT----NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL  106 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC----TTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEc----ccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHH
Confidence            467899999999999999999999999999999999743    333332   2 2456999999988764211       


Q ss_pred             ---------CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           71 ---------LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        71 ---------~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                               .. .+..+.+.++++.+++.    +.++  +||||||||+|||||+++|++||+|   ||++.||...++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllD---EPts~LD~~~~~~  183 (235)
T 3tif_A          107 PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILAD---QPTWALDSKTGEK  183 (235)
T ss_dssp             HHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCHHHHHH
T ss_pred             HHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHH
Confidence                     11 23345677788888763    3444  7999999999999999999999999   9999999988875


Q ss_pred             cc
Q 032336          135 YI  136 (143)
Q Consensus       135 ~~  136 (143)
                      ++
T Consensus       184 i~  185 (235)
T 3tif_A          184 IM  185 (235)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=1.7e-35  Score=229.42  Aligned_cols=130  Identities=15%  Similarity=0.149  Sum_probs=103.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      ++.++|+||||||||||||+|+|+++|++|+|.++|+.+..  ........++.+|||||++.+|+..+           
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~--~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~  107 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFS--KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGN  107 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEES--SSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTT
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcc--cccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999999999999999975421  00111224567999999998875432           


Q ss_pred             ---CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 ---LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 ---~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                         ...+..+++.++++.+++.   ++++  +||||||||+|||||+.+|++||||   ||++.||...++.+.
T Consensus       108 ~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD---EPts~LD~~~r~~l~  178 (359)
T 3fvq_A          108 GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD---EPFSALDEQLRRQIR  178 (359)
T ss_dssp             SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCHHHHHHHH
T ss_pred             cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHHH
Confidence               1234456788999998863   5555  7999999999999999999999999   999999998877543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=3.3e-35  Score=221.02  Aligned_cols=130  Identities=14%  Similarity=0.022  Sum_probs=102.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNF-----------   68 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~-----------   68 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..+.  ........+++.+|||||++.  ++..           
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~--~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~  111 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPID--YSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAV  111 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC--CSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECC--cccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHH
Confidence            4578999999999999999999999999999999997431  122334567788999999873  3310           


Q ss_pred             -ccCC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           69 -STLD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        69 -~~~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                       .... .+..+++.++++.+++.   ++++  +||||||||+|||||+.+|++||+|   ||++.||...+..++
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLD---EPts~LD~~~~~~i~  183 (275)
T 3gfo_A          112 NMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILD---EPTAGLDPMGVSEIM  183 (275)
T ss_dssp             TSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEE---CTTTTCCHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHHHHHHHH
Confidence             0111 23346788889988763   4444  7999999999999999999999999   999999998877543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=1.5e-34  Score=216.62  Aligned_cols=128  Identities=14%  Similarity=0.130  Sum_probs=105.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      ++.++|+||||||||||+|+|+|+++|++|+|.++|.    ++...+.+.+++.++|++|++.+++..+           
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  112 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQ----NLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAP  112 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTE----ETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE----ECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhh
Confidence            4678999999999999999999999999999999997    4555566677788999999987642111           


Q ss_pred             -CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhh------cCCcccccCCccccchhhhhhhhhcc
Q 032336           71 -LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVR------NVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 -~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~------~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                       ...+..+.++++++.+++.   ++++  +||||||||+|||||++      +|++||+|   ||++.||...+..++
T Consensus       113 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllD---EPts~LD~~~~~~i~  187 (266)
T 4g1u_C          113 YGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLD---EPTSALDLYHQQHTL  187 (266)
T ss_dssp             SCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEEC---CCCSSCCHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe---CccccCCHHHHHHHH
Confidence             1234456788899998863   3443  79999999999999999      99999999   999999998877543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=5.6e-35  Score=227.94  Aligned_cols=125  Identities=13%  Similarity=0.143  Sum_probs=102.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      ++.++|+||||||||||||+|+|+++|++|+|.++|+.+    ...+.  .++.||||||++.+|+..++          
T Consensus        29 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~----~~~~~--~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~  102 (381)
T 3rlf_A           29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM----NDTPP--AERGVGMVFQSYALYPHLSVAENMSFGLKL  102 (381)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTCCG--GGSCEEEECTTCCCCTTSCHHHHHTHHHHH
T ss_pred             CCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEEC----CCCCH--HHCCEEEEecCCcCCCCCCHHHHHHHHHHH
Confidence            467899999999999999999999999999999999743    22222  23579999999988754321          


Q ss_pred             ---C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         . .+..+++.++++.+++.   ++++  +||||||||+|||||+.+|++||||   ||++.||...++.+
T Consensus       103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD---EPts~LD~~~~~~l  172 (381)
T 3rlf_A          103 AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD---EPLSNLDAALRVQM  172 (381)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE---STTTTSCHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE---CCCcCCCHHHHHHH
Confidence               1 23346788889988763   5555  7999999999999999999999999   99999999877654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=1.8e-34  Score=211.18  Aligned_cols=128  Identities=13%  Similarity=0.004  Sum_probs=100.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH---HHHH-hhcchhccccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC---RKLT-KELCDVIEDYSLVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~---~~~~-~~ig~V~Q~~~l~~~~~-------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..+    ...+.   ..++ +.++||||++.+++..+       
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~  105 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV----DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIV  105 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEEC----CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC----CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHh
Confidence            357899999999999999999999999999999999733    22222   2333 67999999987664221       


Q ss_pred             ------CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 ------LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 ------~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                            .. .+..+.+.++++.+++.   +.++  +||||||||+|||||+.+|+++++|   ||++.+|...++.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~~~  180 (224)
T 2pcj_A          106 PMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFAD---EPTGNLDSANTKRVM  180 (224)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEE---STTTTCCHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCCCCCCHHHHHHHH
Confidence                  11 12345678888888764   3444  7999999999999999999999999   999999998877543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=2.6e-34  Score=214.93  Aligned_cols=130  Identities=17%  Similarity=0.207  Sum_probs=102.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..+.  ........+++.++||||++.+++..+           
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~--~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~  127 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK--AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMK  127 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS--STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC--CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999999999999999997431  112334556778999999987653211           


Q ss_pred             ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                         ... +..+.+.++++.+++.   ++++  +||||||||+|||||+.+|+++|+|   ||++.||...++.+.
T Consensus       128 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLD---EPts~LD~~~~~~~~  199 (263)
T 2olj_A          128 VRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD---EPTSALDPEMVGEVL  199 (263)
T ss_dssp             TSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEe---CCcccCCHHHHHHHH
Confidence               111 2245678888888763   4444  7999999999999999999999999   999999998887543

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=3.6e-34  Score=214.01  Aligned_cols=131  Identities=17%  Similarity=0.145  Sum_probs=101.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehh---------hhccccHHHHHhhcchhccccccccccc--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQ---------AVHNSACRKLTKELCDVIEDYSLVNFST--   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~---------~~~~~~~~~~~~~ig~V~Q~~~l~~~~~--   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..+..         .........+++.++||||++.+++..+  
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~  111 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVL  111 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHH
Confidence            45789999999999999999999999999999999974310         0111112345678999999987653211  


Q ss_pred             ------------CCh-hhHHHHHHHHHHhhh----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           71 ------------LDI-QDKESVAKLVKLIDK----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        71 ------------~~~-~~~~~~~~~l~~l~~----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                                  ... +..+.+.++++.+++    .+.++  +||||||||+|||||+.+|++||+|   ||++.||...
T Consensus       112 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD---EPts~LD~~~  188 (262)
T 1b0u_A          112 ENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFD---EPTSALDPEL  188 (262)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEE---STTTTSCHHH
T ss_pred             HHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHH
Confidence                        111 224567888888875    45555  7999999999999999999999999   9999999988


Q ss_pred             hhhc
Q 032336          132 QEKY  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      ++.+
T Consensus       189 ~~~~  192 (262)
T 1b0u_A          189 VGEV  192 (262)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=7.9e-34  Score=209.71  Aligned_cols=128  Identities=12%  Similarity=0.052  Sum_probs=100.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH-Hhhcchhccccccccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~----------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..    +...+...+ ++.++||||++.+++..+          
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~  107 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD----ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY  107 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE----CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE----CCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhh
Confidence            45789999999999999999999999999999999973    333333333 455999999987653211          


Q ss_pred             --C-ChhhHHHHHHHHHHhh-hh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 --L-DIQDKESVAKLVKLID-KS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 --~-~~~~~~~~~~~l~~l~-~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                        . ..+..+.++++++.++ +.   ++++  +||||||||+|||||+.+|+++|+|   ||++.+|...++.+.
T Consensus       108 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD---EPts~LD~~~~~~l~  179 (240)
T 1ji0_A          108 NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD---EPSLGLAPILVSEVF  179 (240)
T ss_dssp             TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE---CTTTTCCHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCCHHHHHHHH
Confidence              1 1223456778888884 63   3333  7999999999999999999999999   999999998877543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.4e-34  Score=222.52  Aligned_cols=125  Identities=16%  Similarity=0.156  Sum_probs=101.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.++|..+    ...+.  .++.++||||++.+|++.++          
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i----~~~~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~  102 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV----TELPP--KDRNVGLVFQNWALYPHMTVYKNIAFPLEL  102 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSCG--GGTTEEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEEC----CcCCH--hHCcEEEEecCcccCCCCCHHHHHHHHHHh
Confidence            357899999999999999999999999999999999743    22222  24679999999988754321          


Q ss_pred             ---Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         .. +..++++++++.+++.   ++++  +||||||||+|||||+.+|++||||   ||++.||...++.+
T Consensus       103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~LD~~~r~~l  172 (362)
T 2it1_A          103 RKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD---EPLSNLDALLRLEV  172 (362)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---SGGGGSCHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHHHHHHH
Confidence               11 2245678889988874   4554  7999999999999999999999999   99999999887754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=2.7e-34  Score=222.54  Aligned_cols=125  Identities=14%  Similarity=0.168  Sum_probs=101.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.++|..+.    ..+  ..++.++||||++.+|+..++          
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~----~~~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~  114 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVT----DLP--PQKRNVGLVFQNYALFQHMTVYDNVSFGLRE  114 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECT----TCC--GGGSSEEEECGGGCCCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECC----cCC--hhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999999999999999997432    222  134679999999888754321          


Q ss_pred             ---Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ---DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ---~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         .. +..+++.++++.+++.   ++++  +||||||||+|||||+.+|++||||   ||++.||...++.+
T Consensus       115 ~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~LD~~~r~~l  184 (355)
T 1z47_A          115 KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFD---EPFAAIDTQIRREL  184 (355)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTCCSSHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence               11 2345788889988763   5555  7999999999999999999999999   99999999887754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=6e-34  Score=212.22  Aligned_cols=127  Identities=11%  Similarity=-0.014  Sum_probs=101.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..+    .. ....+++.++||||++.+++..+           
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~----~~-~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~  115 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV----VE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF  115 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEET----TT-CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC----Cc-cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHH
Confidence            457899999999999999999999999999999999733    22 23456778999999987653211           


Q ss_pred             --CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 --LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 --~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                        ... +..+.+.++++.+++.   ++.+  +||||||||+|||||+.+|+++|+|   ||++.+|...++.+.
T Consensus       116 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD---EPts~LD~~~~~~l~  186 (256)
T 1vpl_A          116 YASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD---EPTSGLDVLNAREVR  186 (256)
T ss_dssp             HCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE---STTTTCCHHHHHHHH
T ss_pred             cCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCccccCHHHHHHHH
Confidence              111 1234677888888763   4444  7999999999999999999999999   999999998877543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=1.3e-33  Score=210.46  Aligned_cols=127  Identities=16%  Similarity=0.122  Sum_probs=100.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhcccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDYSLVNFS-----------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~~l~~~~-----------   69 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..+    ...+. ...++.++||||++.+++..           
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~  108 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI----TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEI  108 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC----TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC----CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHh
Confidence            457899999999999999999999999999999999733    32222 33466799999998765311           


Q ss_pred             c---------------CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhh
Q 032336           70 T---------------LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSL  128 (143)
Q Consensus        70 ~---------------~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~  128 (143)
                      .               .. .+..+.+.++++.+++.   +..+  +||||||||+|||||+.+|+++++|   ||++.+|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD---EPts~LD  185 (257)
T 1g6h_A          109 CPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD---EPIAGVA  185 (257)
T ss_dssp             STTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE---STTTTCC
T ss_pred             hhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCC
Confidence            0               11 12345678889988763   4444  7999999999999999999999999   9999999


Q ss_pred             hhhhhhc
Q 032336          129 AEVQEKY  135 (143)
Q Consensus       129 ~~~~~~~  135 (143)
                      ...++.+
T Consensus       186 ~~~~~~l  192 (257)
T 1g6h_A          186 PGLAHDI  192 (257)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=2.7e-34  Score=222.85  Aligned_cols=125  Identities=16%  Similarity=0.159  Sum_probs=100.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.++|..+    ...+.  .++.+|||||++.+|++.++          
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i----~~~~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~  102 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLV----NDIPP--KYREVGMVFQNYALYPHMTVFENIAFPLRA  102 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSCG--GGTTEEEECSSCCCCTTSCHHHHHHGGGSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEEC----CCCCh--hhCcEEEEecCcccCCCCCHHHHHHHHHHh
Confidence            457899999999999999999999999999999999743    22222  24679999999888753221          


Q ss_pred             -C---hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 -D---IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 -~---~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       .   .+..+++.++++.+++.   ++++  +||||||||+|||||+.+|++||||   ||++.||...++.+
T Consensus       103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD---EP~s~LD~~~r~~l  172 (359)
T 2yyz_A          103 RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD---EPLSNLDANLRMIM  172 (359)
T ss_dssp             SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHHH
Confidence             1   11235688889998763   4555  7999999999999999999999999   99999999887754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=7.9e-34  Score=213.92  Aligned_cols=128  Identities=13%  Similarity=0.065  Sum_probs=100.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhc--cccHHHHHhhcchhcccccccccc--c-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVH--NSACRKLTKELCDVIEDYSLVNFS--T-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~~~~~~~ig~V~Q~~~l~~~~--~-------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|.    ++.  ..+...+++.++||||++.++...  +       
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~----~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~  122 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK----MPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVIS  122 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTB----CCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCE----EcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHh
Confidence            4578999999999999999999999999999999996    333  334456778899999986532100  0       


Q ss_pred             -----------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           71 -----------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        71 -----------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                                 ...+..+.+.++++.+++.   ++++  +||||||||+|||||+.+|++||+|   ||++.||...++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLD---EPts~LD~~~~~~  199 (279)
T 2ihy_A          123 GAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILD---EPAAGLDFIARES  199 (279)
T ss_dssp             TC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE---STTTTCCHHHHHH
T ss_pred             hhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEe---CCccccCHHHHHH
Confidence                       1122345678888888763   4444  7999999999999999999999999   9999999988875


Q ss_pred             cc
Q 032336          135 YI  136 (143)
Q Consensus       135 ~~  136 (143)
                      ++
T Consensus       200 l~  201 (279)
T 2ihy_A          200 LL  201 (279)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=4.5e-34  Score=222.55  Aligned_cols=125  Identities=18%  Similarity=0.127  Sum_probs=96.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.++|+.+    ...+.  .++.++||||++.+|++.+           
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i----~~~~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~  110 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV----TYLPP--KDRNISMVFQSYAVWPHMTVYENIAFPLKI  110 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSCG--GGGTEEEEEC------CCCHHHHHHTTCC-
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC----CCCCh--hhCcEEEEecCcccCCCCCHHHHHHHHHHh
Confidence            457899999999999999999999999999999999743    22222  2467999999988775322           


Q ss_pred             --CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        ... +..+++.++++.+++.   ++++  +||||||||+|||||+.+|++||||   ||++.||...++.+
T Consensus       111 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~LD~~~r~~l  180 (372)
T 1v43_A          111 KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD---EPLSNLDAKLRVAM  180 (372)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE---STTTTSCHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHHHHH
Confidence              111 2245688889988763   4554  7999999999999999999999999   99999999887754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=5.4e-34  Score=222.22  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=101.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcc--ccHHHHHhhcchhcccccccccccC--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHN--SACRKLTKELCDVIEDYSLVNFSTL--------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~~~~~~~ig~V~Q~~~l~~~~~~--------   71 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.++|..+......  .+.  .++.+|||||++.+|++.++        
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~  106 (372)
T 1g29_1           29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--KDRDIAMVFQSYALYPHMTVYDNIAFPL  106 (372)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--GGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--hHCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence            457899999999999999999999999999999999744210000  111  24679999999988754321        


Q ss_pred             -----Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 -----DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 -----~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                           .. +..++++++++.+++.   ++++  +||||||||+|||||+.+|++||||   ||++.||...++.+
T Consensus       107 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~LD~~~r~~l  178 (372)
T 1g29_1          107 KLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD---EPLSNLDAKLRVRM  178 (372)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEE---CTTTTSCHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEC---CCCccCCHHHHHHH
Confidence                 11 2245678889988763   5555  7999999999999999999999999   99999999887754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=9e-34  Score=210.26  Aligned_cols=128  Identities=17%  Similarity=0.109  Sum_probs=100.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~   74 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|.    ++...+...+++.++||||++.+++..     ..  ...
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~----~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~  110 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH----DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM  110 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE----ETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE----EhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCC
Confidence            4578999999999999999999999999999999997    344445556778899999998776310     01  111


Q ss_pred             hHHHHHHHHHHhhhh---CC-------------CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDKS---NG-------------YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~---~~-------------~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ..+.+.++++.+++.   ..             ..+||||||||+|||||+.+|+++++|   ||++.+|...++.+.
T Consensus       111 ~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLD---EPts~LD~~~~~~i~  185 (247)
T 2ff7_A          111 SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD---EATSALDYESEHVIM  185 (247)
T ss_dssp             CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEEC---CCCSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHH
Confidence            234566667666542   11             247999999999999999999999999   999999998877543

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=1.9e-34  Score=223.43  Aligned_cols=130  Identities=14%  Similarity=0.182  Sum_probs=101.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.++|+.+... ........++.++||||++.+|+..+           
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~-~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~  109 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN-GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN  109 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEET-TEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccc-ccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999999744210 00001123567999999988875322           


Q ss_pred             --CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        ... +..+++.++++.+++.   ++++  +||||||||+|||||+.+|++||||   ||++.||...++.+
T Consensus       110 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLD---EP~s~LD~~~r~~l  179 (353)
T 1oxx_K          110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD---EPFSNLDARMRDSA  179 (353)
T ss_dssp             SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCGGGHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCcccCCHHHHHHH
Confidence              111 2345788899998763   4555  7999999999999999999999999   99999999887754

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=8e-34  Score=219.51  Aligned_cols=124  Identities=17%  Similarity=0.148  Sum_probs=101.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD---------   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~---------   72 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.++|+.+    ....  ..++.++||||++.+|++.++.         
T Consensus        26 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i----~~~~--~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~   99 (348)
T 3d31_A           26 GEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV----TDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM   99 (348)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEEC----TTSC--HHHHTCEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEEC----CCCc--hhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999999743    2222  2356799999999887643211         


Q ss_pred             ---hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           73 ---IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 ---~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                         ... +++.++++.+++.   ++++  +||||||||+|||||+.+|++||||   ||++.||...++.+
T Consensus       100 ~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD---EP~s~LD~~~~~~l  166 (348)
T 3d31_A          100 KKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD---EPLSALDPRTQENA  166 (348)
T ss_dssp             HCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE---SSSTTSCHHHHHHH
T ss_pred             cCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHHHHHHH
Confidence               112 5678889988763   4554  7999999999999999999999999   99999999887754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=4.9e-34  Score=210.92  Aligned_cols=125  Identities=12%  Similarity=0.126  Sum_probs=99.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc----------C-
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------L-   71 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------~-   71 (143)
                      ..++|+||||||||||+|+|+|+++|++|+|.++|..+.    ...  ..++.++||||++.+++..+          . 
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~----~~~--~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~   98 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT----PLP--PERRGIGFVPQDYALFPHLSVYRNIAYGLRNV   98 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT----TSC--TTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC----cCc--hhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc
Confidence            368999999999999999999999999999999997432    111  23467999999987764221          0 


Q ss_pred             C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           72 D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        72 ~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      . ..+.+.++++++.+++.   ++++  +||||||||+|||||+.+|+++++|   ||++.+|...++.+.
T Consensus        99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD---EPts~LD~~~~~~~~  166 (240)
T 2onk_A           99 ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD---EPLSAVDLKTKGVLM  166 (240)
T ss_dssp             CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE---STTSSCCHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHHH
Confidence            1 12245677888888763   4444  7999999999999999999999999   999999998877543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=1.2e-33  Score=215.30  Aligned_cols=128  Identities=13%  Similarity=0.119  Sum_probs=100.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.|+||||++.+|...     .+  ...
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~----~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~  155 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQ----DISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTA  155 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTE----ETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTC
T ss_pred             CCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCE----EcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccC
Confidence            4679999999999999999999999999999999997    556677788899999999999887311     01  111


Q ss_pred             hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ..+.+.++++.+++.                ...-+||||||||+|||||+.+|++||||   ||++.+|...+..++
T Consensus       156 ~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLD---EPts~LD~~~~~~i~  230 (306)
T 3nh6_A          156 GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLD---EATSALDTSNERAIQ  230 (306)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE---CCSSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEE---CCcccCCHHHHHHHH
Confidence            123444555544321                11237999999999999999999999999   999999998877543

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=2.9e-33  Score=207.80  Aligned_cols=126  Identities=13%  Similarity=0.074  Sum_probs=101.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------C---C
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------L---D   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------~---~   72 (143)
                      +..++|+||||||||||+|+|+|+++|+ |+|.++|.    ++...+...+++.++||||++.+++..+      .   .
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  100 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQ----PLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD  100 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTE----EGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCE----ECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc
Confidence            4578999999999999999999999999 99999997    3444455667788999999987653211      0   0


Q ss_pred             hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCC-------cccccCCccccchhhhhhhhhc
Q 032336           73 IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVD-------WDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 ~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~-------~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ....+.+.++++.+++.   +..+  +||||||||+|||||+.+|+       ++|+|   ||++.+|...++.+
T Consensus       101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD---EPts~LD~~~~~~l  172 (249)
T 2qi9_C          101 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD---EPMNSLDVAQQSAL  172 (249)
T ss_dssp             TTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES---STTTTCCHHHHHHH
T ss_pred             CCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE---CCcccCCHHHHHHH
Confidence            01145678889988763   3433  79999999999999999999       99999   99999999887754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.98  E-value=1.5e-33  Score=208.60  Aligned_cols=127  Identities=14%  Similarity=0.088  Sum_probs=98.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC---Ch
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL---DI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~---~~   73 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..+    ...+...+++.++||||++.+|+.     ...   ..
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~  103 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI----DNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGD  103 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEES----TTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh----hhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCC
Confidence            467999999999999999999999999999999999743    222223356779999999877631     001   11


Q ss_pred             hhHHHHHHHHHHhhhh---CC-------------CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           74 QDKESVAKLVKLIDKS---NG-------------YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        74 ~~~~~~~~~l~~l~~~---~~-------------~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ...+.+.++++.+++.   +.             ..+||||||||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       104 ~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLD---EPts~LD~~~~~~i  178 (243)
T 1mv5_A          104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLD---EATASLDSESESMV  178 (243)
T ss_dssp             SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE---CCSCSSCSSSCCHH
T ss_pred             CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEE---CCcccCCHHHHHHH
Confidence            2234567777777652   11             247999999999999999999999999   99999998877644

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.98  E-value=4.7e-33  Score=217.95  Aligned_cols=126  Identities=9%  Similarity=0.037  Sum_probs=102.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c-CChhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T-LDIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~-~~~~~   75 (143)
                      ++.++|+||||||||||||+|+|+++ ++|+|.++|+    ++...+...+++.++||||++.+|+..     . .....
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~----~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~  121 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGV----SWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHS  121 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSC----BTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCE----ECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccC
Confidence            46789999999999999999999998 8999999997    555566677788999999999887421     0 12223


Q ss_pred             HHHHHHHHHHhhh---hCCCc-------------CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           76 KESVAKLVKLIDK---SNGYI-------------FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        76 ~~~~~~~l~~l~~---~~~~~-------------lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .+.+.++++.+++   .++++             +||||||||+|||||+.+|++||||   ||++.||...++.+
T Consensus       122 ~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLD---EPts~LD~~~~~~l  194 (390)
T 3gd7_A          122 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD---EPSAHLDPVTYQII  194 (390)
T ss_dssp             HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEE---SHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHH
Confidence            4567788888765   23332             8999999999999999999999999   99999998877643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.98  E-value=4.5e-33  Score=202.62  Aligned_cols=122  Identities=14%  Similarity=0.138  Sum_probs=98.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.++|..    +.     ..++.++||||++.+++..++          
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~----~~-----~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~  105 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVP----IT-----KVKGKIFFLPEEIIVPRKISVEDYLKAVASL  105 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE----GG-----GGGGGEEEECSSCCCCTTSBHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE----hh-----hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHh
Confidence            35789999999999999999999999999999999963    22     145779999999876532110          


Q ss_pred             -C-hhhHHHHHHHHHHhhhhC--CCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 -D-IQDKESVAKLVKLIDKSN--GYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 -~-~~~~~~~~~~l~~l~~~~--~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       . ..+.+.+.++++.+++..  ..+  +||||||||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       106 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLD---EPts~LD~~~~~~l  172 (214)
T 1sgw_A          106 YGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLD---DPVVAIDEDSKHKV  172 (214)
T ss_dssp             TTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE---STTTTSCTTTHHHH
T ss_pred             cCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCCcCCCHHHHHHH
Confidence             0 112456788888887643  333  7999999999999999999999999   99999999887754

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.98  E-value=1e-32  Score=207.11  Aligned_cols=128  Identities=14%  Similarity=0.102  Sum_probs=97.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc----------cC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS----------TL   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~----------~~   71 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.++|.    ++...+...+++.++||||++.+|+..          ..
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~----~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~  120 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGE----PLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRT  120 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE----EGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCE----EcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccC
Confidence            3578999999999999999999999999999999997    344444556778899999998776310          01


Q ss_pred             Ch-hhH------HHHHHHHHHh--hhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           72 DI-QDK------ESVAKLVKLI--DKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        72 ~~-~~~------~~~~~~l~~l--~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .. +..      ..+.++++.+  ++.   +.+  .+||||+|||+|||||+.+|++||+|   ||++.||...++.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLD---EPts~LD~~~~~~i~  196 (271)
T 2ixe_A          121 PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD---NATSALDAGNQLRVQ  196 (271)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTCCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEE---CCccCCCHHHHHHHH
Confidence            11 110      1123445555  332   222  37999999999999999999999999   999999998887543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.98  E-value=1.1e-32  Score=206.35  Aligned_cols=125  Identities=12%  Similarity=0.076  Sum_probs=98.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc-cccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY-SLVNFS-----------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~-~l~~~~-----------   69 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|..+    ...   .+++.++||||++ .++...           
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~----~~~---~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~  105 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK----KGY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVK  105 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC----CHH---HHGGGEEEECSSGGGGCCCSSHHHHHHHTTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEEC----chH---HhhhhEEEEeccchhhcCCCcHHHHHHHHHH
Confidence            357899999999999999999999999999999999633    211   4667899999985 222110           


Q ss_pred             c-CC-hhhHHHHHHHHHHhhhh-----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           70 T-LD-IQDKESVAKLVKLIDKS-----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        70 ~-~~-~~~~~~~~~~l~~l~~~-----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      . .. .+..+.+.++++.+++.     +..+  +||||||||+|||||+.+|+++++|   ||++.+|...+..+.
T Consensus       106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD---EPts~LD~~~~~~l~  178 (266)
T 2yz2_A          106 NFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILD---EPLVGLDREGKTDLL  178 (266)
T ss_dssp             TTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTCCHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CccccCCHHHHHHHH
Confidence            0 11 12345678889988764     3444  7999999999999999999999999   999999998877543

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.97  E-value=2.8e-32  Score=202.49  Aligned_cols=127  Identities=16%  Similarity=0.074  Sum_probs=94.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC--cccCCceEEEcceeehhhhccccHHHH-HhhcchhcccccccccccC-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF--LSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFSTL-------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~~-------   71 (143)
                      +..++|+||||||||||+|+|+|+  ++|++|+|.++|..    +...+.... +..++||||++.+++..+.       
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  104 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGEN----ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLA  104 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE----CTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEE----CCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHH
Confidence            457899999999999999999998  88999999999973    333333333 3458999999876532110       


Q ss_pred             ---------C-hhhHHHHHHHHHHhhh-h---CCC--c-CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           72 ---------D-IQDKESVAKLVKLIDK-S---NGY--I-FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        72 ---------~-~~~~~~~~~~l~~l~~-~---~~~--~-lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                               . .+..+.+.++++.+++ .   +++  . +||||||||+|||||+.+|+++|+|   ||++.+|...++.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD---EPts~LD~~~~~~  181 (250)
T 2d2e_A          105 LQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLD---ETDSGLDIDALKV  181 (250)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEE---CGGGTTCHHHHHH
T ss_pred             HHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEe---CCCcCCCHHHHHH
Confidence                     1 1223457778888876 2   333  3 8999999999999999999999999   9999999988775


Q ss_pred             c
Q 032336          135 Y  135 (143)
Q Consensus       135 ~  135 (143)
                      +
T Consensus       182 l  182 (250)
T 2d2e_A          182 V  182 (250)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.97  E-value=2.9e-32  Score=203.53  Aligned_cols=126  Identities=14%  Similarity=0.109  Sum_probs=96.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~   74 (143)
                      +..++|+||||||||||+|+|+|+++| +|+|.++|.    ++...+...+++.++||||++.+|+..     .+  ...
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~----~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~  120 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGK----NVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA  120 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTE----EGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCE----EhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCC
Confidence            357899999999999999999999987 899999997    344445566778899999998876310     01  011


Q ss_pred             hHHHHHHHHHHhhhh--------------CC--CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           75 DKESVAKLVKLIDKS--------------NG--YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~--------------~~--~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ..+.+.++++.+++.              ..  ..+||||||||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus       121 ~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD---EPts~LD~~~~~~i  194 (260)
T 2ghi_A          121 TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD---EATSSLDSKTEYLF  194 (260)
T ss_dssp             CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEE---CCCCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHHHHHHH
Confidence            223455556554421              11  237999999999999999999999999   99999999887754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.97  E-value=6.6e-32  Score=202.26  Aligned_cols=127  Identities=12%  Similarity=0.059  Sum_probs=98.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC--cccCCceEEEcceeehhhhccccHHHH-Hhhcchhccccccccccc--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF--LSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFST--------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~--------   70 (143)
                      +..++|+||||||||||+|+|+|+  ++|++|+|.++|..    +...+...+ ++.++||||++.+++..+        
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~----i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~  121 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD----LLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA  121 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE----GGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE----CCcCCHHHHhhCCEEEEccCccccccccHHHHHHHH
Confidence            457899999999999999999999  57899999999973    333333333 345999999987653110        


Q ss_pred             ------------CCh-hhHHHHHHHHHHhhhh----CCC---cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           71 ------------LDI-QDKESVAKLVKLIDKS----NGY---IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        71 ------------~~~-~~~~~~~~~l~~l~~~----~~~---~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                                  ... +..+.+.++++.+++.    +.+   .+||||||||+|||||+.+|++||+|   ||++.+|..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLD---EPts~LD~~  198 (267)
T 2zu0_C          122 LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD---ESDSGLDID  198 (267)
T ss_dssp             HHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEE---STTTTCCHH
T ss_pred             HHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEe---CCCCCCCHH
Confidence                        011 1234677888888763    333   28999999999999999999999999   999999998


Q ss_pred             hhhhc
Q 032336          131 VQEKY  135 (143)
Q Consensus       131 ~~~~~  135 (143)
                      .++.+
T Consensus       199 ~~~~l  203 (267)
T 2zu0_C          199 ALKVV  203 (267)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88744

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.97  E-value=1.3e-31  Score=200.35  Aligned_cols=121  Identities=17%  Similarity=0.169  Sum_probs=96.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcc-hhcccccccccccC----------
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC-DVIEDYSLVNFSTL----------   71 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig-~V~Q~~~l~~~~~~----------   71 (143)
                      ..++|+||||||||||+|+|+|++ |++|+|.++|..+    ...  .. ++.++ ||||++.+ . .+.          
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~----~~~--~~-~~~i~~~v~Q~~~l-~-~tv~enl~~~~~~  100 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEV----RKI--RN-YIRYSTNLPEAYEI-G-VTVNDIVYLYEEL  100 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEG----GGC--SC-CTTEEECCGGGSCT-T-SBHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEEC----cch--HH-hhheEEEeCCCCcc-C-CcHHHHHHHhhhh
Confidence            568999999999999999999999 9999999999743    222  22 56799 99999865 2 111          


Q ss_pred             ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           72 DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        72 ~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .....+.+.++++.+++.    ++.+  +||||||||+|||||+.+|+++++|   ||++.+|...++.+.
T Consensus       101 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD---EPts~LD~~~~~~l~  168 (263)
T 2pjz_A          101 KGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLD---EPFENVDAARRHVIS  168 (263)
T ss_dssp             TCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE---CTTTTCCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCccccCHHHHHHHH
Confidence            012245677888888764    3333  7999999999999999999999999   999999998887543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.97  E-value=1.8e-31  Score=198.56  Aligned_cols=114  Identities=11%  Similarity=0.009  Sum_probs=92.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.+                 ++.++||||++.+++..+           
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-----------------~~~i~~v~q~~~~~~~~tv~enl~~~~~~   93 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-----------------YQSIGFVPQFFSSPFAYSVLDIVLMGRST   93 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-----------------CSCEEEECSCCCCSSCCBHHHHHHGGGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------------eccEEEEcCCCccCCCCCHHHHHHHhhhh
Confidence            3578999999999999999999999999999961                 245899999887652110           


Q ss_pred             -------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 -------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 -------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                             ...++.+.++++++.+++.   ++.+  +||||||||+|||||+.+|+++++|   ||++.+|...++.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD---EPts~LD~~~~~~l  167 (253)
T 2nq2_C           94 HINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD---EPTSALDLANQDIV  167 (253)
T ss_dssp             GSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES---SSSTTSCHHHHHHH
T ss_pred             hcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence                   0123345678889988763   4444  7999999999999999999999999   99999999887754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.97  E-value=5.7e-31  Score=215.24  Aligned_cols=128  Identities=17%  Similarity=0.204  Sum_probs=102.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC---Ch
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL---DI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~---~~   73 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++||||++.+|+..     ..   ..
T Consensus       369 G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~----~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~  444 (582)
T 3b5x_A          369 GKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH----DVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGE  444 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCE----EhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCC
Confidence            4679999999999999999999999999999999997    444556677888999999999877320     01   11


Q ss_pred             hhHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           74 QDKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        74 ~~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .+.+.+.++++.+++.                ....+|||||||++||||++.+|+++++|   ||++.+|...++++.
T Consensus       445 ~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlD---Epts~LD~~~~~~i~  520 (582)
T 3b5x_A          445 YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILD---EATSALDTESERAIQ  520 (582)
T ss_pred             CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHHHHHHHH
Confidence            2345567777766531                11347999999999999999999999999   999999998877543

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.97  E-value=4.8e-31  Score=215.69  Aligned_cols=128  Identities=14%  Similarity=0.180  Sum_probs=102.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC---Ch
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL---DI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~---~~   73 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++||||++.+|+..     ..   ..
T Consensus       369 G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~----~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~  444 (582)
T 3b60_A          369 GKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGH----DLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEE  444 (582)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTE----ETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCE----EccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCC
Confidence            4679999999999999999999999999999999997    455566677888999999999877310     01   11


Q ss_pred             hhHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           74 QDKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        74 ~~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .+.+.+.++++.+++.                ....+|||||||++||||++.+|+++++|   ||++.+|...++++.
T Consensus       445 ~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlD---Epts~LD~~~~~~i~  520 (582)
T 3b60_A          445 YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILD---EATSALDTESERAIQ  520 (582)
T ss_dssp             CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEE---TTTSSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE---CccccCCHHHHHHHH
Confidence            2344566677665431                12347999999999999999999999999   999999998877543

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.97  E-value=8.8e-31  Score=214.01  Aligned_cols=127  Identities=16%  Similarity=0.140  Sum_probs=100.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------cCChh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------TLDIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------~~~~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++||+|++.+|+..       .....
T Consensus       367 G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~----~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~  442 (578)
T 4a82_A          367 GETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH----NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA  442 (578)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTE----EGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCE----EhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCC
Confidence            4679999999999999999999999999999999997    556667778899999999999887321       01112


Q ss_pred             hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ..+.+.++++.+++.                ....+||||||||+||||++.+|+++++|   ||++.+|...+..+
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlD---Epts~LD~~~~~~i  516 (578)
T 4a82_A          443 TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILD---EATSALDLESESII  516 (578)
T ss_dssp             CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEE---STTTTCCHHHHHHH
T ss_pred             CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHHHHHHH
Confidence            234455555554321                11237999999999999999999999999   99999999876644

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.96  E-value=1.7e-30  Score=212.71  Aligned_cols=128  Identities=13%  Similarity=0.148  Sum_probs=100.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~   74 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...++++++||||++.+|..     ...  ...
T Consensus       369 Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~----~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~  444 (587)
T 3qf4_A          369 GSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL----DVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDA  444 (587)
T ss_dssp             TCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSS----BGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCE----EcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCC
Confidence            4679999999999999999999999999999999997    56667778889999999999988731     011  111


Q ss_pred             hHHHHHHHHHHhhh-----------h-----CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDK-----------S-----NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-----------~-----~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ..+.+.++++..++           .     ...-+|||||||++||||++.+|+++++|   ||++.+|..+++++.
T Consensus       445 ~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlD---Epts~LD~~~~~~i~  519 (587)
T 3qf4_A          445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD---DCTSSVDPITEKRIL  519 (587)
T ss_dssp             CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEE---SCCTTSCHHHHHHHH
T ss_pred             CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHHHH
Confidence            22334444443321           1     12337999999999999999999999999   999999998877554

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.96  E-value=1.3e-30  Score=191.30  Aligned_cols=115  Identities=13%  Similarity=0.064  Sum_probs=87.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC------C-hh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL------D-IQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~------~-~~   74 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|                 .++|+||++.+++. ++      . ..
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-----------------~i~~v~q~~~~~~~-tv~enl~~~~~~   95 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----------------RISFCSQFSWIMPG-TIKENIIFGVSY   95 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-----------------CEEEECSSCCCCSB-CHHHHHHTTSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-----------------EEEEEecCCcccCC-CHHHHhhccCCc
Confidence            357899999999999999999999999999999887                 28999999877642 11      0 00


Q ss_pred             hHHHHHHHHHHhhhh---C-------------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336           75 DKESVAKLVKLIDKS---N-------------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK  137 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~---~-------------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~  137 (143)
                      ......++++.+++.   .             ...+||||||||+|||||+.+|+++++|   ||++.+|...++.+++
T Consensus        96 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLD---EPts~LD~~~~~~i~~  171 (229)
T 2pze_A           96 DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFGYLDVLTEKEIFE  171 (229)
T ss_dssp             CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEE---STTTTSCHHHHHHHHH
T ss_pred             ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---CcccCCCHHHHHHHHH
Confidence            111223333333210   0             1347999999999999999999999999   9999999998885543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.96  E-value=1.7e-30  Score=191.55  Aligned_cols=114  Identities=15%  Similarity=0.117  Sum_probs=85.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--------c-cCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--------S-TLD   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--------~-~~~   72 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|.                 ++||||++.++..        . ...
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~-----------------i~~v~Q~~~~~~~tv~enl~~~~~~~   93 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS-----------------VAYVPQQAWIQNDSLRENILFGCQLE   93 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSC-----------------EEEECSSCCCCSEEHHHHHHTTSCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE-----------------EEEEcCCCcCCCcCHHHHhhCccccC
Confidence            3578999999999999999999999999999999872                 8999999765311        0 011


Q ss_pred             hhhHHHHHHH---HHHhhh--------hCC--CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           73 IQDKESVAKL---VKLIDK--------SNG--YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 ~~~~~~~~~~---l~~l~~--------~~~--~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .+..+.+.++   ++.++.        .+.  ..+||||||||+|||||+.+|+++++|   ||++.+|...+..+
T Consensus        94 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD---EPts~LD~~~~~~i  166 (237)
T 2cbz_A           94 EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD---DPLSAVDAHVGKHI  166 (237)
T ss_dssp             TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE---STTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CcccccCHHHHHHH
Confidence            1212222222   122221        122  237999999999999999999999999   99999999887744

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.96  E-value=1.9e-30  Score=212.81  Aligned_cols=127  Identities=16%  Similarity=0.165  Sum_probs=99.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+++.++||||++.+|...     ..  ...
T Consensus       381 G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~----~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~  456 (598)
T 3qf4_B          381 GQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGI----DIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA  456 (598)
T ss_dssp             TCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTE----EGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCE----EhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCC
Confidence            4679999999999999999999999999999999997    556667778899999999999887311     00  111


Q ss_pred             hHHHHHHHHHHhhh-------hC---------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           75 DKESVAKLVKLIDK-------SN---------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-------~~---------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +.+.+.++++.+++       .+         ..-+||||||||+||||++.+|+++++|   ||++.+|...+..+
T Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlD---Epts~LD~~~~~~i  530 (598)
T 3qf4_B          457 TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILD---EATSNVDTKTEKSI  530 (598)
T ss_dssp             CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEEC---CCCTTCCHHHHHHH
T ss_pred             CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---CCccCCCHHHHHHH
Confidence            12234445444322       11         1247999999999999999999999999   99999999887654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.96  E-value=6.5e-30  Score=193.47  Aligned_cols=114  Identities=13%  Similarity=0.079  Sum_probs=87.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCCh------hh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDI------QD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~------~~   75 (143)
                      +..++|+||||||||||+|+|+|+++|++|+|.++|                 .++||||++.+++. ++.+      ..
T Consensus        64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-----------------~i~~v~Q~~~l~~~-tv~enl~~~~~~  125 (290)
T 2bbs_A           64 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----------------RISFCSQNSWIMPG-TIKENIIGVSYD  125 (290)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----------------CEEEECSSCCCCSS-BHHHHHHTTCCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----------------EEEEEeCCCccCcc-cHHHHhhCcccc
Confidence            357899999999999999999999999999999876                 28999999877642 1100      01


Q ss_pred             HHHHHHHHHHhhhh-------C---------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           76 KESVAKLVKLIDKS-------N---------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        76 ~~~~~~~l~~l~~~-------~---------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ...+.++++.+++.       .         ...+||||||||+|||||+.+|+++++|   ||++.+|...++.+.
T Consensus       126 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLD---EPts~LD~~~~~~i~  199 (290)
T 2bbs_A          126 EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFGYLDVLTEKEIF  199 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEE---STTTTCCHHHHHHHH
T ss_pred             hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEE---CCcccCCHHHHHHHH
Confidence            11223333333221       0         1347999999999999999999999999   999999999888554

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.96  E-value=2.7e-29  Score=220.21  Aligned_cols=127  Identities=15%  Similarity=0.178  Sum_probs=105.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc-----c---cc-CC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN-----F---ST-LD   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~-----~---~~-~~   72 (143)
                      +.++||+||||||||||+++|.|+++|++|+|.++|.    ++...+...+|+++++|||++.+|.     +   .. ..
T Consensus      1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~----di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~ 1180 (1321)
T 4f4c_A         1105 GQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGS----EIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPS 1180 (1321)
T ss_dssp             TCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTE----ETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCE----EhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCC
Confidence            5689999999999999999999999999999999997    6778889999999999999999883     1   11 11


Q ss_pred             hhhHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           73 IQDKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 ~~~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ....+.+.++++..++       .         .+.-+|||||||++||||+..+|++|+||   |||+.+|.++...+
T Consensus      1181 ~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLD---EaTSaLD~~tE~~I 1256 (1321)
T 4f4c_A         1181 SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLD---EATSALDTESEKVV 1256 (1321)
T ss_dssp             TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEE---SCCCSTTSHHHHHH
T ss_pred             CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEe---CccccCCHHHHHHH
Confidence            2234567777777653       1         12237999999999999999999999999   99999998876544

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.95  E-value=3.8e-28  Score=213.02  Aligned_cols=125  Identities=18%  Similarity=0.217  Sum_probs=102.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~   74 (143)
                      +..++|+||||||||||+++|.|+++|++|+|.++|.    ++...+.+.+|++|+||+|++.+|.-     ..+  ...
T Consensus       444 G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~----~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~  519 (1321)
T 4f4c_A          444 GQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV----DVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGI  519 (1321)
T ss_dssp             TCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE----ETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTC
T ss_pred             CcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc----cchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccc
Confidence            4679999999999999999999999999999999997    67778889999999999999998831     111  112


Q ss_pred             hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                      +.+.+.++++..++       .         .+.-+|||||||++||||+..+|++++||   ||++.+|..+..
T Consensus       520 ~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLD---E~tSaLD~~te~  591 (1321)
T 4f4c_A          520 TREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLD---EATSALDAESEG  591 (1321)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCTTTHH
T ss_pred             hHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEe---cccccCCHHHHH
Confidence            34556666666432       1         22337999999999999999999999999   999999987643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.95  E-value=4.9e-28  Score=211.83  Aligned_cols=126  Identities=15%  Similarity=0.133  Sum_probs=98.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------cCChh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------TLDIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------~~~~~   74 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|.    ++...+...+|+.++||+|++.+|...       .....
T Consensus       416 G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~----~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~  491 (1284)
T 3g5u_A          416 GQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ----DIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDV  491 (1284)
T ss_dssp             TCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTE----EGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE----EHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCC
Confidence            4679999999999999999999999999999999997    556677888999999999999887320       00111


Q ss_pred             hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      ..+.+.++++..+.       .         ...-+||||||||+||||++.+|++|+||   ||++.+|..+...
T Consensus       492 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLD---Epts~LD~~~~~~  564 (1284)
T 3g5u_A          492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLD---EATSALDTESEAV  564 (1284)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEE---STTCSSCHHHHHH
T ss_pred             CHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCCCHHHHHH
Confidence            12334444443221       1         12237999999999999999999999999   9999999887653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.94  E-value=6.6e-28  Score=211.05  Aligned_cols=127  Identities=13%  Similarity=0.139  Sum_probs=100.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----c---cC-C
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----S---TL-D   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~---~~-~   72 (143)
                      ++.+||+||||||||||+++|.|+++|++|+|.++|.    ++...+.+.+|+.++||||++.+|..     .   .. .
T Consensus      1059 Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~----~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~ 1134 (1284)
T 3g5u_A         1059 GQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK----EIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSR 1134 (1284)
T ss_dssp             SSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSS----CTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE----EcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCC
Confidence            4689999999999999999999999999999999997    56667778889999999999987631     0   00 1


Q ss_pred             hhhHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           73 IQDKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 ~~~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ....+.+.++++..++       .         ....+||||||||+|||||+.+|++|++|   |||+.+|....+.+
T Consensus      1135 ~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLD---EpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A         1135 VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLD---EATSALDTESEKVV 1210 (1284)
T ss_dssp             CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEE---SCSSSCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence            1123344555554432       1         12347999999999999999999999999   99999999876643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.94  E-value=2e-27  Score=192.71  Aligned_cols=115  Identities=10%  Similarity=-0.030  Sum_probs=87.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----------c
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----------T   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----------~   70 (143)
                      ++.++|+||||||||||+|+|+|+++|++|+|.+++.                .++|++|+.......           .
T Consensus       294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------------~i~~~~q~~~~~~~~tv~~~l~~~~~~  357 (538)
T 3ozx_A          294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ----------------ILSYKPQRIFPNYDGTVQQYLENASKD  357 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC----------------CEEEECSSCCCCCSSBHHHHHHHHCSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe----------------eeEeechhcccccCCCHHHHHHHhhhh
Confidence            4578999999999999999999999999999987653                256777764321100           0


Q ss_pred             CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ........++++++.+++.   ++++  +||||||||+|||||+++|++||+|   |||+.||...+..+
T Consensus       358 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLD---EPT~gLD~~~~~~i  424 (538)
T 3ozx_A          358 ALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLD---QPSSYLDVEERYIV  424 (538)
T ss_dssp             TTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE---STTTTCCHHHHHHH
T ss_pred             ccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCCHHHHHHH
Confidence            1011223466777777763   4444  7999999999999999999999999   99999999877643

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.93  E-value=5.1e-27  Score=192.65  Aligned_cols=114  Identities=13%  Similarity=0.053  Sum_probs=89.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD---------   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~---------   72 (143)
                      ++.++|+||||||||||+|+|+|+++|++|+|.+.                 ..++|+||++.+.+..++.         
T Consensus       382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-----------------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~  444 (607)
T 3bk7_A          382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-----------------LTVAYKPQYIKAEYEGTVYELLSKIDSS  444 (607)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-----------------CCEEEECSSCCCCCSSBHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-----------------eEEEEEecCccCCCCCcHHHHHHhhhcc
Confidence            45799999999999999999999999999999641                 2489999987653221110         


Q ss_pred             -hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           73 -IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 -~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                       ..+.+.+.++++.+++.   ++.+  +||||||||+|||||+++|++||||   ||++.||...++.+
T Consensus       445 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD---EPt~~LD~~~~~~l  510 (607)
T 3bk7_A          445 KLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD---EPSAYLDVEQRLAV  510 (607)
T ss_dssp             HHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE---CTTTTCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCccCCCHHHHHHH
Confidence             01123466778887763   3333  7999999999999999999999999   99999999887644

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.93  E-value=3.2e-27  Score=191.60  Aligned_cols=126  Identities=13%  Similarity=0.090  Sum_probs=89.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceE---------EEcceeehhhhccccHHHH--Hhhcchhccccccccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNI---------CCSNVFYLQAVHNSACRKL--TKELCDVIEDYSLVNFST   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i---------~~~g~~~~~~~~~~~~~~~--~~~ig~V~Q~~~l~~~~~   70 (143)
                      ++.++|+||||||||||+|+|+|+++|++|++         .++|.    .+........  +..+++++|...+++...
T Consensus        47 Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~  122 (538)
T 1yqt_A           47 GMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGN----ELQNYFEKLKNGEIRPVVKPQYVDLIPKAV  122 (538)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTS----THHHHHHHHHTTSCCCEEECSCGGGSGGGC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCc----cHHHHHHHHHHHhhhhhhhhhhhhhcchhh
Confidence            46789999999999999999999999999995         23442    1111100111  124678888755433211


Q ss_pred             C-Ch-------hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           71 L-DI-------QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        71 ~-~~-------~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      . ..       +..+.+.++++.+++.   ++++  +||||||||+|||||+.+|++||||   |||+.||...++.
T Consensus       123 ~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLD---EPTs~LD~~~~~~  196 (538)
T 1yqt_A          123 KGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFD---EPSSYLDIRQRLN  196 (538)
T ss_dssp             CSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE---STTTTCCHHHHHH
T ss_pred             hccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCcccCCHHHHHH
Confidence            0 10       1113567888888864   3444  7999999999999999999999999   9999999987664

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.93  E-value=4.4e-27  Score=192.99  Aligned_cols=127  Identities=13%  Similarity=0.087  Sum_probs=90.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceE---------EEcceeehhhhccccHHHH--Hhhcchhcccccccccc-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNI---------CCSNVFYLQAVHNSACRKL--TKELCDVIEDYSLVNFS-   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i---------~~~g~~~~~~~~~~~~~~~--~~~ig~V~Q~~~l~~~~-   69 (143)
                      +..++|+||||||||||||+|+|+++|++|++         .++|.    .+........  +..+++++|...+++.. 
T Consensus       117 Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~----~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~  192 (607)
T 3bk7_A          117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN----ELQNYFERLKNGEIRPVVKPQYVDLLPKAV  192 (607)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTS----THHHHHHHHHHTSCCCEEECSCGGGGGGTC
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCE----ehhhhhhhhhhhhcceEEeechhhhchhhc
Confidence            45789999999999999999999999999996         33443    2211111111  23467778865433211 


Q ss_pred             --cCC-----hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           70 --TLD-----IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        70 --~~~-----~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        ++.     .+..+.+.++++.+++.   ++++  +||||||||+|||||+++|++||||   ||++.||...++.+
T Consensus       193 ~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLD---EPTs~LD~~~~~~l  267 (607)
T 3bk7_A          193 KGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFD---EPSSYLDIRQRLKV  267 (607)
T ss_dssp             CSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE---CTTTTCCHHHHHHH
T ss_pred             cccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCcccCCHHHHHHH
Confidence              100     01123567888888763   4444  7999999999999999999999999   99999999876643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.93  E-value=6.5e-27  Score=189.81  Aligned_cols=115  Identities=14%  Similarity=0.027  Sum_probs=88.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCCh--------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDI--------   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~--------   73 (143)
                      ++.++|+||||||||||+|+|+|+++|++|+|.+.                 ..++||||++...+..++..        
T Consensus       312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-----------------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~  374 (538)
T 1yqt_A          312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-----------------LTVAYKPQYIKADYEGTVYELLSKIDAS  374 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-----------------CCEEEECSSCCCCCSSBHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-----------------ceEEEEecCCcCCCCCcHHHHHHhhhcc
Confidence            46799999999999999999999999999999641                 24899999876532211100        


Q ss_pred             --hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           74 --QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        74 --~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                        .+.+.+.++++.+++.   ++.+  +||||||||+|||||+.+|++|++|   |||+.+|...++.+.
T Consensus       375 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD---EPt~~LD~~~~~~i~  441 (538)
T 1yqt_A          375 KLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD---EPSAYLDVEQRLAVS  441 (538)
T ss_dssp             HHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE---CTTTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCcccCCHHHHHHHH
Confidence              1123455566666553   3443  7999999999999999999999999   999999998877543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.92  E-value=1.6e-26  Score=187.49  Aligned_cols=126  Identities=13%  Similarity=0.047  Sum_probs=84.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceE-----------EEcceeehhhhccccHHHHHhh------cchhccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNI-----------CCSNVFYLQAVHNSACRKLTKE------LCDVIEDYS   64 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i-----------~~~g~~~~~~~~~~~~~~~~~~------ig~V~Q~~~   64 (143)
                      +..+||+||||||||||+|+|+|+++|++|+|           .+.|.    ++...........      +.++.+.+.
T Consensus        25 Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (538)
T 3ozx_A           25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGK----EIYNYFKELYSNELKIVHKIQYVEYASK  100 (538)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTS----TTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCe----eHHHHHHHHhhcccchhhccchhhhhhh
Confidence            46799999999999999999999999999998           34442    1111100111111      222222222


Q ss_pred             ccccccCC-----hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           65 LVNFSTLD-----IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        65 l~~~~~~~-----~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      ++. .+..     .+..+.++++++.+++.   ++.+  +||||||||+|||||+.+|++|+||   ||++.||...++.
T Consensus       101 ~~~-~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlD---EPts~LD~~~~~~  176 (538)
T 3ozx_A          101 FLK-GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFD---QPSSYLDVRERMN  176 (538)
T ss_dssp             TCC-SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE---STTTTCCHHHHHH
T ss_pred             hcc-CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHH
Confidence            111 0000     01123467778887763   4444  7999999999999999999999999   9999999987664


Q ss_pred             c
Q 032336          135 Y  135 (143)
Q Consensus       135 ~  135 (143)
                      +
T Consensus       177 l  177 (538)
T 3ozx_A          177 M  177 (538)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.7e-26  Score=186.34  Aligned_cols=126  Identities=11%  Similarity=0.018  Sum_probs=84.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEE-----------EcceeehhhhccccHHHHHhhcch--hccccccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC-----------CSNVFYLQAVHNSACRKLTKELCD--VIEDYSLVNF   68 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~-----------~~g~~~~~~~~~~~~~~~~~~ig~--V~Q~~~l~~~   68 (143)
                      +..++|+||||||||||||+|+|+++|++|+|.           +.|.    .+.........+.+..  .+|....++.
T Consensus       103 Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (608)
T 3j16_B          103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGS----ELQNYFTKMLEDDIKAIIKPQYVDNIPR  178 (608)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTS----THHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecCh----hhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence            457899999999999999999999999999983           2221    1111111112222221  1222111100


Q ss_pred             c-------------cCChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           69 S-------------TLDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        69 ~-------------~~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                      .             .......+.+.++++.+++.   ++.+  +||||||||+|||||+.+|++|+||   ||++.||..
T Consensus       179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllD---EPts~LD~~  255 (608)
T 3j16_B          179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFD---EPSSYLDVK  255 (608)
T ss_dssp             HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEE---CTTTTCCHH
T ss_pred             hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEE---CcccCCCHH
Confidence            0             00112235688889888763   3443  7999999999999999999999999   999999987


Q ss_pred             hhhh
Q 032336          131 VQEK  134 (143)
Q Consensus       131 ~~~~  134 (143)
                      .+..
T Consensus       256 ~~~~  259 (608)
T 3j16_B          256 QRLN  259 (608)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.6e-25  Score=183.72  Aligned_cols=113  Identities=12%  Similarity=-0.037  Sum_probs=85.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc----------cCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS----------TLD   72 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~----------~~~   72 (143)
                      +.++|+||||||||||+|+|+|+++|++|+.. .                +..++|++|+.......          ...
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~----------------~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~  441 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDI-P----------------KLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ  441 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-C----------------SCCEEEECSSCCCCCCSBHHHHHHHHCSST
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-c----------------CCcEEEecccccccCCccHHHHHHHHhhcc
Confidence            46899999999999999999999999999731 1                12478888875432100          001


Q ss_pred             hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           73 IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 ~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ..+...+.++++.+++.   ++++  +||||||||+|||||+++|++||+|   |||+.||...+..+
T Consensus       442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD---EPT~gLD~~~~~~i  506 (608)
T 3j16_B          442 FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID---EPSAYLDSEQRIIC  506 (608)
T ss_dssp             TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC---CTTTTCCHHHHHHH
T ss_pred             cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCCCCCCHHHHHHH
Confidence            12234567788888763   4444  7999999999999999999999999   99999998776543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.89  E-value=1.7e-24  Score=184.34  Aligned_cols=56  Identities=4%  Similarity=-0.064  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhhhh-----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           77 ESVAKLVKLIDKS-----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        77 ~~~~~~l~~l~~~-----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +.++++++.+++.     +..+  +||||||||+|||||+.+|++|+||   |||+.||......+
T Consensus       878 ~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLD---EPT~gLD~~s~~~L  940 (986)
T 2iw3_A          878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLD---EPTNYLDRDSLGAL  940 (986)
T ss_dssp             HHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEE---CGGGTCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEE---CCccCCCHHHHHHH
Confidence            4577888888762     2333  7999999999999999999999999   99999999877644

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.89  E-value=6.1e-26  Score=164.31  Aligned_cols=105  Identities=13%  Similarity=0.126  Sum_probs=72.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc--cccccc-----c-CCh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY--SLVNFS-----T-LDI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~--~l~~~~-----~-~~~   73 (143)
                      +..++|+||||||||||+++|+|+ +|++|+|..  ..+    .. .....++.++||||++  .+..+.     . ...
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~----~~-~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~   93 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IIL----TR-PAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDM   93 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEE----EE-CSCCTTCCCCSSCC------CTTTHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEe----cC-CchhhhcceEEecCCHHHHHHHHHHHHHHHHHHh
Confidence            357899999999999999999999 999999942  111    11 1112456799999986  221110     0 000


Q ss_pred             hhHHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccch
Q 032336           74 QDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQ  126 (143)
Q Consensus        74 ~~~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~  126 (143)
                      .+.+.+.++++. +        .||||||+|||||+.+|+++|+|   ||++.
T Consensus        94 ~~~~~~~~~l~~-g--------lGq~qrv~lAraL~~~p~lllLD---EPts~  134 (208)
T 3b85_A           94 VEPEVIPKLMEA-G--------IVEVAPLAYMRGRTLNDAFVILD---EAQNT  134 (208)
T ss_dssp             SCTTHHHHHHHT-T--------SEEEEEGGGGTTCCBCSEEEEEC---SGGGC
T ss_pred             ccHHHHHHHHHh-C--------CchHHHHHHHHHHhcCCCEEEEe---CCccc
Confidence            112234444443 3        39999999999999999999999   99998

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.88  E-value=2.9e-23  Score=172.02  Aligned_cols=124  Identities=12%  Similarity=0.081  Sum_probs=71.9

Q ss_pred             eeeEEEECCCCCcHHHHH---------------------HHHhCCcccCCceE-------EEcceeehhhhccccHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYC---------------------NGMSQFLSLIGSNI-------CCSNVFYLQAVHNSACRKLT   53 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl---------------------~~l~g~~~~~~G~i-------~~~g~~~~~~~~~~~~~~~~   53 (143)
                      +..++|+||||||||||+                     +++.++.+|+.|.|       .+++..    .    ....+
T Consensus        44 Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~----~----~~~~~  115 (670)
T 3ux8_A           44 GKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT----T----SRNPR  115 (670)
T ss_dssp             TSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-------------C
T ss_pred             CCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch----h----hccch
Confidence            457899999999999998                     89999999985554       444421    1    11223


Q ss_pred             hhcchhcccccccc-------------------cccC------------Chhh----HH------HHHHHHHHhhhh---
Q 032336           54 KELCDVIEDYSLVN-------------------FSTL------------DIQD----KE------SVAKLVKLIDKS---   89 (143)
Q Consensus        54 ~~ig~V~Q~~~l~~-------------------~~~~------------~~~~----~~------~~~~~l~~l~~~---   89 (143)
                      +.+++|+|.+.++.                   ..++            ....    ..      ...++++.+++.   
T Consensus       116 ~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~  195 (670)
T 3ux8_A          116 STVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLT  195 (670)
T ss_dssp             CBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCTTCC
T ss_pred             hceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhh
Confidence            45666666543210                   0000            0000    00      011235555543   


Q ss_pred             -CCCc--CCchhHHHHHHHHHHhhcCC--cccccCCccccchhhhhhhhhcc
Q 032336           90 -NGYI--FAGMDASAVEFSKIAVRNVD--WDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        90 -~~~~--lSgGe~qrv~ia~al~~~p~--~llld~~~~~~~~~~~~~~~~~~  136 (143)
                       ++++  +||||||||+|||||+++|+  +||+|   ||++.||...++.++
T Consensus       196 ~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLD---EPtsgLD~~~~~~l~  244 (670)
T 3ux8_A          196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLD---EPSIGLHQRDNDRLI  244 (670)
T ss_dssp             TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEE---CTTTTCCGGGHHHHH
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEE---CCccCCCHHHHHHHH
Confidence             3444  79999999999999999998  99999   999999998877543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.4e-24  Score=173.24  Aligned_cols=113  Identities=11%  Similarity=-0.057  Sum_probs=84.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCc-e-EEEcceeehhhhccccHHHHHhhcchhcccccccccc---cCC----
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS-N-ICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS---TLD----   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~-i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~---~~~----   72 (143)
                      +..++|+||||||||||+|+|+|+++|++| + |+++|.             .++.++++||+..++++.   +..    
T Consensus       138 Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-------------~~~~i~~vpq~~~l~~~~~~~tv~eni~  204 (460)
T 2npi_A          138 GPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-------------PQQPIFTVPGCISATPISDILDAQLPTW  204 (460)
T ss_dssp             CCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-------------TTSCSSSCSSCCEEEECCSCCCTTCTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-------------ccCCeeeeccchhhcccccccchhhhhc
Confidence            457899999999999999999999999999 9 998872             245699999997654321   100    


Q ss_pred             -------hhhHHHHHHHHHHhhhh---CCCcCCchhHHHHHHHHH--HhhcCCc----ccccCCcc-ccchhhhh
Q 032336           73 -------IQDKESVAKLVKLIDKS---NGYIFAGMDASAVEFSKI--AVRNVDW----DYYRYPSF-HLFQSLAE  130 (143)
Q Consensus        73 -------~~~~~~~~~~l~~l~~~---~~~~lSgGe~qrv~ia~a--l~~~p~~----llld~~~~-~~~~~~~~  130 (143)
                             ....+.+.++++.+++.   +...+||||+|||++|||  |+.+|++    +|+|   | |++.+|..
T Consensus       205 ~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLD---EpPts~LD~~  276 (460)
T 2npi_A          205 GQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVD---TPSISQLDEN  276 (460)
T ss_dssp             SCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEE---CCCGGGSCSS
T ss_pred             ccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEe---CCcccccChh
Confidence                   00112233344444442   222379999999999999  9999999    9999   9 99998765

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.85  E-value=8.2e-23  Score=144.52  Aligned_cols=108  Identities=13%  Similarity=0.016  Sum_probs=71.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--ccCChhhHHHHHH
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--STLDIQDKESVAK   81 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--~~~~~~~~~~~~~   81 (143)
                      .++|+||||||||||+++|+|++.     |.++|...    ........++.++|++|+......  ........     
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~----~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~-----   67 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWT----EEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSK-----   67 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEE----EEEC------CCEEEEEETTCCEEEEEETTCCCS-----
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEh----hhhccccccceeEEEeecCcHHHHHHHhhcCCcc-----
Confidence            478999999999999999999985     45556421    111111345679999997621100  00000000     


Q ss_pred             HHHHhhhhCCCc--CCchhHHHHHHHHH-----HhhcCCcccccCCcc--ccchhhhhhhh
Q 032336           82 LVKLIDKSNGYI--FAGMDASAVEFSKI-----AVRNVDWDYYRYPSF--HLFQSLAEVQE  133 (143)
Q Consensus        82 ~l~~l~~~~~~~--lSgGe~qrv~ia~a-----l~~~p~~llld~~~~--~~~~~~~~~~~  133 (143)
                           .....+.  +||||+||+++|+|     ++.+|+++++|   |  |++.++...++
T Consensus        68 -----~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilD---Eigp~~~ld~~~~~  120 (178)
T 1ye8_A           68 -----KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIID---EIGKMELFSKKFRD  120 (178)
T ss_dssp             -----SEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC---CCSTTGGGCHHHHH
T ss_pred             -----ccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEe---CCCCcccCCHHHHH
Confidence                 1222333  69999999999996     99999999999   9  99999887766

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.84  E-value=1e-21  Score=167.39  Aligned_cols=112  Identities=13%  Similarity=0.050  Sum_probs=80.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc-ccccccc--------CC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY-SLVNFST--------LD   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~-~l~~~~~--------~~   72 (143)
                      +..++|+||||||||||+|+|+|      |+|  +|.    +...      ..+++|++|++ .+++..+        ..
T Consensus       461 Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~----~~~~------~~~~~~v~q~~~~~~~~ltv~e~l~~~~~  522 (986)
T 2iw3_A          461 ARRYGICGPNGCGKSTLMRAIAN------GQV--DGF----PTQE------ECRTVYVEHDIDGTHSDTSVLDFVFESGV  522 (986)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHH------TCS--TTC----CCTT------TSCEEETTCCCCCCCTTSBHHHHHHTTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC------CCc--CCC----cccc------ceeEEEEcccccccccCCcHHHHHHHhhc
Confidence            35789999999999999999995      443  332    1100      01367888764 2221111        00


Q ss_pred             hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           73 IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 ~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .. .+.+.++++.+++.    ++++  +||||||||+|||||+.+|++||||   ||++.||...++.+
T Consensus       523 ~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD---EPTs~LD~~~~~~l  587 (986)
T 2iw3_A          523 GT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD---EPTNHLDTVNVAWL  587 (986)
T ss_dssp             SC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE---STTTTCCHHHHHHH
T ss_pred             CH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE---CCccCCCHHHHHHH
Confidence            01 45678889888762    4444  7999999999999999999999999   99999999887744

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.83  E-value=1.4e-21  Score=153.13  Aligned_cols=39  Identities=10%  Similarity=-0.152  Sum_probs=36.3

Q ss_pred             CCchhHHHHHHHHHHhhcC--CcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAVEFSKIAVRNV--DWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv~ia~al~~~p--~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +||||||||+||++|+.+|  ++||||   ||++.||...++.+
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLD---Ept~~LD~~~~~~l  336 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFD---EVDAGIGGAAAIAV  336 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEES---STTTTCCHHHHHHH
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEE---CCCCCCCHHHHHHH
Confidence            6999999999999999999  999999   99999999887744

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.82  E-value=8.1e-23  Score=153.13  Aligned_cols=124  Identities=15%  Similarity=0.051  Sum_probs=70.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      -|.++|+||||||||||+|+|+|+..|++|+|.++|..    +...   ..++.+++++|+..+++..+           
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~----i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~   74 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEK----IPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQI   74 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC----------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcc----cCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhc
Confidence            37899999999999999999999999999999999863    2111   13456999999877542211           


Q ss_pred             CChhhHHHHHHHHH-HhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 LDIQDKESVAKLVK-LIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 ~~~~~~~~~~~~l~-~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ......+.+.+.++ .+.......+||||+|||++|||++.   ++++|.+.+++..++..+..++
T Consensus        75 ~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L  137 (270)
T 3sop_A           75 NNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHL  137 (270)
T ss_dssp             BCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHH
Confidence            01111123333332 11111222379999999999999885   9999966566666665544443

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.82  E-value=5e-21  Score=158.63  Aligned_cols=56  Identities=7%  Similarity=-0.049  Sum_probs=44.2

Q ss_pred             HHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcC---CcccccCCccccchhhhhhhhhcc
Q 032336           78 SVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNV---DWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        78 ~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p---~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .+.+.++.+++.    ++++  +||||||||+|||||+++|   ++||+|   ||++.||...+..++
T Consensus       522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllD---EPt~~LD~~~~~~i~  586 (670)
T 3ux8_A          522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILD---EPTTGLHVDDIARLL  586 (670)
T ss_dssp             HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEE---STTTTCCHHHHHHHH
T ss_pred             HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEe---CCCCCCCHHHHHHHH
Confidence            445566666653    3333  7999999999999999987   499999   999999988877543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.81  E-value=5.2e-21  Score=134.03  Aligned_cols=104  Identities=13%  Similarity=0.002  Sum_probs=67.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      ++.++|+||||||||||++++.+      |...+..            ..+   .++++|++.-....   ....+....
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~------------d~~---~g~~~~~~~~~~~~---~~~~~~~~~   64 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHFK------PTEVISS------------DFC---RGLMSDDENDQTVT---GAAFDVLHY   64 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHSC------GGGEEEH------------HHH---HHHHCSSTTCGGGH---HHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHcc------CCeEEcc------------HHH---HHHhcCcccchhhH---HHHHHHHHH
Confidence            46789999999999999998553      2222211            112   27788876421111   111111111


Q ss_pred             H---HHHhhh----hCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336           82 L---VKLIDK----SNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        82 ~---l~~l~~----~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                      .   ....+.    ......|+|++|||+||||++.+|+++++|   ||++.+|..++
T Consensus        65 ~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllD---EPt~~Ld~~~~  119 (171)
T 4gp7_A           65 IVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFN---LPEKVCQERNK  119 (171)
T ss_dssp             HHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEEC---CCHHHHHHHHH
T ss_pred             HHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEe---CCHHHHHHHHh
Confidence            1   111222    133446899999999999999999999999   99999998865

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.81  E-value=3.8e-21  Score=151.49  Aligned_cols=114  Identities=15%  Similarity=0.061  Sum_probs=84.8

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc----cCCh-hhHHH
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS----TLDI-QDKES   78 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~----~~~~-~~~~~   78 (143)
                      .++|+||||||||||+|+|+|+++|++|+|.++|.    +..        + .++++|++. ++..    ...- .....
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~----~~t--------~-~~~v~q~~~-~~~ltv~D~~g~~~~~~~  136 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV----EVT--------M-ERHPYKHPN-IPNVVFWDLPGIGSTNFP  136 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------------C-CCEEEECSS-CTTEEEEECCCGGGSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe----ecc--------e-eEEeccccc-cCCeeehHhhcccchHHH
Confidence            78999999999999999999999999999998874    221        1 278888753 2111    1110 11235


Q ss_pred             HHHHHHHhhhhCC---CcCCch--hHHHHHHHHHHhh----------cCCcccccCCccccchhhhhhhhh
Q 032336           79 VAKLVKLIDKSNG---YIFAGM--DASAVEFSKIAVR----------NVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        79 ~~~~l~~l~~~~~---~~lSgG--e~qrv~ia~al~~----------~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      +.++++.+++...   ..+|+|  |+||+.+|++++.          +|+++++|   ||++.+|...+++
T Consensus       137 ~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLD---EPtsgLD~~~~~~  204 (413)
T 1tq4_A          137 PDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITN---EADGEPQTFDKEK  204 (413)
T ss_dssp             HHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHH---HHTTCCTTCCHHH
T ss_pred             HHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccC---cccccCCHHHHHH
Confidence            6778888876431   126888  9999999999999          99999999   9999988776553

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.79  E-value=3e-21  Score=147.25  Aligned_cols=103  Identities=14%  Similarity=0.088  Sum_probs=72.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc------------cc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN------------FS   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~------------~~   69 (143)
                      ++.++|+||||||||||+++|+|+++|..|.                     +.+++|+|+..+++            ..
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~---------------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g  148 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQALLARWDHH---------------------PRVDLVTTDGFLYPNAELQRRNLMHRKG  148 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHTSTTC---------------------CCEEEEEGGGGBCCHHHHHHTTCTTCTT
T ss_pred             CEEEEEECCCCchHHHHHHHHHhhccccCCC---------------------CeEEEEecCccCCcccHHHHHHHHHhcC
Confidence            4689999999999999999999999997663                     11233333322211            01


Q ss_pred             cCChhhHHHHHHHHHHhhhhC--CC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhh
Q 032336           70 TLDIQDKESVAKLVKLIDKSN--GY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSL  128 (143)
Q Consensus        70 ~~~~~~~~~~~~~l~~l~~~~--~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~  128 (143)
                      .....+.+.+.+.++.++...  ..  .+|+||+|||++|++++.+|+++++|   ||+..++
T Consensus       149 ~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlD---ep~~~~d  208 (312)
T 3aez_A          149 FPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILE---GLNVLQT  208 (312)
T ss_dssp             SGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEE---CTTTTCC
T ss_pred             CChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEEC---CccccCC
Confidence            111233456777888876211  11  27999999999999999999999999   8877653

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.75  E-value=1.5e-18  Score=132.47  Aligned_cols=39  Identities=8%  Similarity=-0.005  Sum_probs=35.1

Q ss_pred             CCchhHHHHHHHHHHh----hcCCcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAVEFSKIAV----RNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv~ia~al~----~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +|+||||||+||++|+    .+|+++++|   ||++.||...++.+
T Consensus       220 lS~Gq~q~v~ia~~l~~~~~~~~~~lllD---Ep~~~LD~~~~~~l  262 (322)
T 1e69_A          220 LSGGEKALVGLALLFALMEIKPSPFYVLD---EVDSPLDDYNAERF  262 (322)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTSCCSEEEEE---SCCSSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhccCCCCEEEEe---CCCCCCCHHHHHHH
Confidence            6999999999999998    478999999   99999999877644

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.75  E-value=1.2e-21  Score=142.27  Aligned_cols=120  Identities=15%  Similarity=0.063  Sum_probs=81.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc-HHHHHhhcchhcccccccccc----------c
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA-CRKLTKELCDVIEDYSLVNFS----------T   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~~~ig~V~Q~~~l~~~~----------~   70 (143)
                      +..++|+||||||||||+++|+|++ |  |+|.+ |..+.    ... ....++.++|+||++.+|+..          .
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~   94 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCT----TRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDN   94 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEE----CSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eeccc----CCCCCcccccCCeEEECCHHHHHHhhhccchhhhhh
Confidence            4578999999999999999999998 5  99998 65321    111 011345689999987654211          0


Q ss_pred             CC----hhhHHHHHHHHHHhhhh-CCCcCCchhHHHHHH-----HHHHhhcCCcccccCCccccchhhhhhh
Q 032336           71 LD----IQDKESVAKLVKLIDKS-NGYIFAGMDASAVEF-----SKIAVRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        71 ~~----~~~~~~~~~~l~~l~~~-~~~~lSgGe~qrv~i-----a~al~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                      +.    ......++++++..... ....+||||+||+++     +++++..|+++++|   ||++.++....
T Consensus        95 ~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Ld---e~~~~~d~~~~  163 (218)
T 1z6g_A           95 YANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLL---SRLLTRNTENQ  163 (218)
T ss_dssp             ETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHH---HHHHHTCCCCH
T ss_pred             cccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHH---HHHHhcCCCCH
Confidence            00    01123455556543321 112249999999999     88999999999999   99988876543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.74  E-value=2.5e-19  Score=137.58  Aligned_cols=81  Identities=19%  Similarity=0.074  Sum_probs=63.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      +..++|+||||||||||+++|+|+++|++|.|.++|..   .+   .....++.+++++                     
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~---e~---~~~~~~~~i~~~~---------------------  223 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE---EI---VFKHHKNYTQLFF---------------------  223 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC---CC---CCSSCSSEEEEEC---------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee---cc---ccccchhEEEEEe---------------------
Confidence            35789999999999999999999999999999998841   11   0000111222221                     


Q ss_pred             HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccc
Q 032336           82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLF  125 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~  125 (143)
                                   .|||+||++||+||..+|+++++|   ||++
T Consensus       224 -------------ggg~~~r~~la~aL~~~p~ilild---E~~~  251 (330)
T 2pt7_A          224 -------------GGNITSADCLKSCLRMRPDRIILG---ELRS  251 (330)
T ss_dssp             -------------BTTBCHHHHHHHHTTSCCSEEEEC---CCCS
T ss_pred             -------------CCChhHHHHHHHHhhhCCCEEEEc---CCCh
Confidence                         179999999999999999999999   8887

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.73  E-value=1.6e-20  Score=132.12  Aligned_cols=113  Identities=10%  Similarity=-0.033  Sum_probs=70.2

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcceeehhhhccccHHHHH-hhcc----hhcccccccccccCC
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSNVFYLQAVHNSACRKLT-KELC----DVIEDYSLVNFSTLD   72 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~-~~ig----~V~Q~~~l~~~~~~~   72 (143)
                      |...++|+|+||||||||+++|+|+++|+   .|.|.++|..+. ++.......++ +.++    +++|+..+|... ..
T Consensus         1 m~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~-~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~-~~   78 (171)
T 2f1r_A            1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDF-EIDKEGKDSWKIYNSGADVVIASPVKLAFIRR-VS   78 (171)
T ss_dssp             --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-------------CHHHHHHHHTCEEEEECSSEEEEEEE-CC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccc-cCCccchhHHHHHhcCCceEEECCCcEEEEec-CC
Confidence            55789999999999999999999999998   899999986321 11100123444 4678    788877665211 11


Q ss_pred             hhhHHHHHHHHHH-hh-h--hCCCcCCchhHHHHHHHHHHhhcCCcc
Q 032336           73 IQDKESVAKLVKL-ID-K--SNGYIFAGMDASAVEFSKIAVRNVDWD  115 (143)
Q Consensus        73 ~~~~~~~~~~l~~-l~-~--~~~~~lSgGe~qrv~ia~al~~~p~~l  115 (143)
                      .+....+.+.++. +. +  ....-+||||+||++||||+..+|++.
T Consensus        79 ~~~~a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARall~~p~i~  125 (171)
T 2f1r_A           79 EEEGNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHFR  125 (171)
T ss_dssp             HHHHTCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSGGGGGGGC
T ss_pred             hhhhhCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecccCCCccC
Confidence            1111134455554 32 1  111127999999999999999999874

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.73  E-value=1.9e-19  Score=136.69  Aligned_cols=121  Identities=13%  Similarity=0.031  Sum_probs=76.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH--Hhhcchhccccc-ccccccCChhhHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL--TKELCDVIEDYS-LVNFSTLDIQDKES   78 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~--~~~ig~V~Q~~~-l~~~~~~~~~~~~~   78 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.+.|.+....-.....+.+  +..++|++|++. +++....    .+.
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v----~e~  175 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL----SKA  175 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHH----HHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHH----HHH
Confidence            467899999999999999999999999999999998632110000011223  346999999876 5432211    011


Q ss_pred             HHHHH---------HHhhhhC---CCc--CCchhHHHHHHHHHHhhcCC--cccccCCccccchhhhhhhh
Q 032336           79 VAKLV---------KLIDKSN---GYI--FAGMDASAVEFSKIAVRNVD--WDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        79 ~~~~l---------~~l~~~~---~~~--lSgGe~qrv~ia~al~~~p~--~llld~~~~~~~~~~~~~~~  133 (143)
                      +....         +.+++..   .++  +|   +||++||||++.+|+  +|++|    |++.++...+.
T Consensus       176 l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD----ptsglD~~~~~  239 (302)
T 3b9q_A          176 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD----GNTGLNMLPQA  239 (302)
T ss_dssp             HHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE----GGGGGGGHHHH
T ss_pred             HHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe----CCCCcCHHHHH
Confidence            11111         0011110   000  23   899999999999999  99999    46777765554

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.71  E-value=2.1e-18  Score=145.56  Aligned_cols=56  Identities=7%  Similarity=-0.060  Sum_probs=45.6

Q ss_pred             HHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhc---CCcccccCCccccchhhhhhhhhc
Q 032336           77 ESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRN---VDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        77 ~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~---p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ..+.++++.+++.    .+.+  +||||||||.||++|+.+   |++|+||   |||+.||....+++
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILD---EPTsGLD~~~~~~l  772 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLD---EPTTGLHPADVERL  772 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEE---CTTTTCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEE---CCCCCCCHHHHHHH
Confidence            3456777777763    2333  799999999999999996   7999999   99999998887754

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.71  E-value=5e-18  Score=144.25  Aligned_cols=55  Identities=7%  Similarity=-0.060  Sum_probs=44.2

Q ss_pred             HHHHHHHhhhhC----CCc--CCchhHHHHHHHHHHhhcC---CcccccCCccccchhhhhhhhhcc
Q 032336           79 VAKLVKLIDKSN----GYI--FAGMDASAVEFSKIAVRNV---DWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        79 ~~~~l~~l~~~~----~~~--lSgGe~qrv~ia~al~~~p---~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      +.++++.+++..    +.+  +||||||||+||++|+.+|   ++++||   |||+.||......+.
T Consensus       825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILD---EPTsGLD~~~~~~l~  888 (972)
T 2r6f_A          825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILD---EPTTGLHVDDIARLL  888 (972)
T ss_dssp             HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEE---CTTTTCCHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEE---CCCCCCCHHHHHHHH
Confidence            456677777632    333  7999999999999999865   999999   999999998877543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.70  E-value=1.2e-18  Score=135.01  Aligned_cols=121  Identities=13%  Similarity=0.033  Sum_probs=77.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH--Hhhcchhccccc-ccccccCChhhHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL--TKELCDVIEDYS-LVNFSTLDIQDKES   78 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~--~~~ig~V~Q~~~-l~~~~~~~~~~~~~   78 (143)
                      ++.++|+||||||||||++.|+|+++|++|+|.+.|.+....-.....+.+  +..++|++|++. +++....    .+.
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv----~e~  232 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL----SKA  232 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHH----HHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhH----HHH
Confidence            357899999999999999999999999999999998632110000011222  356999999876 5432211    011


Q ss_pred             HHHHHH---------HhhhhC---CCc--CCchhHHHHHHHHHHhhcCC--cccccCCccccchhhhhhhh
Q 032336           79 VAKLVK---------LIDKSN---GYI--FAGMDASAVEFSKIAVRNVD--WDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        79 ~~~~l~---------~l~~~~---~~~--lSgGe~qrv~ia~al~~~p~--~llld~~~~~~~~~~~~~~~  133 (143)
                      +.....         .+++..   ..+  +|   +||++||||++.+|+  +|++|    |++.++...+.
T Consensus       233 l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD----pttglD~~~~~  296 (359)
T 2og2_A          233 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD----GNTGLNMLPQA  296 (359)
T ss_dssp             HHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE----GGGGGGGHHHH
T ss_pred             HHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc----CCCCCCHHHHH
Confidence            111110         011100   000  23   899999999999999  99999    56777766554

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.70  E-value=9e-18  Score=142.78  Aligned_cols=57  Identities=7%  Similarity=-0.003  Sum_probs=45.3

Q ss_pred             HHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcC---CcccccCCccccchhhhhhhhhcc
Q 032336           77 ESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNV---DWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        77 ~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p---~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ..+.++|+.+++.    .+..  +||||+|||+|||||+.+|   ++|+||   |||+.||...++++.
T Consensus       783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILD---EPTsGLD~~~~~~L~  848 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILD---EPTVGLHFEDVRKLV  848 (916)
T ss_dssp             HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEE---STTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEE---CCCCCCCHHHHHHHH
Confidence            3456677777763    2333  7999999999999999865   799999   999999998877543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.69  E-value=2.6e-18  Score=130.60  Aligned_cols=99  Identities=16%  Similarity=0.243  Sum_probs=64.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc------cCChhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------TLDIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------~~~~~~   75 (143)
                      +..++|+||||||||||+++|+|++   +|+|...                      ++|++.+|...      .+....
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~----------------------v~q~~~lf~~ti~~~ni~~~~~~  180 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF----------------------ANHKSHFWLASLADTRAALVDDA  180 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG----------------------GGTTSGGGGGGGTTCSCEEEEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE----------------------ecCccccccccHHHHhhccCccc
Confidence            4579999999999999999999998   7888532                      33333322100      000000


Q ss_pred             HHHHHHHHHH-hh-hhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           76 KESVAKLVKL-ID-KSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        76 ~~~~~~~l~~-l~-~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ...+.+.++. +. ..+...+|||||||   |||++.+|++||       ++.+|.....++
T Consensus       181 ~~~~~~~i~~~L~~gldg~~LSgGqkQR---ARAll~~p~iLl-------Ts~LD~~~~~~i  232 (305)
T 2v9p_A          181 THACWRYFDTYLRNALDGYPVSIDRKHK---AAVQIKAPPLLV-------TSNIDVQAEDRY  232 (305)
T ss_dssp             CHHHHHHHHHTTTGGGGTCCEECCCSSC---CCCEECCCCEEE-------EESSCSTTCGGG
T ss_pred             cHHHHHHHHHHhHccCCccCcCHHHHHH---HHHHhCCCCEEE-------ECCCCHHHHHHH
Confidence            1134444554 31 12244589999999   999999999999       346777665544

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.67  E-value=4.3e-18  Score=129.38  Aligned_cols=112  Identities=12%  Similarity=0.118  Sum_probs=71.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH--HhhcchhcccccccccccCChhhHHHHH
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL--TKELCDVIEDYSLVNFSTLDIQDKESVA   80 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~--~~~ig~V~Q~~~l~~~~~~~~~~~~~~~   80 (143)
                      ..++|+||||||||||+++|+|+++|++|+|.+.|.+....-.......+  +..+++++|++.+++....    .+.+.
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v----~~~v~  178 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALA----YDAVQ  178 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHH----HHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHH----HHHHH
Confidence            57899999999999999999999999999999998633211001112222  3568999998876432211    11111


Q ss_pred             HHHH-Hhh-----hhCCC-----cCCchhHHHHHHHHHHhhcCC--ccccc
Q 032336           81 KLVK-LID-----KSNGY-----IFAGMDASAVEFSKIAVRNVD--WDYYR  118 (143)
Q Consensus        81 ~~l~-~l~-----~~~~~-----~lSgGe~qrv~ia~al~~~p~--~llld  118 (143)
                      .... ..+     .....     ..+..++||+++|||++.+|+  ++.+|
T Consensus       179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD  229 (304)
T 1rj9_A          179 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD  229 (304)
T ss_dssp             HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE
T ss_pred             HHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence            1111 111     11111     024567899999999999999  55566

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.63  E-value=3.7e-16  Score=121.36  Aligned_cols=39  Identities=15%  Similarity=0.083  Sum_probs=35.9

Q ss_pred             CCchhHHHHHHHHHHh------hcCCcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAVEFSKIAV------RNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv~ia~al~------~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +||||+|||+||+||+      .+|+++|+|   ||++.||...++.+
T Consensus       280 LSgGe~qr~~la~al~~~~~~~~~p~~lllD---Ept~~LD~~~~~~~  324 (365)
T 3qf7_A          280 LSGGERALISISLAMSLAEVASGRLDAFFID---EGFSSLDTENKEKI  324 (365)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTTTCCEEEEE---SCCTTSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhcccCCCCEEEEe---CCCccCCHHHHHHH
Confidence            7999999999999999      699999999   99999999887643

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.60  E-value=2e-16  Score=117.80  Aligned_cols=83  Identities=16%  Similarity=0.117  Sum_probs=58.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccC-CceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI-GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVA   80 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~   80 (143)
                      +..++|+||||||||||+++|+|+++|+ +|+|.++|.    +            +.|++|....+...    .      
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~----~------------i~~~~~~~~~~v~q----~------   78 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED----P------------IEYVFKHKKSIVNQ----R------   78 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES----S------------CCSCCCCSSSEEEE----E------
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC----c------------ceeecCCcceeeeH----H------
Confidence            3578999999999999999999999998 999998874    2            23444432111000    0      


Q ss_pred             HHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCcccc
Q 032336           81 KLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHL  124 (143)
Q Consensus        81 ~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~  124 (143)
                          .+++..       ..-|++||++|+++|+++++|   ||+
T Consensus        79 ----~~gl~~-------~~l~~~la~aL~~~p~illlD---Ep~  108 (261)
T 2eyu_A           79 ----EVGEDT-------KSFADALRAALREDPDVIFVG---EMR  108 (261)
T ss_dssp             ----EBTTTB-------SCHHHHHHHHHHHCCSEEEES---CCC
T ss_pred             ----HhCCCH-------HHHHHHHHHHHhhCCCEEEeC---CCC
Confidence                111110       122899999999999999999   886

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.58  E-value=5.2e-17  Score=116.38  Aligned_cols=109  Identities=16%  Similarity=0.110  Sum_probs=64.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      ++.++|+||||||||||+++|+|++.|.-+-|.-+.. . ......+...   ...+.+..        ....+.+.+.+
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~-~-~~~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~   72 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY-Y-KDLGHLPLEE---RLRVNYDH--------PDAFDLALYLE   72 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC-B-CCCTTSCHHH---HHHSCTTS--------GGGBCHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc-c-cCcccccHHH---hcCCCCCC--------hhhhhHHHHHH
Confidence            4679999999999999999999998751111111110 0 0001111111   11111110        11123445667


Q ss_pred             HHHHhhhh-----CCCcCCchh----HHHHHHHHHHhhcCCcccccCCccccch
Q 032336           82 LVKLIDKS-----NGYIFAGMD----ASAVEFSKIAVRNVDWDYYRYPSFHLFQ  126 (143)
Q Consensus        82 ~l~~l~~~-----~~~~lSgGe----~qrv~ia~al~~~p~~llld~~~~~~~~  126 (143)
                      +++.++..     ..+.+|+|+    +||++++++++.+|.++++|   ||++.
T Consensus        73 ~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~d---e~~~~  123 (211)
T 3asz_A           73 HAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYP---KELRD  123 (211)
T ss_dssp             HHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSS---HHHHT
T ss_pred             HHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccC---HHHHH
Confidence            77776653     222357775    47889999999999999999   88876

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.57  E-value=1.3e-17  Score=136.97  Aligned_cols=117  Identities=12%  Similarity=0.078  Sum_probs=63.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCccc-CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHHH
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSL-IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKL   82 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~~   82 (143)
                      .++|+|||||||||||++|+|+..| ++|.|.++|..+.. ........+++.++|+||++.++++.++    .+.+...
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~-~~~~~~~~~~~~i~~v~Q~~~l~~~~tv----~e~i~~~  121 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL-KKLVNEDKWRGKVSYQDYEIEISDASEV----EKEINKA  121 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE-EECSSSSCCEEEESCC---CCCCCHHHH----HTTHHHH
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE-ecCCccccceeEEeeecccccCCCHHHH----HHHHHHH
Confidence            4899999999999999999999988 79999999974310 1111122456789999999877644322    1122222


Q ss_pred             HHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccc------cchhhhhhh
Q 032336           83 VKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFH------LFQSLAEVQ  132 (143)
Q Consensus        83 l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~------~~~~~~~~~  132 (143)
                      ...++...    .+...+.+.++.+....|+++++|   ||      ++.++...+
T Consensus       122 ~~~~~~~~----~~~s~~~i~l~i~~~~~p~LlLlD---ePGi~~~~t~~LD~~~~  170 (608)
T 3szr_A          122 QNAIAGEG----MGISHELITLEISSRDVPDLTLID---LPGITRVAVGNQPADIG  170 (608)
T ss_dssp             HHHHHCSS----SCCCSCCEEEEEEESSSCCEEEEE---CCC------CCSSCSHH
T ss_pred             HHHhcCCc----cccchHHHHHHhcCCCCCceeEee---CCCccccccCCCCHHHH
Confidence            22222111    111122333333444578888888   77      776665554

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.56  E-value=3.9e-17  Score=117.23  Aligned_cols=57  Identities=16%  Similarity=0.044  Sum_probs=38.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV   66 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~   66 (143)
                      +..++|+||||||||||+|+|+|+++    .+.+++.....  ...  ...++.++|+||++.+|
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~--~~~--~~~~~~i~~~~q~~~~~   76 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTR--APR--PGEVDGVDYHFIDPTRF   76 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESS--CCC--TTCCBTTTBEECCHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC----ceEEccccccc--CCc--ccccCCCeeEecCHHHH
Confidence            46789999999999999999999985    34444321110  000  11245699999987654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.55  E-value=5.2e-15  Score=105.27  Aligned_cols=129  Identities=12%  Similarity=-0.012  Sum_probs=73.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc-----ccCCceEEEcc-------eeehhhhccc--------cHHHHHhhcchhcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL-----SLIGSNICCSN-------VFYLQAVHNS--------ACRKLTKELCDVIE   61 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~-----~~~~G~i~~~g-------~~~~~~~~~~--------~~~~~~~~ig~V~Q   61 (143)
                      ++.++|+|+||||||||++.|+|..     .|+.|++.+.+       ..+. +....        ....+++.+++++|
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~  104 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLE  104 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE-ECCCCC------CCHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHH
Confidence            4679999999999999999999998     78888775422       1110 11111        11234455666666


Q ss_pred             ccccc-----c-cccC-ChhhHHHHHHHHHHhhhh-----CCC-cCCchhHHH-HHHHHHHhhcCCcccccCCccccchh
Q 032336           62 DYSLV-----N-FSTL-DIQDKESVAKLVKLIDKS-----NGY-IFAGMDASA-VEFSKIAVRNVDWDYYRYPSFHLFQS  127 (143)
Q Consensus        62 ~~~l~-----~-~~~~-~~~~~~~~~~~l~~l~~~-----~~~-~lSgGe~qr-v~ia~al~~~p~~llld~~~~~~~~~  127 (143)
                      .....     . .... .......+.++++..++.     +.. .+|+||+|+ +..+++++.+|.++++|   ||++.+
T Consensus       105 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~Sal  181 (210)
T 1pui_A          105 KRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV---ETFSSL  181 (210)
T ss_dssp             HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE---EECBTT
T ss_pred             hhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce---EEEeec
Confidence            43211     0 0111 111122344445444431     221 258999999 89999999999988888   999998


Q ss_pred             hhhhhhh
Q 032336          128 LAEVQEK  134 (143)
Q Consensus       128 ~~~~~~~  134 (143)
                      +....++
T Consensus       182 ~~~~~~~  188 (210)
T 1pui_A          182 KKQGVDK  188 (210)
T ss_dssp             TTBSHHH
T ss_pred             CCCCHHH
Confidence            8866554

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.54  E-value=4.4e-17  Score=116.11  Aligned_cols=109  Identities=14%  Similarity=0.087  Sum_probs=68.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc----cccccCChhhHHH
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL----VNFSTLDIQDKES   78 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l----~~~~~~~~~~~~~   78 (143)
                      ..++|+||||||||||+++|+|+++ ++| |.++|...    ...  ..+++.++|++|+..-    +........+...
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~----~~~--~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~   73 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT----EEV--RQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKR   73 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC----CEE--ETTSSEEEEEEEETTSCEEEEEECCCCCCSSSC
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec----chh--HhhhceEEEEEEecccceehhhcccccCCcccc
Confidence            5689999999999999999999999 999 99888532    111  1246779999997521    0000000000000


Q ss_pred             HHHHHHHhhhhCCC--cCCchhHHHH-HHHH---HHhhcCCcccccCCcc--ccchhhh
Q 032336           79 VAKLVKLIDKSNGY--IFAGMDASAV-EFSK---IAVRNVDWDYYRYPSF--HLFQSLA  129 (143)
Q Consensus        79 ~~~~l~~l~~~~~~--~lSgGe~qrv-~ia~---al~~~p~~llld~~~~--~~~~~~~  129 (143)
                             -.....+  .+|+||++++ ++++   |++.+|+++++|   |  |+-..+.
T Consensus        74 -------~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilD---E~g~~~~~~~  122 (189)
T 2i3b_A           74 -------ECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVID---EIGKMELFSQ  122 (189)
T ss_dssp             -------CEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEEC---CCSTTTTTCS
T ss_pred             -------ccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEe---CCCccccccH
Confidence                   0000111  1467888777 3344   578999999999   6  6644443

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.51  E-value=3.8e-16  Score=114.81  Aligned_cols=104  Identities=17%  Similarity=0.142  Sum_probs=64.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc------------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------------   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------------   69 (143)
                      ++.+||+||||||||||+++|+|++    |.+.++              ..++.+++++|+. ++...            
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~--------------~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~   85 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMELL----GQNEVE--------------QRQRKVVILSQDR-FYKVLTAEQKAKALKGQ   85 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC--------------GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh----chhccc--------------ccCCceEEEeCCc-CccccCHhHhhhhhccC
Confidence            4679999999999999999999976    443221              1234466666663 22100            


Q ss_pred             -cCC---hhhHHHHHHHHHHhhh-hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhh
Q 032336           70 -TLD---IQDKESVAKLVKLIDK-SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSL  128 (143)
Q Consensus        70 -~~~---~~~~~~~~~~l~~l~~-~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~  128 (143)
                       .+.   ..+.+.+.+.++.+.- ....  .+|+|++||+.+ ++++.+|+++++|   +|+...+
T Consensus        86 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilD---g~~~~~~  147 (245)
T 2jeo_A           86 YNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFE---GILVFYS  147 (245)
T ss_dssp             CCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEE---CTTTTTS
T ss_pred             CCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEe---Ccccccc
Confidence             000   1123344555554421 1222  268999999987 5888899999999   6654433

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.51  E-value=3.6e-16  Score=121.15  Aligned_cols=115  Identities=10%  Similarity=0.081  Sum_probs=66.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCC----ceEEEcceeehhhhccccHHHHHhhcchhccccccccc--------c
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG----SNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--------S   69 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~----G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--------~   69 (143)
                      +..++|+||||||||||+++|+|+++|++    |++++++.....+. ......+ ..|++++|++.++..        .
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~  247 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYIDYAVRHSHKIAFI  247 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHHHHHhccCCEEEE
Confidence            46789999999999999999999999999    88876421000111 1222233 458888887654311        0


Q ss_pred             cCChhhH------------HHHHHHHHH--hhh--hC----CC-----cCCchhHHHHHHHHHH---hh--cCCccccc
Q 032336           70 TLDIQDK------------ESVAKLVKL--IDK--SN----GY-----IFAGMDASAVEFSKIA---VR--NVDWDYYR  118 (143)
Q Consensus        70 ~~~~~~~------------~~~~~~l~~--l~~--~~----~~-----~lSgGe~qrv~ia~al---~~--~p~~llld  118 (143)
                      .....+.            ..+..++..  .++  .+    .+     -+|+|++||.++++++   ..  ++.++++|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild  326 (365)
T 1lw7_A          248 DTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE  326 (365)
T ss_dssp             SSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE
T ss_pred             eCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC
Confidence            0111010            011111111  111  01    11     1478999999999999   66  89999999

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.50  E-value=9.8e-15  Score=115.83  Aligned_cols=104  Identities=7%  Similarity=-0.055  Sum_probs=65.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccc-----cHHHHHhhcchhccc-ccccccccCChhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNS-----ACRKLTKELCDVIED-YSLVNFSTLDIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-----~~~~~~~~ig~V~Q~-~~l~~~~~~~~~~   75 (143)
                      +..++|+||||||||||+++|+|+.+|+.|.|.+.|... .++...     ....+++.++|++|+ ..++...+.. + 
T Consensus       157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~-~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~-~-  233 (438)
T 2dpy_A          157 GQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERG-REVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGA-A-  233 (438)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH-HHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHH-H-
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceec-HHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHH-H-
Confidence            357899999999999999999999999999999998510 011111     123467789999995 3333222111 1 


Q ss_pred             HHHHHHHHHHhhhhCC---------CcCCchhHHHHHHHHHHhhcCCc
Q 032336           76 KESVAKLVKLIDKSNG---------YIFAGMDASAVEFSKIAVRNVDW  114 (143)
Q Consensus        76 ~~~~~~~l~~l~~~~~---------~~lSgGe~qrv~ia~al~~~p~~  114 (143)
                        .+....+.+.....         .-+|+|| |||++|   +.+|++
T Consensus       234 --~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~  275 (438)
T 2dpy_A          234 --YATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA  275 (438)
T ss_dssp             --HHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC
T ss_pred             --HHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc
Confidence              11111121111111         1148898 999999   788876

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.50  E-value=9.6e-17  Score=126.65  Aligned_cols=114  Identities=15%  Similarity=0.072  Sum_probs=68.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcch---------hcccccccccccC--
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCD---------VIEDYSLVNFSTL--   71 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~---------V~Q~~~l~~~~~~--   71 (143)
                      ..++|+|||||||||||++|+|+++|++|+|.+.+..+...........++..+++         +.|++.++.....  
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd  247 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRD  247 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCC
Confidence            46899999999999999999999999999999877422100000000011223443         5588775311110  


Q ss_pred             ---------------------ChhhHHHHHHHHHHhhhhC---CCcCCchhHHHHHHHHHHhhcCCccccc
Q 032336           72 ---------------------DIQDKESVAKLVKLIDKSN---GYIFAGMDASAVEFSKIAVRNVDWDYYR  118 (143)
Q Consensus        72 ---------------------~~~~~~~~~~~l~~l~~~~---~~~lSgGe~qrv~ia~al~~~p~~llld  118 (143)
                                           ...+...+.+.|..+++..   ...+|||++||  |||+++.+|++....
T Consensus       248 ~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSgg~~QR--LaraL~~~p~~~~~~  316 (418)
T 1p9r_A          248 LETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQR--LVRTLCPDCKEPYEA  316 (418)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEE--EEEEECTTTCEEEEC
T ss_pred             HHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--hhhhhcCCCCccCCC
Confidence                                 0011111222333344321   11279999999  999999999987643

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.50  E-value=2.9e-15  Score=116.02  Aligned_cols=102  Identities=10%  Similarity=0.120  Sum_probs=63.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc-cCCceEEEc-ceeehhhhccccHHHHHhhcchhcccccccccc--------cCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS-LIGSNICCS-NVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS--------TLD   72 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~-~~~G~i~~~-g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~--------~~~   72 (143)
                      ..++|+||||||||||+++|+|... |..|+|.+. |.    ...    ...+..+++++|+..++...        ...
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~----g~~----tt~~~~i~~v~q~~~l~dtpgv~e~~l~~l~  287 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGL----GQH----TTTAARLYHFPHGGDVIDSPGVREFGLWHLE  287 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------------------CCCEEEECTTSCEEEECHHHHTCCCCCCC
T ss_pred             CEEEEECCCCccHHHHHHHHhccccccccCCccccCCC----Ccc----ceEEEEEEEECCCCEecCcccHHHhhhcCCC
Confidence            4689999999999999999999999 999999876 53    111    12335689999987654211        111


Q ss_pred             hh-hHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCC
Q 032336           73 IQ-DKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVD  113 (143)
Q Consensus        73 ~~-~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~  113 (143)
                      .+ ....+.++++.+++.   +..+  +| |++||+++|++++...+
T Consensus       288 ~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~~~R  333 (358)
T 2rcn_A          288 PEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIAETR  333 (358)
T ss_dssp             HHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSCHHH
T ss_pred             HHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCCHHH
Confidence            21 123345556666542   2222  58 99999999999875444

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.47  E-value=1.7e-14  Score=108.41  Aligned_cols=114  Identities=8%  Similarity=-0.052  Sum_probs=67.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCc-eEEEcceeehhhhccccHHHHHhhcchhcccccccc--ccc---CChhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS-NICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN--FST---LDIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~--~~~---~~~~~   75 (143)
                      +..++|+||||||||||++.|++...|.+| .|.+.+.    .   .+..++++++..+++...+..  ...   ...++
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~----e---~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~  107 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML----E---ESVEETAEDLIGLHNRVRLRQSDSLKREIIENGK  107 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES----S---SCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC----c---CCHHHHHHHHHHHHcCCChhhccccccCCCCHHH
Confidence            357899999999999999999999999877 7755442    1   123345555555554433211  010   01111


Q ss_pred             -HHHHHHHHHHhh--hhCC-CcCCchh-HHHHHHHHHHhhcCCcccccCCccccch
Q 032336           76 -KESVAKLVKLID--KSNG-YIFAGMD-ASAVEFSKIAVRNVDWDYYRYPSFHLFQ  126 (143)
Q Consensus        76 -~~~~~~~l~~l~--~~~~-~~lSgGe-~qrv~ia~al~~~p~~llld~~~~~~~~  126 (143)
                       .+.+.++++...  +.+. ...+.++ +|++. |++++.+|+++++|   ||++.
T Consensus       108 ~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilD---ept~~  159 (296)
T 1cr0_A          108 FDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILD---HISIV  159 (296)
T ss_dssp             HHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEE---EEC--
T ss_pred             HHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEc---Ccccc
Confidence             112222222112  2222 2246677 67777 99999999999999   77773

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.45  E-value=1.1e-15  Score=115.75  Aligned_cols=113  Identities=15%  Similarity=0.151  Sum_probs=53.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC-cccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc----cCCh---
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF-LSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS----TLDI---   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~----~~~~---   73 (143)
                      -+.++|+||||||||||+++|.|. ..|++| +.++|..    ... . . ..+.+++++|...+....    +...   
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~----~~~-t-~-~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~   89 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEK----IER-T-V-QIEASTVEIEERGVKLRLTVVDTPGYGDA   89 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC--------------------------------CEEEEC---CCEEEEEEEEC-----
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcc----cCC-c-c-eEeeEEEEecCCCcccCcchhhhhhhhhh
Confidence            367899999999999999999998 888999 8777742    211 1 1 124578888875532111    1100   


Q ss_pred             -hhHHHHHHHHHHh-hhhCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccch-hhh
Q 032336           74 -QDKESVAKLVKLI-DKSNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQ-SLA  129 (143)
Q Consensus        74 -~~~~~~~~~l~~l-~~~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~-~~~  129 (143)
                       ...+....+.+.+ ...+.+.  +|||+|||+.+|||++    ++++|   ||+.. ++.
T Consensus        90 ~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ld---ePt~~~Ld~  143 (301)
T 2qnr_A           90 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFI---SPFGHGLKP  143 (301)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEE---CSSSSSCCH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeee---cCcccCCCH
Confidence             0001111111111 1112222  5899999999999886    88999   66653 444

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.43  E-value=3.4e-14  Score=99.97  Aligned_cols=105  Identities=10%  Similarity=-0.027  Sum_probs=61.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      +..++|+||||||||||+++|++.  ++.|.|.+++.    ++....  ..+..++|++|....  .......-......
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d----~~~~~~--~~~~~~~~~~~~~~~--~~~v~~~l~~~~~~   78 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSD----DLWGYI--KHGRIDPWLPQSHQQ--NRMIMQIAADVAGR   78 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTT----HHHHTC--CSSCCCTTSSSHHHH--HHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEccc----chhhhh--hcccccCCccchhhh--hHHHHHHHHHHHHH
Confidence            357899999999999999999997  78899999874    221110  001235666664320  00000000000000


Q ss_pred             H-----------------HHHhhhhCC--CcCCchhHHHHHHHHHHhhcCCccc
Q 032336           82 L-----------------VKLIDKSNG--YIFAGMDASAVEFSKIAVRNVDWDY  116 (143)
Q Consensus        82 ~-----------------l~~l~~~~~--~~lSgGe~qrv~ia~al~~~p~~ll  116 (143)
                      .                 ++.+.....  ..+|+|++|++.++|++..+|++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~ll  132 (191)
T 1zp6_A           79 YAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLS  132 (191)
T ss_dssp             HHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCC
T ss_pred             HhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccC
Confidence            0                 000000011  2368999999999999999998763

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.41  E-value=7.6e-15  Score=111.27  Aligned_cols=99  Identities=16%  Similarity=0.135  Sum_probs=61.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEE---cceeehhhhccccHHHHH-hhcchhccccccc-----cccc--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC---SNVFYLQAVHNSACRKLT-KELCDVIEDYSLV-----NFST--   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~-----~~~~--   70 (143)
                      +..++|+||||||||||+++|+ +.+|++|+|.+   +|+...    ... ...+ +.++||+|.|.+.     +..+  
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t----~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~e  238 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTT----TGV-RLIPFGKGSFVGDTPGFSKVEATMFVKPR  238 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CC----CCE-EEEEETTTEEEESSCCCSSCCGGGTSCGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCce----eeE-EEEEcCCCcEEEECcCcCcCcccccCCHH
Confidence            3568999999999999999999 99999999999   775322    111 0111 2589999887431     1110  


Q ss_pred             -----C---------------ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHH
Q 032336           71 -----L---------------DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSK  106 (143)
Q Consensus        71 -----~---------------~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~  106 (143)
                           +               ..+....+.++++.+++.    +.+.  +||.+|++++|||
T Consensus       239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence                 0               112234577778777663    2232  6888888888886

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.40  E-value=1.2e-13  Score=99.30  Aligned_cols=101  Identities=17%  Similarity=0.107  Sum_probs=59.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-------CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-------IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-------~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~   74 (143)
                      +..++|+||||||||||+++|+|...+       ..+.+++++.    ..  ..    .+.+++++|...+++.      
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~----~~--~~----~~~i~~~~~~~~~~~~------   88 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE----NT--FR----PERIREIAQNRGLDPD------   88 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS----SC--CC----HHHHHHHHHHTTSCHH------
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC----CC--CC----HHHHHHHHHHcCCCHH------
Confidence            467999999999999999999995544       3446777663    11  11    1235666666544211      


Q ss_pred             hHHHHHHHHHHhhhhCCCcCCch-hHHHHHHHHHHhh-------cCCcccccCCccccchhhh
Q 032336           75 DKESVAKLVKLIDKSNGYIFAGM-DASAVEFSKIAVR-------NVDWDYYRYPSFHLFQSLA  129 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~~~~~lSgG-e~qrv~ia~al~~-------~p~~llld~~~~~~~~~~~  129 (143)
                            .+.+.+.+.  ...+.+ +++.+..+++++.       +|+++++|   ||++.++.
T Consensus        89 ------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilD---e~~~~l~~  140 (231)
T 4a74_A           89 ------EVLKHIYVA--RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD---SLTSHFRS  140 (231)
T ss_dssp             ------HHHHTEEEE--ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEE---TSSHHHHH
T ss_pred             ------HHhhcEEEE--ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEEC---ChHHHhcc
Confidence                  111111111  111222 2333444555544       89999999   78877665

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.40  E-value=6.6e-15  Score=105.62  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=63.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc---CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKES   78 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~   78 (143)
                      ++.++|+||||||||||+++|+|+++|   ..|.|.++|...    .   ... ...++..... .. +    ...+...
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~----~---~~~-~~~~~~~~~~-~~-~----~~~~~~~   87 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL----D---NRL-LEPRGLLPRK-GA-P----ETFDFEG   87 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC----C---HHH-HGGGTCGGGT-TS-G----GGBCHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC----C---HHH-HHHhcccccC-CC-C----chhhHHH
Confidence            468999999999999999999999986   478888777421    1   111 1222221110 00 0    0011122


Q ss_pred             HHHHHHHhhhh---------CCCcCCchhHHHHHHH-HHHhhcCCccccc
Q 032336           79 VAKLVKLIDKS---------NGYIFAGMDASAVEFS-KIAVRNVDWDYYR  118 (143)
Q Consensus        79 ~~~~l~~l~~~---------~~~~lSgGe~qrv~ia-~al~~~p~~llld  118 (143)
                      ..+.+..+...         .....|+||+|+++++ ++++.++.++++|
T Consensus        88 ~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~d  137 (208)
T 3c8u_A           88 FQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFD  137 (208)
T ss_dssp             HHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBC
T ss_pred             HHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccC
Confidence            33334433211         1222488999999998 8899999988888

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.40  E-value=6.4e-14  Score=107.43  Aligned_cols=65  Identities=18%  Similarity=0.189  Sum_probs=47.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcc--hhccccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC--DVIEDYSLV   66 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig--~V~Q~~~l~   66 (143)
                      .+.++|+|||||||||++++|+|+++|++|+|.+.|.+....-.....+.+++.++  +++|...++
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~  195 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGAD  195 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCC
Confidence            36789999999999999999999999999999999863321101112233455555  777876654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.39  E-value=2.6e-13  Score=109.65  Aligned_cols=99  Identities=13%  Similarity=0.036  Sum_probs=63.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCce--EEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSN--ICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESV   79 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~--i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~   79 (143)
                      +..++|+||||||||||+++++|...+. |+  +++.++    +    +...+.....    ...      ...      
T Consensus       281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~e----e----~~~~l~~~~~----~~g------~~~------  335 (525)
T 1tf7_A          281 DSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYE----E----SRAQLLRNAY----SWG------MDF------  335 (525)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESS----S----CHHHHHHHHH----TTS------CCH------
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEe----C----CHHHHHHHHH----HcC------CCH------
Confidence            3578999999999999999999998875 54  455442    1    1112221110    000      111      


Q ss_pred             HHHHHHhh---hhCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           80 AKLVKLID---KSNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        80 ~~~l~~l~---~~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                      .++ ...+   +.+.++  +|+||+||+.+|++++.+|+++++| |   ++.++..
T Consensus       336 ~~~-~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p---~~~Ld~~  386 (525)
T 1tf7_A          336 EEM-ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-S---LSALARG  386 (525)
T ss_dssp             HHH-HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-C---HHHHTSS
T ss_pred             HHH-HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-C---hHHHHhh
Confidence            111 1222   223333  6999999999999999999999999 4   5566554

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.39  E-value=1.1e-13  Score=116.12  Aligned_cols=93  Identities=10%  Similarity=-0.095  Sum_probs=66.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc-cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS-LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      ..++|+||||||||||||+++|+.. +..|.+...               .+..+++++|   ++...+.  .+.     
T Consensus       577 ~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa---------------~~~~i~~v~~---i~~~~~~--~d~-----  631 (765)
T 1ewq_A          577 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA---------------EEAHLPLFDG---IYTRIGA--SDD-----  631 (765)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS---------------SEEEECCCSE---EEEECCC----------
T ss_pred             cEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh---------------hccceeeHHH---hhccCCH--HHH-----
Confidence            5689999999999999999999874 677765310               1234788876   3322222  110     


Q ss_pred             HHHHhhhhCCCcCCchhHHHHHHHHHH--hhcCCcccccCCccc---cchhhhhh
Q 032336           82 LVKLIDKSNGYIFAGMDASAVEFSKIA--VRNVDWDYYRYPSFH---LFQSLAEV  131 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe~qrv~ia~al--~~~p~~llld~~~~~---~~~~~~~~  131 (143)
                       +       ....|+++++++.+++++  +.+|+++|+|   ||   |+.+|...
T Consensus       632 -l-------~~g~S~~~~e~~~la~il~~a~~p~LlLLD---EpgrGTs~lD~~~  675 (765)
T 1ewq_A          632 -L-------AGGKSTFMVEMEEVALILKEATENSLVLLD---EVGRGTSSLDGVA  675 (765)
T ss_dssp             -----------CCSHHHHHHHHHHHHHHHCCTTEEEEEE---STTTTSCHHHHHH
T ss_pred             -H-------HhcccHHHHHHHHHHHHHHhccCCCEEEEE---CCCCCCCCcCHHH
Confidence             0       012478899999999999  9999999999   99   99998754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.38  E-value=2.5e-14  Score=115.63  Aligned_cols=58  Identities=12%  Similarity=0.087  Sum_probs=47.2

Q ss_pred             eeeEEEECCCCCcHHHHHHH--HhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNG--MSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS   64 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~--l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~   64 (143)
                      +..++|+||||||||||+++  ++|+++|++|.|+++|..     ........++.+||++|++.
T Consensus        39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~-----~~~~~~~~~~~~g~~~q~~~   98 (525)
T 1tf7_A           39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE-----TPQDIIKNARSFGWDLAKLV   98 (525)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS-----CHHHHHHHHGGGTCCHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC-----CHHHHHHHHHHcCCChHHhh
Confidence            35789999999999999999  789999999999999852     12233455677999999865

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.37  E-value=1.4e-13  Score=106.75  Aligned_cols=56  Identities=21%  Similarity=0.129  Sum_probs=41.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhc-ccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVI-EDY   63 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~-Q~~   63 (143)
                      +..++|+||||||||||+++|+|+++|++|.|.++|..   .+   .....++.+++++ |+.
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~---e~---~~~~~~~~v~~v~~q~~  231 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP---EL---FLPDHPNHVHLFYPSEA  231 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS---CC---CCTTCSSEEEEECC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc---cc---CccccCCEEEEeecCcc
Confidence            45789999999999999999999999999999998741   11   1112345578887 654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.37  E-value=6.6e-14  Score=105.99  Aligned_cols=60  Identities=17%  Similarity=0.023  Sum_probs=37.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEE---cceeehhhhccccHHHHHhhcchhcccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC---SNVFYLQAVHNSACRKLTKELCDVIEDYSL   65 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l   65 (143)
                      +..++|+||||||||||+++|+|+.+|++|+|.+   +|..+.    ........+.+++|+|.+.+
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t----~~~~~~~~~~~g~v~q~p~~  231 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTT----TTAQLLKFDFGGYVVDTPGF  231 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CC----CSCCEEECTTSCEEESSCSS
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCce----eeeEEEEcCCCCEEEECcCC
Confidence            3568999999999999999999999999999998   775322    11100011358999999864

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.36  E-value=3.4e-12  Score=97.93  Aligned_cols=38  Identities=11%  Similarity=-0.048  Sum_probs=32.9

Q ss_pred             CCchhHH------HHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           94 FAGMDAS------AVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        94 lSgGe~q------rv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      +||||||      |+++|++++.+|+++++|   ||++.||...+..
T Consensus       249 lS~G~~~~~~la~~l~~a~~l~~~p~~lllD---Ep~~~LD~~~~~~  292 (339)
T 3qkt_A          249 LSGGERIALGLAFRLAMSLYLAGEISLLILD---EPTPYLDEERRRK  292 (339)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTTTTCEEEEE---CCCTTCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEE---CCCCCCCHHHHHH
Confidence            7999999      567778888899999999   9999999877653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.36  E-value=1e-13  Score=107.35  Aligned_cols=82  Identities=18%  Similarity=0.099  Sum_probs=53.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccC-CceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLI-GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      ..++|+||||||||||+++|+|+++|+ +|.|...+.    +.. ..   .....++++|.......  ..-.       
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed----~~e-~~---~~~~~~~v~q~~~~~~~--~~~~-------  186 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED----PIE-FV---HESKKCLVNQREVHRDT--LGFS-------  186 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES----SCC-SC---CCCSSSEEEEEEBTTTB--SCHH-------
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC----cHH-hh---hhccccceeeeeecccc--CCHH-------
Confidence            468999999999999999999999987 566654331    111 10   11123445543221000  0000       


Q ss_pred             HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCcccc
Q 032336           82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHL  124 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~  124 (143)
                                          -+||+||.++|+++++|   ||+
T Consensus       187 --------------------~~La~aL~~~PdvillD---Ep~  206 (356)
T 3jvv_A          187 --------------------EALRSALREDPDIILVG---EMR  206 (356)
T ss_dssp             --------------------HHHHHHTTSCCSEEEES---CCC
T ss_pred             --------------------HHHHHHhhhCcCEEecC---CCC
Confidence                                08999999999999999   777

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.36  E-value=1.3e-13  Score=107.24  Aligned_cols=83  Identities=17%  Similarity=0.141  Sum_probs=60.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccC-CceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI-GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVA   80 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~   80 (143)
                      +..++|+||||||||||+++|+|+++|+ +|+|.+.+.    ++. +   ..+..+++|+|..                 
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~----~~e-~---~~~~~~~~v~Q~~-----------------  190 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED----PIE-Y---VFKHKKSIVNQRE-----------------  190 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES----SCC-S---CCCCSSSEEEEEE-----------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc----cHh-h---hhccCceEEEeee-----------------
Confidence            3568999999999999999999999998 899976653    221 1   1334578888741                 


Q ss_pred             HHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCcccc
Q 032336           81 KLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHL  124 (143)
Q Consensus        81 ~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~  124 (143)
                           ++... ..+      +.+++++|.++|+++++|   ||+
T Consensus       191 -----~g~~~-~~~------~~~l~~~L~~~pd~illd---E~~  219 (372)
T 2ewv_A          191 -----VGEDT-KSF------ADALRAALREDPDVIFVG---EMR  219 (372)
T ss_dssp             -----BTTTB-SCS------HHHHHHHTTSCCSEEEES---CCC
T ss_pred             -----cCCCH-HHH------HHHHHHHhhhCcCEEEEC---CCC
Confidence                 11100 111      468999999999999999   776

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.36  E-value=3.6e-14  Score=104.11  Aligned_cols=35  Identities=34%  Similarity=0.670  Sum_probs=32.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHh---CCcccCCceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS---QFLSLIGSNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~---g~~~~~~G~i~~~g   37 (143)
                      ..++|+||||||||||+++|+   |+..|+.|+|.+++
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~   65 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLREN   65 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHH
Confidence            468999999999999999999   99999999998765

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.34  E-value=6.5e-13  Score=102.52  Aligned_cols=37  Identities=14%  Similarity=-0.085  Sum_probs=34.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      +..++|+||||||||||+++|+|+.+|+.|.|.+.|+
T Consensus        71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~  107 (347)
T 2obl_A           71 GQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE  107 (347)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence            4578999999999999999999999999999988874

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.32  E-value=4.3e-13  Score=103.55  Aligned_cols=103  Identities=15%  Similarity=0.059  Sum_probs=71.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc--ccCC----ce-EEEcceeehhhhccccHHHHHhhcchhcccccccccccCChh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL--SLIG----SN-ICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~~~----G~-i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~   74 (143)
                      +..++|+||||||||||++.+++..  +|+.    |. |++++.    +.  .    .++++++++|.+.++..      
T Consensus       131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e----~~--~----~~~~i~~i~q~~~~~~~------  194 (349)
T 1pzn_A          131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE----NT--F----RPERIREIAQNRGLDPD------  194 (349)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS----SC--C----CHHHHHHHHHTTTCCHH------
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC----CC--C----CHHHHHHHHHHcCCCHH------
Confidence            3578999999999999999999988  6666    67 788774    21  1    13457888887654311      


Q ss_pred             hHHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHh-------hcCCcccccCCccccchhhhh
Q 032336           75 DKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV-------RNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~-------~~p~~llld~~~~~~~~~~~~  130 (143)
                            .+++.+.+.. ...+.++.|++.++++++       .+|+++++|   ||++.++..
T Consensus       195 ------~v~~ni~~~~-~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlD---s~ta~ld~~  247 (349)
T 1pzn_A          195 ------EVLKHIYVAR-AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD---SLTSHFRSE  247 (349)
T ss_dssp             ------HHGGGEEEEE-CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEE---TSSTTHHHH
T ss_pred             ------HHhhCEEEEe-cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEe---CchHhhhhh
Confidence                  1111111111 112456788888888888       579999999   888888764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.32  E-value=1.4e-12  Score=93.73  Aligned_cols=111  Identities=12%  Similarity=-0.040  Sum_probs=65.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHHH
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKL   82 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~~   82 (143)
                      ..++|+||||||||||++.|++...+.+|.|.+.+.    +............+++.+|.............. ..    
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----   94 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT----EESRDSIIRQAKQFNWDFEEYIEKKLIIIDALM-KE----   94 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES----SSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC-------
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc----ccCHHHHHHHHHHhcchHHHHhhCCEEEEeccc-cc----
Confidence            568999999999999999999988888888877653    111111222223456655543211000000000 00    


Q ss_pred             HHHhhhhCCCcCCchhHHHHHHHHHHhhcCC--cccccCCccccchh
Q 032336           83 VKLIDKSNGYIFAGMDASAVEFSKIAVRNVD--WDYYRYPSFHLFQS  127 (143)
Q Consensus        83 l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~--~llld~~~~~~~~~  127 (143)
                      ... ...... .+.++.++...+.+...+|+  ++++|   ||++.+
T Consensus        95 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~llilD---e~~~~~  136 (235)
T 2w0m_A           95 KED-QWSLVN-LTPEELVNKVIEAKQKLGYGKARLVID---SVSALF  136 (235)
T ss_dssp             --C-TTBCSS-CCHHHHHHHHHHHHHHHCSSCEEEEEE---TGGGGS
T ss_pred             cCc-eeeecC-CCHHHHHHHHHHHHHhhCCCceEEEEE---CchHhh
Confidence            000 000111 26777777777777778999  99999   888665

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.31  E-value=4.5e-13  Score=92.74  Aligned_cols=55  Identities=22%  Similarity=0.233  Sum_probs=42.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV   66 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~   66 (143)
                      +..++|+||||||||||+|+|+|++ |++|+|.++|..+.   ....   .+   .+++|++.++
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~---~~~~---~~---~~~~q~~~l~   87 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLV---EEYN---IA---GKMIYHFDLY   87 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCE---EEEE---ET---TEEEEEEECT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeee---eecc---CC---Ccceeccccc
Confidence            3578999999999999999999999 99999999885321   1111   11   2789988776

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.31  E-value=3.7e-14  Score=101.23  Aligned_cols=55  Identities=16%  Similarity=0.106  Sum_probs=37.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc-------------cCCceEEEcceeehhhhccccHHHHHhhcchhcccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS-------------LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL   65 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l   65 (143)
                      +..++|+||||||||||+++|+|+++             |..|+  ++|.    ++...+...+++.+   .|+..+
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~----~~~~~~~~~~~~~i---~~~~~l   71 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGK----DYYFVTREMMQRDI---AAGDFI   71 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTT----TBEECCHHHHHHHH---HHTCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCc----eEEEccHHHHHHHH---HcCCCE
Confidence            35789999999999999999999875             66776  3554    33334445555443   454443

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.30  E-value=1.2e-13  Score=103.30  Aligned_cols=99  Identities=22%  Similarity=0.298  Sum_probs=63.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc-cccc----ccc---CC-h
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY-SLVN----FST---LD-I   73 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~-~l~~----~~~---~~-~   73 (143)
                      .+++|+||||||||||+++|++...+  +.|.++|.    ++......+..+.++++||.. ...+    +..   .. .
T Consensus        45 ~GvlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~----~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~  118 (274)
T 2x8a_A           45 AGVLLAGPPGCGKTLLAKAVANESGL--NFISVKGP----ELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPR  118 (274)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHHTTC--EEEEEETT----TTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcH----HHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcc
Confidence            35899999999999999999998866  78888885    333333344556788888874 1111    000   00 0


Q ss_pred             -hhH------HHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcc
Q 032336           74 -QDK------ESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWD  115 (143)
Q Consensus        74 -~~~------~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~l  115 (143)
                       ...      ....+.+..        +||||+|++.+++|++..|++|
T Consensus       119 r~~~~~~~~~~~~~~~l~~--------Lsgg~~~~~~i~ia~tn~p~~L  159 (274)
T 2x8a_A          119 RSDRETGASVRVVNQLLTE--------MDGLEARQQVFIMAATNRPDII  159 (274)
T ss_dssp             --------CTTHHHHHHHH--------HHTCCSTTCEEEEEEESCGGGS
T ss_pred             cCCCcchHHHHHHHHHHHh--------hhcccccCCEEEEeecCChhhC
Confidence             000      011122222        4699999999999999999865

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.29  E-value=5.4e-13  Score=102.53  Aligned_cols=66  Identities=15%  Similarity=0.174  Sum_probs=49.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN   67 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~   67 (143)
                      ++.++|+||||||||||+++|+|++.|++|+|.+.+.+.............++++++++|++.++.
T Consensus        55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~  120 (337)
T 2qm8_A           55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI  120 (337)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence            467999999999999999999999999999999988643211000011224567999999987663

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.28  E-value=9.7e-14  Score=105.79  Aligned_cols=112  Identities=13%  Similarity=0.083  Sum_probs=67.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc--------ccCCceEEEcceeehhhhccc------------cHHHHHhhcchh---
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL--------SLIGSNICCSNVFYLQAVHNS------------ACRKLTKELCDV---   59 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~--------~~~~G~i~~~g~~~~~~~~~~------------~~~~~~~~ig~V---   59 (143)
                      ..++|+|+||||||||++.|.|+.        .|+.|+|.++|..+.. ....            ....+++.++++   
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~-~~~~~~el~~gCicc~~~~~~~~~l~~l~~~   83 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGD-RATQIKTLTNGCICCSRSNELEDALLDLLDN   83 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECT-TSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhC-CCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence            568999999999999999999987        7899999999964421 1000            012455668877   


Q ss_pred             ccccccccc------ccCC-hhhH-HHH---HHHHHH---------hhhh---CCC-cCCchhHHHHHHHHHHhhcCCcc
Q 032336           60 IEDYSLVNF------STLD-IQDK-ESV---AKLVKL---------IDKS---NGY-IFAGMDASAVEFSKIAVRNVDWD  115 (143)
Q Consensus        60 ~Q~~~l~~~------~~~~-~~~~-~~~---~~~l~~---------l~~~---~~~-~lSgGe~qrv~ia~al~~~p~~l  115 (143)
                      +|+..+++.      .... .... ...   .+.-..         ++..   ... .+|+||+||+..+++++.+|+++
T Consensus        84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~  163 (318)
T 1nij_A           84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA  163 (318)
T ss_dssp             HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC
T ss_pred             HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC
Confidence            676553211      1111 1110 010   010011         1110   111 25899999998888888888866

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.27  E-value=5.2e-12  Score=95.95  Aligned_cols=89  Identities=20%  Similarity=0.240  Sum_probs=63.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      ...++|+|||||||||+++.|++.+.+.+|+|.+.+.    +....         +.                 .+....
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~----D~~r~---------~a-----------------~eqL~~  153 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA----DTFRA---------AA-----------------IEQLKI  153 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE----CTTCH---------HH-----------------HHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc----ccccH---------HH-----------------HHHHHH
Confidence            3578999999999999999999999999999988764    21110         00                 011223


Q ss_pred             HHHHhhhhCCCcCCchhHHHH---HHHHHHhhcCCcccccCC
Q 032336           82 LVKLIDKSNGYIFAGMDASAV---EFSKIAVRNVDWDYYRYP  120 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe~qrv---~ia~al~~~p~~llld~~  120 (143)
                      +++.+++......++++.+++   ++++++..+++++++|.|
T Consensus       154 ~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtp  195 (306)
T 1vma_A          154 WGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTA  195 (306)
T ss_dssp             HHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred             HHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            344444432223478899998   889999999999999954

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.27  E-value=1.5e-12  Score=104.41  Aligned_cols=65  Identities=14%  Similarity=0.129  Sum_probs=46.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHH--HHhhcchhccccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRK--LTKELCDVIEDYSLV   66 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~--~~~~ig~V~Q~~~l~   66 (143)
                      +..++|+||||||||||+++|+|++++++|+|.+.+.+..........+.  .++.++|++|+..++
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~  359 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD  359 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence            46789999999999999999999999999999997642211000001122  356799999987643

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.27  E-value=2.4e-13  Score=98.74  Aligned_cols=57  Identities=11%  Similarity=0.054  Sum_probs=43.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc--CCceEEEcceeehhhhccccHHHHHhhcchhccccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL--IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV   66 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~   66 (143)
                      +..++|+||||||||||+++|+|+++|  ..|.|.+.+.    +...    ..+..++|+||++.+|
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr----~~~~----~e~~gi~y~fq~~~~f   74 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTR----QPRP----GEVHGEHYFFVNHDEF   74 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECS----CCCT----TCCBTTTBEECCHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCC----CCCc----ccccCceEEECCHHHH
Confidence            357899999999999999999999986  6888887664    1111    1235689999987654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.23  E-value=4.7e-13  Score=105.61  Aligned_cols=107  Identities=13%  Similarity=0.086  Sum_probs=54.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc----cCChh----
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS----TLDIQ----   74 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~----~~~~~----   74 (143)
                      +.++|+||||||||||+++|+|...+..|.   ++..    .... .......+++++|+..++...    +..-.    
T Consensus        32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~----~~~~-~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~  103 (418)
T 2qag_C           32 FTLMVVGESGLGKSTLINSLFLTDLYSPEY---PGPS----HRIK-KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD  103 (418)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC----------CCEEEEEECC------CEEEEEEECC-------
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCCCCCCCC---CCcc----cCCc-cceeeeeEEEEEecCCcccceeeeechhhhhhcc
Confidence            568999999999999999999998765551   2210    0000 000123478888876643211    11100    


Q ss_pred             hHHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCC---cccccCCcccc
Q 032336           75 DKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVD---WDYYRYPSFHL  124 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~---~llld~~~~~~  124 (143)
                      .......+.+.++.    .++.+.+||++|||+++.+|+   ++++|   ||+
T Consensus       104 ~~~~~~~i~~~i~~----~~~~~l~qr~~IaRal~~d~~~~vlL~ld---ePt  149 (418)
T 2qag_C          104 NSNCWQPVIDYIDS----KFEDYLNAESRVNRRQMPDNRVQCCLYFI---APS  149 (418)
T ss_dssp             ----CHHHHHHHHH----HHHHHTTTSCC-CCCCCCCC-CCEEEEEC---CC-
T ss_pred             chhhHHHHHHHHHH----HHHHHHHHHHHHHHHhccCCCeeEEEEEe---cCc
Confidence            00011112221110    112456789999999999999   89999   666

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.22  E-value=2.4e-12  Score=90.71  Aligned_cols=37  Identities=22%  Similarity=0.236  Sum_probs=32.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCccc-----------CCceEEEccee
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSL-----------IGSNICCSNVF   39 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~-----------~~G~i~~~g~~   39 (143)
                      +.++|+|+||||||||++.++|...+           ..|+|.++|..
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~   77 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT   77 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence            67999999999999999999998765           57888888853

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.20  E-value=5.7e-13  Score=100.52  Aligned_cols=118  Identities=12%  Similarity=0.011  Sum_probs=67.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccC-----CceE-EEcceeehhhhccccHHHHHhhcchhccccccccc-ccCChh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI-----GSNI-CCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-STLDIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~-----~G~i-~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-~~~~~~   74 (143)
                      ++.++|.||+|||||||++.|.+++.+.     ...+ ..++.       -.+. ..+..+.+-..+..++.. ......
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f-------~~~~-~~~~~l~~~~~~~~l~~~~g~p~a~  102 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF-------YLTH-EDQLKLNEQFKNNKLLQGRGLPGTH  102 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG-------BCCH-HHHHHHHHHTTTCGGGSSSCSTTSB
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc-------cCCh-HHHHHHhccccccchhhhccCcchh
Confidence            4679999999999999999999999764     1223 32321       0111 122233321111111111 112223


Q ss_pred             hHHHHHHHHHHhhhh-----------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           75 DKESVAKLVKLIDKS-----------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        75 ~~~~~~~~l~~l~~~-----------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                      +.+.+.+.++.+...           ..+  .+||||+||+.+|++.+.+|+++++|   ++++.++..
T Consensus       103 d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlE---G~~~~ld~~  168 (290)
T 1odf_A          103 DMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILE---GWFLGFNPI  168 (290)
T ss_dssp             CHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEE---ESSTTCCCC
T ss_pred             HHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEe---CccccCCcc
Confidence            344555666655321           111  25899999998873333389999999   777766653

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.19  E-value=1.9e-13  Score=99.83  Aligned_cols=58  Identities=21%  Similarity=0.164  Sum_probs=36.1

Q ss_pred             EEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcc----ccHHHHHhhcchhccc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHN----SACRKLTKELCDVIED   62 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~----~~~~~~~~~ig~V~Q~   62 (143)
                      ++|+|||||||||||++|+|++.|++|+|.++|..+......    .....++..++|++|+
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            578999999999999999999999999999998643110000    0001124568899975

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.19  E-value=4.3e-12  Score=109.40  Aligned_cols=90  Identities=14%  Similarity=0.122  Sum_probs=57.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcc-hhcccccccc-----cccCChhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC-DVIEDYSLVN-----FSTLDIQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig-~V~Q~~~l~~-----~~~~~~~~   75 (143)
                      +..++|+||||||||||||++ |++.+                       + .++| ||||+..-+.     +..+...+
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~-----------------------~-aqiG~~Vpq~~~~l~v~d~I~~rig~~d  843 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLLAV-----------------------M-AQMGCYVPAEVCRLTPIDRVFTRLGASD  843 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHHHH-----------------------H-HTTTCCEESSEEEECCCSBEEEECC---
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHHHH-----------------------H-hheeEEeccCcCCCCHHHHHHHHcCCHH
Confidence            357899999999999999999 88753                       1 2355 8888753110     01111111


Q ss_pred             HHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336           76 KESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE  130 (143)
Q Consensus        76 ~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~  130 (143)
                        .+..        ...-+++ +.+++++|++++.+|+++|+|   ||++.++..
T Consensus       844 --~~~~--------~~stf~~-em~~~a~al~la~~~sLlLLD---Ep~~Gtd~~  884 (1022)
T 2o8b_B          844 --RIMS--------GESTFFV-ELSETASILMHATAHSLVLVD---ELGRGTATF  884 (1022)
T ss_dssp             ----------------CHHHH-HHHHHHHHHHHCCTTCEEEEE---CTTTTSCHH
T ss_pred             --HHhh--------chhhhHH-HHHHHHHHHHhCCCCcEEEEE---CCCCCCChH
Confidence              0000        0011233 555699999999999999999   998777644

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.19  E-value=1.7e-12  Score=92.03  Aligned_cols=57  Identities=16%  Similarity=0.093  Sum_probs=39.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV   66 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~   66 (143)
                      +..++|+||||||||||+++|+|+++    .+.+.+....    .......+..++|+||++..+
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   63 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTT----RPKRPGDQEGVDYFFIDETRF   63 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEEC----SCCCTTCCBTTTBEECCHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceecc----CCCchhHhcCceEEeccHHHH
Confidence            45789999999999999999999863    5666664322    111112245688999887654

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.19  E-value=5.5e-13  Score=99.36  Aligned_cols=97  Identities=16%  Similarity=0.201  Sum_probs=61.7

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc---------C--
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST---------L--   71 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~---------~--   71 (143)
                      ++.|+||||||||||+++|++...  .|.|.+++.    ++........++.++++||... ..+...         .  
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~  148 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS----DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR  148 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH----HHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC-
T ss_pred             eEEEECCCcChHHHHHHHHHHHcC--CCEEEecHH----HHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhccc
Confidence            589999999999999999999875  788888774    2222212233455777777642 111000         0  


Q ss_pred             -------ChhhHHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCc
Q 032336           72 -------DIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDW  114 (143)
Q Consensus        72 -------~~~~~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~  114 (143)
                             ..+....+.+++..        +||||+|++.+++|++..|++
T Consensus       149 ~~~~~~~~~~~~~~~~~ll~~--------lsgg~~~~~~i~~a~t~~p~~  190 (278)
T 1iy2_A          149 GSGVGGGNDEREQTLNQLLVE--------MDGFEKDTAIVVMAATNRPDI  190 (278)
T ss_dssp             -------CHHHHHHHHHHHHH--------HTTCCTTCCEEEEEEESCTTS
T ss_pred             ccccCCcchHHHHHHHHHHHH--------HhCCCCCCCEEEEEecCCchh
Confidence                   01112223333333        368899999999999999876

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.18  E-value=1e-11  Score=94.13  Aligned_cols=56  Identities=14%  Similarity=0.119  Sum_probs=43.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc--cCCceEEE---cceeehhhhccccHHHHHhhcchhccccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS--LIGSNICC---SNVFYLQAVHNSACRKLTKELCDVIEDYSLV   66 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~--~~~G~i~~---~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~   66 (143)
                      ++.++|+||||||||||+++|+|++.  |++|+|.+   +|..    .   . ...++.++++ |...++
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~----~---~-~~~~~~~~~v-q~~~~~  140 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL----H---P-NQVLKERGLM-KKKGFP  140 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB----C---C-HHHHHHHTCT-TCTTSG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc----C---c-HHHHHhCCEe-ecCCCC
Confidence            36799999999999999999999998  99999998   7642    1   1 1234568888 766543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.18  E-value=1e-12  Score=96.46  Aligned_cols=97  Identities=16%  Similarity=0.196  Sum_probs=61.8

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-ccccc----------c--
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFS----------T--   70 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~----------~--   70 (143)
                      ++.|+||||||||||+++|++...  .|.+.+++.    ++........++.+++++|... ..+..          .  
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~  124 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS----DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR  124 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH----HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC--
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH----HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhccc
Confidence            589999999999999999999874  788888774    2222222233455677777642 11100          0  


Q ss_pred             ------CChhhHHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCc
Q 032336           71 ------LDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDW  114 (143)
Q Consensus        71 ------~~~~~~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~  114 (143)
                            ...+....+.+++..+        +|||+|++.+++|++..|++
T Consensus       125 ~~~~~~~~~~~~~~~~~ll~~l--------~g~~~~~~~i~~a~t~~p~~  166 (254)
T 1ixz_A          125 GSGVGGGNDEREQTLNQLLVEM--------DGFEKDTAIVVMAATNRPDI  166 (254)
T ss_dssp             -------CHHHHHHHHHHHHHH--------HTCCTTCCEEEEEEESCGGG
T ss_pred             CccccccchHHHHHHHHHHHHH--------hCCCCCCCEEEEEccCCchh
Confidence                  0111122334444443        48899999999999998875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.16  E-value=5.3e-12  Score=101.09  Aligned_cols=37  Identities=22%  Similarity=0.163  Sum_probs=34.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEccee
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVF   39 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~   39 (143)
                      ..++|+|||||||||||++|+|+++|++|+|.++|..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~   66 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT   66 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence            3689999999999999999999999999999999963

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.16  E-value=3.6e-11  Score=89.58  Aligned_cols=95  Identities=11%  Similarity=-0.022  Sum_probs=55.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccC----------CceE-EEcceeehhhhccccHHHHH---hhcchhccccccccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLI----------GSNI-CCSNVFYLQAVHNSACRKLT---KELCDVIEDYSLVNF   68 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~----------~G~i-~~~g~~~~~~~~~~~~~~~~---~~ig~V~Q~~~l~~~   68 (143)
                      ..++|+||||||||||++.+++.....          .|.+ ++...        .....+.   ..+++..        
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e--------~~~~~~~~r~~~~g~~~--------   94 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAE--------DPPTAIHHRLHALGAHL--------   94 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESS--------SCHHHHHHHHHHHHTTS--------
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECC--------CCHHHHHHHHHHHHhhc--------
Confidence            568999999999999999999865421          2222 22221        0111111   1111100        


Q ss_pred             ccCChhhHHHHHHHHHHhhhh---C--CCcCCchhHHHHHHHHHHhhcCCcccccCCccccc
Q 032336           69 STLDIQDKESVAKLVKLIDKS---N--GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLF  125 (143)
Q Consensus        69 ~~~~~~~~~~~~~~l~~l~~~---~--~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~  125 (143)
                         .   .....++++.+.+.   +  ...+|+|+.|+   +++++.+|+++++|   ||++
T Consensus        95 ---~---~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~---i~~l~~~~~livlD---e~~~  144 (279)
T 1nlf_A           95 ---S---AEERQAVADGLLIQPLIGSLPNIMAPEWFDG---LKRAAEGRRLMVLD---TLRR  144 (279)
T ss_dssp             ---C---HHHHHHHHHHEEECCCTTSCCCTTSHHHHHH---HHHHHTTCSEEEEE---CGGG
T ss_pred             ---C---hhhhhhccCceEEeecCCCCcccCCHHHHHH---HHHhcCCCCEEEEC---CHHH
Confidence               0   12234455665542   2  23368888776   46888899999999   6776

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.14  E-value=7e-12  Score=92.48  Aligned_cols=58  Identities=24%  Similarity=0.219  Sum_probs=47.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHh---CCcccCCceEE--------EcceeehhhhccccHHHHHhhcchhcccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS---QFLSLIGSNIC--------CSNVFYLQAVHNSACRKLTKELCDVIEDY   63 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~---g~~~~~~G~i~--------~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~   63 (143)
                      ..++|+|||||||||++++|+   |+..+++|.++        .+|..+.   .......+++.+++++|..
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~   96 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDIS---TEEALVPLAAHLDVRFVSQ   96 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSS---SSTTHHHHHHTCCEEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcc---cHHHHHHHHHcCCEEEecC
Confidence            579999999999999999999   99999999998        7775221   2334567888899999764

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.14  E-value=9.7e-12  Score=106.27  Aligned_cols=36  Identities=8%  Similarity=-0.192  Sum_probs=30.2

Q ss_pred             CCchhHHHHHHHHHH--hhcCCcccccCCccccchhhhhhh
Q 032336           94 FAGMDASAVEFSKIA--VRNVDWDYYRYPSFHLFQSLAEVQ  132 (143)
Q Consensus        94 lSgGe~qrv~ia~al--~~~p~~llld~~~~~~~~~~~~~~  132 (143)
                      .|+++++++.+|+++  +.+|+++|+|   ||++.++....
T Consensus       722 lStf~~e~~~~a~il~~a~~~sLlLLD---Ep~~GlD~~~~  759 (934)
T 3thx_A          722 VSTFMAEMLETASILRSATKDSLIIID---ELGRGTSTYDG  759 (934)
T ss_dssp             -CHHHHHHHHHHHHHHHCCTTCEEEEE---SCSCSSCHHHH
T ss_pred             HhhhHHHHHHHHHHHHhccCCcEEEEe---CCCCCCCHHHH
Confidence            477888888888888  8999999999   99999887543

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.13  E-value=2.7e-12  Score=109.43  Aligned_cols=36  Identities=6%  Similarity=-0.188  Sum_probs=31.0

Q ss_pred             CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           94 FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        94 lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                      +|+|++|++.++++ +.+|+++|+|   ||++.++.....
T Consensus       736 fs~em~~~~~il~~-a~~p~LlLLD---EP~~GlD~~~~~  771 (918)
T 3thx_B          736 FMEELTDTAEIIRK-ATSQSLVILD---ELGRGTSTHDGI  771 (918)
T ss_dssp             HHHHHHHHHHHHHH-CCTTCEEEEE---STTTTSCHHHHH
T ss_pred             hhHHHHHHHHHHHh-ccCCCEEEEe---CCCCCCCHHHHH
Confidence            46889999999988 8999999999   999999876443

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.10  E-value=5.7e-11  Score=83.86  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=30.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc-----c------CCceEEEccee
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS-----L------IGSNICCSNVF   39 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~-----~------~~G~i~~~g~~   39 (143)
                      +.++|+|+||||||||++.++|...     |      ..|+|.++|..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~   53 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT   53 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence            6799999999999999999999742     3      35788888853

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.08  E-value=7.6e-11  Score=89.99  Aligned_cols=108  Identities=16%  Similarity=0.124  Sum_probs=53.9

Q ss_pred             EEEECCCCCcHHHHHHHHhC-CcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-CChhhHHHHHHH
Q 032336            5 QVVIGPPGSGKTTYCNGMSQ-FLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-LDIQDKESVAKL   82 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-~~~~~~~~~~~~   82 (143)
                      +.|.||||+||||+++++++ ++.|+.|.+.++|..    ....  ...+..+++++|...+..... ....+...+.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ----FVTA--SNRKLELNVVSSPYHLEITPSDMGNNDRIVIQEL  112 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------------CCEECSSEEEECCC----CCHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee----eccc--ccccceeeeecccceEEecHhhcCCcchHHHHHH
Confidence            78999999999999999999 789999999998852    2111  112456888888765421110 011111124444


Q ss_pred             HHHhhhhCCC----cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336           83 VKLIDKSNGY----IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE  133 (143)
Q Consensus        83 l~~l~~~~~~----~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~  133 (143)
                      ++.+......    .+||           +..+|+++++|   ||++ ++...+.
T Consensus       113 i~~~~~~~~~~~~~~ls~-----------l~~~~~vlilD---E~~~-L~~~~~~  152 (354)
T 1sxj_E          113 LKEVAQMEQVDFQDSKDG-----------LAHRYKCVIIN---EANS-LTKDAQA  152 (354)
T ss_dssp             HHHHTTTTC-----------------------CCEEEEEE---CTTS-SCHHHHH
T ss_pred             HHHHHHhccccccccccc-----------cCCCCeEEEEe---Cccc-cCHHHHH
Confidence            4433211000    0123           67899999999   7777 6665554

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.04  E-value=2.3e-10  Score=82.70  Aligned_cols=57  Identities=12%  Similarity=0.062  Sum_probs=39.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC--Cccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ--FLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIE   61 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g--~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q   61 (143)
                      +..++|+||||||||||++.|++  ..+|     ..|.+++++..   .........+.+.+++.+|
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---~~~~~~~~~~~~~~g~~~~   87 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---TFRPERLLAVAERYGLSGS   87 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---CCCHHHHHHHHHHTTCCHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---CcCHHHHHHHHHHcCCCHH
Confidence            35689999999999999999999  5655     57788887741   0111223344556777664

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.03  E-value=1.2e-11  Score=94.07  Aligned_cols=61  Identities=18%  Similarity=0.157  Sum_probs=32.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE---cceeehhhhccccHHHHHhhcchhccccccccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC---SNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF   68 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~   68 (143)
                      ..++|+||||||||||+++|+|+.+|..|+|.+   .|+..    .... ...+..+++++|.+.+..+
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~t----t~~~-~~~~~~~g~v~dtpg~~~~  237 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHT----TRHV-ELIHTSGGLVADTPGFSSL  237 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-----------------------CCCC-CEEEETTEEEESSCSCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccc----ccHH-HHhhcCCEEEecCCCcccc
Confidence            468999999999999999999999999999998   66422    1111 0011127899999886543

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.03  E-value=1.5e-10  Score=81.29  Aligned_cols=35  Identities=23%  Similarity=0.422  Sum_probs=31.4

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      |+..++|+||||||||||+++|++   +.+|.+++++.
T Consensus         1 mg~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d   35 (189)
T 2bdt_A            1 MKKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGD   35 (189)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEccc
Confidence            778899999999999999999986   67899988873

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.01  E-value=6.4e-11  Score=100.99  Aligned_cols=111  Identities=7%  Similarity=-0.015  Sum_probs=70.9

Q ss_pred             HHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC----hhhHHHHHHHHHHhhhh---
Q 032336           17 TYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD----IQDKESVAKLVKLIDKS---   89 (143)
Q Consensus        17 TLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~----~~~~~~~~~~l~~l~~~---   89 (143)
                      |...|..+.++|..++|.++|+.+. ++...+   +...++++.+ ..+-......    ........+.|..+++.   
T Consensus       383 ~C~~C~g~rl~~~~~~V~i~G~~i~-~~~~~~---v~~~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~  457 (916)
T 3pih_A          383 TCSVCGGRRLNREALSVKINGLNIH-EFTELS---ISEELEFLKN-LNLTEREREIVGELLKEIEKRLEFLVDVGLEYLT  457 (916)
T ss_dssp             ECTTTCSCCBCTTGGGEEETTEEHH-HHHHSB---HHHHHHHHHS-CCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCB
T ss_pred             cchhcccccCChHhcCcEECCccHH-HhhhCC---HHHHHHHHHh-ccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccc
Confidence            4456777888999999999997543 222222   3344555332 2211000000    01122334556666653   


Q ss_pred             -CCCc--CCchhHHHHHHHHHHhhcCC--cccccCCccccchhhhhhhhhc
Q 032336           90 -NGYI--FAGMDASAVEFSKIAVRNVD--WDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        90 -~~~~--lSgGe~qrv~ia~al~~~p~--~llld~~~~~~~~~~~~~~~~~  135 (143)
                       ++.+  +||||+|||+|||||+++|+  +|+||   ||++.|+...++++
T Consensus       458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLD---EPT~gLD~~~~~~l  505 (916)
T 3pih_A          458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLD---EPTIGLHPRDTERL  505 (916)
T ss_dssp             TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEE---CTTTTCCGGGHHHH
T ss_pred             ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEE---CCccCCCHHHHHHH
Confidence             3333  79999999999999999887  99999   99999998877644

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.01  E-value=1.9e-10  Score=81.68  Aligned_cols=54  Identities=26%  Similarity=0.182  Sum_probs=39.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL   65 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l   65 (143)
                      ..++|+||||||||||+++|++.+    |.+.+++.    ++.. .....+..+++++|+...
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d----~~~~-~~~~~~~~~g~~~~~~~~   83 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEAD----AFHS-PENIATMQRGIPLTDEDR   83 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGG----GGSC-HHHHHHHHTTCCCCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh----CCeEEccc----cccc-HHHHHHHhcCCCCCCccc
Confidence            578999999999999999999976    88988874    2221 111223357888887554

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.01  E-value=3.9e-10  Score=80.39  Aligned_cols=98  Identities=14%  Similarity=-0.045  Sum_probs=56.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK   81 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~   81 (143)
                      +..++|+||||||||||++.+++  .+..+.++++..      ...+..++.+..    +...      ...      ++
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~------~~~~~~~~~~~~----~~~~------~~~------~~   75 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE------GGFSPERLVQMA----ETRG------LNP------EE   75 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS------CCCCHHHHHHHH----HTTT------CCH------HH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC------CCCCHHHHHHHH----HhcC------CCh------HH
Confidence            35689999999999999999999  444455555542      111222222211    1111      011      11


Q ss_pred             HHHHhhhhCCCcCCchh--HHHHHHHHHHhhc-CCcccccCCccccchhhh
Q 032336           82 LVKLIDKSNGYIFAGMD--ASAVEFSKIAVRN-VDWDYYRYPSFHLFQSLA  129 (143)
Q Consensus        82 ~l~~l~~~~~~~lSgGe--~qrv~ia~al~~~-p~~llld~~~~~~~~~~~  129 (143)
                      +++.+.+.   ..++++  +++++.+++++.+ |+++++|   ||++.++.
T Consensus        76 ~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~lliiD---~~~~~l~~  120 (220)
T 2cvh_A           76 ALSRFILF---TPSDFKEQRRVIGSLKKTVDSNFALVVVD---SITAHYRA  120 (220)
T ss_dssp             HHHHEEEE---CCTTTSHHHHHHHHHHHHCCTTEEEEEEE---CCCCCTTG
T ss_pred             HhhcEEEE---ecCCHHHHHHHHHHHHHHhhcCCCEEEEc---CcHHHhhh
Confidence            22222111   123343  4678888888875 9999999   77776654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.94  E-value=1.4e-11  Score=97.10  Aligned_cols=25  Identities=4%  Similarity=0.042  Sum_probs=23.0

Q ss_pred             CCchhHHHHHHHHHHhhcCCccccc
Q 032336           94 FAGMDASAVEFSKIAVRNVDWDYYR  118 (143)
Q Consensus        94 lSgGe~qrv~ia~al~~~p~~llld  118 (143)
                      +|+|++|++.++++|+..|.++++-
T Consensus       253 ls~g~~el~~la~aL~~~P~ILVlN  277 (416)
T 1udx_A          253 LETLRKEVGAYDPALLRRPSLVALN  277 (416)
T ss_dssp             HHHHHHHHHHHCHHHHHSCEEEEEE
T ss_pred             HHHHHHHHHHHhHHhhcCCEEEEEE
Confidence            5789999999999999999999984

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.93  E-value=4.5e-10  Score=90.63  Aligned_cols=37  Identities=27%  Similarity=0.423  Sum_probs=34.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      +..++|+||||||||||+++|+|+++|+.|.|.++|.
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~  296 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT  296 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence            3568999999999999999999999999999999885

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.91  E-value=5.2e-10  Score=81.18  Aligned_cols=60  Identities=23%  Similarity=0.287  Sum_probs=40.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhh--ccccHHH----HHhhcchhcccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAV--HNSACRK----LTKELCDVIEDYSL   65 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~~~~----~~~~ig~V~Q~~~l   65 (143)
                      +..++|.|+|||||||++++|+++    .|+|.+.+.......  .......    .++.+++++|...+
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l   85 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVT   85 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHH
Confidence            457899999999999999999997    788988875221100  0112221    13567888887554

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.89  E-value=1.2e-10  Score=83.62  Aligned_cols=58  Identities=28%  Similarity=0.292  Sum_probs=43.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc---ccCCceEEE--------cceeehhhhc-cccHHHHHhhcchhcccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL---SLIGSNICC--------SNVFYLQAVH-NSACRKLTKELCDVIEDY   63 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~---~~~~G~i~~--------~g~~~~~~~~-~~~~~~~~~~ig~V~Q~~   63 (143)
                      ...++|+|||||||||++++|++.+   .++.|++..        .|.    ++. ......+++.+++++|++
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHV----DVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTC----CTTCHHHHHHHHHTCCEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCC----CccCHHHHHHHHHhCceeeecc
Confidence            3579999999999999999998766   778888875        343    221 233456777899998864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.88  E-value=1e-09  Score=92.99  Aligned_cols=119  Identities=8%  Similarity=-0.091  Sum_probs=74.2

Q ss_pred             CCcHHHHHHHHhCC---------cccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--ccCCh-------
Q 032336           12 GSGKTTYCNGMSQF---------LSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--STLDI-------   73 (143)
Q Consensus        12 GaGKSTLl~~l~g~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--~~~~~-------   73 (143)
                      -.||+|+.+.+...         +.+..|+|.++|+.+. ++...+..++...+.-++|++.....  .....       
T Consensus       272 ~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~-~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  350 (842)
T 2vf7_A          272 ASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDIT-ELSRLPLARVSELLRPYAEEREPGHAERVKNRPEQAIALQ  350 (842)
T ss_dssp             HHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHH-HHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCSSHHHHHH
T ss_pred             HHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHH-HHhhcCHHHHHHHHHhhhhhhhhcccchhhcchhhHHHHH
Confidence            35789988877663         3456788999997543 33345555554444444543321100  00111       


Q ss_pred             ----hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcC--CcccccCCccccchhhhhhhhhc
Q 032336           74 ----QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNV--DWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        74 ----~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p--~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          +...+++ .+..+++.    ++..  +||||+|||+||++|+.+|  .+++||   ||++.|+....++.
T Consensus       351 ~i~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILD---EPT~~Ld~~~~~~L  420 (842)
T 2vf7_A          351 RMAADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLD---EPSAGLHPADTEAL  420 (842)
T ss_dssp             HHHHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEE---CTTTTCCGGGHHHH
T ss_pred             HHHHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEee---CccccCCHHHHHHH
Confidence                1112222 35555553    3333  7999999999999999999  599999   99999988776643

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.87  E-value=1.9e-10  Score=90.88  Aligned_cols=51  Identities=10%  Similarity=0.072  Sum_probs=31.3

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV   66 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~   66 (143)
                      .++|+||||||||||+++|+|+.        ++|..    +........++.++|++|+..++
T Consensus        44 ~vaLvG~nGaGKSTLln~L~G~~--------l~g~~----~~~~~~~~~~~~i~~v~Q~~~l~   94 (427)
T 2qag_B           44 NILCVGETGLGKSTLMDTLFNTK--------FEGEP----ATHTQPGVQLQSNTYDLQESNVR   94 (427)
T ss_dssp             EEEEECSTTSSSHHHHHHHHTSC--------C-----------CCSSCEEEEEEEEEEC--CE
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc--------ccCCc----CCCCCccceEeeEEEEeecCccc
Confidence            39999999999999999999984        22221    11000111234689999987654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.87  E-value=5.1e-10  Score=94.48  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=22.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+||||||||||||+|+|+.
T Consensus       608 ~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          608 RMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            468999999999999999999974

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.86  E-value=6.5e-10  Score=80.47  Aligned_cols=25  Identities=32%  Similarity=0.316  Sum_probs=16.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHh-CCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMS-QFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~-g~~   26 (143)
                      +..++|+||||||||||+++|+ +++
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4578999999999999999999 998

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.85  E-value=2.8e-09  Score=83.65  Aligned_cols=57  Identities=9%  Similarity=0.015  Sum_probs=38.9

Q ss_pred             eeeEEEECCCCCcHHHHHH--HHhCCcccCCc-----eEEEcceeehhhhccccHHHHHhhcchhcc
Q 032336            2 VFGQVVIGPPGSGKTTYCN--GMSQFLSLIGS-----NICCSNVFYLQAVHNSACRKLTKELCDVIE   61 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~--~l~g~~~~~~G-----~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q   61 (143)
                      +..++|+||||||||||++  ++.++.+++.|     .+++++..   .......+.+++++++.+|
T Consensus       178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---~~~~~rl~~~a~~~gl~~~  241 (400)
T 3lda_A          178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---TFRPVRLVSIAQRFGLDPD  241 (400)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---CCCHHHHHHHHHHTTCCHH
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---ccCHHHHHHHHHHcCCChH
Confidence            3568999999999999999  44677776444     78887741   1122233445667887766

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.82  E-value=1.1e-09  Score=76.66  Aligned_cols=33  Identities=18%  Similarity=0.115  Sum_probs=27.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc-CCceEE
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-IGSNIC   34 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-~~G~i~   34 (143)
                      +..++|+||||||||||++.|.+.+++ ..|.|.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~   38 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP   38 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence            567899999999999999999998763 445553

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.80  E-value=8.6e-10  Score=89.72  Aligned_cols=86  Identities=13%  Similarity=0.134  Sum_probs=53.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCc-eEE-Ecceeehhhh------ccccHHHHHhhcchhccccccc-----c-
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS-NIC-CSNVFYLQAV------HNSACRKLTKELCDVIEDYSLV-----N-   67 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~i~-~~g~~~~~~~------~~~~~~~~~~~ig~V~Q~~~l~-----~-   67 (143)
                      +..++|+|+||||||||+++|++.+.|++| ++. ++|..+...+      .........+.+++++|+....     . 
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi~~  448 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAICA  448 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred             ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEEEe
Confidence            357899999999999999999999999886 785 7774221111      0011122345688998864311     1 


Q ss_pred             cccCChhhHHHHHHHHHHhh
Q 032336           68 FSTLDIQDKESVAKLVKLID   87 (143)
Q Consensus        68 ~~~~~~~~~~~~~~~l~~l~   87 (143)
                      .........+.+.++++.++
T Consensus       449 ~~~~~~~~r~~~r~lL~~~g  468 (552)
T 3cr8_A          449 PIAPYRQTRRDVRAMIEAVG  468 (552)
T ss_dssp             CCCCCHHHHHHHHHHHHTTS
T ss_pred             cCCccHHHHHHHHHHHHHcC
Confidence            11112344556777777665

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.79  E-value=1.4e-08  Score=76.62  Aligned_cols=37  Identities=22%  Similarity=0.170  Sum_probs=33.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      ...++|+|+||+||||+++.|++.+.+..|+|.+.+.
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~  134 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA  134 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence            3578999999999999999999999999999998774

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.77  E-value=1.6e-09  Score=76.80  Aligned_cols=36  Identities=25%  Similarity=0.223  Sum_probs=31.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceE--EEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNI--CCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i--~~~g~   38 (143)
                      +..++|+|||||||||+++.|++.+. ..|.+  +++|.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d   62 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGD   62 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCc
Confidence            46789999999999999999999987 77888  77774

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=98.75  E-value=2.3e-09  Score=73.23  Aligned_cols=39  Identities=10%  Similarity=-0.034  Sum_probs=35.1

Q ss_pred             CCchhHHHHHHH------HHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAVEFS------KIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv~ia------~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +||||+|||++|      ||++.+|+++++|   ||++.+|....+.+
T Consensus        58 LSgGe~qrv~lA~~Lalaral~~~p~lllLD---EPt~~LD~~~~~~l  102 (148)
T 1f2t_B           58 LSGGERIALGLAFRLAMSLYLAGEISLLILD---EPTPYLDEERRRKL  102 (148)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHSSCSEEEEE---SCSCTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHhhhHHHHHHcCCCCEEEEE---CCCccCCHHHHHHH
Confidence            799999999876      8999999999999   99999999877643

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.74  E-value=3.2e-09  Score=75.44  Aligned_cols=37  Identities=32%  Similarity=0.362  Sum_probs=32.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      +..++|+|+|||||||+++.|++.+++.+|.|.+.+.
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~   58 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM   58 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence            3579999999999999999999999888999887653

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.73  E-value=5e-09  Score=79.98  Aligned_cols=34  Identities=21%  Similarity=0.172  Sum_probs=29.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc--cCCceEEE
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS--LIGSNICC   35 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~--~~~G~i~~   35 (143)
                      .+.++|+||||||||||+++|.+++.  |++|.+.+
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~  127 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV  127 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence            36799999999999999999999987  56777544

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.72  E-value=5.1e-09  Score=73.93  Aligned_cols=30  Identities=27%  Similarity=0.152  Sum_probs=26.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS   31 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G   31 (143)
                      +..++|+|||||||||++++|++++.|+.|
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            457899999999999999999999877655

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.70  E-value=1e-08  Score=70.81  Aligned_cols=33  Identities=21%  Similarity=0.249  Sum_probs=28.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      +..++|+|||||||||+++.|++.+    |.+.+++.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d   40 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGD   40 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGG
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCc
Confidence            3578999999999999999999865    77888763

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.69  E-value=8.8e-09  Score=73.56  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=22.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      +..++|+||||||||||++.|.+.++
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34689999999999999999998765

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.66  E-value=1.2e-09  Score=83.53  Aligned_cols=35  Identities=26%  Similarity=0.391  Sum_probs=29.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc----ccCCceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL----SLIGSNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~----~~~~G~i~~~g   37 (143)
                      ..++|+||||+|||||+++|++.+    .+++|.+...+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~   90 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ   90 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH
Confidence            468999999999999999999998    67777776544

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.66  E-value=8.3e-09  Score=71.03  Aligned_cols=28  Identities=29%  Similarity=0.456  Sum_probs=24.5

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      |...++|+|||||||||++++|++.+.+
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~   30 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM   30 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4567999999999999999999997643

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.65  E-value=8.7e-09  Score=71.62  Aligned_cols=30  Identities=20%  Similarity=0.334  Sum_probs=26.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceE
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNI   33 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i   33 (143)
                      .++|+||||||||||+++|.+++.+..|..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~   57 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGGLSAKA   57 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence            578999999999999999999887776654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.63  E-value=9.5e-09  Score=70.07  Aligned_cols=35  Identities=14%  Similarity=0.025  Sum_probs=29.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCc--eEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGS--NICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G--~i~~~g~   38 (143)
                      ..++|+||||||||||++++++.+.+ +|  .+++++.
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~   73 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAA   73 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHH
Confidence            46899999999999999999999876 57  6777663

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.62  E-value=2e-08  Score=78.63  Aligned_cols=36  Identities=14%  Similarity=0.377  Sum_probs=32.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC------------CcccCCceEEEcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ------------FLSLIGSNICCSN   37 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g------------~~~~~~G~i~~~g   37 (143)
                      ...++|+|+||||||||+++|+|            ...|+.|.|.+.|
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~   67 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   67 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence            46799999999999999999999            5678899998876

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.62  E-value=5.4e-09  Score=84.10  Aligned_cols=97  Identities=18%  Similarity=0.230  Sum_probs=59.7

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc------ccc-----ccc--
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS------LVN-----FST--   70 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~------l~~-----~~~--   70 (143)
                      ++.|+||||+|||||+++|++...  .+.+.+++.    ++.........+.+..+||...      +|.     ...  
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~----~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r  139 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS----DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR  139 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGG----GGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehh----HHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhh
Confidence            589999999999999999999764  678888874    3322222233445667777642      110     000  


Q ss_pred             ------CChhhHHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCc
Q 032336           71 ------LDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDW  114 (143)
Q Consensus        71 ------~~~~~~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~  114 (143)
                            ...+....+.+++..++        |+++|+..++.|....|+.
T Consensus       140 ~~~~~~~~~e~~~~l~~LL~~Ld--------g~~~~~~viviAatn~p~~  181 (499)
T 2dhr_A          140 GSGVGGGNDEREQTLNQLLVEMD--------GFEKDTAIVVMAATNRPDI  181 (499)
T ss_dssp             SSSTTTSSHHHHHHHHHHHHHGG--------GCCSSCCCEEEECCSCGGG
T ss_pred             ccCcCCCcHHHHHHHHHHHHHhc--------ccccCccEEEEEecCChhh
Confidence                  01122234455555543        7777777777777777764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.57  E-value=2.6e-08  Score=71.09  Aligned_cols=27  Identities=26%  Similarity=0.220  Sum_probs=24.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      +..++|+||||||||||++.|++.+++
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            356899999999999999999999876

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.57  E-value=1e-08  Score=71.28  Aligned_cols=30  Identities=23%  Similarity=0.278  Sum_probs=26.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSN   32 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~   32 (143)
                      ..++|+||||+|||||++++++.+.|..|.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~   68 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGI   68 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence            568999999999999999999999877773

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=98.55  E-value=1.5e-08  Score=70.95  Aligned_cols=39  Identities=3%  Similarity=-0.053  Sum_probs=34.8

Q ss_pred             CCchhHHHHHHHHHHhhc----CCcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAVEFSKIAVRN----VDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv~ia~al~~~----p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +|||||||++||++++..    |+++++|   ||++.+|.....++
T Consensus        65 LSgGekqr~ala~~la~~~~~~~~~llLD---Ep~a~LD~~~~~~~  107 (173)
T 3kta_B           65 MSGGEKALTALAFVFAIQKFKPAPFYLFD---EIDAHLDDANVKRV  107 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHSCCSEEEEE---STTTTCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCCCCEEEEC---CCccCCCHHHHHHH
Confidence            799999999999999865    5999999   99999998877644

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.48  E-value=4.2e-08  Score=74.83  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=33.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      ..++|+||||+||||++..|++.+.+.+|+|.+.+.
T Consensus       106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~  141 (320)
T 1zu4_A          106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA  141 (320)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            468999999999999999999999999999998775

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.47  E-value=9.7e-08  Score=67.58  Aligned_cols=25  Identities=36%  Similarity=0.434  Sum_probs=22.4

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCC
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      |-+.++|+|||||||||+.++|+++
T Consensus         1 m~~~i~l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            1 MTYIVGLTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHC
Confidence            4467999999999999999999983

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.46  E-value=5.9e-08  Score=74.71  Aligned_cols=37  Identities=30%  Similarity=0.559  Sum_probs=32.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      .+.++|+|++|||||||++.|.+.+.+.+|+|.+.+.
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~  110 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV  110 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence            3679999999999999999999999888888876653

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.38  E-value=9.6e-08  Score=73.91  Aligned_cols=40  Identities=3%  Similarity=-0.174  Sum_probs=36.3

Q ss_pred             CCchhHHHHHHHHHHh---------hcCCcccccCCccccchhhhhhhhhcc
Q 032336           94 FAGMDASAVEFSKIAV---------RNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        94 lSgGe~qrv~ia~al~---------~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      +|+|||||++||++|+         .+|++||+|   ||++.||...+..++
T Consensus       266 lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLD---Ep~s~LD~~~~~~l~  314 (359)
T 2o5v_A          266 ASRGEGRTVALALRRAELELLREKFGEDPVLLLD---DFTAELDPHRRQYLL  314 (359)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEEC---CGGGCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEe---CccccCCHHHHHHHH
Confidence            6999999999999999         799999999   999999998776543

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.37  E-value=1.1e-07  Score=71.67  Aligned_cols=35  Identities=26%  Similarity=0.251  Sum_probs=30.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCc-eEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGS-NICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~i~~~g   37 (143)
                      ..++|+|||||||||+++.|++.+.+++| +|.+-+
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~  141 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT  141 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            46899999999999999999999988778 676654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.36  E-value=1.6e-07  Score=65.06  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=28.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCc--eEEEcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS--NICCSN   37 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G--~i~~~g   37 (143)
                      +..++|+|++||||||+++.|++.+++ .|  .+.+++
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~   41 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDG   41 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECC
Confidence            457899999999999999999998766 56  555555

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.35  E-value=1.9e-07  Score=72.74  Aligned_cols=52  Identities=25%  Similarity=0.283  Sum_probs=36.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL   65 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l   65 (143)
                      +..++|+||||||||||+++|++.   .+|.+.....      ..   ...+..++++||.+.+
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~------~~---~~~~~~lg~~~q~~~~  220 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNL------PL---DRLNFELGVAIDQFLV  220 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSS------CT---TTHHHHHGGGTTCSCE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEec------cc---hhHHHHHHHhcchhHH
Confidence            357899999999999999999984   4677764110      11   1123348889988753

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.34  E-value=1.5e-07  Score=74.06  Aligned_cols=39  Identities=3%  Similarity=-0.124  Sum_probs=35.3

Q ss_pred             CCchhHHHHHHHHHHhh----cCCcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAVEFSKIAVR----NVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv~ia~al~~----~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +||||||+++||++++.    +|+++|+|   ||++.||...+..+
T Consensus       334 lS~Gq~~~~~la~~la~~~~~~~~~lllD---Ep~~~LD~~~~~~l  376 (430)
T 1w1w_A          334 LSGGEKTVAALALLFAINSYQPSPFFVLD---EVDAALDITNVQRI  376 (430)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSSCCSEEEES---STTTTCCHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhcCCCCCEEEeC---CCcccCCHHHHHHH
Confidence            69999999999999995    79999999   99999999877644

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.33  E-value=2.9e-07  Score=78.79  Aligned_cols=52  Identities=6%  Similarity=0.022  Sum_probs=41.3

Q ss_pred             HHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcC--CcccccCCccccchhhhhhhhhcc
Q 032336           82 LVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNV--DWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        82 ~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p--~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .|..+++.    ++..  +||||+|||+||++|+.+|  ++|+||   ||++.|+....++.+
T Consensus       487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILD---EPTagLdp~~~~~L~  546 (972)
T 2r6f_A          487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLD---EPSIGLHQRDNDRLI  546 (972)
T ss_dssp             HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEE---CTTTTCCGGGHHHHH
T ss_pred             HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEe---CcccCCCHHHHHHHH
Confidence            35555653    3333  7999999999999999985  999999   999999987766543

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.33  E-value=1.5e-07  Score=75.79  Aligned_cols=38  Identities=11%  Similarity=-0.136  Sum_probs=35.6

Q ss_pred             CchhHHHHHHHHHHhhcC--CcccccCCccccchhhhhhhhhc
Q 032336           95 AGMDASAVEFSKIAVRNV--DWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        95 SgGe~qrv~ia~al~~~p--~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ||||+|||+||++++.+|  ++|++|   ||++.+|....+.+
T Consensus       399 SgG~~qrv~la~~l~~~~~~~~lilD---Ep~~gld~~~~~~i  438 (517)
T 4ad8_A          399 SGGELSRVMLAVSTVLGADTPSVVFD---EVDAGIGGAAAIAV  438 (517)
T ss_dssp             CSSHHHHHHHHHHHHHCCCSSEEEEC---SCSSSCCTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCCEEEEe---CCcCCCCHHHHHHH
Confidence            999999999999999999  999999   99999999877654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.33  E-value=5e-07  Score=71.33  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=30.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc------------cCCceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS------------LIGSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~------------~~~G~i~~~g~   38 (143)
                      ..++|+|+||+|||||++.|+|...            +..|.+.++|.
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~  228 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR  228 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence            5789999999999999999999853            56788888885

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.33  E-value=5.1e-07  Score=71.63  Aligned_cols=107  Identities=11%  Similarity=0.063  Sum_probs=63.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCc-eEEEcceeehhhhccccHHHHHhh-----cchhcccccccccccCChhhH
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGS-NICCSNVFYLQAVHNSACRKLTKE-----LCDVIEDYSLVNFSTLDIQDK   76 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~-----ig~V~Q~~~l~~~~~~~~~~~   76 (143)
                      ..+.|.|++|+|||||+..+++...+..| .|.+.+.    .   .+..++..+     .++-++..   .......++.
T Consensus       204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~----E---~s~~~l~~r~~~~~~~~~~~~l---~~g~l~~~~~  273 (454)
T 2r6a_A          204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL----E---MSAQQLVMRMLCAEGNINAQNL---RTGKLTPEDW  273 (454)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES----S---SCHHHHHHHHHHHHHTCCHHHH---HTSCCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC----C---CCHHHHHHHHHHHHcCCCHHHH---hcCCCCHHHH
Confidence            46889999999999999999987766545 5655442    1   122222222     23322221   1122344555


Q ss_pred             HHHHHHHHHhhhh-----CCCcCCchhHHHHHHHHHHh--hcCCcccccCCc
Q 032336           77 ESVAKLVKLIDKS-----NGYIFAGMDASAVEFSKIAV--RNVDWDYYRYPS  121 (143)
Q Consensus        77 ~~~~~~l~~l~~~-----~~~~lSgGe~qrv~ia~al~--~~p~~llld~~~  121 (143)
                      ..+.++++.+...     +...+|.++.+  ..++.++  .+|+++++|+..
T Consensus       274 ~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~  323 (454)
T 2r6a_A          274 GKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQ  323 (454)
T ss_dssp             HHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGG
T ss_pred             HHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHH
Confidence            6666777666532     22224666654  4666666  689999999654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.31  E-value=3.7e-07  Score=64.66  Aligned_cols=25  Identities=32%  Similarity=0.414  Sum_probs=23.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +..++|+|++||||||+++.|++.+
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            4679999999999999999999976

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.31  E-value=1.6e-07  Score=76.22  Aligned_cols=36  Identities=28%  Similarity=0.347  Sum_probs=31.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      ..++|+||||+|||||+++|++.+.+..|.|.+.+.
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~  144 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV  144 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence            468899999999999999999999888888877763

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.29  E-value=2.8e-07  Score=65.01  Aligned_cols=22  Identities=23%  Similarity=0.229  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ..++|+|+|||||||+++.|++
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999999998

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.29  E-value=2.1e-07  Score=66.31  Aligned_cols=36  Identities=17%  Similarity=0.063  Sum_probs=31.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCc--eEEEcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS--NICCSN   37 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G--~i~~~g   37 (143)
                      +..++|+|++||||||+.+.|.+.+.|..|  .+.+++
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~   62 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG   62 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence            456899999999999999999999987788  777765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.28  E-value=4.2e-07  Score=62.99  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=21.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ++.++|+|++|+|||||++.+.+..
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC
Confidence            5789999999999999999999964

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.28  E-value=4.1e-07  Score=64.18  Aligned_cols=30  Identities=23%  Similarity=0.329  Sum_probs=24.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      .++|+|++||||||+.+.|++.+    |.+.+++
T Consensus        20 ~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~   49 (202)
T 3t61_A           20 SIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG   49 (202)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence            68999999999999999998765    4445543

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.26  E-value=3.7e-07  Score=65.74  Aligned_cols=55  Identities=18%  Similarity=0.175  Sum_probs=32.5

Q ss_pred             eeEEEECCCCCcHHHHHHHH-hCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGM-SQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIED   62 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l-~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~   62 (143)
                      ..+.|+||||||||||+..+ ....+...+.+++...     .......+....+++.+|+
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e-----~~~~~~~~~~~~~g~~~~~   79 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE-----EHPVQVRQNMAQFGWDVKP   79 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS-----SCHHHHHHHHHTTTCCCHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-----CCHHHHHHHHHHcCCCHHH
Confidence            46889999999999996544 5544444445555442     1112222333456776664

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.24  E-value=5.3e-07  Score=61.31  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=18.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ..+|+|||||||||++.+|.-
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999998863

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.23  E-value=9.4e-07  Score=60.96  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=21.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|++|+|||||++.+++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            67999999999999999999984

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.23  E-value=7e-07  Score=69.08  Aligned_cols=21  Identities=24%  Similarity=0.275  Sum_probs=19.8

Q ss_pred             eEEEECCCCCcHHHHHHHHhC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .++|+||||||||||+++|.+
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            578999999999999999997

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.20  E-value=5.1e-07  Score=74.88  Aligned_cols=59  Identities=14%  Similarity=0.058  Sum_probs=44.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCccc--CCceEEEcceeehhhhccccHHHHHhhcchhccccccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSL--IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV   66 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~   66 (143)
                      ..++|+|++|+|||||++.|.+...+  ..|+| .+|.    .+..+...+.++.+++.+|...++
T Consensus        10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~----~~~d~~~~e~~~giti~~~~~~~~   70 (665)
T 2dy1_A           10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGT----TTTDYTPEAKLHRTTVRTGVAPLL   70 (665)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTC----CSSCCSHHHHHTTSCCSCEEEEEE
T ss_pred             cEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCc----ccccCCHHHHhcCCeEEecceEEe
Confidence            57899999999999999999976554  67888 5554    344455566777788888876543

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.20  E-value=6.8e-07  Score=62.23  Aligned_cols=33  Identities=30%  Similarity=0.381  Sum_probs=28.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC   34 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~   34 (143)
                      ...++|+|++||||||+.+.|+..+.+..+.+.
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~   45 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE   45 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            356899999999999999999999887777764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.20  E-value=1.2e-06  Score=59.69  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=22.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|++|+|||||++.+.+..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC
Confidence            3679999999999999999999854

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.19  E-value=1.1e-06  Score=68.06  Aligned_cols=34  Identities=24%  Similarity=0.232  Sum_probs=28.7

Q ss_pred             EEEECCCCCcHHHHHHHHhCCcc-----------cCCceEEEcce
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFLS-----------LIGSNICCSNV   38 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~~-----------~~~G~i~~~g~   38 (143)
                      ++|+|+||||||||++.|+|...           +..|.|.++|.
T Consensus       182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~  226 (364)
T 2qtf_A          182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR  226 (364)
T ss_dssp             EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE
T ss_pred             EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE
Confidence            89999999999999999999875           56688888874

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.19  E-value=5.5e-07  Score=68.96  Aligned_cols=35  Identities=26%  Similarity=0.447  Sum_probs=30.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      ..++|+|+||+|||||++.|++.+.+.+++|.+-+
T Consensus        57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~   91 (341)
T 2p67_A           57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA   91 (341)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            57899999999999999999999888888876654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.19  E-value=1e-06  Score=69.01  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=29.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC-----------cccCCceEEEcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF-----------LSLIGSNICCSN   37 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~-----------~~~~~G~i~~~g   37 (143)
                      ...++|+|+||+||||||+.|++.           ..|..|.+.+.+
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~   68 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD   68 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence            467999999999999999999998           567778777654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=98.18  E-value=5.9e-07  Score=62.76  Aligned_cols=37  Identities=22%  Similarity=0.105  Sum_probs=28.8

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcc
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSN   37 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g   37 (143)
                      |...++|+|++|||||||++.|.+.+++.   -|.|..++
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~   44 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   44 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence            45678999999999999999999876544   25555544

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.13  E-value=1.5e-06  Score=71.23  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=30.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCC-ceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIG-SNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~-G~i~~~g   37 (143)
                      ..+.|+||||+|||||+++|++++++.. |.+.+.+
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~   96 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP   96 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence            5789999999999999999999998877 7777655

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.10  E-value=1.6e-06  Score=59.56  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=22.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|++|+|||||++.+.+..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4689999999999999999999864

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.10  E-value=3.6e-06  Score=64.76  Aligned_cols=33  Identities=24%  Similarity=0.136  Sum_probs=24.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      ..+.|.||||||||||+..++.......|.+.+
T Consensus        62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vly   94 (349)
T 2zr9_A           62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAF   94 (349)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            468899999999999988877655444555544

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.09  E-value=1.2e-06  Score=67.61  Aligned_cols=56  Identities=16%  Similarity=0.038  Sum_probs=40.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceE-EEcceeehhhhccccHHHHHhhcchhcccccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNI-CCSNVFYLQAVHNSACRKLTKELCDVIEDYSL   65 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i-~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l   65 (143)
                      ..+.|.||||||||||+..++....+..|.+ ++++.    ..  .. ..+.+++++.+|+..+
T Consensus        62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E----~s--~~-~~ra~rlgv~~~~l~i  118 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE----HA--LD-PVYAKNLGVDLKSLLI  118 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS----CC--CC-HHHHHHHTCCGGGCEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc----cc--cc-hHHHHHcCCchhhhhh
Confidence            4688999999999999999999887777876 55442    11  11 2255678888776543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.08  E-value=1.4e-06  Score=64.20  Aligned_cols=25  Identities=36%  Similarity=0.313  Sum_probs=22.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +..++|+|++||||||+.++|++.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc
Confidence            5679999999999999999998754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.07  E-value=2.8e-06  Score=65.83  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=30.7

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhC-----------CcccCCceEEEcc
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQ-----------FLSLIGSNICCSN   37 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g-----------~~~~~~G~i~~~g   37 (143)
                      |...++|+|.+|+|||||++.|++           -+.|..|.+.+.+
T Consensus         1 m~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            778999999999999999999998           3356667776654

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=98.07  E-value=1.7e-06  Score=67.06  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=30.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      +.++|+||+||||||+++.+.....+..+.|.+.+
T Consensus        36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            56889999999999999999988878888887654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.07  E-value=2.1e-06  Score=62.22  Aligned_cols=33  Identities=30%  Similarity=0.256  Sum_probs=28.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      +..++|.||+||||||+++.|...+.+ .+.+..
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~   58 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM   58 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence            457899999999999999999999887 666654

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.07  E-value=1.8e-06  Score=68.23  Aligned_cols=36  Identities=22%  Similarity=0.193  Sum_probs=32.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      ..++++|+|||||||++..|++.+.+..+.|.+.+.
T Consensus        99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~  134 (425)
T 2ffh_A           99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA  134 (425)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence            568899999999999999999999999999988764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.06  E-value=2e-06  Score=60.86  Aligned_cols=24  Identities=33%  Similarity=0.369  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|||||||||+.+.|...+
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            468899999999999999998765

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.06  E-value=1.6e-06  Score=60.00  Aligned_cols=23  Identities=35%  Similarity=0.654  Sum_probs=20.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +..++|+|++||||||+.+.|+.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            56789999999999999999984

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.05  E-value=1.9e-06  Score=60.70  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=21.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+||+||||||+.+.|+..+
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            468999999999999999999765

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=98.04  E-value=2.5e-06  Score=60.74  Aligned_cols=20  Identities=30%  Similarity=0.564  Sum_probs=17.9

Q ss_pred             eEEEECCCCCcHHHHHHHHh
Q 032336            4 GQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~   23 (143)
                      ..+|+|||||||||++.+|.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            46899999999999999875

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.03  E-value=1.3e-06  Score=63.72  Aligned_cols=31  Identities=26%  Similarity=0.393  Sum_probs=25.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHh---CCcccCCceE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS---QFLSLIGSNI   33 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~---g~~~~~~G~i   33 (143)
                      ..++|.||+||||||+.+.|+   |+...+.|.+
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~   43 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM   43 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence            468999999999999999998   5555555655

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.03  E-value=3.2e-06  Score=57.95  Aligned_cols=24  Identities=38%  Similarity=0.502  Sum_probs=21.8

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhC
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |...+.|.|++||||||+.+.|+.
T Consensus         1 M~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            1 MKKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHh
Confidence            566789999999999999999986

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.03  E-value=7.7e-07  Score=71.67  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.4

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .++|+|+||||||||+.+|..+
T Consensus        62 ~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           62 FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             EEEEEESHHHHHHHHTHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHHH
Confidence            5789999999999999999554

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.02  E-value=4e-06  Score=60.57  Aligned_cols=29  Identities=21%  Similarity=0.313  Sum_probs=24.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGS   31 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G   31 (143)
                      +.++|+|++|+|||||++.|.|...+..+
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            57899999999999999999997654443

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.02  E-value=1.7e-06  Score=65.22  Aligned_cols=36  Identities=22%  Similarity=0.377  Sum_probs=32.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      ..++++|+||+||||++..|++.+.+..++|.+.+.
T Consensus        99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~  134 (297)
T 1j8m_F           99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA  134 (297)
T ss_dssp             EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence            468899999999999999999999988899987664

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.01  E-value=1.6e-06  Score=68.16  Aligned_cols=28  Identities=32%  Similarity=0.474  Sum_probs=23.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIG   30 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~   30 (143)
                      ..++|+|||||||||||++|+++..+.+
T Consensus        27 ~~~~i~G~nG~GKstll~ai~~~~~~~~   54 (430)
T 1w1w_A           27 NFTSIIGPNGSGKSNMMDAISFVLGVRS   54 (430)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence            4689999999999999999999876644

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.00  E-value=3.5e-06  Score=57.88  Aligned_cols=26  Identities=15%  Similarity=0.193  Sum_probs=22.5

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      |...+.|.|++||||||+.+.|+..+
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            34678999999999999999998755

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.98  E-value=3.6e-06  Score=64.68  Aligned_cols=32  Identities=22%  Similarity=0.290  Sum_probs=27.3

Q ss_pred             eEEEECCCCCcHHHHHHHHhC--CcccCCceEEE
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQ--FLSLIGSNICC   35 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g--~~~~~~G~i~~   35 (143)
                      .++|+|++|||||||++.|.|  ++++..|.+..
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~   69 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR   69 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence            689999999999999999999  66777776643

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.98  E-value=3.8e-06  Score=57.17  Aligned_cols=23  Identities=26%  Similarity=0.206  Sum_probs=20.3

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|.|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.94  E-value=2.5e-06  Score=61.75  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=24.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC---CcccCCceE
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ---FLSLIGSNI   33 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g---~~~~~~G~i   33 (143)
                      .+.++|+|++||||||+.+.|++   +..++.|.+
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~   50 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM   50 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence            35789999999999999999986   333455544

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.92  E-value=4.8e-06  Score=64.26  Aligned_cols=26  Identities=31%  Similarity=0.391  Sum_probs=22.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      +.++|+|++|+|||||++.|.+...+
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~~~~~~   63 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLFLTDLY   63 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHTTCCC-
T ss_pred             EEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence            67899999999999999998876433

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.92  E-value=5.4e-06  Score=58.49  Aligned_cols=20  Identities=35%  Similarity=0.622  Sum_probs=17.8

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 032336            5 QVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g   24 (143)
                      +.|+||||||||||++.|..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999988753

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.92  E-value=3.1e-06  Score=65.41  Aligned_cols=39  Identities=15%  Similarity=0.083  Sum_probs=33.9

Q ss_pred             CCchhHHHH------HHHHHHhhc-CCcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAV------EFSKIAVRN-VDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv------~ia~al~~~-p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +||||+|||      ++|++++.+ |+++++|   ||++.+|...+..+
T Consensus       281 lS~G~~~~~~lal~la~a~~l~~~~~~~lllD---Ep~~~LD~~~~~~l  326 (371)
T 3auy_A          281 LSGGEQIAVALSLRLAIANALIGNRVECIILD---EPTVYLDENRRAKL  326 (371)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEE---STTTTCCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEe---CCCCcCCHHHHHHH
Confidence            699999988      557888889 9999999   99999998877643

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.91  E-value=1.3e-06  Score=61.69  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=22.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLI   29 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~   29 (143)
                      .++|.|++||||||+++.|...+...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~   27 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            57899999999999999998877543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.91  E-value=6.4e-06  Score=61.96  Aligned_cols=24  Identities=25%  Similarity=0.234  Sum_probs=21.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|++|+|||||++.|.|..
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Confidence            368999999999999999999874

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.90  E-value=9.6e-06  Score=56.85  Aligned_cols=36  Identities=19%  Similarity=0.192  Sum_probs=27.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC--------cccCCceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF--------LSLIGSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~--------~~~~~G~i~~~g~   38 (143)
                      +.++|+|++|+|||||++.+.+-        ..++.+.+.++|.
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~   69 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM   69 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence            57899999999999999999872        2234566776663

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.90  E-value=4.5e-06  Score=61.10  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=26.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      ..+.|+|++||||||+.+.|+..+.  .+.+.+++
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~   65 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG   65 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence            5688999999999999999988653  34566666

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.90  E-value=3e-06  Score=64.42  Aligned_cols=31  Identities=23%  Similarity=0.326  Sum_probs=26.0

Q ss_pred             EEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      +.+.||+|+||||+++++++.+.+..+.+.+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~   79 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMV   79 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence            7899999999999999999988766655433

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.89  E-value=1.6e-05  Score=55.00  Aligned_cols=37  Identities=19%  Similarity=0.203  Sum_probs=27.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHH-hCC----cccCCc----eEEEcce
Q 032336            2 VFGQVVIGPPGSGKTTYCNGM-SQF----LSLIGS----NICCSNV   38 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l-~g~----~~~~~G----~i~~~g~   38 (143)
                      .+.++|+|++|+|||||++.+ .+.    +.|+.+    .+.++|.
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~   65 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ   65 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence            468999999999999999654 444    456656    5556663

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.89  E-value=6.2e-06  Score=60.87  Aligned_cols=25  Identities=28%  Similarity=0.437  Sum_probs=22.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      +.++|+|++|||||||++.+.|...
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCc
Confidence            6799999999999999999999753

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.89  E-value=7.8e-06  Score=58.17  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=21.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ...++|.|++||||||+++.|+.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999987

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.87  E-value=7.1e-06  Score=55.60  Aligned_cols=19  Identities=32%  Similarity=0.627  Sum_probs=17.9

Q ss_pred             eEEEECCCCCcHHHHHHHH
Q 032336            4 GQVVIGPPGSGKTTYCNGM   22 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l   22 (143)
                      .++|.||+||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999998

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.86  E-value=8.1e-06  Score=57.00  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.5

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|.|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            47899999999999999998743

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.86  E-value=8.2e-06  Score=57.24  Aligned_cols=26  Identities=27%  Similarity=0.302  Sum_probs=22.6

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      |...++|.|++||||||+.+.|+..+
T Consensus         1 m~~~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            1 MRGIVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            55679999999999999999998743

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.86  E-value=7.9e-06  Score=56.21  Aligned_cols=23  Identities=39%  Similarity=0.511  Sum_probs=20.5

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.86  E-value=8.4e-06  Score=56.99  Aligned_cols=30  Identities=20%  Similarity=0.146  Sum_probs=24.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      ..++|.|++||||||+.+.|+..     |-..++.
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~   38 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDL   38 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence            57899999999999999999974     5555543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.86  E-value=9.7e-06  Score=56.40  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=26.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC----c----ccCCceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF----L----SLIGSNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~----~----~~~~G~i~~~g   37 (143)
                      +.++|+|++|+|||||++.+.+-    +    .++.+.+.+++
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~   66 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN   66 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence            57899999999999999999872    2    22345566665

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.84  E-value=6.8e-06  Score=65.03  Aligned_cols=36  Identities=28%  Similarity=0.389  Sum_probs=31.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      ..++++|||||||||++..|+..+.+..++|.+-+.
T Consensus        98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~  133 (433)
T 3kl4_A           98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA  133 (433)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence            468899999999999999999999988889977553

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.83  E-value=9.7e-06  Score=56.04  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..+.|+||+||||||+.+.|+..+
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999997543

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.81  E-value=1.1e-05  Score=54.99  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=21.6

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCC
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      |-..++|.|++||||||+.+.|+..
T Consensus         1 m~~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            1 MTEPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCCCEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4457899999999999999999764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.81  E-value=1.2e-05  Score=55.82  Aligned_cols=25  Identities=32%  Similarity=0.393  Sum_probs=21.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ...+.|.|++||||||+.+.|+..+
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            4568899999999999999997643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.79  E-value=1.2e-05  Score=55.49  Aligned_cols=24  Identities=38%  Similarity=0.307  Sum_probs=21.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|.|++||||||+.+.|+..+
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999998744

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.79  E-value=1.1e-05  Score=55.73  Aligned_cols=25  Identities=36%  Similarity=0.558  Sum_probs=21.2

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCC
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      |...++|+|++||||||+.+.|+..
T Consensus         1 M~~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            1 MAPKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             -CCSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            5567999999999999999998753

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.79  E-value=1.2e-05  Score=59.03  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.3

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|+||||||||||.+.|+..+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            57899999999999999998643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.78  E-value=1.5e-05  Score=59.26  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=22.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|++|+|||||++.++|..
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC
Confidence            4679999999999999999999853

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.78  E-value=1.1e-05  Score=54.14  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|++|+|||||++.+.+..
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEEECCCCCCHHHHHHHHcCcc
Confidence            679999999999999999998754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.77  E-value=1.4e-05  Score=55.18  Aligned_cols=25  Identities=36%  Similarity=0.484  Sum_probs=21.4

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCC
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      |...++|.|++||||||+.+.|+..
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4457899999999999999999753

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.77  E-value=1.2e-05  Score=58.68  Aligned_cols=33  Identities=27%  Similarity=0.496  Sum_probs=25.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV   38 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~   38 (143)
                      ++.|+||+|+|||||++.|++.....  -+.+++.
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~   79 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS   79 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred             eEEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence            57899999999999999999876421  3555553

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.76  E-value=1.3e-05  Score=53.36  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++++|+.|+|||||++.+.+-
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.76  E-value=1.9e-05  Score=53.11  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=21.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999999873

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.75  E-value=1.9e-05  Score=53.15  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=21.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|++|+|||||++.+.+..
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC-
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhcc
Confidence            3689999999999999999997643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.75  E-value=1.9e-05  Score=53.44  Aligned_cols=25  Identities=28%  Similarity=0.522  Sum_probs=21.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|++|+|||||++.+.+-.
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCC
Confidence            3679999999999999999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.74  E-value=1.5e-05  Score=54.91  Aligned_cols=30  Identities=17%  Similarity=0.159  Sum_probs=25.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc----ccCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL----SLIGS   31 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~----~~~~G   31 (143)
                      .+.++|+|++|+|||||++.+.+-.    .|+.|
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g   49 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQG   49 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence            3679999999999999999998763    45666

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.74  E-value=1.7e-05  Score=53.19  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=21.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            467999999999999999998764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.74  E-value=1.9e-05  Score=54.61  Aligned_cols=23  Identities=35%  Similarity=0.651  Sum_probs=20.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ...++|.|++||||||+.+.|+.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998865

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.74  E-value=1.3e-05  Score=55.68  Aligned_cols=27  Identities=26%  Similarity=0.023  Sum_probs=23.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLI   29 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~   29 (143)
                      ..++|+|++|||||||+..|...++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~   31 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVRE   31 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence            468999999999999999998876543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.73  E-value=1.5e-05  Score=55.06  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|++|+|||||++.+.+-.
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            578999999999999999998764

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.72  E-value=1.7e-05  Score=54.80  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=21.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      .++|.|++||||||+.+.|+..+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999987553

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.72  E-value=1.8e-05  Score=55.00  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=20.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..++|+|++||||||+.+.|+..
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.72  E-value=2.1e-05  Score=53.41  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=21.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|+.|+|||||++.+.+-.
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            678999999999999999998753

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.71  E-value=1.9e-05  Score=54.38  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ..+.|.|++||||||+.+.|+.
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            3588999999999999999983

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.71  E-value=1.9e-05  Score=52.70  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            67999999999999999888643

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.70  E-value=1.4e-05  Score=55.65  Aligned_cols=25  Identities=36%  Similarity=0.533  Sum_probs=21.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ...++|.|++||||||+.+.|+..+
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999997643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.69  E-value=2.2e-05  Score=52.38  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=21.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|+.|+|||||++.+.+-.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999987653

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.69  E-value=2.1e-05  Score=58.81  Aligned_cols=33  Identities=30%  Similarity=0.400  Sum_probs=24.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      ..+.|.|||||||||+.+.|...++  .+.+.++.
T Consensus        34 ~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            4678999999999999999976432  35555554

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.69  E-value=2.2e-05  Score=52.49  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=21.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            367999999999999999998754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.68  E-value=2.4e-05  Score=52.68  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=21.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|++|+|||||++.+.+-
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            367999999999999999988754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.68  E-value=2.4e-05  Score=52.44  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            68999999999999999998753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.68  E-value=2.8e-05  Score=54.53  Aligned_cols=27  Identities=22%  Similarity=0.276  Sum_probs=22.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      ...++|.|++||||||+.+.|+..+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            357899999999999999999876543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.68  E-value=2.3e-05  Score=52.61  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|+.|+|||||++.+.+-.
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            578999999999999999987654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.68  E-value=2.6e-05  Score=53.69  Aligned_cols=26  Identities=35%  Similarity=0.286  Sum_probs=22.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      .+.++|+|+.|+|||||++.+.+...
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            36799999999999999999988654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.67  E-value=2.5e-05  Score=52.38  Aligned_cols=23  Identities=17%  Similarity=0.263  Sum_probs=20.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999888754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.67  E-value=2.7e-05  Score=52.86  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=21.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|++|+|||||++.+.+-
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999999764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.67  E-value=2.4e-05  Score=53.07  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            67899999999999999998754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.67  E-value=2.4e-05  Score=53.14  Aligned_cols=24  Identities=21%  Similarity=0.439  Sum_probs=20.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            367999999999999999888764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.67  E-value=1.7e-05  Score=54.25  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=20.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .+.++|+|++|+|||||++.+.+
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            36799999999999999999874

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.66  E-value=2.5e-05  Score=54.60  Aligned_cols=24  Identities=33%  Similarity=0.314  Sum_probs=21.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|.|+.||||||+.+.|+..+
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468999999999999999998866

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.66  E-value=2.7e-05  Score=53.28  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=21.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhC
Confidence            367999999999999999999764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.66  E-value=2.4e-05  Score=52.57  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=21.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            367999999999999999998764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.65  E-value=2.4e-05  Score=55.01  Aligned_cols=25  Identities=28%  Similarity=0.177  Sum_probs=21.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ...++|.|+.||||||+.+.|+..+
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999998643

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.65  E-value=2.7e-05  Score=55.17  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=19.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .++|.||+||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.65  E-value=2.8e-05  Score=52.13  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .+.++|+|+.|+|||||++.+.+
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            36799999999999999998875

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.65  E-value=3.4e-05  Score=52.36  Aligned_cols=24  Identities=33%  Similarity=0.382  Sum_probs=21.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            367999999999999999998764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.65  E-value=2.9e-05  Score=57.54  Aligned_cols=25  Identities=36%  Similarity=0.412  Sum_probs=23.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ++.++|+|++|||||||++.+.|..
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC
Confidence            6789999999999999999999864

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.64  E-value=2.3e-05  Score=53.72  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=21.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|++|+|||||++.+.+-.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcC
Confidence            578999999999999999998754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.64  E-value=2.2e-05  Score=53.99  Aligned_cols=25  Identities=16%  Similarity=0.143  Sum_probs=21.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|+.|+|||||++.+.+-.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCc
Confidence            3578999999999999999998763

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.64  E-value=2.4e-05  Score=58.16  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=27.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC   34 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~   34 (143)
                      ..+.|.||+|+||||+.+.|++.+.+..+.+.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~   79 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMI   79 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence            46889999999999999999998877766554

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.63  E-value=2.7e-05  Score=52.84  Aligned_cols=24  Identities=29%  Similarity=0.326  Sum_probs=21.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            367999999999999999988765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.63  E-value=2.5e-05  Score=53.98  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=21.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999875

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.63  E-value=2.9e-05  Score=54.32  Aligned_cols=24  Identities=25%  Similarity=0.594  Sum_probs=21.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|++|+|||||++.+.+.
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhc
Confidence            368999999999999999999754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.63  E-value=2.9e-05  Score=53.70  Aligned_cols=23  Identities=35%  Similarity=0.557  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            67999999999999999988764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.62  E-value=3.5e-05  Score=57.33  Aligned_cols=24  Identities=38%  Similarity=0.502  Sum_probs=21.6

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhC
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |...+.|.|++||||||+.+.|+.
T Consensus         1 M~~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            1 MKKIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            566789999999999999999985

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.62  E-value=3e-05  Score=53.40  Aligned_cols=23  Identities=17%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            67999999999999999999875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.62  E-value=3.1e-05  Score=54.86  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .++|.||+||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999653

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.62  E-value=2.9e-05  Score=53.86  Aligned_cols=24  Identities=42%  Similarity=0.559  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|.|++||||||+.+.|+..+
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999997543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.61  E-value=3.3e-05  Score=51.99  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=20.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .+.++|+|+.|+|||||++.+.+
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            36799999999999999999865

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.60  E-value=3.1e-05  Score=57.19  Aligned_cols=24  Identities=33%  Similarity=0.481  Sum_probs=21.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|++|+|||||++.|.+-
T Consensus         8 ~~~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A            8 EFTLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCC
Confidence            367999999999999999988664

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.60  E-value=2.9e-05  Score=59.56  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|+||+|||||++.+++..
T Consensus       168 ~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          168 PTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            568999999999999999999865

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.59  E-value=3.4e-05  Score=52.84  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999999753

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.59  E-value=3.2e-05  Score=54.19  Aligned_cols=32  Identities=22%  Similarity=0.170  Sum_probs=25.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC   34 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~   34 (143)
                      ..+.|.||+|+|||||++.++.........+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~   86 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSL   86 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            46889999999999999999987654444443

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.59  E-value=3.6e-05  Score=52.47  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            67999999999999999998754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.58  E-value=3.9e-05  Score=51.92  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=21.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|+.|+|||||++.+.+-.
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            679999999999999999987643

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.58  E-value=3.9e-05  Score=53.03  Aligned_cols=23  Identities=35%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998644

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.58  E-value=3.9e-05  Score=52.82  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            67999999999999999998754

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.58  E-value=3.2e-05  Score=59.66  Aligned_cols=20  Identities=30%  Similarity=0.446  Sum_probs=17.9

Q ss_pred             eEEEECCCCCcHHHHHHHHh
Q 032336            4 GQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~   23 (143)
                      ..+|+|||||||||+|-.|.
T Consensus        27 l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           27 IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            46899999999999998876

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.57  E-value=3.6e-05  Score=52.09  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            57899999999999999998753

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.57  E-value=3.9e-05  Score=52.14  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            57899999999999999998754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.57  E-value=4.7e-05  Score=52.23  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|+.|+|||||++.+.+-.
T Consensus        19 ~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           19 LRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            578999999999999999998643

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.57  E-value=4.3e-05  Score=53.59  Aligned_cols=24  Identities=33%  Similarity=0.667  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|.|+.||||||+.+.|+..+
T Consensus        21 ~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           21 MRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999997643

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.57  E-value=3.6e-05  Score=51.52  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +.++|+|++|+|||||++.+.+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            3689999999999999998864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.57  E-value=4.5e-05  Score=51.76  Aligned_cols=23  Identities=35%  Similarity=0.252  Sum_probs=20.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997643

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.56  E-value=4.6e-05  Score=53.40  Aligned_cols=23  Identities=35%  Similarity=0.554  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..++|.|++||||||+.+.|+..
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988743

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.56  E-value=4.1e-05  Score=53.37  Aligned_cols=23  Identities=35%  Similarity=0.544  Sum_probs=20.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .+.++|+|++|+|||||++.+.+
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            36899999999999999999875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.56  E-value=4.8e-05  Score=53.71  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|.|+.||||||+.+.|...
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            56899999999999999999864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.56  E-value=3.9e-05  Score=52.47  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            67999999999999999988754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.55  E-value=3.6e-05  Score=54.86  Aligned_cols=24  Identities=29%  Similarity=0.505  Sum_probs=20.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..+.|+||+||||||+.+.|+..+
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            357899999999999999997543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.55  E-value=4.7e-05  Score=55.49  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|.|++||||||+.+.|+..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999763

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.55  E-value=4.7e-05  Score=51.76  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            57899999999999999988765

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.55  E-value=4.1e-05  Score=52.66  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=21.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|++|+|||||++.+.+-
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999988764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.55  E-value=4e-05  Score=54.85  Aligned_cols=23  Identities=35%  Similarity=0.683  Sum_probs=20.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..++|.|++||||||+.+.|+..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999853

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.55  E-value=4.4e-05  Score=52.16  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            367899999999999999988754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.55  E-value=5.4e-05  Score=55.66  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=22.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|++|+|||||++.+.|..
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC
Confidence            3679999999999999999999854

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.54  E-value=5.7e-05  Score=52.60  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|+.|+|||||++.+.+-.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            3679999999999999999987653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.54  E-value=4.6e-05  Score=52.54  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|+.|+|||||++.+.+-.
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            679999999999999999887643

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.54  E-value=5.6e-05  Score=52.24  Aligned_cols=24  Identities=33%  Similarity=0.320  Sum_probs=21.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999874

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.53  E-value=4.8e-05  Score=53.01  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=21.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|+.|+|||||++.+.+-.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4679999999999999999887643

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.53  E-value=5e-05  Score=52.38  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|+.|+|||||++.+.+-.
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            579999999999999999988643

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=97.53  E-value=3.5e-05  Score=59.70  Aligned_cols=23  Identities=26%  Similarity=0.522  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..++|+|++|+|||||++.|++.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.53  E-value=4.4e-05  Score=57.15  Aligned_cols=33  Identities=27%  Similarity=0.458  Sum_probs=25.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      ..+.|.||+|+|||||++.+++...  .+-+.+++
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~   82 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG   82 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence            3588999999999999999998653  34444443

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.53  E-value=4.2e-05  Score=53.92  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|++|+|||||++.+.+-.
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            578999999999999999988754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.53  E-value=4.7e-05  Score=52.90  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=20.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            67999999999999999998754

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.53  E-value=4.3e-05  Score=61.62  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=29.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC--CcccCCceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ--FLSLIGSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g--~~~~~~G~i~~~g~   38 (143)
                      .++.|.|++||||||++++|..  +++++.+++.+...
T Consensus       168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~li  205 (512)
T 2ius_A          168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMI  205 (512)
T ss_dssp             CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence            4688999999999999999876  55667788876554

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=97.53  E-value=5.7e-05  Score=52.39  Aligned_cols=25  Identities=24%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|+.|+|||||++.+.+-.
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC
Confidence            3578999999999999999998653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=97.52  E-value=4.4e-05  Score=52.70  Aligned_cols=25  Identities=28%  Similarity=0.251  Sum_probs=22.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|+.|+|||||++.+.+-.
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3679999999999999999998754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.52  E-value=4.4e-05  Score=56.09  Aligned_cols=24  Identities=33%  Similarity=0.495  Sum_probs=21.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|++|||||||++.+.|..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Confidence            368999999999999999999874

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.52  E-value=5.7e-05  Score=52.55  Aligned_cols=25  Identities=16%  Similarity=0.122  Sum_probs=22.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|++|+|||||++.+.+-.
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcC
Confidence            4689999999999999999998854

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.52  E-value=4.5e-05  Score=52.73  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=20.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +.++|+|+.|+|||||++.+.+
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHc
Confidence            6799999999999999999976

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.52  E-value=3.4e-05  Score=59.55  Aligned_cols=25  Identities=32%  Similarity=0.694  Sum_probs=21.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ..++|+||+||||||+.++|++.+.
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3589999999999999999998753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.52  E-value=4.6e-05  Score=53.59  Aligned_cols=24  Identities=25%  Similarity=0.206  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|.|+.||||||+.+.|+..+
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            568999999999999999998543

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.51  E-value=2.4e-05  Score=66.00  Aligned_cols=32  Identities=0%  Similarity=-0.293  Sum_probs=27.3

Q ss_pred             CCchhHHHHHHHHHHhhcCCcccccCCccccc-hhh
Q 032336           94 FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLF-QSL  128 (143)
Q Consensus        94 lSgGe~qrv~ia~al~~~p~~llld~~~~~~~-~~~  128 (143)
                      .+.|+.+|..+++++..+++++++|   |+.. .++
T Consensus       191 ~T~G~l~r~l~~~~~l~~~~~lIlD---Eah~R~ld  223 (773)
T 2xau_A          191 MTDGMLLREAMEDHDLSRYSCIILD---EAHERTLA  223 (773)
T ss_dssp             EEHHHHHHHHHHSTTCTTEEEEEEC---SGGGCCHH
T ss_pred             ECHHHHHHHHhhCccccCCCEEEec---Cccccccc
Confidence            4789999999999999999999999   8874 555

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.51  E-value=4.5e-05  Score=52.74  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHhcC
Confidence            67999999999999999988864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.51  E-value=4.7e-05  Score=52.76  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            57999999999999999988754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.51  E-value=5.4e-05  Score=52.34  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            67999999999999999988754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.50  E-value=5.6e-05  Score=52.09  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            67999999999999999988743

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.50  E-value=5.6e-05  Score=51.52  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .+.++|+|++|+|||||++.+.+
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            35789999999999999988864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.50  E-value=6.1e-05  Score=51.82  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=21.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            367899999999999999998853

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.50  E-value=5.9e-05  Score=54.03  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997543

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.49  E-value=6.5e-05  Score=57.66  Aligned_cols=26  Identities=31%  Similarity=0.459  Sum_probs=22.1

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      |...++|.||+|||||||.+.|+..+
T Consensus         6 m~~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            6 KPFLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCcCcHHHHHHHHHHHc
Confidence            34578999999999999999888754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.49  E-value=6.1e-05  Score=52.63  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            67899999999999999998764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.49  E-value=5.6e-05  Score=56.25  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +.++|.|++||||||+.+.|..
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999983

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.49  E-value=5e-05  Score=53.45  Aligned_cols=23  Identities=39%  Similarity=0.530  Sum_probs=20.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|++|+|||||++.+.+-
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            67999999999999999987643

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.49  E-value=4.1e-05  Score=52.59  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=15.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.|.|++||||||+.+.|+..
T Consensus         7 ~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            7 IIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             EEEEECCC----CHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999999753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.49  E-value=6.4e-05  Score=51.22  Aligned_cols=23  Identities=13%  Similarity=0.170  Sum_probs=20.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .+.++|+|+.|+|||||++.+.+
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            36799999999999999998873

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.49  E-value=6.2e-05  Score=51.96  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=20.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            367899999999999999998753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.49  E-value=6.2e-05  Score=52.09  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|++|+|||||++.+.+-
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            67999999999999999998764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.48  E-value=6.3e-05  Score=53.53  Aligned_cols=24  Identities=38%  Similarity=0.704  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|+.||||||+.+.|+..+
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            358899999999999999997644

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.48  E-value=5.5e-05  Score=52.81  Aligned_cols=25  Identities=20%  Similarity=0.146  Sum_probs=21.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|+.|+|||||++.+.+-.
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCC
Confidence            3678999999999999999988753

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.48  E-value=6.8e-05  Score=53.53  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=22.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|++|+|||||++.+.+-.
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~~   53 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRAN   53 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3679999999999999999998753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.47  E-value=5.8e-05  Score=51.75  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=21.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            367899999999999999999864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.47  E-value=6.8e-05  Score=51.55  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            67999999999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.46  E-value=6.1e-05  Score=52.86  Aligned_cols=24  Identities=29%  Similarity=0.166  Sum_probs=21.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcC
Confidence            467999999999999999999864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.46  E-value=4.8e-05  Score=51.75  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=21.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|++|+|||||++.+.+-
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            368999999999999999988754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=97.46  E-value=3.9e-05  Score=54.07  Aligned_cols=24  Identities=38%  Similarity=0.519  Sum_probs=21.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus        11 ~~ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           11 TYKICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEEEECCTTSSHHHHHCBCTTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            478999999999999999988754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.46  E-value=7.4e-05  Score=54.31  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ..++|.||+||||||+.+.|+.
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999974

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.46  E-value=6.8e-05  Score=54.62  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|++|+|||||++.|.+-.
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            568999999999999999998753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.46  E-value=8.2e-05  Score=51.69  Aligned_cols=24  Identities=21%  Similarity=0.219  Sum_probs=20.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            367899999999999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.46  E-value=6.2e-05  Score=53.40  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHhCCc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ++|.|++||||||+.+.|+..+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999997633

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.46  E-value=8.3e-05  Score=52.34  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            57999999999999999999874

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.46  E-value=3e-05  Score=58.09  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|.||+||||||+.+.|...+
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            568999999999999999988744

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.46  E-value=5.9e-05  Score=52.70  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            68999999999999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.45  E-value=7e-05  Score=51.96  Aligned_cols=23  Identities=17%  Similarity=0.264  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            67999999999999999988754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.45  E-value=7e-05  Score=56.33  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .++|+|++|+|||||++.+.|.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999885

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.45  E-value=6.9e-05  Score=52.18  Aligned_cols=23  Identities=17%  Similarity=0.388  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            67999999999999999988754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.45  E-value=5.6e-05  Score=53.69  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ..+.|.||+|+|||||++.++....
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999987654

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.45  E-value=8.2e-05  Score=56.71  Aligned_cols=26  Identities=23%  Similarity=0.433  Sum_probs=22.3

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      |...++|+||+|||||||.+.|+..+
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45578999999999999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.45  E-value=6.5e-05  Score=51.10  Aligned_cols=23  Identities=22%  Similarity=0.206  Sum_probs=20.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999988754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=97.44  E-value=8.1e-05  Score=52.60  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            67999999999999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.44  E-value=6.6e-05  Score=52.96  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=21.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|++|+|||||++.+.+-
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999875

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.44  E-value=7.2e-05  Score=52.31  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            67899999999999999988754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.44  E-value=7.4e-05  Score=51.93  Aligned_cols=24  Identities=21%  Similarity=0.212  Sum_probs=21.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhC
Confidence            367999999999999999998653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.43  E-value=5.1e-05  Score=51.83  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=10.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEEECCCCC------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            367999999999999999988754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.43  E-value=3.2e-05  Score=54.70  Aligned_cols=24  Identities=21%  Similarity=0.147  Sum_probs=21.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|+.|+|||||++.+.+-.
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            578999999999999999998864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.43  E-value=8.1e-05  Score=51.44  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=20.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            367999999999999999877653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=97.42  E-value=9.5e-05  Score=52.74  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|++|+|||||++.+.+.
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            68999999999999999999863

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=97.42  E-value=7.2e-05  Score=52.23  Aligned_cols=24  Identities=25%  Similarity=0.162  Sum_probs=21.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            467999999999999999999864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.41  E-value=9.3e-05  Score=50.31  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .++|.|+.||||||+.+.|+..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.41  E-value=8.3e-05  Score=56.68  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=26.4

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCC--ceEEEc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIG--SNICCS   36 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~--G~i~~~   36 (143)
                      .+.|.||+|+|||||++.+++.+.+..  .-++++
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~   80 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN   80 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence            688999999999999999998876652  334444

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.41  E-value=5.6e-05  Score=57.36  Aligned_cols=27  Identities=22%  Similarity=0.172  Sum_probs=23.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLI   29 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~   29 (143)
                      ..+.|.||+|+|||||++.+++...+.
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~~~~~   72 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSKLHKK   72 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            468899999999999999999877553

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.40  E-value=8.7e-05  Score=55.86  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      -.++|+|++|+|||||++.|.|.-
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            368999999999999999999853

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.40  E-value=7.7e-05  Score=52.39  Aligned_cols=24  Identities=21%  Similarity=0.076  Sum_probs=20.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999988754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.40  E-value=7.5e-05  Score=55.33  Aligned_cols=24  Identities=33%  Similarity=0.628  Sum_probs=21.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..+.|.||+|+||||+++.+++..
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh
Confidence            468899999999999999998754

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.38  E-value=9.2e-05  Score=54.32  Aligned_cols=23  Identities=26%  Similarity=0.634  Sum_probs=20.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..+.|.|++||||||+.+.|+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            36889999999999999999864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.37  E-value=6.8e-05  Score=56.40  Aligned_cols=29  Identities=21%  Similarity=0.230  Sum_probs=23.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCce
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSN   32 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~   32 (143)
                      .+.|.||+|+|||||++.++..+......
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~   67 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYR   67 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHCCCE
Confidence            57899999999999999999876544333

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.35  E-value=0.0001  Score=50.85  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999988754

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.34  E-value=0.00011  Score=54.17  Aligned_cols=26  Identities=23%  Similarity=0.355  Sum_probs=22.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      ..++++|.+|+|||||++.|.|-...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~  125 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRAS  125 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccc
Confidence            36899999999999999999987643

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.34  E-value=9.8e-05  Score=52.18  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|+.|+|||||++.+++..
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            468999999999999998887653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=97.34  E-value=0.00011  Score=51.46  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhC
Confidence            367999999999999999988654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=97.34  E-value=8.1e-05  Score=51.21  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=20.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .+.++|+|+.|+|||||++.+.+
T Consensus        22 ~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           22 KIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            36799999999999999998864

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=97.33  E-value=0.00011  Score=51.92  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=21.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            478999999999999999988654

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.33  E-value=0.00013  Score=49.58  Aligned_cols=24  Identities=42%  Similarity=0.715  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..+.|.||.|+|||||++.++..+
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999988765

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.32  E-value=0.00012  Score=52.17  Aligned_cols=23  Identities=39%  Similarity=0.694  Sum_probs=20.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|+|+.||||||+.+.|+..+
T Consensus         7 ~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            7 NLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999997643

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.31  E-value=0.00013  Score=53.69  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++++|++|+|||||++.|.+-.
T Consensus        40 ~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           40 LTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999998754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.30  E-value=0.00012  Score=54.69  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|+.|||||||++.|.|.-
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCCC
Confidence            468999999999999999999874

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.30  E-value=0.00014  Score=53.30  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=21.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|+.|+|||||++.+.+-.
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999999854

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.29  E-value=0.00014  Score=51.95  Aligned_cols=22  Identities=36%  Similarity=0.658  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHhCCc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.|+||+||||+|..+.|+.-+
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999987543

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.29  E-value=0.00012  Score=58.61  Aligned_cols=24  Identities=33%  Similarity=0.652  Sum_probs=21.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++.|+||+|+|||||++.+++..
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            358899999999999999999854

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=97.29  E-value=5.7e-05  Score=52.51  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=5.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus        20 ~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           20 RCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEC-----------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            367999999999999999988765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.00014  Score=51.57  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            67899999999999999998764

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.27  E-value=0.00018  Score=51.26  Aligned_cols=27  Identities=41%  Similarity=0.373  Sum_probs=23.4

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      |...++|=|+-||||||+++.|...+.
T Consensus         1 M~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            1 MSAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             -CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            778899999999999999999987664

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.27  E-value=0.00013  Score=51.09  Aligned_cols=22  Identities=27%  Similarity=0.311  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +.++|+|+.|+|||||++.+.+
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHh
Confidence            6789999999999999977764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.27  E-value=0.00015  Score=51.36  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|+.|+|||||++-++.-.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            678999999999999998887643

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.27  E-value=0.00012  Score=54.05  Aligned_cols=24  Identities=17%  Similarity=0.142  Sum_probs=21.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|..|+|||||++.|.|..
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCCC
Confidence            468999999999999999999864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.26  E-value=0.00019  Score=51.72  Aligned_cols=22  Identities=45%  Similarity=0.674  Sum_probs=19.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.|+||+||||||..+.|+..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999988753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.26  E-value=0.00017  Score=51.88  Aligned_cols=24  Identities=33%  Similarity=0.677  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..+.|+|+.||||||+.+.|+..+
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            358899999999999999998644

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.26  E-value=0.00016  Score=51.20  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..++|.|++||||||+.+.|+..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~   26 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASE   26 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999764

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.24  E-value=0.00017  Score=51.90  Aligned_cols=21  Identities=29%  Similarity=0.333  Sum_probs=17.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHh
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~   23 (143)
                      ..+.|.||+||||||++..+.
T Consensus        77 ~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           77 SVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEeCCCCCcHHhHHHHH
Confidence            357899999999999887664

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.22  E-value=0.00022  Score=53.57  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=21.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ++.++|+|++|+|||||++.+.+-
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            578999999999999999997665

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.21  E-value=0.00014  Score=57.57  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=21.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..++|+|++|+|||||++.|.|-
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            57899999999999999999884

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=97.21  E-value=0.00017  Score=50.49  Aligned_cols=24  Identities=21%  Similarity=0.163  Sum_probs=20.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|+.|+|||||++.+.+-
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            367999999999999999988753

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.20  E-value=0.00024  Score=53.94  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+||+|||||||...|+..+
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCccCHHHHHHHHHHhC
Confidence            467899999999999999887543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.19  E-value=0.00022  Score=50.16  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|.||+|+|||||++.++..+
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999987654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=97.19  E-value=0.00013  Score=51.53  Aligned_cols=23  Identities=35%  Similarity=0.674  Sum_probs=19.9

Q ss_pred             eeeEEEECCCCCcHHHHHHH-HhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNG-MSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~-l~g   24 (143)
                      .+.++|+|+.|+|||||++. +.+
T Consensus        15 ~~ki~v~G~~~~GKSsli~~~~~~   38 (221)
T 3gj0_A           15 QFKLVLVGDGGTGKTTFVKRHLTG   38 (221)
T ss_dssp             EEEEEEEECTTSSHHHHHTTBHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999997 544

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.18  E-value=0.00016  Score=49.17  Aligned_cols=25  Identities=28%  Similarity=0.589  Sum_probs=21.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ..+.|.||+|+|||||++.++..+.
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHH
Confidence            3577999999999999999987653

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.16  E-value=0.00018  Score=56.85  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|.||+|+|||||++.|++.+
T Consensus       132 ~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999866

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.15  E-value=0.00023  Score=52.24  Aligned_cols=24  Identities=33%  Similarity=0.618  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..+.|.||+|+|||||++.++..+
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            357899999999999999998754

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.14  E-value=0.00025  Score=49.57  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=19.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +.++.|.|+||+|||||...+..
T Consensus        16 G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35788999999999999876654

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.14  E-value=0.00025  Score=53.78  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +.++.|.|+||+||||+...+.+
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHh
Confidence            35789999999999999988876

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.13  E-value=0.00031  Score=53.43  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|.||+|||||||...|+..+
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhC
Confidence            457899999999999999887654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.11  E-value=0.00029  Score=50.94  Aligned_cols=23  Identities=35%  Similarity=0.749  Sum_probs=20.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|.||+|+||||+.+.++..+
T Consensus        41 ~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999998744

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=97.11  E-value=6.1e-05  Score=52.45  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|+.|+|||||++.+.+-.
T Consensus        34 ~ki~vvG~~~~GKSsli~~l~~~~   57 (199)
T 3l0i_B           34 FKLLLIGDSGVGKSCLLLRFADDT   57 (199)
T ss_dssp             EEEEEECCTTSCCTTTTTSSBCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            679999999999999999887643

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.11  E-value=0.00028  Score=50.32  Aligned_cols=23  Identities=26%  Similarity=0.445  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..+.|+||+|+|||||...|+..
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46889999999999999888764

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.10  E-value=0.0011  Score=50.68  Aligned_cols=34  Identities=15%  Similarity=0.005  Sum_probs=25.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCS   36 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~   36 (143)
                      ..+.|.|++|+|||||+..++.......+.|.+.
T Consensus        47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f   80 (338)
T 4a1f_A           47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF   80 (338)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            4578999999999999988876554444555443

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.10  E-value=0.00022  Score=55.80  Aligned_cols=26  Identities=23%  Similarity=0.443  Sum_probs=22.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      +..++|+||+|+|||||++.|++...
T Consensus       174 GQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          174 GQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             CcEEEEecCCCCChhHHHHHHHHHHh
Confidence            35689999999999999999998763

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.09  E-value=0.00027  Score=55.44  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=20.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..+.|+|++||||||+.+.|+..
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999998754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.07  E-value=0.00029  Score=53.96  Aligned_cols=25  Identities=28%  Similarity=0.437  Sum_probs=21.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|+.|+|||||+..|+..+
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999987655

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.07  E-value=0.00024  Score=55.86  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=21.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ...++|+|++|+|||||++.|.|-
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            367999999999999999999885

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.06  E-value=0.00038  Score=49.84  Aligned_cols=27  Identities=26%  Similarity=0.301  Sum_probs=22.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      +..++|-|++||||||+++.|...+..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            356889999999999999999776653

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.06  E-value=0.00044  Score=52.97  Aligned_cols=24  Identities=21%  Similarity=0.384  Sum_probs=21.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+||+|||||||...|+..+
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            368999999999999999998765

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=97.05  E-value=0.00036  Score=50.02  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |++||.|.-||||||+.+.+..
T Consensus        10 ~~iglTGgigsGKStv~~~l~~   31 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA   31 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999975

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=97.04  E-value=0.00031  Score=54.90  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=20.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|.+++|||||++.|.+-.
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Confidence            368999999999999999998864

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.04  E-value=0.00028  Score=53.12  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=21.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      .+.|.||+|+||||+++.+++.+.
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            378999999999999999988753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.03  E-value=0.00036  Score=50.71  Aligned_cols=21  Identities=33%  Similarity=0.602  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 032336            5 QVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ++|+||.||||||+.+.|+..
T Consensus        11 ~~~~G~pGsGKsT~a~~L~~~   31 (230)
T 3gmt_A           11 LILLGAPGAGKGTQANFIKEK   31 (230)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             eeeECCCCCCHHHHHHHHHHH
Confidence            689999999999999988653

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.01  E-value=0.00047  Score=45.97  Aligned_cols=29  Identities=24%  Similarity=0.327  Sum_probs=23.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCce
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSN   32 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~   32 (143)
                      .+.|.||+|+|||++.+.|........+.
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~   54 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFGRNAQGE   54 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence            47799999999999999998765443333

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=96.08  E-value=0.0001  Score=51.46  Aligned_cols=22  Identities=27%  Similarity=0.311  Sum_probs=19.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +.++|+|+.|+|||||++.+.+
T Consensus        31 ~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           31 IKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            5789999999999999977764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.99  E-value=0.00038  Score=55.16  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=26.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      ..+.++|++|+||||++..|+..+....-.|.+
T Consensus       101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll  133 (443)
T 3dm5_A          101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV  133 (443)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            468899999999999999998877655445544

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.99  E-value=0.00031  Score=50.90  Aligned_cols=25  Identities=28%  Similarity=0.127  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ..++|.|++||||||+++.|...+.
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4588999999999999999987664

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.98  E-value=0.00043  Score=48.11  Aligned_cols=23  Identities=35%  Similarity=0.596  Sum_probs=20.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|.||.|+|||||++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999987653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=96.97  E-value=0.00035  Score=55.60  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|++|+|||||++.+.+-
T Consensus       225 ~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          225 LKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            56999999999999999999874

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.97  E-value=0.00016  Score=57.06  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=26.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      ..++|+|++|+||||++..|++.+......|.+
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVll  132 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPAL  132 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            368899999999999999999887654445554

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.97  E-value=0.0026  Score=50.14  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=55.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCc-eEEEcceeehhhhccccHHHHHhh-cch---hcccccccccccCChhhHH
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGS-NICCSNVFYLQAVHNSACRKLTKE-LCD---VIEDYSLVNFSTLDIQDKE   77 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~-ig~---V~Q~~~l~~~~~~~~~~~~   77 (143)
                      ..+.|.|++|+|||||+..++.......| .|.+...       ..+..++..+ ++.   +..+ .+ .......++..
T Consensus       201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl-------E~~~~~l~~R~~~~~~~i~~~-~l-~~g~l~~~~~~  271 (444)
T 2q6t_A          201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL-------EMPAAQLTLRMMCSEARIDMN-RV-RLGQLTDRDFS  271 (444)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES-------SSCHHHHHHHHHHHHTTCCTT-TC-CGGGCCHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC-------CCCHHHHHHHHHHHHcCCCHH-HH-hCCCCCHHHHH
Confidence            45789999999999998887765443223 3443221       1222333322 111   1111 11 11223445555


Q ss_pred             HHHHHHHHhhhhCCCcC-C--chhHHHHHHHHHHh--hcCCcccccCCc
Q 032336           78 SVAKLVKLIDKSNGYIF-A--GMDASAVEFSKIAV--RNVDWDYYRYPS  121 (143)
Q Consensus        78 ~~~~~l~~l~~~~~~~l-S--gGe~qrv~ia~al~--~~p~~llld~~~  121 (143)
                      .+.++++.+....-+.. .  ..-.+..+.++.+.  .++++++.||..
T Consensus       272 ~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~  320 (444)
T 2q6t_A          272 RLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQ  320 (444)
T ss_dssp             HHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGG
T ss_pred             HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChh
Confidence            56666665542221211 1  11223344555555  479999999764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.97  E-value=0.00046  Score=49.76  Aligned_cols=24  Identities=17%  Similarity=0.212  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|-|+.||||||+.+.|+..+
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHc
Confidence            468899999999999999998654

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.96  E-value=0.00043  Score=50.38  Aligned_cols=26  Identities=27%  Similarity=0.201  Sum_probs=22.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      ..++|.|++||||||+++.|...+..
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46889999999999999999876644

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.96  E-value=0.00019  Score=52.30  Aligned_cols=22  Identities=36%  Similarity=0.792  Sum_probs=19.4

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.|.||+|+|||||++.++..
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4678999999999999999864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.96  E-value=0.00032  Score=51.30  Aligned_cols=24  Identities=25%  Similarity=0.308  Sum_probs=21.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|.|+.||||||+.+.|+..+
T Consensus        25 ~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           25 KKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            468899999999999999988765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.91  E-value=0.00062  Score=50.71  Aligned_cols=24  Identities=29%  Similarity=0.477  Sum_probs=21.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|.+|+|||||++.|.|-.
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEecCCCchHHHHHHHhcCc
Confidence            358999999999999999999865

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.90  E-value=0.00052  Score=49.14  Aligned_cols=27  Identities=33%  Similarity=0.233  Sum_probs=23.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      +..+++-|++||||||+++.|...+..
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~   29 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQ   29 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            356889999999999999999877654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.89  E-value=0.00063  Score=49.78  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=20.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..+.|.||+|+|||||.+.++..
T Consensus        65 ~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           65 VSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            45779999999999999999764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.88  E-value=0.00052  Score=51.17  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=20.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ++.|.||+|+|||+|.+.|+..+
T Consensus        38 ~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           38 ILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46677999999999999998765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=96.86  E-value=0.00068  Score=54.59  Aligned_cols=25  Identities=20%  Similarity=0.123  Sum_probs=21.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|..|+|||||++.+.+-.
T Consensus        41 ~~kV~lvG~~~vGKSSLl~~l~~~~   65 (535)
T 3dpu_A           41 EIKVHLIGDGMAGKTSLLKQLIGET   65 (535)
T ss_dssp             EEEEEEESSSCSSHHHHHHHHHC--
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC
Confidence            3689999999999999999998754

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=96.86  E-value=0.00049  Score=55.00  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=19.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|++|+|||||++.+.+-
T Consensus       234 ~kV~ivG~~nvGKSSLln~L~~~  256 (476)
T 3gee_A          234 VSTVIAGKPNAGKSTLLNTLLGQ  256 (476)
T ss_dssp             EEEEEECCTTSSHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56999999999999999999886

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.85  E-value=0.00043  Score=52.95  Aligned_cols=24  Identities=17%  Similarity=0.142  Sum_probs=21.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|..|+|||||++.|.|.-
T Consensus        32 ~~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           32 PQIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             CEEEEECBTTSSHHHHHHTTTTSC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.82  E-value=0.00066  Score=51.30  Aligned_cols=24  Identities=29%  Similarity=0.623  Sum_probs=21.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++.|.||+|+|||||.+.++...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             ceEEEECCCCccHHHHHHHHHHHc
Confidence            468899999999999999998754

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.82  E-value=0.00053  Score=51.96  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      .+.|.||+|+|||||++.+.....
T Consensus        46 ~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           46 NALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999987653

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=96.82  E-value=0.00082  Score=48.06  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~   23 (143)
                      .|+++|+|.+|+|||||++-+.
T Consensus        13 ~~KivlvGd~~VGKTsLi~r~~   34 (216)
T 4dkx_A           13 KFKLVFLGEQSVGKTSLITRFM   34 (216)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEEECcCCcCHHHHHHHHH
Confidence            3889999999999999997664

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.81  E-value=0.00089  Score=48.35  Aligned_cols=26  Identities=35%  Similarity=0.362  Sum_probs=22.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      ..++|.|++||||||+.+.|...+..
T Consensus        22 ~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           22 MFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            46889999999999999999876654

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.81  E-value=0.00051  Score=54.44  Aligned_cols=25  Identities=32%  Similarity=0.720  Sum_probs=22.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCccc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      .+.|.||+|+|||||.+.|+.....
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~~~~~   76 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIARYANA   76 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCC
Confidence            5789999999999999999987644

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.81  E-value=0.00065  Score=50.37  Aligned_cols=23  Identities=39%  Similarity=0.551  Sum_probs=20.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|.||+|+||||+.+.++..+
T Consensus        69 ~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           69 HMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999998877665

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.81  E-value=0.00066  Score=48.75  Aligned_cols=27  Identities=30%  Similarity=0.228  Sum_probs=23.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      +..+++-|+.||||||+++.|...+..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            356889999999999999999887765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=96.80  E-value=0.00079  Score=49.09  Aligned_cols=22  Identities=32%  Similarity=0.694  Sum_probs=20.8

Q ss_pred             eeEEEECCC---------CCcHHHHHHHHhC
Q 032336            3 FGQVVIGPP---------GSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpn---------GaGKSTLl~~l~g   24 (143)
                      +.++|+|.+         |+|||||++.+.+
T Consensus        20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             EEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             eEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            689999999         9999999999987

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.80  E-value=0.00071  Score=49.92  Aligned_cols=23  Identities=30%  Similarity=0.628  Sum_probs=20.3

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|.||+|+||||+.+.++..+
T Consensus        52 ~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           52 NILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=96.79  E-value=0.00078  Score=56.16  Aligned_cols=25  Identities=32%  Similarity=0.438  Sum_probs=22.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++|+|+.|+|||||++.|.|.-
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~~   93 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGEN   93 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3679999999999999999999863

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=96.78  E-value=0.00062  Score=51.67  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++.+.+-
T Consensus       166 ~kI~ivG~~~vGKSsLl~~l~~~  188 (329)
T 3o47_A          166 MRILMVGLDAAGKTTILYKLKLG  188 (329)
T ss_dssp             EEEEEEESTTSSHHHHHHHTCSS
T ss_pred             ceEEEECCCCccHHHHHHHHhCC
Confidence            47999999999999999988764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=96.78  E-value=0.00076  Score=52.48  Aligned_cols=24  Identities=25%  Similarity=0.345  Sum_probs=21.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++++|+.|+|||||++.|.+..
T Consensus         9 ~~I~vvG~~~~GKSTLi~~L~~~~   32 (403)
T 3sjy_A            9 VNIGVVGHVDHGKTTLVQAITGIW   32 (403)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcc
Confidence            578999999999999999999853

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.77  E-value=0.00075  Score=52.92  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=20.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|.||+|||||||...|+..+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            357899999999999998887543

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.77  E-value=0.00039  Score=55.48  Aligned_cols=33  Identities=18%  Similarity=0.159  Sum_probs=25.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      ..++|+||+|+|||||++.|+.......+.+.+
T Consensus       152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V  184 (473)
T 1sky_E          152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV  184 (473)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             CEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence            357899999999999999988765544455543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.77  E-value=0.00078  Score=50.73  Aligned_cols=24  Identities=29%  Similarity=0.605  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++.|.||+|+|||||.+.++...
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            357899999999999999998753

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.76  E-value=0.00077  Score=51.51  Aligned_cols=24  Identities=38%  Similarity=0.682  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..+.|.||+|+||||+.+.|+..+
T Consensus        52 ~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           52 SNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            358899999999999999998765

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.75  E-value=0.00074  Score=51.26  Aligned_cols=34  Identities=29%  Similarity=0.387  Sum_probs=25.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCS   36 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~   36 (143)
                      ..+.|.||+|+||||+.+.++..+......+.+.
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~  104 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA  104 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence            3688999999999999999998765433333333

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.73  E-value=0.00088  Score=51.27  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..+.|.||+|+|||||++.++...
T Consensus       118 ~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          118 KGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHc
Confidence            357899999999999999998754

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.73  E-value=0.00098  Score=50.86  Aligned_cols=23  Identities=17%  Similarity=0.102  Sum_probs=20.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..+.|.||+|||||||+..++..
T Consensus       123 ~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          123 AITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999888764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.70  E-value=0.0014  Score=47.65  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCccc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      .+.|.||+|+|||++.+.|......
T Consensus        31 ~vll~G~~GtGKt~la~~i~~~~~~   55 (265)
T 2bjv_A           31 PVLIIGERGTGKELIASRLHYLSSR   55 (265)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred             CEEEECCCCCcHHHHHHHHHHhcCc
Confidence            5779999999999999999877643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.69  E-value=0.001  Score=52.22  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|.+|+|||||++.+.+-.
T Consensus       176 ~ki~lvG~~nvGKSSLin~l~~~~  199 (436)
T 2hjg_A          176 IQFCLIGRPNVGKSSLVNAMLGEE  199 (436)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTST
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCCC
Confidence            578999999999999999998864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.00087  Score=52.89  Aligned_cols=24  Identities=33%  Similarity=0.653  Sum_probs=21.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++.|.||+|+|||+|.+.+++..
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~~  230 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANST  230 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999854

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=96.68  E-value=0.00065  Score=52.02  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=19.9

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .++|+|.+++|||||++.+++-
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eeeeeCCCCCCHHHHHHHHHcC
Confidence            4889999999999999999864

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.66  E-value=0.00097  Score=51.06  Aligned_cols=24  Identities=29%  Similarity=0.605  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++.|.||+|+|||||.+.++..+
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHh
Confidence            358899999999999999998754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.65  E-value=0.0012  Score=52.36  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..+.++|.+||||||+.+.|+..+
T Consensus        40 ~~IvlvGlpGsGKSTia~~La~~l   63 (469)
T 1bif_A           40 TLIVMVGLPARGKTYISKKLTRYL   63 (469)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999988654

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.65  E-value=0.00079  Score=53.36  Aligned_cols=26  Identities=27%  Similarity=0.510  Sum_probs=22.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      ..+.|+||+|+||||+.+.|+..+..
T Consensus        51 ~~iLl~GppGtGKT~lar~lA~~l~~   76 (444)
T 1g41_A           51 KNILMIGPTGVGKTEIARRLAKLANA   76 (444)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            35789999999999999999987754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.64  E-value=0.0011  Score=51.09  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHh
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~   23 (143)
                      ..+.|+|.+||||||++|-|-
T Consensus        34 ~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           34 VKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHH
Confidence            467899999999999999884

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.64  E-value=0.001  Score=49.96  Aligned_cols=23  Identities=39%  Similarity=0.469  Sum_probs=20.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|.||+|+||||+++.++...
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            57899999999999999997653

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.63  E-value=0.00069  Score=45.06  Aligned_cols=24  Identities=17%  Similarity=0.051  Sum_probs=20.8

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      .+.|.||+|+|||++.+.|.....
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             cEEEECCCCccHHHHHHHHHHhCC
Confidence            477999999999999999987654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.63  E-value=0.0011  Score=49.77  Aligned_cols=25  Identities=32%  Similarity=0.361  Sum_probs=21.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ..+.|.||+|+|||+|+++|+....
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999987654

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=96.62  E-value=0.00091  Score=54.32  Aligned_cols=24  Identities=21%  Similarity=0.173  Sum_probs=21.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|..|+|||||++.|.|.-
T Consensus        66 ~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc
Confidence            478999999999999999999864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.61  E-value=0.0014  Score=47.36  Aligned_cols=26  Identities=35%  Similarity=0.561  Sum_probs=21.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ...++++|..|+||||++..|+..+.
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            35688999999999999999985544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	3e-05
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	5e-05
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	1e-04
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	2e-04
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	2e-04
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	5e-04
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	0.001
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	0.001
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	0.002
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	0.002
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	0.002
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	0.003
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	0.003
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	0.004
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	0.004

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (91), Expect = 3e-05
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 6  VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65
          V+IGPPG+GK T    + +       ++   ++   Q    +      K++ D     S 
Sbjct: 6  VLIGPPGAGKGTQAPNLQERFHAA--HLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 63

Query: 66 VNFSTLDIQDKESVAKLVKLIDKSNGYIFAGM 97
               +   +      L       NG+I  G 
Sbjct: 64 DIMVNMIKDE------LTNNPACKNGFILDGF 89

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 5e-05
 Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 6  VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65
           V+G PG+GK T C  + +       ++    +  L+    +   +  + +   I++  +
Sbjct: 5  FVLGGPGAGKGTQCARIVEKYGYT--HLSAGEL--LRDERKNPDSQYGELIEKYIKEGKI 60

Query: 66 VNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMD 98
          V         K  + + +    + N ++  G  
Sbjct: 61 VPVEITISLLKREMDQTMAANAQKNKFLIDGFP 93

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 9/121 (7%)

Query: 6   VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65
           V++G PG+GK T  + + +       +I   ++F       +       EL    + +  
Sbjct: 4   VLMGLPGAGKGTQADRIVEKYGTP--HISTGDMFRAAIQEGT-------ELGVKAKSFMD 54

Query: 66  VNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLF 125
                 D      V + +   D  NG++  G   +  +   +     D         ++ 
Sbjct: 55  QGALVPDEVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQ 114

Query: 126 Q 126
            
Sbjct: 115 V 115

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 6  VVIGPPGSGKTTYCNGMSQFLSLIG 30
          V +G  GSGKTT      ++L    
Sbjct: 4  VFVGTAGSGKTTLTGEFGRYLEDNY 28

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 6  VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65
           V+G PG+GK T C  + +  S     +  S    L+A    A  +  + + + I++  +
Sbjct: 12 FVLGGPGAGKGTQCEKLVKDYSF----VHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQI 67

Query: 66 VNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMD 98
          V         +   A    +    + ++  G  
Sbjct: 68 VPQEITLALLRN--AISDNVKANKHKFLIDGFP 98

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 36.4 bits (83), Expect = 5e-04
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6  VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKE 55
           ++G PGSGK T  + +++   L   ++   ++     +  +    L K 
Sbjct: 10 AIMGAPGSGKGTVSSRITKHFELK--HLSSGDLLRDNMLRGTEIGVLAKT 57

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 6   VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65
           ++ G P SGK T C  +     L   +I   ++        +A  +  K   + +E   L
Sbjct: 7   MISGAPASGKGTQCELIKTKYQLA--HISAGDLLR---AEIAAGSENGKRAKEFMEKGQL 61

Query: 66  VNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFH 123
           V     +I       +L +   + NG++  G   S  +   +    +  D +      
Sbjct: 62  VPD---EIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVP 116

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 6  VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCD 58
          +++G P +GK T    + +   +    I   ++        S   K  K++ D
Sbjct: 4  ILLGAPVAGKGTQAQFIMEKYGIP--QISTGDMLRAAVKSGSELGKQAKDIMD 54

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 6  VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65
          V++G PG+GK T    +     +   +I   ++F       +    L  +    ++   L
Sbjct: 4  VLMGLPGAGKGTQAEKIVAAYGIP--HISTGDMFRAAMKEGT---PLGLQAKQYMDRGDL 58

Query: 66 VNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMD 98
          V     D      V + +   D  NG++  G  
Sbjct: 59 VP----DEVTIGIVRERLSKDDCQNGFLLDGFP 87

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.5 bits (78), Expect = 0.002
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 6  VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65
          +++GPPG+GK T    +++ L +    I    +F               +L    + Y  
Sbjct: 4  LLLGPPGAGKGTQAVKLAEKLGIP--QISTGELFRRNIEEG-------TKLGVEAKRYLD 54

Query: 66 VNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMD 98
                     E V   +   D +NG+I  G  
Sbjct: 55 AGDLVPSDLTNELVDDRLNNPDAANGFILDGYP 87

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 6  VVIGPPGSGKTTYCNGMSQFLSLIGSNICC 35
          V++G  GSGK+   + ++  L     +   
Sbjct: 10 VLMGVSGSGKSAVASEVAHQLHAAFLDGDF 39

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 33.8 bits (76), Expect = 0.003
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 6  VVIGPPGSGKTTYCNGMSQFLSLIGSNI 33
          +V G PG GK+T    + + L   G N 
Sbjct: 5  IVTGIPGVGKSTVLAKVKEILDNQGINN 32

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 33.8 bits (76), Expect = 0.003
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 6  VVIGPPGSGKTTYCNGMSQFLSLI 29
          V++GPPG+GK T    +++   + 
Sbjct: 7  VLLGPPGAGKGTQAPKLAKNFCVC 30

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 33.8 bits (76), Expect = 0.004
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 6  VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65
           V+G PGSGK T C  + Q       ++   ++        S+     K L +++E   L
Sbjct: 12 FVVGGPGSGKGTQCEKIVQKYGYT--HLSTGDLL---RAEVSSGSARGKMLSEIMEKGQL 66

Query: 66 VNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMD 98
          V     +         +V  +D S G++  G  
Sbjct: 67 VPL---ETVLDMLRDAMVAKVDTSKGFLIDGYP 96

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 33.4 bits (75), Expect = 0.004
 Identities = 17/120 (14%), Positives = 29/120 (24%), Gaps = 6/120 (5%)

Query: 6   VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65
           VV G PG G TT        L   G N     V +   +   A  +      D +     
Sbjct: 5   VVTGVPGVGSTTSSQLAMDNLRKEGVNYKM--VSFGSVMFEVAKEENLVSDRDQMRKMDP 62

Query: 66  VNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLF 125
                +       +A++     K +          +     +            P   + 
Sbjct: 63  ETQKRIQKMAGRKIAEM----AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIV 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.97
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.97
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.96
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.57
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.25
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.41
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.32
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.26
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.21
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.2
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.18
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.17
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.11
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.11
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.1
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.1
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.08
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	98.07
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.05
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.05
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.04
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.04
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.03
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.03
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.02
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.01
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.0
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.0
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.99
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.95
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.93
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.91
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.91
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.89
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.88
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.88
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.88
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.87
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.87
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.86
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.86
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.86
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.85
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.85
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.84
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.84
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.83
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.83
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.83
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.83
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.82
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.81
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.81
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.8
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.8
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.79
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.79
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.78
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.77
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.76
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.76
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.76
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.75
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.74
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.74
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.73
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.71
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.7
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.7
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.69
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.69
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.69
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.68
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.68
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.67
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.67
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.66
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.66
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.65
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.64
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.64
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.6
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.6
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.6
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.59
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.58
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.57
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.57
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.57
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.57
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.56
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.55
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.54
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.54
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.53
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.53
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.52
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.52
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	97.51
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.51
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.49
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.49
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.48
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.46
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.45
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.44
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.43
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.43
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.42
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.41
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.41
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.4
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.39
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.38
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.38
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.38
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.37
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.37
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.37
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.34
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.34
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.34
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.33
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.29
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.29
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.29
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.29
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	97.27
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.26
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.26
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.26
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.26
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.25
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	97.25
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.25
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.24
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.22
d1okkd2	207	GTPase domain of the signal recognition particle r	97.21
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.2
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.18
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.18
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.16
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.16
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.15
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.15
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.14
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.12
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.12
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.1
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	97.09
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.09
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.09
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.08
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.08
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.05
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.05
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.03
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.03
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.01
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.98
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.98
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.97
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.94
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.93
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.93
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.87
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.86
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.86
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.84
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.83
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.81
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.71
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.69
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.68
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	96.65
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.62
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.61
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	96.52
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.49
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.48
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.44
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.36
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.34
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.3
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	96.28
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.28
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.26
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.25
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	96.23
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.23
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.19
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.14
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	96.07
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.05
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.0
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.95
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.95
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.93
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.92
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.91
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.88
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.79
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.76
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.76
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.71
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.68
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.65
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.61
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.56
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.4
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.4
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.36
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.32
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.23
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.13
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	94.96
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.77
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	94.74
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.71
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.52
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	94.48
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.46
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.41
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	94.34
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	94.12
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.11
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.66
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	93.53
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	93.39
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.35
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.33
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.76
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	92.7
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	92.52
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	92.42
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	92.36
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	92.28
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.11
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.04
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	91.67
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	91.49
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	91.26
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.25
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.11
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	91.01
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.73
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	90.48
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.48
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	89.43
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	88.41
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	87.2
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	86.69
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	86.27
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	83.3
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	83.26

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4e-39  Score=235.71  Aligned_cols=131  Identities=15%  Similarity=0.141  Sum_probs=107.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      ++.++|+||||||||||+++|+|+.+|++|+|.++|+++. .........+|+.+|||||++.+++..+           
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~-~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~  109 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT-TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL  109 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEEC-TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEee-eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHH
Confidence            4689999999999999999999999999999999998543 2233334456778999999998874322           


Q ss_pred             --C-ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 --L-DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 --~-~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                        . ..+..+++.++|+.+++.   +.++  +||||||||+|||||+.+|++||+|   |||+.||...+..++
T Consensus       110 ~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllD---EPt~~LD~~~~~~i~  180 (240)
T d3dhwc1         110 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD---EATSALDPATTRSIL  180 (240)
T ss_dssp             TTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEE---SGGGSSCHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEec---cccccCCHHHhhHHH
Confidence              2 234457889999999874   4444  7999999999999999999999999   999999998887554

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=8.7e-39  Score=232.70  Aligned_cols=128  Identities=16%  Similarity=0.153  Sum_probs=101.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH---HH-Hhhcchhccccccccccc-------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR---KL-TKELCDVIEDYSLVNFST-------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~---~~-~~~ig~V~Q~~~l~~~~~-------   70 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|+++|+++    ...+.+   .+ ++.||||||++.+++..+       
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i----~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~  106 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT----NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL  106 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC----TTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred             CCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEc----CcCChhhcchhhcceEEEEecchhhCcCccHHHHHhH
Confidence            467999999999999999999999999999999999743    333333   23 456999999998774322       


Q ss_pred             ---------CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336           71 ---------LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        71 ---------~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                               .. .+..+.+.++++.+++.    +.++  +||||||||+|||||+.+|++|++|   |||+.||..++..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllD---EPTs~LD~~~~~~  183 (230)
T d1l2ta_         107 PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILAD---QPTGALDSKTGEK  183 (230)
T ss_dssp             HHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCHHHHHH
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEec---CCccccCHHHHHH
Confidence                     11 12345667777777753    4444  7999999999999999999999999   9999999998875


Q ss_pred             cc
Q 032336          135 YI  136 (143)
Q Consensus       135 ~~  136 (143)
                      ++
T Consensus       184 i~  185 (230)
T d1l2ta_         184 IM  185 (230)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=5.2e-39  Score=235.10  Aligned_cols=131  Identities=14%  Similarity=0.168  Sum_probs=106.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|+++|+.+.. .........++++|||||++.+|+..+           
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~-~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~  109 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS-NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN  109 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEE-TTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeec-CchhhcchhhccceEEeccccccccccHHHHhhhhhHh
Confidence            46799999999999999999999999999999999985532 122223345677999999998875432           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                        .. .+..+++.++++.+++.   +.++  +||||||||+|||||+.+|++||+|   ||++.+|...+..++
T Consensus       110 ~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllD---EPt~~LD~~~~~~i~  180 (242)
T d1oxxk2         110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD---EPFSNLDARMRDSAR  180 (242)
T ss_dssp             SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCGGGHHHHH
T ss_pred             hcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeec---CCccCCCHHHHHHHH
Confidence              12 23457789999999873   5555  7999999999999999999999999   999999998877543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.5e-38  Score=232.57  Aligned_cols=132  Identities=16%  Similarity=0.157  Sum_probs=105.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      ++.++|+||||||||||+|+|+|+++|++|+|+++|..+...-........++.||||||++.+|+..+           
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~  108 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL  108 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHH
Confidence            467999999999999999999999999999999999754311111112234567999999999885432           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                        .. .+..+++.++++.+++.   +.++  +||||||||+|||||+.+|++|++|   |||+.+|...+..+.
T Consensus       109 ~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllD---EPt~~LD~~~~~~i~  179 (240)
T d1g2912         109 RKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD---EPLSNLDAKLRVRMR  179 (240)
T ss_dssp             TTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEE---CTTTTSCHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCCcccCHHHHHHHH
Confidence              12 23456789999998764   5555  7999999999999999999999999   999999998877543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2e-38  Score=231.71  Aligned_cols=125  Identities=18%  Similarity=0.122  Sum_probs=98.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      ++.++|+||||||||||+|+|+|+++|++|+|.++|+++    ...+.  .+++||||||++.+|+..+           
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i----~~~~~--~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~  105 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV----TYLPP--KDRNISMVFQSYAVWPHMTVYENIAFPLKI  105 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSCG--GGGTEEEEEC------CCCHHHHHHTTCC-
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceec----ccCCc--ccceEEEEeechhhcccchHHHHHHHHHHH
Confidence            467899999999999999999999999999999999744    33332  2467999999999875432           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .. .+..+++.++++.+++.   ++++  +||||||||+|||||+.+|++|++|   |||+.+|...+..+
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllD---EPts~LD~~~~~~i  175 (239)
T d1v43a3         106 KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD---EPLSNLDAKLRVAM  175 (239)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE---STTTTSCHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeec---CCcccCCHHHHHHH
Confidence              12 24457788999999874   5555  7999999999999999999999999   99999999887754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.7e-38  Score=231.97  Aligned_cols=124  Identities=12%  Similarity=0.114  Sum_probs=102.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------C
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------L   71 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------~   71 (143)
                      +.++|+||||||||||+|+|+|+++|++|+|.++|.++    ...+.  .++.||||||++.+|++.+           .
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i----~~~~~--~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~   98 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI----TPLPP--ERRGIGFVPQDYALFPHLSVYRNIAYGLRNV   98 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSCT--TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC----CcCCH--HHcCceeeccchhhcccchhhHhhhhhhccc
Confidence            46899999999999999999999999999999999854    33332  2567999999998886432           1


Q ss_pred             Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      .+ +..+++.++++.+++.   +.++  +||||||||+|||||+++|++|++|   ||++.+|...+..+
T Consensus        99 ~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlD---EPts~LD~~~~~~i  165 (240)
T d2onka1          99 ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD---EPLSAVDLKTKGVL  165 (240)
T ss_dssp             CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE---STTSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEec---CccccCCHHHHHHH
Confidence            22 3346789999998874   4554  7999999999999999999999999   99999999887654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=2.1e-38  Score=230.26  Aligned_cols=126  Identities=18%  Similarity=0.163  Sum_probs=103.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      ++.++|+||||||||||+|+|+|+++|++|+|.++|+++    ...+.  .++.+|||||++.+|++.++          
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i----~~~~~--~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~   99 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV----TDLSP--EKHDIAFVYQNYSLFPHMNVKKNLEFGMRM   99 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEEC----TTSCH--HHHTCEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEec----cccch--hHhcceeeccccccCccccHHHHHHHHHhh
Confidence            467999999999999999999999999999999999743    33333  35689999999998865432          


Q ss_pred             -ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           72 -DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        72 -~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                       ...+.+++.++++.+++.   ++++  +||||||||+|||||+++|++||+|   |||+.+|...+..+.
T Consensus       100 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllD---EPts~LD~~~~~~i~  167 (229)
T d3d31a2         100 KKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD---EPLSALDPRTQENAR  167 (229)
T ss_dssp             HCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE---SSSTTSCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeec---CCCcCCCHHHHHHHH
Confidence             123346788889988763   4444  7999999999999999999999999   999999998877543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-38  Score=231.60  Aligned_cols=125  Identities=13%  Similarity=0.143  Sum_probs=87.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------   71 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------   71 (143)
                      ++.++|+||||||||||+|+|+|+++|++|+|.++|+.+    ...+.  .++.||||||++.+++..++          
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i----~~~~~--~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~   99 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM----NDTPP--AERGVGMVFQSYALYPHLSVAENMSFGLKL   99 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCC----TTSCG--GGTCEEEECSSCCC----------------
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEC----CCCch--hhceeeeeccccccccchhHHHHHHHHHHH
Confidence            467999999999999999999999999999999999743    33332  34679999999988754321          


Q ss_pred             ----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           72 ----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        72 ----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                          ..+..+++.++++.+++.   ++++  +||||||||+|||||+.+|++|++|   ||++.+|...+..+
T Consensus       100 ~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlD---EPts~LD~~~~~~i  169 (232)
T d2awna2         100 AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD---EPLSNLDAALRVQM  169 (232)
T ss_dssp             -----CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEE---STTTTSCHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHH
Confidence                124456789999998874   4444  7999999999999999999999999   99999999887754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=6.1e-36  Score=221.17  Aligned_cols=132  Identities=17%  Similarity=0.145  Sum_probs=105.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhh---------ccccHHHHHhhcchhccccccccccc--
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAV---------HNSACRKLTKELCDVIEDYSLVNFST--   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~---------~~~~~~~~~~~ig~V~Q~~~l~~~~~--   70 (143)
                      ++.++|+||||||||||+++|+|+++|++|+|.++|+.+....         .......+++++|||||++.+++..+  
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~  107 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVL  107 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcc
Confidence            4689999999999999999999999999999999998543110         11223457788999999998774322  


Q ss_pred             ------------CC-hhhHHHHHHHHHHhhh----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336           71 ------------LD-IQDKESVAKLVKLIDK----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV  131 (143)
Q Consensus        71 ------------~~-~~~~~~~~~~l~~l~~----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~  131 (143)
                                  .. .+..+++.++++.+++    .++++  +||||||||+|||||+.+|++|++|   |||+.+|...
T Consensus       108 env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilD---EPT~gLD~~~  184 (258)
T d1b0ua_         108 ENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFD---EPTSALDPEL  184 (258)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEE---STTTTSCHHH
T ss_pred             hhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEec---cccccCCHHH
Confidence                        11 2345678888888876    24444  7999999999999999999999999   9999999988


Q ss_pred             hhhcc
Q 032336          132 QEKYI  136 (143)
Q Consensus       132 ~~~~~  136 (143)
                      +..+.
T Consensus       185 ~~~i~  189 (258)
T d1b0ua_         185 VGEVL  189 (258)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87553

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=3.6e-35  Score=215.13  Aligned_cols=128  Identities=12%  Similarity=0.055  Sum_probs=99.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhccccccccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYSLVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~~~~~----------   70 (143)
                      ++.++|+||||||||||+|+|+|+++|++|+|.++|+    ++...+...++ ..++|+||++.+|+..+          
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~----~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~  107 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ----DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY  107 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE----ECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccc----ccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHH
Confidence            4679999999999999999999999999999999997    44444444443 34889999988774322          


Q ss_pred             ---CChhhHHHHHHHHHHh-hh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 ---LDIQDKESVAKLVKLI-DK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 ---~~~~~~~~~~~~l~~l-~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                         ......+.++++++.+ ++   .++++  +||||||||+|||||+++|++|++|   ||++.+|...+..+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllD---EPt~gLD~~~~~~i~  179 (240)
T d1ji0a_         108 NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD---EPSLGLAPILVSEVF  179 (240)
T ss_dssp             TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE---CTTTTCCHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeec---CCCcCCCHHHHHHHH
Confidence               1122233455555554 33   34443  7999999999999999999999999   999999998877543

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2e-35  Score=217.92  Aligned_cols=128  Identities=14%  Similarity=0.174  Sum_probs=101.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--------ccCCh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--------STLDI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--------~~~~~   73 (143)
                      +..+||+||||||||||+++|+|+++|++|+|+++|.    ++...+...+++.++||+|++.+|..        .....
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~----~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~  116 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGH----DLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEE  116 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTE----ETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCc----ccchhhhhhhhheEEEEeeccccCCcchhhhhhhcCccc
Confidence            4679999999999999999999999999999999997    56677888899999999999988731        11111


Q ss_pred             hhHHHHHHHHHHhh-----------hh-----CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           74 QDKESVAKLVKLID-----------KS-----NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        74 ~~~~~~~~~l~~l~-----------~~-----~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .+.+.+.++++..+           +.     ....+||||||||+|||||+.+|++|++|   |||+.+|..++..++
T Consensus       117 ~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililD---Epts~LD~~~~~~i~  192 (253)
T d3b60a1         117 YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILD---EATSALDTESERAIQ  192 (253)
T ss_dssp             CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEE---TTTSSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEec---cccccCCHHHHHHHH
Confidence            22233444443322           11     12337999999999999999999999999   999999998877554

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=6.1e-36  Score=219.46  Aligned_cols=128  Identities=15%  Similarity=0.119  Sum_probs=99.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c---CCh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T---LDI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~---~~~   73 (143)
                      +..+||+||||||||||+++|+|+++|++|+|.++|.    ++...+.+.+|++|+||||++.+|+..     .   ...
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~----~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~  103 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ----PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGD  103 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTE----ESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCE----EeccccHHHHHhheEEEccccccCCcchhhheecccccc
Confidence            4689999999999999999999999999999999997    455555666788999999999887311     0   111


Q ss_pred             hhHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           74 QDKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        74 ~~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ...+.+.++++.....                ...-+||||||||+|||||+.+|+++++|   |||+.+|..++..++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililD---Epts~LD~~~~~~i~  179 (242)
T d1mv5a_         104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLD---EATASLDSESESMVQ  179 (242)
T ss_dssp             SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE---CCSCSSCSSSCCHHH
T ss_pred             cchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEec---CCccccCHHHHHHHH
Confidence            2233444455443321                11237999999999999999999999999   999999987766443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-35  Score=215.44  Aligned_cols=128  Identities=18%  Similarity=0.129  Sum_probs=101.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cCC--hh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TLD--IQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~~--~~   74 (143)
                      +..+||+||||||||||+++|+|+++|++|+|.++|.    ++...+...+|+.++||||++.+|...     ...  ..
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~----~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~  104 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH----DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM  104 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE----ETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCE----EecccchhhhhceEEEEecccccCCccccccccccCccc
Confidence            4679999999999999999999999999999999997    567778889999999999999877311     111  11


Q ss_pred             hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ..+.+.++++..++       .         ....+||||+|||+|||||+.+|+++++|   ||++.+|..+...++
T Consensus       105 ~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililD---Epts~LD~~~~~~i~  179 (241)
T d2pmka1         105 SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD---EATSALDYESEHVIM  179 (241)
T ss_dssp             CHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEEC---CCCSCCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhh---CCccccCHHHHHHHH
Confidence            22333344433321       0         12347999999999999999999999999   999999998887554

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-35  Score=216.22  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=98.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC---Ch
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL---DI   73 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~---~~   73 (143)
                      +..+||+||||||||||+++|+|+++|++|+|.++|.    ++...+.+.+|+.++||||++.+|...     .+   ..
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~----~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~  115 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGK----PLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQK  115 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE----EGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCE----ecchhhhHHHHHHhhhccccccccCcchhhhhhhhhccc
Confidence            4689999999999999999999999999999999997    566778888999999999999887311     01   11


Q ss_pred             hhHHHHHH---------HHHHh--hhh-----CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           74 QDKESVAK---------LVKLI--DKS-----NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        74 ~~~~~~~~---------~l~~l--~~~-----~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      .......+         .++.+  ++.     ....+||||||||+|||||+.+|+++++|   |||+.+|..++..++
T Consensus       116 ~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililD---EpTs~LD~~~~~~i~  191 (251)
T d1jj7a_         116 PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILD---DATSALDANSQLQVE  191 (251)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEec---CcCcccChhhHHHHH
Confidence            11111111         12222  111     12237999999999999999999999999   999999998876543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=5.7e-35  Score=215.72  Aligned_cols=128  Identities=17%  Similarity=0.170  Sum_probs=101.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhccccccccccc----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYSLVNFST----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~~~~~----------   70 (143)
                      ++.++|+||||||||||+|+|+|+++|++|+|+++|+    ++...++.+++ ..|+|+||++.+++..+          
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~----~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~  105 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK----DITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEI  105 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE----ECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCE----eccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhh
Confidence            4679999999999999999999999999999999997    44455555544 45999999998763211          


Q ss_pred             -----------------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhh
Q 032336           71 -----------------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSL  128 (143)
Q Consensus        71 -----------------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~  128 (143)
                                       ...+..+++.++++.+++.   ++++  +||||||||+|||||+++|++|++|   ||++.+|
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilD---EPt~gLD  182 (254)
T d1g6ha_         106 CPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD---EPIAGVA  182 (254)
T ss_dssp             STTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE---STTTTCC
T ss_pred             hccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhc---CCcccCC
Confidence                             0112235667777777653   4444  7999999999999999999999999   9999999


Q ss_pred             hhhhhhcc
Q 032336          129 AEVQEKYI  136 (143)
Q Consensus       129 ~~~~~~~~  136 (143)
                      ...+..+.
T Consensus       183 ~~~~~~i~  190 (254)
T d1g6ha_         183 PGLAHDIF  190 (254)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98877543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.8e-34  Score=212.91  Aligned_cols=128  Identities=16%  Similarity=0.135  Sum_probs=102.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------cCChh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------TLDIQ   74 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------~~~~~   74 (143)
                      +..+||+||||||||||+++|+|+++|++|+|.++|.    ++...+...+|+.++||+|++.+|...       .....
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~----~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~  119 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH----NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA  119 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTE----EGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCE----EcccCCHHHhhheeeeeeccccCCCCCHHHHHhccCcCC
Confidence            4679999999999999999999999999999999997    566678889999999999999887311       01111


Q ss_pred             hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      ..+.+.++++.+++       .         ....+||||+|||+|||||+.+|+++++|   ||++.+|..+...++
T Consensus       120 ~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililD---Epts~LD~~t~~~i~  194 (255)
T d2hyda1         120 TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILD---EATSALDLESESIIQ  194 (255)
T ss_dssp             CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEE---STTTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHHH
Confidence            23445556655432       1         11237999999999999999999999999   999999998877554

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.6e-34  Score=210.19  Aligned_cols=126  Identities=12%  Similarity=0.004  Sum_probs=101.2

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      ++.+||+||||||||||+|+|+|+++|++|+|.++|++    +.. .....++.++||||++.+++..+           
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~----i~~-~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~  102 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN----VVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF  102 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE----TTT-CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEe----ccc-ChHHHHhhEeEeeeccccCCCccHHHHHHHHHHh
Confidence            46789999999999999999999999999999999974    332 33567888999999987764332           


Q ss_pred             --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336           71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                        .. .+..+.++.+++.+++.   +.++  +||||||||+|||||+++|++++||   ||++.+|...+..+
T Consensus       103 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLD---EPt~gLD~~~~~~i  172 (238)
T d1vpla_         103 YASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD---EPTSGLDVLNAREV  172 (238)
T ss_dssp             HCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE---STTTTCCHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEec---CCCCCCCHHHHHHH
Confidence              11 22345567777777653   3444  7999999999999999999999999   99999998877644

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.97  E-value=5.7e-33  Score=198.50  Aligned_cols=123  Identities=14%  Similarity=0.128  Sum_probs=96.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-----------   70 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-----------   70 (143)
                      +..++|+||||||||||+++|+|+++|++|+|.++|..    +.     +.+..++|+||+..++...+           
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~----i~-----~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~   97 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVP----IT-----KVKGKIFFLPEEIIVPRKISVEDYLKAVASL   97 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE----GG-----GGGGGEEEECSSCCCCTTSBHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEe----hh-----HhcCcEEEEeecccCCCCcCHHHHHHHHHHh
Confidence            45789999999999999999999999999999999973    32     24567999999876542111           


Q ss_pred             C-ChhhHHHHHHHHHHhhhh--CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336           71 L-DIQDKESVAKLVKLIDKS--NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI  136 (143)
Q Consensus        71 ~-~~~~~~~~~~~l~~l~~~--~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~  136 (143)
                      . .+.+...+.++++.+++.  ...+  +||||||||+||||++++|+++++|   ||++.+|...+.+++
T Consensus        98 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllD---EPt~gLD~~~~~~i~  165 (200)
T d1sgwa_          98 YGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLD---DPVVAIDEDSKHKVL  165 (200)
T ss_dssp             TTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE---STTTTSCTTTHHHHH
T ss_pred             cCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEc---CcccccCHHHHHHHH
Confidence            1 122334566777777653  2232  7999999999999999999999999   999999998877554

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.3e-31  Score=192.38  Aligned_cols=126  Identities=12%  Similarity=0.058  Sum_probs=100.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc---------cccCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN---------FSTLD   72 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~---------~~~~~   72 (143)
                      ++.+||+||||||||||+++|+|+. |++|+|.++|+    ++..++..+++...+|++|+.....         +....
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   99 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQ----PLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD   99 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSS----BGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCE----ECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccch
Confidence            4679999999999999999999976 68999999996    5666777788888999998765321         11122


Q ss_pred             hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhh-------cCCcccccCCccccchhhhhhhhhc
Q 032336           73 IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVR-------NVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        73 ~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~-------~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      ....+.+.++++.+++.   +..+  +||||||||+||||+++       +|+++++|   ||++.+|...+..+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD---EPt~gLD~~~~~~i  171 (231)
T d1l7vc_         100 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD---EPMNSLDVAQQSAL  171 (231)
T ss_dssp             TTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES---SCSTTCCHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc---CCCCCCCHHHHHHH
Confidence            33456677888887763   3333  79999999999999998       77999999   99999998877654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.1e-31  Score=196.41  Aligned_cols=116  Identities=14%  Similarity=0.041  Sum_probs=88.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cCC-hhh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TLD-IQD   75 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~~-~~~   75 (143)
                      +..+||+||||||||||+++|+|+++|++|+|.++|+                 ++|++|++.+|+..     .+. ..+
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~-----------------i~~v~Q~~~l~~~tv~eni~~~~~~~  124 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR-----------------VSFCSQFSWIMPGTIKENIIFGVSYD  124 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSC-----------------EEEECSSCCCCSEEHHHHHTTTSCCC
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCE-----------------EEEEeccccccCceeecccccccccc
Confidence            4679999999999999999999999999999998873                 79999998876421     111 111


Q ss_pred             HHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336           76 KESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK  137 (143)
Q Consensus        76 ~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~  137 (143)
                      .....++++.+..       .         ...-+||||||||+|||||+++|++|+||   |||+.+|...++.+++
T Consensus       125 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLD---EPts~LD~~~~~~i~~  199 (281)
T d1r0wa_         125 EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLD---SPFGYLDVFTEEQVFE  199 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEE---SCCCSSCHHHHHHHHH
T ss_pred             chHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhc---CccccCCHHHHHHHHH
Confidence            2233333333221       1         11237999999999999999999999999   9999999988776543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.57  E-value=1.4e-16  Score=109.28  Aligned_cols=97  Identities=10%  Similarity=-0.007  Sum_probs=59.7

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcch-----hcccccccccccCC---hhh
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCD-----VIEDYSLVNFSTLD---IQD   75 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~-----V~Q~~~l~~~~~~~---~~~   75 (143)
                      +++|+||||||||||+++|+|.++++.|.+.+.+...    ..     ..++.++     ..+...+.......   ...
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRD----PE-----TKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS   72 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC---------------CCEEEEEETTCCEEEEEETTCCCSSEETT
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcch----HH-----HHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence            4899999999999999999999999999999877421    11     1111221     12221111100000   000


Q ss_pred             HHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCccccc
Q 032336           76 KESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYR  118 (143)
Q Consensus        76 ~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld  118 (143)
                      .....+.++         ++++++++.++++++..+|+++++|
T Consensus        73 ~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~vlllD  106 (178)
T d1ye8a1          73 YGVNVQYFE---------ELAIPILERAYREAKKDRRKVIIID  106 (178)
T ss_dssp             EEECHHHHH---------HHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             hhcCcchhh---------hhhhhhHHHHHHHHHhcCCCceeec
Confidence            000001111         2578999999999999999999999

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=5.1e-08  Score=64.74  Aligned_cols=29  Identities=24%  Similarity=0.151  Sum_probs=24.7

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCcccC
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLI   29 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~~~~   29 (143)
                      |-..++|+|++|||||||++.|...+...
T Consensus         1 m~Pvi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           1 MIPLLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            66789999999999999999998765544

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=7.6e-08  Score=64.28  Aligned_cols=34  Identities=32%  Similarity=0.390  Sum_probs=28.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCS   36 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~   36 (143)
                      ..+.|.||+|+|||||++.++..+......+.+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~   35 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGF   35 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            3578999999999999999999987776665443

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.26  E-value=2.7e-07  Score=60.95  Aligned_cols=26  Identities=35%  Similarity=0.606  Sum_probs=23.7

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      |...+.|.||+||||||+.+.|+..+
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            78899999999999999999998754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.21  E-value=3.3e-07  Score=61.08  Aligned_cols=25  Identities=20%  Similarity=0.363  Sum_probs=21.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ...++|.||+|||||||++.|+..+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3568999999999999999998754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.20  E-value=4.5e-07  Score=59.16  Aligned_cols=33  Identities=27%  Similarity=0.246  Sum_probs=24.9

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEc
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCS   36 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~   36 (143)
                      |...+.|.||+|||||||.+.|..   ...|.+.+.
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~---~~~~~~~~~   33 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIA---KNPGFYNIN   33 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH---HSTTEEEEC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH---hCCCCEEec
Confidence            677899999999999999997643   233555543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.18  E-value=3.5e-07  Score=61.05  Aligned_cols=30  Identities=27%  Similarity=0.130  Sum_probs=24.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceE
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNI   33 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i   33 (143)
                      .++|+|++|||||||+.-|...++...-+|
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v   32 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRV   32 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeE
Confidence            678999999999999988887776543343

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.17  E-value=4.7e-07  Score=61.40  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=21.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +..++|+||||||||||++.|....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            5678999999999999999886544

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=8.3e-07  Score=58.82  Aligned_cols=25  Identities=28%  Similarity=0.402  Sum_probs=22.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.+.|.||+||||||+.+.|+..+
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678899999999999999998765

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7.8e-07  Score=60.53  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=21.6

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhC
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |+..+.|+||||+|||||++-|..
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            788899999999999999997763

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=7.2e-07  Score=58.15  Aligned_cols=23  Identities=35%  Similarity=0.601  Sum_probs=20.5

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|+||+||||||+.+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998754

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.10  E-value=7.1e-07  Score=59.03  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=19.4

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .++|+||+||||||+.+.|+--
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.08  E-value=9.6e-07  Score=58.60  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +..+.|.||+||||||+.+.|+..+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468899999999999999998765

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=1.2e-07  Score=64.06  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHhCCc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ++|+|||||||||+|.+|.-.+
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4588999999999999987544

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.05  E-value=1e-06  Score=59.46  Aligned_cols=26  Identities=38%  Similarity=0.304  Sum_probs=22.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      ..+||-||+|||||||.+.|.-.+..
T Consensus        23 ~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          23 LVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            56899999999999999999866543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=7.1e-07  Score=64.73  Aligned_cols=38  Identities=8%  Similarity=-0.024  Sum_probs=27.7

Q ss_pred             CCchhHHHHHHHHHH----hhcCCcccccCCccccchhhhhhhhh
Q 032336           94 FAGMDASAVEFSKIA----VRNVDWDYYRYPSFHLFQSLAEVQEK  134 (143)
Q Consensus        94 lSgGe~qrv~ia~al----~~~p~~llld~~~~~~~~~~~~~~~~  134 (143)
                      +|.||++...++..+    ...+.+++.|   ||...|.+..+.+
T Consensus       220 ~~~g~~~l~~~~~~~~~~~~~~~~~~~iD---Epe~~Lhp~~~~~  261 (308)
T d1e69a_         220 LSGGEKALVGLALLFALMEIKPSPFYVLD---EVDSPLDDYNAER  261 (308)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTSCCSEEEEE---SCCSSCCHHHHHH
T ss_pred             hhHHHhhHHHHHhhhhhhhhccCchhhhh---hccccCCHHHHHH
Confidence            588999987776654    3366899999   8877777766654

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.04  E-value=1.3e-06  Score=58.71  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHhCCc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.|+||+||||||+.+.|+--+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999996543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.03  E-value=1.3e-06  Score=57.93  Aligned_cols=23  Identities=30%  Similarity=0.583  Sum_probs=20.3

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|.||+||||||+.+.|+-.+
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.03  E-value=1.3e-06  Score=58.43  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=22.5

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      |...+.|+|++||||||+-+.|+-.+
T Consensus         1 M~~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           1 MTEPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence            66778999999999999999997544

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.02  E-value=1.4e-06  Score=61.45  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=23.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC   34 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~   34 (143)
                      ..++++|+||+|||||++.|.+-..-..|+|.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            45789999999999999999987666667765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=1.5e-06  Score=57.25  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=22.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ++.++|+|+.|+|||||++.|.|.-
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5789999999999999999998753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.00  E-value=1.1e-06  Score=58.55  Aligned_cols=30  Identities=37%  Similarity=0.324  Sum_probs=24.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceE
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNI   33 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i   33 (143)
                      .++|.|++||||||+++.|+..+......+
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~~~~~~~   32 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNY   32 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence            578999999999999999987665544443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.99  E-value=1.8e-06  Score=57.18  Aligned_cols=26  Identities=23%  Similarity=0.269  Sum_probs=22.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ++.+.|+|++||||||+-+.|+..+.
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46788999999999999999986653

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=2.1e-06  Score=58.49  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 032336            5 QVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ++|+||||||||||.+.|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999988543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.93  E-value=2.5e-06  Score=56.34  Aligned_cols=24  Identities=17%  Similarity=0.267  Sum_probs=20.7

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      .+.|.||+||||||+.+.|+..+.
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            466779999999999999998763

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=3e-06  Score=58.64  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=22.2

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhC
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |.|.+||.|+.||||||.++.+..
T Consensus         2 mk~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHH
Confidence            789999999999999999998864

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.91  E-value=2.2e-06  Score=58.38  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .++|+|++|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5899999999999999999985

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=3e-06  Score=57.95  Aligned_cols=20  Identities=40%  Similarity=0.649  Sum_probs=17.8

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 032336            5 QVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g   24 (143)
                      ++|+||||||||||.+.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999998754

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.88  E-value=3.2e-06  Score=57.44  Aligned_cols=24  Identities=38%  Similarity=0.576  Sum_probs=20.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+||+||||||+.+.|+-.+
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999997543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.88  E-value=3.3e-06  Score=56.09  Aligned_cols=23  Identities=39%  Similarity=0.511  Sum_probs=20.3

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|+|++||||||+.+.|+..+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999998755

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.88  E-value=1.8e-06  Score=58.62  Aligned_cols=22  Identities=36%  Similarity=0.754  Sum_probs=19.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .-++|+||.||||||+.+.|+-
T Consensus         4 ~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3467999999999999999983

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.87  E-value=2.9e-06  Score=57.54  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=19.9

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|+||+||||||+.+.|+--+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999997544

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.87  E-value=4e-06  Score=57.85  Aligned_cols=24  Identities=38%  Similarity=0.425  Sum_probs=22.0

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhC
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |-|.+||.|+.||||||+++.+.-
T Consensus         1 M~~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           1 MTYIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999998864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.86  E-value=3.3e-06  Score=56.61  Aligned_cols=22  Identities=18%  Similarity=0.232  Sum_probs=20.3

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .++|+|++|+|||||++.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999985

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=4e-06  Score=57.64  Aligned_cols=33  Identities=33%  Similarity=0.512  Sum_probs=25.6

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCc---ccCCceE
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFL---SLIGSNI   33 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~---~~~~G~i   33 (143)
                      |...++|.||+||||||+.+.|+.-+   ..++|.+
T Consensus         2 ~~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           2 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            45678999999999999999997543   4455554

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.86  E-value=2.5e-06  Score=57.55  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 032336            5 QVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~   25 (143)
                      |||+|++++|||||++.|+|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=3.6e-06  Score=54.69  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=19.9

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +++|+|++|+|||||++.+.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998874

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.85  E-value=3.1e-06  Score=56.26  Aligned_cols=24  Identities=25%  Similarity=0.163  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|++|||||||++.+.+-.
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998764

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.5e-06  Score=57.54  Aligned_cols=24  Identities=38%  Similarity=0.540  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.+||-||+||||||+.+.|.-.+
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999886554

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.84  E-value=4.7e-06  Score=55.46  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=19.8

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|+|+.|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998854

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.83  E-value=4e-06  Score=58.38  Aligned_cols=22  Identities=36%  Similarity=0.590  Sum_probs=19.3

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .++|+||.|||||||++.|...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            4789999999999999988753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.83  E-value=4e-06  Score=62.74  Aligned_cols=39  Identities=3%  Similarity=-0.091  Sum_probs=30.6

Q ss_pred             CCchhHHHHHHHHHHh----hcCCcccccCCccccchhhhhhhhhc
Q 032336           94 FAGMDASAVEFSKIAV----RNVDWDYYRYPSFHLFQSLAEVQEKY  135 (143)
Q Consensus        94 lSgGe~qrv~ia~al~----~~p~~llld~~~~~~~~~~~~~~~~~  135 (143)
                      +||||+.++++|..++    ..++++++|   ||++.++.....++
T Consensus       333 lSgGEk~~~~lal~lal~~~~~~pililD---E~d~~Ld~~~~~~~  375 (427)
T d1w1wa_         333 LSGGEKTVAALALLFAINSYQPSPFFVLD---EVDAALDITNVQRI  375 (427)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSSCCSEEEES---STTTTCCHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHhcCCCCCEEEEe---CCCCCCCHHHHHHH
Confidence            4999999988776553    356799999   99999998766644

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.83  E-value=1.3e-06  Score=61.97  Aligned_cols=31  Identities=32%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC   34 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~   34 (143)
                      .++++|+||+|||||++.|.+-..-..|+|.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC----------
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            5689999999999999999997766777775

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.83  E-value=5.5e-06  Score=55.69  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..+||+|..|+|||||++.|.|-
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            57999999999999999999874

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.82  E-value=4.3e-06  Score=54.37  Aligned_cols=22  Identities=23%  Similarity=0.229  Sum_probs=19.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +++|+|++|+|||||++.+.+-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.81  E-value=5.2e-06  Score=55.90  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHhCCc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.|+||.||||||+.+.|+--+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999998654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=4.8e-06  Score=56.66  Aligned_cols=24  Identities=33%  Similarity=0.531  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..+.|+||+||||||+.+.|+..+
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            357899999999999999998754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=6e-06  Score=55.95  Aligned_cols=23  Identities=35%  Similarity=0.600  Sum_probs=20.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|+||+||||||..+.|+--+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999997533

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.80  E-value=5.4e-06  Score=55.07  Aligned_cols=23  Identities=39%  Similarity=0.655  Sum_probs=20.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|+|++||||||+-+.|+..+
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998655

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.79  E-value=5.5e-06  Score=54.17  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=20.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|++|||||||++.+.+-.
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            358999999999999999886653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=4.7e-06  Score=56.84  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..++|+|++|||||||++.|.+-
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999765

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.78  E-value=6.1e-06  Score=55.46  Aligned_cols=23  Identities=35%  Similarity=0.673  Sum_probs=19.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|+||+||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999997543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.77  E-value=1e-05  Score=53.26  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|+.|||||||++.+.+-.
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            578999999999999999998864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=7.3e-06  Score=54.28  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=20.8

Q ss_pred             Ce-eeEEEECCCCCcHHHHHHHHhC
Q 032336            1 MV-FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         1 ~~-~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |+ |+++|+|+.|+|||||++-+.+
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHh
Confidence            44 8999999999999999977754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.76  E-value=8.4e-06  Score=60.34  Aligned_cols=35  Identities=31%  Similarity=0.452  Sum_probs=29.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      ..+.|.||.||||||+++.|.+.+++..--|.+.+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd  201 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED  201 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred             CCEEEEeeccccchHHHHHHhhhcccccceeeccc
Confidence            34789999999999999999999988766666644

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=6.8e-06  Score=56.97  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      -.+.|+||||+|||||.+.|.-
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999987754

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=3.9e-06  Score=55.93  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=21.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|++++|||||++.|.+.-
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999998853

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=6.4e-06  Score=55.25  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=19.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|+||.||||||..+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36799999999999999997543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.74  E-value=8e-06  Score=54.19  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=21.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.++|+|.+|||||||++.+.+-
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            368999999999999999998875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.74  E-value=4.9e-06  Score=55.83  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHhCCc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +||+|++++|||||++.|.|.-
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999998753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.73  E-value=8.8e-06  Score=54.48  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .|+|+|.+|+|||||++.|.|-
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999975

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.71  E-value=6.6e-06  Score=58.10  Aligned_cols=32  Identities=31%  Similarity=0.435  Sum_probs=24.7

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      ++.|.||+|||||||.+.|++.+.  .+-+.++.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~   65 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   65 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh--cceEEEec
Confidence            578999999999999999998664  23444443

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.70  E-value=9.1e-06  Score=55.41  Aligned_cols=23  Identities=30%  Similarity=0.657  Sum_probs=20.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|+||.||||||+.+.|+--+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998643

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=5.3e-06  Score=55.80  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ..+.|+|++||||||+-+.|+..+.
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4577899999999999999987653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=1.1e-05  Score=53.74  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .|+|+|.+|+|||||++.|.|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999874

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.69  E-value=9.3e-06  Score=55.97  Aligned_cols=30  Identities=23%  Similarity=0.285  Sum_probs=22.7

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc---ccCCceE
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL---SLIGSNI   33 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~---~~~~G~i   33 (143)
                      .++|-||+||||||+.+.|+--+   ..++|.+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl   37 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM   37 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            36788999999999999997644   3344543

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.69  E-value=8.7e-06  Score=55.36  Aligned_cols=22  Identities=45%  Similarity=0.656  Sum_probs=19.5

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.|+||+||||||+.+.|+--
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=1e-05  Score=54.40  Aligned_cols=22  Identities=41%  Similarity=0.768  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHhCCc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.|+||.||||||+.+.|+--+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6799999999999999998643

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1e-05  Score=54.07  Aligned_cols=24  Identities=25%  Similarity=0.206  Sum_probs=21.3

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhC
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +|++++|+|++|+|||||++.+..
T Consensus         1 ~r~KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           1 IRKKLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999977654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=1.1e-05  Score=53.64  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |+++++|++|+|||||++-+.+
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            7899999999999999997753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.4e-05  Score=52.97  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=19.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |+++|+|..|+|||||++-+.+
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            7899999999999999987654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.66  E-value=9.6e-06  Score=54.98  Aligned_cols=24  Identities=42%  Similarity=0.671  Sum_probs=21.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|-|+.||||||+++.|...+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998765

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.5e-05  Score=52.92  Aligned_cols=25  Identities=24%  Similarity=0.519  Sum_probs=22.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .|+++|+|+.|+|||||++.+.+..
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCc
Confidence            3899999999999999999988764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.5e-05  Score=52.72  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.3

Q ss_pred             Ce-eeEEEECCCCCcHHHHHHHHh
Q 032336            1 MV-FGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         1 ~~-~~~~liGpnGaGKSTLl~~l~   23 (143)
                      || |+++|+|..|+|||||++-+.
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~   24 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CceeEEEEECCCCCCHHHHHHHHH
Confidence            55 899999999999999998664

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.65  E-value=1.2e-05  Score=53.62  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=20.5

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      .+.|.|++||||||+.+.|+..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            356889999999999999987764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.2e-05  Score=53.50  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=19.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +|+++|+|.+|+|||||++-+.+
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            47899999999999999986543

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.5e-05  Score=52.68  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |.++|+|++|+|||||++.+.+
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            6799999999999999987764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.4e-05  Score=53.35  Aligned_cols=23  Identities=30%  Similarity=0.611  Sum_probs=20.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .++++|+|++|+|||||++.+.+
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            47899999999999999986644

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.60  E-value=1.6e-05  Score=53.80  Aligned_cols=22  Identities=27%  Similarity=0.259  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +.+||.|+.||||||+.+.|.-
T Consensus         4 ~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.1e-05  Score=59.31  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=22.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      .|.+||-|++||||||+.+.|..++.
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            37899999999999999999887764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=1.6e-05  Score=52.78  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=19.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ++++|+|++|+|||||++.+.+
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            6799999999999999998764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.59  E-value=1.7e-05  Score=53.88  Aligned_cols=24  Identities=29%  Similarity=0.546  Sum_probs=20.9

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      .+.++|.+||||||+.+.|+..+.
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999986553

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=1.6e-05  Score=54.38  Aligned_cols=22  Identities=23%  Similarity=0.153  Sum_probs=19.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .|+|+|+.|+|||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999988753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=6.8e-05  Score=54.43  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=20.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.+||-|+.|||||||.+.|.-.+
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEeECCCCCCHHHHHHHHHHHH
Confidence            689999999999999998775443

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.5e-05  Score=52.52  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |+++|+|..|+|||||++-+.+
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHh
Confidence            6899999999999999997764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2.8e-05  Score=51.75  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=21.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      |+++|+|..|+|||||++.+.+..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCc
Confidence            889999999999999999887643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=1.4e-05  Score=59.25  Aligned_cols=25  Identities=32%  Similarity=0.599  Sum_probs=21.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      +.+||.||+|||||||+..+...+.
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            5689999999999999999876553

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=2e-05  Score=52.89  Aligned_cols=30  Identities=23%  Similarity=0.372  Sum_probs=22.5

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      .+.++|++||||||+.+-+..    ..|.+.++.
T Consensus        16 liil~G~pGsGKST~a~~l~~----~~~~~~i~~   45 (172)
T d1yj5a2          16 VVVAVGFPGAGKSTFIQEHLV----SAGYVHVNR   45 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHTG----GGTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHH----hcCCEEEch
Confidence            578999999999999987753    234555544

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2e-05  Score=52.42  Aligned_cols=22  Identities=27%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |+++|+|++|+|||||++-+.+
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            7899999999999999987653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.54  E-value=2e-05  Score=52.96  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=20.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      -+||+|+..||||||++.|.+.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            3899999999999999999874

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=1.9e-05  Score=52.40  Aligned_cols=23  Identities=39%  Similarity=0.631  Sum_probs=20.5

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .|+++|+|+.|+|||||++.+..
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            37899999999999999998765

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.53  E-value=1.9e-05  Score=56.36  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|.+|+|||||++.|.|.-
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCcHHHHHHHHhCCC
Confidence            368999999999999999999863

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.53  E-value=4.8e-06  Score=54.57  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .++|+|++++|||||++.|.|-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.52  E-value=2.2e-05  Score=51.76  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=18.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .++|+|++|+|||||++.+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            588999999999999997754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=2.9e-05  Score=51.02  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=20.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .|+++|+|..|+|||||++-+..
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            37899999999999999986653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=3e-05  Score=52.05  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +.++|+|+.|+|||||++-+.+-
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEEECCCCcCHHHHHHHHhcC
Confidence            57899999999999999887653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=1.6e-05  Score=52.97  Aligned_cols=23  Identities=35%  Similarity=0.577  Sum_probs=20.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .|+++|+|+.|+|||||++-+..
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            58999999999999999987654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=3e-05  Score=51.58  Aligned_cols=21  Identities=29%  Similarity=0.564  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHh
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~   23 (143)
                      |+++|+|++|+|||||++-+.
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~   27 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYV   27 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999996654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2.8e-05  Score=51.39  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=20.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .|+++|+|.+|+|||||++-+.+
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            47899999999999999986653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=2.8e-05  Score=54.47  Aligned_cols=24  Identities=42%  Similarity=0.631  Sum_probs=21.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      .+.|.||+|+||||++++++..+.
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            477999999999999999998653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.48  E-value=2.8e-05  Score=51.60  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..++|+|+.|+|||||++.+.+-
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999988664

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=2.7e-05  Score=52.85  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |+++|+|+.|+|||||++.+.+
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhh
Confidence            7899999999999999987654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=3.2e-05  Score=51.01  Aligned_cols=23  Identities=26%  Similarity=0.593  Sum_probs=19.9

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .|+++|+|.+|+|||||++-+.+
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            37899999999999999977654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=3.8e-05  Score=50.86  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~   23 (143)
                      .|+++++|..|+|||||++-+.
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~   27 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFV   27 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHH
Confidence            4889999999999999998776

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=4.5e-05  Score=50.18  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=19.5

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHh
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~   23 (143)
                      |.-+++|+|++|+|||||++-+.
T Consensus         1 ~~iKv~liG~~~vGKSsLi~rl~   23 (164)
T d1z2aa1           1 VAIKMVVVGNGAVGKSSMIQRYC   23 (164)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEEECCCCcCHHHHHHHHH
Confidence            34578999999999999997655

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=3.1e-05  Score=51.07  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ++++++|++|+|||||++-+..
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999987654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.43  E-value=3.8e-05  Score=53.26  Aligned_cols=23  Identities=39%  Similarity=0.603  Sum_probs=20.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|.||+|+||||+.++++..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            46799999999999999998754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.43  E-value=2.5e-05  Score=52.28  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|+|++|+|||||++-+.+-.
T Consensus        18 ~KI~lvG~~~vGKTsLi~~l~~~~   41 (182)
T d1moza_          18 LRILILGLDGAGKTTILYRLQIGE   41 (182)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCCSE
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            578999999999999999886543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.42  E-value=2.7e-05  Score=54.28  Aligned_cols=26  Identities=35%  Similarity=0.491  Sum_probs=22.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLI   29 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~   29 (143)
                      ++-+.||+|+||||+.++++..+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~   62 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTN   62 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCC
Confidence            57799999999999999999776543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.41  E-value=3.9e-05  Score=51.41  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ++++|+|.+|+|||||++-+.+
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6799999999999999986653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=4.9e-05  Score=50.14  Aligned_cols=22  Identities=18%  Similarity=0.373  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ++++|+|.+|+|||||++-+..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            6799999999999999987753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=3.6e-05  Score=50.76  Aligned_cols=22  Identities=14%  Similarity=0.193  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +.++|+|+.|+|||||++.+.+
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999988653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=4.3e-05  Score=50.56  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=19.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHHh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~   23 (143)
                      .|+++|+|+.|+|||||++-+.
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~   27 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFK   27 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHH
Confidence            4789999999999999998653

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=4.3e-05  Score=52.90  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=20.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|.||+|+||||+.++++..+
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHH
Confidence            36799999999999999998754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=2.9e-05  Score=51.64  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=10.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |+++|+|..|+|||||++.+.+
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            7899999999999999986664

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=4.7e-05  Score=50.48  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      |.++|+|..|+|||||++-+.+
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            7899999999999999987654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=4.1e-05  Score=50.83  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ++++|+|..|+|||||++-+.+
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6899999999999999987653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=2.9e-05  Score=53.90  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=21.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ..++|-|+-||||||+++.|+..+.
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3578999999999999999998663

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.37  E-value=5e-05  Score=53.09  Aligned_cols=28  Identities=21%  Similarity=0.364  Sum_probs=23.3

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGS   31 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G   31 (143)
                      .+.|.||.|+||||+++.++..++...+
T Consensus        45 ~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence            5789999999999999999987754433

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.34  E-value=6.2e-05  Score=49.80  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=19.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~   23 (143)
                      -|+++|+|..|+|||||++-+.
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~   25 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFM   25 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHH
Confidence            4889999999999999998764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.34  E-value=4.5e-05  Score=53.17  Aligned_cols=24  Identities=38%  Similarity=0.585  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++-+.||+|+||||+.+++++.+
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            357799999999999999999765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=5.7e-05  Score=50.19  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=19.8

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhC
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .++++|+|..|+|||||++-+..
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            37899999999999999986653

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=5.9e-05  Score=53.21  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=17.5

Q ss_pred             eEEEECCCCCcHHHHHHHHh
Q 032336            4 GQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~   23 (143)
                      .+.|-|||.+||||+||.++
T Consensus        43 ~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          43 MLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeccCchhhHHHHHHHH
Confidence            46789999999999999874

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=6.3e-05  Score=56.95  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..++|+|.+|+|||||++.|.|..
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            458999999999999999999853

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.29  E-value=7.5e-05  Score=51.97  Aligned_cols=24  Identities=38%  Similarity=0.758  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++++||+|+||||.+-=|+-.+
T Consensus        12 ~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2          12 FVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999874444444

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=6.8e-05  Score=52.14  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=22.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      +.++++||+|+||||.+-=|+..+.-..-+|.+
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~l   42 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVML   42 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            467899999999999875555555433334543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.29  E-value=7.3e-05  Score=52.96  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=21.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++-|.||+|||||++.+.|+...
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcc
Confidence            468899999999999999998754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.27  E-value=7.6e-05  Score=51.76  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=23.3

Q ss_pred             eeEEEECCCCCcHHHHHHHH-hCCcccCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGM-SQFLSLIGS   31 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l-~g~~~~~~G   31 (143)
                      |++.|+|++|+|||||++-+ .+-..|+-|
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            78999999999999999765 344456666

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.26  E-value=7.8e-05  Score=54.96  Aligned_cols=24  Identities=29%  Similarity=0.537  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++|.||.|||||||+..+...+
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHHH
Confidence            569999999999999998887543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=7.5e-05  Score=49.73  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      .+++|+|..|+|||||++.+.+
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999997765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.26  E-value=7e-05  Score=54.70  Aligned_cols=24  Identities=29%  Similarity=0.556  Sum_probs=21.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++.++||+|||||+|.|.|+..+
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhcc
Confidence            467899999999999999999865

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.26  E-value=2.7e-05  Score=57.25  Aligned_cols=26  Identities=31%  Similarity=0.575  Sum_probs=22.7

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ++++-|+||.|+|||||.|.+.++++
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCeEEEECCCCccHHHHHHHHHHhCC
Confidence            36788999999999999999988763

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.25  E-value=5.8e-05  Score=50.06  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..+.|+|++|+|||||++.+..-.
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999887544

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.25  E-value=7.1e-05  Score=53.75  Aligned_cols=25  Identities=32%  Similarity=0.527  Sum_probs=23.3

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCC
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      |...+||||-+-+||||||+.|++-
T Consensus         1 m~~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           1 MGFKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHCC
Confidence            7889999999999999999999965

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.25  E-value=8.2e-05  Score=50.51  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=20.8

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      .|+|-|+-||||||+++.|...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999986553

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=9.3e-05  Score=49.53  Aligned_cols=25  Identities=24%  Similarity=0.302  Sum_probs=20.5

Q ss_pred             CeeeEEEECCCCCcHHHHHHHH-hCC
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGM-SQF   25 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l-~g~   25 (143)
                      +|-+++|+|.+|+|||||++-+ .+-
T Consensus         1 ~~~KivliG~~~vGKTsli~r~~~~~   26 (179)
T d1m7ba_           1 VKCKIVVVGDSQCGKTALLHVFAKDC   26 (179)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCC
Confidence            4678999999999999999644 443

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.22  E-value=8.9e-05  Score=51.93  Aligned_cols=20  Identities=25%  Similarity=0.443  Sum_probs=17.5

Q ss_pred             eEEEECCCCCcHHHHHHHHh
Q 032336            4 GQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~   23 (143)
                      .+.|-|||.+||||+||.++
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhH
Confidence            36799999999999999764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.21  E-value=7.7e-05  Score=51.69  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=22.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC   34 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~   34 (143)
                      ..++++||+|+||||.+-=|+..+.-..-+|.
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~   38 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM   38 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            45789999999999997555555543333443

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.20  E-value=8.3e-05  Score=51.91  Aligned_cols=22  Identities=18%  Similarity=0.096  Sum_probs=18.9

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.|.||.|+|||||++.++.-
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            5779999999999999877653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=9.5e-05  Score=50.59  Aligned_cols=25  Identities=36%  Similarity=0.286  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ..++|-|+.||||||+++.|...+.
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999886553

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.0001  Score=52.50  Aligned_cols=24  Identities=33%  Similarity=0.721  Sum_probs=21.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ++-|.||+|||||++.+.|+..+.
T Consensus        47 ~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEeeCCCCCCccHHHHHHHHHcC
Confidence            577999999999999999997653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.0001  Score=50.80  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=19.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+-|.||+|+||||+.++++..+
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHHH
Confidence            46789999999999999887654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00011  Score=49.23  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.1

Q ss_pred             eeeEEEECCCCCcHHHHHHHHh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~   23 (143)
                      -++++|+|..|+|||||++-+.
T Consensus         9 ~~Ki~lvG~~~vGKTsLi~r~~   30 (185)
T d2atxa1           9 MLKCVVVGDGAVGKTCLLMSYA   30 (185)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHh
Confidence            3679999999999999997654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.15  E-value=7.9e-05  Score=51.78  Aligned_cols=32  Identities=22%  Similarity=0.425  Sum_probs=17.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC   34 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~   34 (143)
                      +.++++||+|+||||.+-=|+..+.-..-+|-
T Consensus        13 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~   44 (211)
T d1j8yf2          13 YVIMLVGVQGTGKATTAGKLAYFYKKKGFKVG   44 (211)
T ss_dssp             EEEEEECSCCC----HHHHHHHHHHHTTCCEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCceE
Confidence            45788999999999987555544443333443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00011  Score=48.51  Aligned_cols=21  Identities=19%  Similarity=0.340  Sum_probs=18.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +++|+|+.|+|||||++-+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999987764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.14  E-value=0.00012  Score=51.88  Aligned_cols=23  Identities=35%  Similarity=0.712  Sum_probs=20.9

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ++-+.||+|+|||||.+.|+..+
T Consensus        44 giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEecCCCCChhHHHHHHHHHc
Confidence            57899999999999999999765

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00012  Score=48.33  Aligned_cols=21  Identities=19%  Similarity=0.321  Sum_probs=18.1

Q ss_pred             eEEEECCCCCcHHHHHHHHhC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +++|+|..|+|||||++-+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999986543

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.0001  Score=51.31  Aligned_cols=22  Identities=32%  Similarity=0.626  Sum_probs=19.5

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.|.||+|+||||+.+.++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4679999999999999999764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00015  Score=48.63  Aligned_cols=29  Identities=21%  Similarity=0.299  Sum_probs=22.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC--cccCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF--LSLIGS   31 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~--~~~~~G   31 (143)
                      .++.|+|.+|+|||||++-+.-.  ..|+-|
T Consensus         3 iKivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            57899999999999999877322  346777

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=0.00012  Score=48.75  Aligned_cols=31  Identities=19%  Similarity=0.207  Sum_probs=25.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNI   33 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i   33 (143)
                      .++.|+|..|+|||||++-+..-..|+.|..
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence            5789999999999999988766556776643

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.09  E-value=6.1e-05  Score=54.75  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=19.4

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLI   29 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~   29 (143)
                      .+||-|+|||||||+.+.|..++...
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~   31 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRRE   31 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            68999999999999999888776543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00015  Score=48.40  Aligned_cols=22  Identities=27%  Similarity=0.311  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      -+++|+|.+|+|||||++-+..
T Consensus         6 iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999976553

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00013  Score=50.27  Aligned_cols=26  Identities=23%  Similarity=0.176  Sum_probs=21.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      ..++|-|+-||||||+.+.|...+..
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~   29 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCA   29 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            35778899999999999998776543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.08  E-value=0.00017  Score=49.86  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=19.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      .+.++||+|+||||.+-=|+..+.
T Consensus        12 vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          12 LWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            467899999999998866665554

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00017  Score=48.22  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=19.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +.++++|+.|+|||||++-+.+
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999986544

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.05  E-value=0.00015  Score=49.86  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=19.8

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ++-|.||+|+||||+.++++..+
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHh
Confidence            35699999999999999998753

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.03  E-value=0.00014  Score=50.59  Aligned_cols=22  Identities=27%  Similarity=0.235  Sum_probs=20.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+||+|...||||||++.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            4899999999999999999764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.03  E-value=0.0002  Score=49.35  Aligned_cols=36  Identities=17%  Similarity=0.059  Sum_probs=26.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCccc--CCceEEEcce
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSL--IGSNICCSNV   38 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~--~~G~i~~~g~   38 (143)
                      +.+-|.|.+||||||+.+.|...+..  ..-.+.++|.
T Consensus        25 ~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD   62 (208)
T d1m7ga_          25 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD   62 (208)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcch
Confidence            46789999999999999998754422  2234566663

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00019  Score=50.94  Aligned_cols=24  Identities=33%  Similarity=0.613  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++-|.||+|+|||++.+.++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHh
Confidence            367899999999999999999854

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.98  E-value=0.00023  Score=48.00  Aligned_cols=21  Identities=24%  Similarity=0.495  Sum_probs=17.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHh
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~   23 (143)
                      .++.|.|++|+||||+.-.+.
T Consensus        15 ~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHH
Confidence            578899999999999876544

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.00016  Score=51.68  Aligned_cols=24  Identities=33%  Similarity=0.600  Sum_probs=21.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++-|.||+|+|||+|.+.+++.+
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            357799999999999999999865

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.97  E-value=0.00018  Score=54.40  Aligned_cols=29  Identities=38%  Similarity=0.321  Sum_probs=22.3

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCce
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSN   32 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~   32 (143)
                      .+.|.||.||||||++..+...+.....+
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~~~~~~~  188 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQELNSSERN  188 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred             eEEEEcCCCCCccHHHHHHhhhhcCCCce
Confidence            36789999999999999988865433334

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00021  Score=49.32  Aligned_cols=25  Identities=32%  Similarity=0.320  Sum_probs=21.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ..++|-|+-||||||+.+.|.-.+.
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4688999999999999999986664

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.93  E-value=0.00016  Score=50.67  Aligned_cols=22  Identities=32%  Similarity=0.246  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHhCCc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.|.||.|+||||+++.++..+
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            3456999999999999998765

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00023  Score=47.46  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ..+.|.||+|||||||+..++.
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4578999999999999876653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.87  E-value=0.00026  Score=51.40  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=19.9

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+||+|.+-+||||||+.|+|.-
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC
Confidence            48999999999999999998863

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.86  E-value=0.00028  Score=47.60  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=17.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHh
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~   23 (143)
                      .++.|.||+|+|||||...+.
T Consensus        16 ~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHH
Confidence            568899999999999976554

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00028  Score=47.44  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=17.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHh
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~   23 (143)
                      -+++|+|+.|+|||||++-+.
T Consensus         4 iKvvllG~~~vGKTSli~r~~   24 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYT   24 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHH
Confidence            368999999999999996554

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.00033  Score=46.64  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      +++.|+|..|+|||||++-+..
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            5789999999999999987743

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.81  E-value=0.00026  Score=51.18  Aligned_cols=22  Identities=23%  Similarity=0.525  Sum_probs=20.5

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+||||-+-+||||||+.|++-
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            6899999999999999999875

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.71  E-value=0.00045  Score=46.22  Aligned_cols=22  Identities=23%  Similarity=0.370  Sum_probs=17.6

Q ss_pred             eeeEEEECCCCCcHHHHHHHHh
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~   23 (143)
                      +.++.|.|++|+||||+.-.+.
T Consensus        15 g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHH
Confidence            3578899999999999875443

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.69  E-value=0.0003  Score=53.87  Aligned_cols=23  Identities=30%  Similarity=0.628  Sum_probs=21.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      -+-+|||+|||||-|.|.|++++
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            36799999999999999999976

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.68  E-value=0.00055  Score=47.44  Aligned_cols=22  Identities=23%  Similarity=0.080  Sum_probs=19.3

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ..+||.|+-||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999853

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.65  E-value=0.00062  Score=45.89  Aligned_cols=23  Identities=22%  Similarity=0.318  Sum_probs=20.4

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      -+||+|.-.+|||||++.|.|..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEEeccCCcHHHHHHHHHhhh
Confidence            36999999999999999998854

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00053  Score=47.40  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=20.4

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|=|+-||||||+++.|.-.+
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            57899999999999999998654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00055  Score=49.22  Aligned_cols=24  Identities=17%  Similarity=0.169  Sum_probs=21.5

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ..|+|+||-++||||||+.|.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            468999999999999999999864

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00057  Score=51.20  Aligned_cols=33  Identities=18%  Similarity=0.115  Sum_probs=21.8

Q ss_pred             eeEEEECCCCCcHHHHHHHH-hCCcccCCceEEE
Q 032336            3 FGQVVIGPPGSGKTTYCNGM-SQFLSLIGSNICC   35 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l-~g~~~~~~G~i~~   35 (143)
                      .++.|+|++||||||+++.+ ..++....+-|.+
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iii   84 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIV   84 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            35789999999999998644 3433333333333

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.49  E-value=0.00069  Score=48.77  Aligned_cols=23  Identities=26%  Similarity=0.309  Sum_probs=21.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++|+|.-.||||||++.|.|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999975

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.00065  Score=46.43  Aligned_cols=21  Identities=19%  Similarity=0.370  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHh
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~   23 (143)
                      ..+-|.||+|||||||+..++
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHH
Confidence            357799999999999987664

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.44  E-value=0.00071  Score=48.45  Aligned_cols=22  Identities=18%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHhCCc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ++|+|.-.||||||++.|.|.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999974

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.36  E-value=0.00092  Score=46.03  Aligned_cols=23  Identities=22%  Similarity=0.252  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..+.|.||+|||||||+.-++--
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            46789999999999998655443

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0011  Score=45.35  Aligned_cols=24  Identities=21%  Similarity=0.475  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +++-+.||+|+||||+.+.++..+
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhc
Confidence            457899999999999999888754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0013  Score=45.12  Aligned_cols=21  Identities=19%  Similarity=0.170  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHh
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~   23 (143)
                      ..+.|.||+||||||+...++
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            467899999999999987665

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=96.28  E-value=0.0013  Score=46.96  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=19.7

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHh
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~   23 (143)
                      |-.-++|+|+.|||||||+..|.
T Consensus         1 ~iRNv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           1 MIRTVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CeeEEEEEcCCCCcHHHHHHHHH
Confidence            34568999999999999999883

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.28  E-value=0.0012  Score=45.38  Aligned_cols=21  Identities=33%  Similarity=0.335  Sum_probs=17.3

Q ss_pred             eeeEEEECCCCCcHHHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNGM   22 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l   22 (143)
                      +..+.|.||+||||||+.--+
T Consensus        36 G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHH
Confidence            456889999999999997543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.26  E-value=0.00074  Score=50.30  Aligned_cols=25  Identities=28%  Similarity=0.303  Sum_probs=22.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ..+.+.||+|+||||+.+.|++.+.
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3678999999999999999998764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.25  E-value=0.0012  Score=45.40  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHhCCc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.|.||+|+|||-|++.++.-.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            6799999999999999887654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=96.23  E-value=0.0022  Score=47.22  Aligned_cols=32  Identities=22%  Similarity=0.061  Sum_probs=25.4

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      .|.|=|+-|+||||+++.|...+....+.+.+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence            46788999999999999999987655444443

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.0013  Score=45.72  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=18.9

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+-|.||+|+||||+.++++..+
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            35678999999999999986543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.19  E-value=0.0014  Score=44.76  Aligned_cols=20  Identities=30%  Similarity=0.333  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 032336            5 QVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g   24 (143)
                      ++|+|.-+||||||+..|..
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            79999999999999988854

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0015  Score=47.51  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=20.5

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.++||+|+|||.|.+.|+..+
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhhc
Confidence            35789999999999999999876

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.07  E-value=0.0021  Score=43.57  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHhCCc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +||+|.-.+|||||+..|.+..
T Consensus        11 i~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          11 IGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEccCCcHHHHHHHHHhhh
Confidence            7999999999999999998854

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.05  E-value=0.0019  Score=42.56  Aligned_cols=23  Identities=39%  Similarity=0.406  Sum_probs=20.0

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|.|+=||||||+.|.++.-+
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEecCCCccHHHHHHHHHhhc
Confidence            47899999999999999887655

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.00  E-value=0.0017  Score=43.99  Aligned_cols=20  Identities=30%  Similarity=0.498  Sum_probs=16.6

Q ss_pred             eeEEEECCCCCcHHHHHHHH
Q 032336            3 FGQVVIGPPGSGKTTYCNGM   22 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l   22 (143)
                      ..+.|.|++|+|||||+.-+
T Consensus        27 ~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHH
Confidence            46789999999999997543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.95  E-value=0.0018  Score=46.41  Aligned_cols=19  Identities=21%  Similarity=0.183  Sum_probs=17.4

Q ss_pred             eEEEECCCCCcHHHHHHHH
Q 032336            4 GQVVIGPPGSGKTTYCNGM   22 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l   22 (143)
                      -++|+|..|||||||+-.|
T Consensus         8 ni~i~gh~~~GKTtL~e~l   26 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERI   26 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHH
Confidence            4899999999999999777

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0021  Score=45.89  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCC
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      .+.|+||+|.|||+++.-++..
T Consensus        41 n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHH
Confidence            4679999999999999888764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.93  E-value=0.0028  Score=46.38  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=23.0

Q ss_pred             eEEE-ECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336            4 GQVV-IGPPGSGKTTYCNGMSQFLSLIGSNICCSN   37 (143)
Q Consensus         4 ~~~l-iGpnGaGKSTLl~~l~g~~~~~~G~i~~~g   37 (143)
                      ++.| .||+|+|||.|.+.|++.+.....-+.+.+
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~  158 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRF  158 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEB
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEh
Confidence            3344 699999999999999986432222344544

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0023  Score=43.56  Aligned_cols=23  Identities=43%  Similarity=0.791  Sum_probs=19.8

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|+||+|.|||+++.-++..+
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHH
Confidence            46799999999999998888654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.91  E-value=0.002  Score=47.41  Aligned_cols=31  Identities=23%  Similarity=0.252  Sum_probs=24.9

Q ss_pred             EEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      |+|=|+=||||||+++.|...+......+.+
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~   38 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAITPNRILL   38 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence            7899999999999999999877655444443

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.88  E-value=0.0023  Score=43.47  Aligned_cols=21  Identities=29%  Similarity=0.172  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCcHHHHHHHHh
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~   23 (143)
                      ..+.|.|++|+||||++--++
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            467899999999999976554

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.79  E-value=0.0026  Score=44.68  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ..+.|.|++|+||||++.-++-
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            4678999999999999876664

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.76  E-value=0.0018  Score=45.81  Aligned_cols=15  Identities=40%  Similarity=0.523  Sum_probs=13.0

Q ss_pred             EEEECCCCCcHHHHH
Q 032336            5 QVVIGPPGSGKTTYC   19 (143)
Q Consensus         5 ~~liGpnGaGKSTLl   19 (143)
                      +.|+|+.||||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            568999999999864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0022  Score=44.25  Aligned_cols=23  Identities=26%  Similarity=0.219  Sum_probs=19.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      ..+.|-|.=|||||||++-+...
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            35678999999999999887653

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.71  E-value=0.002  Score=46.01  Aligned_cols=15  Identities=33%  Similarity=0.519  Sum_probs=13.1

Q ss_pred             EEEECCCCCcHHHHH
Q 032336            5 QVVIGPPGSGKTTYC   19 (143)
Q Consensus         5 ~~liGpnGaGKSTLl   19 (143)
                      +.|+|+.||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            568999999999875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.68  E-value=0.0035  Score=44.53  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g   24 (143)
                      ..++|.|.-|.|||||.+.+..
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999987753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0027  Score=44.39  Aligned_cols=21  Identities=19%  Similarity=0.377  Sum_probs=17.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHh
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~   23 (143)
                      ..+.|.|++|+|||||+-.|+
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            356799999999999986554

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.61  E-value=0.0029  Score=46.44  Aligned_cols=23  Identities=35%  Similarity=0.365  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHhCCcc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      |+|=|+-||||||+++.|...+.
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEECCcCCCHHHHHHHHHHHhC
Confidence            78899999999999999987654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.0027  Score=45.13  Aligned_cols=35  Identities=20%  Similarity=0.027  Sum_probs=24.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc-ccCCceEEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL-SLIGSNICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~-~~~~G~i~~~g   37 (143)
                      ..+-|.||+|||||||+-.++... ++..--++++.
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidt   90 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   90 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            467899999999999986555443 44333456555

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.40  E-value=0.0032  Score=44.87  Aligned_cols=35  Identities=20%  Similarity=0.191  Sum_probs=24.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCce-EEEcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSN-ICCSN   37 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~-i~~~g   37 (143)
                      ..+-|.||+|||||||+..++....-..|. ++++.
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDt   93 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA   93 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEEC
Confidence            357899999999999987776655433444 45544

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0039  Score=44.94  Aligned_cols=26  Identities=23%  Similarity=0.485  Sum_probs=21.7

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCccc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSL   28 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~   28 (143)
                      -..+|+|++|+|||||+..|+.-...
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence            45789999999999999988875543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.36  E-value=0.004  Score=44.41  Aligned_cols=36  Identities=22%  Similarity=0.087  Sum_probs=25.0

Q ss_pred             eeeEEEECCCCCcHHHHHHHHhCCcccCCce-EEEcc
Q 032336            2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSN-ICCSN   37 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~-i~~~g   37 (143)
                      +..+-|.||+|+|||||+-.++.......|. |+++.
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDt   96 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDA   96 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence            3467899999999999976665544444555 45554

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.32  E-value=0.0044  Score=41.96  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 032336            5 QVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~   25 (143)
                      +||+|.-.+|||||+..|.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            799999999999999988764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.23  E-value=0.004  Score=44.30  Aligned_cols=27  Identities=19%  Similarity=0.317  Sum_probs=22.8

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGS   31 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G   31 (143)
                      .+.|.||.++||||++.+|..++ +..|
T Consensus       106 ~~~l~G~~~tGKS~f~~~i~~~l-g~~~  132 (267)
T d1u0ja_         106 TIWLFGPATTGKTNIAEAIAHTV-PFYG  132 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS-SCEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh-cchh
Confidence            56799999999999999999887 4444

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.13  E-value=0.0059  Score=45.25  Aligned_cols=22  Identities=41%  Similarity=0.742  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHhCCc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +-++||+|+|||-|.|.|+.+.
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             eeeeCCCCccHHHHHHHHHhhc
Confidence            6789999999999999998765

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=94.96  E-value=0.0099  Score=38.06  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=21.0

Q ss_pred             CeeeEEEECCCCCcHHH-HHHHHhCC
Q 032336            1 MVFGQVVIGPPGSGKTT-YCNGMSQF   25 (143)
Q Consensus         1 ~~~~~~liGpnGaGKST-Ll~~l~g~   25 (143)
                      |++...|+||=.||||| |++.+-..
T Consensus         1 ~G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           1 IGWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEccccCHHHHHHHHHHHHH
Confidence            78889999999999999 66766554

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.77  E-value=0.0079  Score=43.63  Aligned_cols=22  Identities=32%  Similarity=0.605  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHhCCc
Q 032336            5 QVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      +.++||+|+|||.+.+.|+..+
T Consensus        56 ~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          56 FLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCcchHHHHHHHHHHHh
Confidence            4578999999999999998876

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.74  E-value=0.0081  Score=41.22  Aligned_cols=19  Identities=32%  Similarity=0.464  Sum_probs=17.2

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 032336            5 QVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~   23 (143)
                      ++|+|.-++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7899999999999998774

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.014  Score=43.04  Aligned_cols=17  Identities=47%  Similarity=0.661  Sum_probs=14.6

Q ss_pred             eEEEECCCCCcHHHHHH
Q 032336            4 GQVVIGPPGSGKTTYCN   20 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~   20 (143)
                      .+.|.||.|+||||++.
T Consensus       165 ~~vI~G~pGTGKTt~i~  181 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVA  181 (359)
T ss_dssp             EEEEECCTTSTHHHHHH
T ss_pred             eEEEEcCCCCCceehHH
Confidence            46799999999999874

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.52  E-value=0.0076  Score=44.21  Aligned_cols=20  Identities=40%  Similarity=0.685  Sum_probs=17.9

Q ss_pred             eEEEECCCCCcHHHHHHHHh
Q 032336            4 GQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~   23 (143)
                      .++|+|||||||||+|.+|.
T Consensus        27 l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999874

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=94.48  E-value=0.014  Score=41.23  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=22.0

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      ..++|+|-+-+|||||++.|.|.-.
T Consensus       113 ~~v~vvG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         113 IRALIIGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             eEEEEEecCccchhhhhhhhhccce
Confidence            3589999999999999999999654

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.46  E-value=0.0082  Score=44.85  Aligned_cols=20  Identities=50%  Similarity=0.909  Sum_probs=17.0

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 032336            5 QVVIGPPGSGKTTYCNGMSQ   24 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~g   24 (143)
                      +.||||+|.|||+++.-++.
T Consensus        46 ~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHH
Confidence            57999999999999876654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.41  E-value=0.014  Score=36.54  Aligned_cols=33  Identities=18%  Similarity=0.157  Sum_probs=24.4

Q ss_pred             eeeEEEECCCCCcHHHHHHHH-hCCcccCC-ceEE
Q 032336            2 VFGQVVIGPPGSGKTTYCNGM-SQFLSLIG-SNIC   34 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~l-~g~~~~~~-G~i~   34 (143)
                      +|.+.+-|-+|||||||-+.| ..++.-.. -.|.
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vt   40 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYK   40 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEE
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceE
Confidence            578899999999999999888 44444332 3454

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=94.34  E-value=0.013  Score=40.29  Aligned_cols=19  Identities=21%  Similarity=0.272  Sum_probs=17.5

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 032336            5 QVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l~   23 (143)
                      ++++|.-.+|||||+..|.
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999884

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.12  E-value=0.015  Score=39.25  Aligned_cols=24  Identities=8%  Similarity=0.098  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .++.+.||+|+||||+.+.++..+
T Consensus        16 ~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          16 ISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999999999887754

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.11  E-value=0.01  Score=37.11  Aligned_cols=18  Identities=33%  Similarity=0.464  Sum_probs=14.4

Q ss_pred             EEEECCCCCcHHHHHHHH
Q 032336            5 QVVIGPPGSGKTTYCNGM   22 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l   22 (143)
                      ..|.+|.|||||+++-.+
T Consensus        11 ~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1          11 AHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             EEEECCTTSCTTTHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHH
Confidence            357999999999987543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.66  E-value=0.019  Score=40.93  Aligned_cols=23  Identities=22%  Similarity=0.133  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCC
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQF   25 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~   25 (143)
                      -.++|+|++|+|||||+..++.-
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHH
Confidence            35789999999999998777543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.53  E-value=0.015  Score=42.70  Aligned_cols=20  Identities=25%  Similarity=0.351  Sum_probs=18.0

Q ss_pred             eEEEECCCCCcHHHHHHHHh
Q 032336            4 GQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~   23 (143)
                      -+||+|.-|+|||||+..|.
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHH
Confidence            38999999999999998884

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.39  E-value=0.022  Score=39.55  Aligned_cols=20  Identities=40%  Similarity=0.453  Sum_probs=17.4

Q ss_pred             eEEEECCCCCcHHHHHHHHh
Q 032336            4 GQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~   23 (143)
                      -++|+|.-++|||||+..|.
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            47899999999999987763

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.35  E-value=0.024  Score=39.48  Aligned_cols=20  Identities=20%  Similarity=0.345  Sum_probs=17.6

Q ss_pred             eEEEECCCCCcHHHHHHHHh
Q 032336            4 GQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~   23 (143)
                      -+.|.|+.|+||+++.+.|-
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHH
Confidence            36789999999999999884

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.33  E-value=0.011  Score=40.28  Aligned_cols=27  Identities=22%  Similarity=0.481  Sum_probs=22.7

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcccCCceE
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNI   33 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i   33 (143)
                      .+.|.||.++|||+++..|+.++   .|.+
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~~l---~G~v   81 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIHFI---QGAV   81 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHH---TCEE
T ss_pred             EEEEECCCCccHHHHHHHHHHHh---CCEE
Confidence            57899999999999999888876   3554

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.76  E-value=0.041  Score=39.08  Aligned_cols=31  Identities=16%  Similarity=0.068  Sum_probs=21.4

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcccCCceE
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNI   33 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i   33 (143)
                      -.++|+|++|+|||||+..+..-...+...+
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~   98 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILNQQGQNVIC   98 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHTCCTTTCEE
T ss_pred             ceEeeccCCCCChHHHHHHHHhhhcccCcee
Confidence            3568999999999999876544333343333

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.70  E-value=0.021  Score=39.81  Aligned_cols=18  Identities=33%  Similarity=0.475  Sum_probs=17.0

Q ss_pred             EEEECCCCCcHHHHHHHH
Q 032336            5 QVVIGPPGSGKTTYCNGM   22 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l   22 (143)
                      ++|+|.-++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            899999999999999877

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=92.52  E-value=0.036  Score=44.21  Aligned_cols=23  Identities=35%  Similarity=0.576  Sum_probs=20.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|.|.||||||+-.|.|...+
T Consensus        88 sIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          88 CVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999887765

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.42  E-value=0.037  Score=44.32  Aligned_cols=23  Identities=30%  Similarity=0.564  Sum_probs=20.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|.|.||||||+-.|.|...+
T Consensus       127 sIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         127 SLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHH
Confidence            67899999999999999987766

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=92.36  E-value=0.038  Score=44.20  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      .+.|.|.||||||+-.|.|...+
T Consensus        93 ~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          93 SILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            57899999999999999987776

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.28  E-value=0.018  Score=39.44  Aligned_cols=20  Identities=30%  Similarity=0.434  Sum_probs=15.4

Q ss_pred             eeEEEECCCCCcHHHHHHHH
Q 032336            3 FGQVVIGPPGSGKTTYCNGM   22 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l   22 (143)
                      ..+.|+.|.|+|||+..-+.
T Consensus        59 ~~~~i~apTGsGKT~~~~~~   78 (237)
T d1gkub1          59 ESFAATAPTGVGKTSFGLAM   78 (237)
T ss_dssp             CCEECCCCBTSCSHHHHHHH
T ss_pred             CCEEEEecCCChHHHHHHHH
Confidence            45778999999999865433

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=92.11  E-value=0.035  Score=40.14  Aligned_cols=15  Identities=47%  Similarity=0.711  Sum_probs=13.0

Q ss_pred             EEEECCCCCcHHHHH
Q 032336            5 QVVIGPPGSGKTTYC   19 (143)
Q Consensus         5 ~~liGpnGaGKSTLl   19 (143)
                      ..+.|.||+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (313)
T d2olra1          17 AVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            458899999999974

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=92.04  E-value=0.031  Score=40.57  Aligned_cols=15  Identities=47%  Similarity=0.711  Sum_probs=13.0

Q ss_pred             EEEECCCCCcHHHHH
Q 032336            5 QVVIGPPGSGKTTYC   19 (143)
Q Consensus         5 ~~liGpnGaGKSTLl   19 (143)
                      ..+.|.||+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            468899999999974

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.67  E-value=0.046  Score=44.27  Aligned_cols=23  Identities=26%  Similarity=0.534  Sum_probs=20.2

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      ++.|.|.||||||+-.|.|...+
T Consensus       125 sIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         125 SILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999998887766

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=91.49  E-value=0.036  Score=44.94  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336            3 FGQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      -.+.|.|.||||||.-.|.|...+.
T Consensus       122 Q~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         122 QSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3678999999999999888877663

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.25  E-value=0.028  Score=34.37  Aligned_cols=17  Identities=35%  Similarity=0.401  Sum_probs=12.9

Q ss_pred             eeEEEECCCCCcHHHHH
Q 032336            3 FGQVVIGPPGSGKTTYC   19 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl   19 (143)
                      ..+.|..|.|||||+..
T Consensus         8 ~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             CEEEECCCTTSSTTTTH
T ss_pred             CcEEEEcCCCCChhHHH
Confidence            34567789999999543

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.11  E-value=0.053  Score=39.33  Aligned_cols=15  Identities=47%  Similarity=0.716  Sum_probs=13.2

Q ss_pred             EEEECCCCCcHHHHH
Q 032336            5 QVVIGPPGSGKTTYC   19 (143)
Q Consensus         5 ~~liGpnGaGKSTLl   19 (143)
                      ..+.|-||+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            458899999999986

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=91.01  E-value=0.033  Score=44.67  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=20.8

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      .+.|.|.||||||+-.|.+...+.
T Consensus        96 ~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          96 SIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            577999999999999999887663

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.73  E-value=0.078  Score=35.49  Aligned_cols=35  Identities=29%  Similarity=0.296  Sum_probs=25.9

Q ss_pred             CeeeEEEE-CCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336            1 MVFGQVVI-GPPGSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         1 ~~~~~~li-GpnGaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      |+..+++. +.-|+||||+--.|+..+.-.+-.|.+
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~Vll   36 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLA   36 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEE
Confidence            78889999 678999999988887776533334433

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.48  E-value=0.09  Score=34.42  Aligned_cols=18  Identities=28%  Similarity=0.390  Sum_probs=13.3

Q ss_pred             EEEECCCCCcHHHHHHHH
Q 032336            5 QVVIGPPGSGKTTYCNGM   22 (143)
Q Consensus         5 ~~liGpnGaGKSTLl~~l   22 (143)
                      +-|.+|.|+|||...-.+
T Consensus        26 ~lv~~pTGsGKT~i~~~~   43 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMI   43 (200)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHH
Confidence            458899999999754333

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.48  E-value=0.06  Score=38.39  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=17.1

Q ss_pred             eeEEEECCCCCcHHHHHHHHh
Q 032336            3 FGQVVIGPPGSGKTTYCNGMS   23 (143)
Q Consensus         3 ~~~~liGpnGaGKSTLl~~l~   23 (143)
                      -.++|+|+.|+|||||+.-+.
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHH
Confidence            457899999999999986443

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=89.43  E-value=0.057  Score=37.66  Aligned_cols=14  Identities=36%  Similarity=0.446  Sum_probs=12.3

Q ss_pred             eEEEECCCCCcHHH
Q 032336            4 GQVVIGPPGSGKTT   17 (143)
Q Consensus         4 ~~~liGpnGaGKST   17 (143)
                      .+.|.+|.|||||+
T Consensus        11 ~~lv~~~TGsGKT~   24 (305)
T d2bmfa2          11 LTIMDLHPGAGKTK   24 (305)
T ss_dssp             EEEECCCTTSSTTT
T ss_pred             cEEEEECCCCCHHH
Confidence            46789999999997

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.41  E-value=0.071  Score=35.32  Aligned_cols=15  Identities=27%  Similarity=0.410  Sum_probs=12.9

Q ss_pred             eEEEECCCCCcHHHH
Q 032336            4 GQVVIGPPGSGKTTY   18 (143)
Q Consensus         4 ~~~liGpnGaGKSTL   18 (143)
                      .+.|..|.|||||+.
T Consensus        42 ~~il~apTGsGKT~~   56 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLL   56 (202)
T ss_dssp             CEEEECSSHHHHHHH
T ss_pred             CEEEEcCCCCchhHH
Confidence            467899999999986

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.20  E-value=0.21  Score=31.57  Aligned_cols=19  Identities=32%  Similarity=0.422  Sum_probs=16.1

Q ss_pred             CeeeEEEECCCCCcHHHHH
Q 032336            1 MVFGQVVIGPPGSGKTTYC   19 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl   19 (143)
                      +++...|+||=-|||||-|
T Consensus         6 ~G~l~lI~GpMfSGKTteL   24 (141)
T d1xx6a1           6 HGWVEVIVGPMYSGKSEEL   24 (141)
T ss_dssp             CCEEEEEECSTTSSHHHHH
T ss_pred             ceeEEEEEeccccHHHHHH
Confidence            3567789999999999965

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=86.69  E-value=0.18  Score=33.05  Aligned_cols=32  Identities=22%  Similarity=0.150  Sum_probs=23.3

Q ss_pred             eEEEECCC-CCcHHHHHHHHhCCcccCCceEEE
Q 032336            4 GQVVIGPP-GSGKTTYCNGMSQFLSLIGSNICC   35 (143)
Q Consensus         4 ~~~liGpn-GaGKSTLl~~l~g~~~~~~G~i~~   35 (143)
                      .+-|.|-+ |.||||+.-.|+..+.-..=+|.+
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~   35 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG   35 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence            46688886 999999988888777544334543

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.27  E-value=0.25  Score=30.86  Aligned_cols=20  Identities=40%  Similarity=0.282  Sum_probs=15.7

Q ss_pred             eeeEEEECCCCCcHHHHHHH
Q 032336            2 VFGQVVIGPPGSGKTTYCNG   21 (143)
Q Consensus         2 ~~~~~liGpnGaGKSTLl~~   21 (143)
                      +....|+||=.|||||-|=-
T Consensus         2 G~L~li~GpMfsGKTt~Li~   21 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMR   21 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHH
T ss_pred             cEEEEEEecccCHHHHHHHH
Confidence            34567999999999996633

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.30  E-value=0.41  Score=33.13  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=19.4

Q ss_pred             CeeeEEEECCCCCcHHHHHHHHhCCc
Q 032336            1 MVFGQVVIGPPGSGKTTYCNGMSQFL   26 (143)
Q Consensus         1 ~~~~~~liGpnGaGKSTLl~~l~g~~   26 (143)
                      || .++|.|.=|.||||+.-.|+..+
T Consensus         2 Mr-~IaisgKGGVGKTT~a~NLA~~L   26 (289)
T d2afhe1           2 MR-QCAIYGKGGIGKSTTTQNLVAAL   26 (289)
T ss_dssp             CE-EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cc-EEEEECCCCCCHHHHHHHHHHHH
Confidence            55 56789999999999876665544

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.26  E-value=0.37  Score=32.91  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=19.7

Q ss_pred             eEEEECCCCCcHHHHHHHHhCCcc
Q 032336            4 GQVVIGPPGSGKTTYCNGMSQFLS   27 (143)
Q Consensus         4 ~~~liGpnGaGKSTLl~~l~g~~~   27 (143)
                      .+||.|.=|+||||+.-.|+..+.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA   26 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLH   26 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHH
Confidence            467899999999999877776664