Citrus Sinensis ID: 032352

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
METVPTATAATAEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFCLTRTIRMMRNSLVS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
metvptataataedfsssssstsptaaISRWKYNVSRRYQHlldksvphvLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMgflspqidpeysdgptlptrgsdefrpfvrrlpefkFCLTRTIRMMRNSLVS
Flexible Loop (DISEMBL)
metvptataataedfsssssstsptaAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTlptrgsdefrpfvrrlpefkfcltrtirmmrnslvs
Low Complexity Region (SEG)
METVPtataataedfsssssstsptaaisRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFCLTRTIRMMRNSLVS
Disordered region (IsUnstruct)
**************************AISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQI*****************FRPFVRRLPEFKFCLTRTIRM*******
Disordered Region (DISOPRED)
******************************WKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQI********************FVRRLPEFKFCLTRTIRMMRNSLVS
Disordered Region (DISEMBL)
***************************ISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFCLTRTIRMMRNSLVS
Disordered Region (DISPRO)
************************TAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDP****GPTLPTRGSDEFRPFVRRLPEFKFCLTRTIRMMRNSLVS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
METVPTATAATAEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFCLTRTIRMMRNSLVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q9ZWI7	212	Protein RER1C OS=Arabidop	yes	no	0.830	0.556	0.65	1e-36
O48670	191	Protein RER1A OS=Arabidop	no	no	0.823	0.612	0.583	8e-35
O48671	195	Protein RER1B OS=Arabidop	no	no	0.823	0.6	0.563	2e-32
A5PJ65	196	Protein RER1 OS=Bos tauru	yes	no	0.816	0.591	0.508	8e-29
Q5ZHM5	196	Protein RER1 OS=Gallus ga	yes	no	0.852	0.617	0.488	3e-28
Q9ZPV7	221	Protein RER1D OS=Arabidop	no	no	0.823	0.529	0.462	8e-28
Q5R5U4	196	Protein RER1 OS=Pongo abe	yes	no	0.816	0.591	0.491	9e-28
O15258	196	Protein RER1 OS=Homo sapi	yes	no	0.816	0.591	0.491	9e-28
Q498C8	196	Protein RER1 OS=Rattus no	yes	no	0.816	0.591	0.491	9e-28
Q9CQU3	196	Protein RER1 OS=Mus muscu	yes	no	0.816	0.591	0.491	9e-28

>sp|Q9ZWI7|RER1C_ARATH Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/120 (65%), Positives = 94/120 (78%), Gaps = 2/120 (1%)

Query: 13  EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
           +D   SS S+SP  A++R  +  S+R QHLLDK+VPHVL+RW+ CL VV IY VRVY V+
Sbjct: 22  DDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVE 81

Query: 73  GFYIITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFCLT 130
           GFYIITY +GIYLLNL++ FLSPQ DPE S   G +LPTR SDE+RPFVRRLPEFKF L+
Sbjct: 82  GFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLS 141

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1

 Score =  145 bits (366), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 70/120 (58%), Positives = 84/120 (70%), Gaps = 3/120 (2%)

Query: 16  SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
            S   S S    + +  +   R YQH LDK+ PH  +RW+  L V  IY +RVY +QGFY
Sbjct: 3   ESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFY 62

Query: 76  IITYGLGIYLLNLLMGFLSPQIDPE---YSDGPTLPTRGSDEFRPFVRRLPEFKFCLTRT 132
           II YGLGIYLLNLL+GFLSP +DPE    SDGP+LPTRGSDEF+PF+RRLPEFKF  + T
Sbjct: 63  IIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMT 122

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/119 (56%), Positives = 82/119 (68%), Gaps = 2/119 (1%)

Query: 16  SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
            S   S S    + +  +   R YQ+ LDK+ PH  +RW+  L    IY +RVY + GFY
Sbjct: 3   GSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFY 62

Query: 76  IITYGLGIYLLNLLMGFLSPQIDPEY--SDGPTLPTRGSDEFRPFVRRLPEFKFCLTRT 132
           II+YGLGIYLLNLL+GFLSP +DPE   SDG TLPTRGSDEF+PF+RRLPEFKF  + T
Sbjct: 63  IISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMT 121

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2

 Score =  125 bits (314), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 81/120 (67%), Gaps = 4/120 (3%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS PH   RWVV L +  IY +RVYL+
Sbjct: 2   SEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Bos taurus (taxid: 9913)

>sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 4/125 (3%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RW+V L +  IY +RVYL+
Sbjct: 2   SEGDSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPTR ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKF 121

Query: 128 CLTRT 132
             + T
Sbjct: 122 WHSAT 126

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Gallus gallus (taxid: 9031)

>sp|Q9ZPV7|RER1D_ARATH Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 81/119 (68%), Gaps = 2/119 (1%)

Query: 16  SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
           S + + T   + +++W+   S+ +Q+ LD+S P+++ RW+V L    IY  RVY V G++
Sbjct: 7   SENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYF 66

Query: 76  IITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFCLTRT 132
           +I+YGL  Y+LNLL+GFLSP++DPE    D  +LP   SDE++PFVRRLPEFKF    T
Sbjct: 67  VISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAAT 125

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1

 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 4/120 (3%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+
Sbjct: 2   SEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Pongo abelii (taxid: 9601)

>sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1

 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 4/120 (3%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+
Sbjct: 2   SEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Homo sapiens (taxid: 9606)

>sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1

 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 4/120 (3%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+
Sbjct: 2   SEGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1

 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 4/120 (3%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+
Sbjct: 2   SEGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
255567873	206	rer1 protein, putative [Ricinus communis	0.795	0.548	0.782	6e-47
224084390	204	predicted protein [Populus trichocarpa]	0.739	0.514	0.809	3e-46
356496931	191	PREDICTED: protein RER1A-like [Glycine m	0.816	0.607	0.698	2e-44
224094278	200	predicted protein [Populus trichocarpa]	0.774	0.55	0.736	6e-43
388502768	191	unknown [Lotus japonicus]	0.802	0.596	0.704	2e-42
388509732	192	unknown [Medicago truncatula]	0.809	0.598	0.669	6e-42
225438813	204	PREDICTED: protein RER1A [Vitis vinifera	0.725	0.504	0.707	3e-39
356511897	198	PREDICTED: protein RER1A-like [Glycine m	0.838	0.601	0.617	7e-38
27817215	140	putative endoplasmic reticulum retrieval	0.873	0.885	0.656	1e-36
297821587	211	ATRER1C1 [Arabidopsis lyrata subsp. lyra	0.802	0.540	0.663	2e-36

>gi|255567873|ref|XP_002524914.1| rer1 protein, putative [Ricinus communis] gi|223535749|gb|EEF37411.1| rer1 protein, putative [Ricinus communis]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 98/115 (85%), Gaps = 2/115 (1%)

Query: 13  EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
           ED SS SS+  P   ISRW + VS+RYQHLLDK+VPHVL RW+ CL V  IYA+RVY VQ
Sbjct: 16  EDLSSLSST--PATVISRWTFTVSQRYQHLLDKTVPHVLRRWIACLVVALIYALRVYFVQ 73

Query: 73  GFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           GFYIITYGLGIY+LNLL+GFLSPQIDPE  DGPTLPTRGSDEFRPFVRRLPEFKF
Sbjct: 74  GFYIITYGLGIYMLNLLIGFLSPQIDPEVLDGPTLPTRGSDEFRPFVRRLPEFKF 128

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084390|ref|XP_002307281.1| predicted protein [Populus trichocarpa] gi|118482911|gb|ABK93369.1| unknown [Populus trichocarpa] gi|222856730|gb|EEE94277.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/105 (80%), Positives = 94/105 (89%)

Query: 23  SPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLG 82
           +P   ISRW + VSRRYQH LDK+VPH+L+RW+ CL VV IYA+RVYLVQGFYI+TYGLG
Sbjct: 21  TPATTISRWSFAVSRRYQHFLDKTVPHILYRWISCLVVVLIYAIRVYLVQGFYIVTYGLG 80

Query: 83  IYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           IYLLNLL+GFLSPQIDPE  DGPTLPTRGSDEFRPFVRRLPEFKF
Sbjct: 81  IYLLNLLIGFLSPQIDPEIHDGPTLPTRGSDEFRPFVRRLPEFKF 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496931|ref|XP_003517318.1| PREDICTED: protein RER1A-like [Glycine max]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/116 (69%), Positives = 97/116 (83%)

Query: 17  SSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYI 76
            +    SP A ISRWK+ VS++YQH+LDK+ PHVL RW+ CL V ++Y +RVYLVQGFYI
Sbjct: 4   GAGDDHSPEAVISRWKFAVSQQYQHMLDKTTPHVLRRWIGCLVVAAVYVLRVYLVQGFYI 63

Query: 77  ITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFCLTRT 132
           ++Y LGIY+LNLL+GFLSPQ+DPE SDGPTLPTRGSDEFRPFVRRLPEFKF  + T
Sbjct: 64  VSYALGIYILNLLIGFLSPQVDPEISDGPTLPTRGSDEFRPFVRRLPEFKFWYSIT 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094278|ref|XP_002310121.1| predicted protein [Populus trichocarpa] gi|222853024|gb|EEE90571.1| predicted protein [Populus trichocarpa]

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 81/110 (73%), Positives = 94/110 (85%)

Query: 23  SPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLG 82
           +P   ISRW + VS+R+QH LDK+VP++L+RW+ CL VV IY +RVYLVQGFYIITYGLG
Sbjct: 21  TPATTISRWSFVVSQRFQHFLDKTVPYILYRWIACLIVVLIYVIRVYLVQGFYIITYGLG 80

Query: 83  IYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFCLTRT 132
           IYLLNLL+GFLSPQIDPE  DGP+LPTRGSDEFRPFVRRL EFKF  + T
Sbjct: 81  IYLLNLLIGFLSPQIDPEIHDGPSLPTRGSDEFRPFVRRLLEFKFWYSIT 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502768|gb|AFK39450.1| unknown [Lotus japonicus]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 94/115 (81%), Gaps = 1/115 (0%)

Query: 19  SSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIIT 78
               SP  AISRWK  +S++YQH+LDK+ PHVL RWV CL V SIY +RVYLV+GFYI++
Sbjct: 4   GGEVSPETAISRWKLGLSQQYQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVEGFYIVS 63

Query: 79  YGLGIYLLNLLMGFLSPQIDPE-YSDGPTLPTRGSDEFRPFVRRLPEFKFCLTRT 132
           Y LGIY+LNLL+GFLSPQ+DPE Y DGPTLPT GSDEFRPFVRRLPEFKF  + T
Sbjct: 64  YALGIYILNLLIGFLSPQVDPEVYDDGPTLPTSGSDEFRPFVRRLPEFKFWYSIT 118

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509732|gb|AFK42932.1| unknown [Medicago truncatula]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 96/118 (81%), Gaps = 3/118 (2%)

Query: 18  SSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYII 77
           ++  TSP AAI+RWK+  SRRYQH+LDKS PHV  RW+ CL V  +Y +RVY+VQGFY++
Sbjct: 2   NTEDTSPAAAITRWKFEASRRYQHILDKSTPHVSQRWLGCLVVALVYVLRVYIVQGFYVV 61

Query: 78  TYGLGIYLLNLLMGFLSPQIDPEYSD---GPTLPTRGSDEFRPFVRRLPEFKFCLTRT 132
           +YGLGIY+LNLL+GFLSPQ+DPE  D   GP+LPT GSDEFRPFVRRLPEFKF  + T
Sbjct: 62  SYGLGIYILNLLIGFLSPQVDPEILDADNGPSLPTSGSDEFRPFVRRLPEFKFWYSIT 119

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438813|ref|XP_002283333.1| PREDICTED: protein RER1A [Vitis vinifera] gi|296082366|emb|CBI21371.3| unnamed protein product [Vitis vinifera]

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/106 (70%), Positives = 89/106 (83%), Gaps = 3/106 (2%)

Query: 30  RWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLL 89
           RW +++SR+YQHLLDKS PH+L+RW+   A+  IY VRVY VQGFYI++YGLGIY+LNLL
Sbjct: 25  RWTHDISRKYQHLLDKSTPHILNRWIGFFAIAFIYIVRVYFVQGFYIVSYGLGIYILNLL 84

Query: 90  MGFLSPQIDPEYS---DGPTLPTRGSDEFRPFVRRLPEFKFCLTRT 132
           +GFLSPQ+DPE     DGPTLPTRGSDEFRPFVRRLPEFKF  + T
Sbjct: 85  IGFLSPQVDPEIQELVDGPTLPTRGSDEFRPFVRRLPEFKFWYSIT 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511897|ref|XP_003524658.1| PREDICTED: protein RER1A-like [Glycine max]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 94/123 (76%), Gaps = 4/123 (3%)

Query: 14  DFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQG 73
           D      ++SPTA +SRWK+   R++QHLLDKS PHV  RW+   AV  +YA+RVYLVQG
Sbjct: 3   DTGGGGGASSPTATMSRWKFAAWRQFQHLLDKSTPHVGRRWLGFAAVALLYALRVYLVQG 62

Query: 74  FYIITYGLGIYLLNLLMGFLSPQIDPEY----SDGPTLPTRGSDEFRPFVRRLPEFKFCL 129
           FY+++YGLGIY+LNLL+GFLSPQ+DPE     +D PTLP+  SDEFRPFVRRLPEFKF  
Sbjct: 63  FYVVSYGLGIYILNLLIGFLSPQVDPETVILDADVPTLPSTASDEFRPFVRRLPEFKFWY 122

Query: 130 TRT 132
           + T
Sbjct: 123 SIT 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27817215|gb|AAO23327.1| putative endoplasmic reticulum retrieval protein [Capsella rubella]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/128 (65%), Positives = 99/128 (77%), Gaps = 4/128 (3%)

Query: 4   VPTATAATAED--FSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVV 61
           VP AT+ T  D    SS SS+SP  A++R  + V++R QHLLDK+VPHVL+RW+ CL VV
Sbjct: 10  VPPATSVTTADDNLQSSDSSSSPADAVNRLIHAVTQRQQHLLDKTVPHVLYRWIACLCVV 69

Query: 62  SIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFV 119
            IY VRVY V+GFYIITY +GIYLLNL++ FLSPQ DPE S   G TLPTR SDE+RPFV
Sbjct: 70  LIYFVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPEASLTTGGTLPTRRSDEYRPFV 129

Query: 120 RRLPEFKF 127
           RRLPEFKF
Sbjct: 130 RRLPEFKF 137

Source: Capsella rubella

Species: Capsella rubella

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821587|ref|XP_002878676.1| ATRER1C1 [Arabidopsis lyrata subsp. lyrata] gi|297324515|gb|EFH54935.1| ATRER1C1 [Arabidopsis lyrata subsp. lyrata]

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 92/116 (79%), Gaps = 2/116 (1%)

Query: 17  SSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYI 76
            S  S+SP  A++R  + VS+R QHLLDK+VPHVL+RW+ CL VV IY VRVY V+GFYI
Sbjct: 25  QSIDSSSPADAVNRLIHAVSQRQQHLLDKTVPHVLYRWIACLCVVLIYFVRVYFVEGFYI 84

Query: 77  ITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFCLT 130
           ITY +GIYLLNL++ FLSPQ DPE S   G +LPTR SDE+RPFVRRLPEFKF L+
Sbjct: 85  ITYAIGIYLLNLIIAFLSPQEDPEASLTTGGSLPTRRSDEYRPFVRRLPEFKFWLS 140

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2058583	212	ATRER1C1 "AT2G23310" [Arabidop	0.669	0.448	0.721	1.2e-33
TAIR|locus:2136373	191	ATRER1A "AT4G39220" [Arabidops	0.676	0.502	0.676	8.5e-33
TAIR|locus:2049354	195	RER1B "AT2G21600" [Arabidopsis	0.676	0.492	0.653	1.1e-30
UNIPROTKB|A5PJ65	196	RER1 "Protein RER1" [Bos tauru	0.626	0.454	0.612	3.5e-27
UNIPROTKB|Q5ZHM5	196	RER1 "Protein RER1" [Gallus ga	0.626	0.454	0.602	9.4e-27
UNIPROTKB|E2R2Q8	158	RER1 "Uncharacterized protein"	0.626	0.563	0.591	1.9e-26
UNIPROTKB|F6XF58	196	RER1 "Uncharacterized protein"	0.626	0.454	0.591	1.9e-26
UNIPROTKB|O15258	196	RER1 "Protein RER1" [Homo sapi	0.626	0.454	0.591	1.9e-26
UNIPROTKB|Q5T091	187	RER1 "Protein RER1" [Homo sapi	0.626	0.475	0.591	1.9e-26
UNIPROTKB|Q5T092	158	RER1 "Protein RER1" [Homo sapi	0.626	0.563	0.591	1.9e-26

TAIR|locus:2058583 ATRER1C1 "AT2G23310" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 70/97 (72%), Positives = 81/97 (83%)

Query:    36 SRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSP 95
             S+R QHLLDK+VPHVL+RW+ CL VV IY VRVY V+GFYIITY +GIYLLNL++ FLSP
Sbjct:    45 SQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSP 104

Query:    96 QIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFCLT 130
             Q DPE S   G +LPTR SDE+RPFVRRLPEFKF L+
Sbjct:   105 QEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLS 141

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=NAS

GO:0045185 "maintenance of protein location" evidence=IGI

TAIR|locus:2136373 ATRER1A "AT4G39220" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 67/99 (67%), Positives = 78/99 (78%)

Query:    37 RRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQ 96
             R YQH LDK+ PH  +RW+  L V  IY +RVY +QGFYII YGLGIYLLNLL+GFLSP 
Sbjct:    24 RIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPL 83

Query:    97 IDPE---YSDGPTLPTRGSDEFRPFVRRLPEFKFCLTRT 132
             +DPE    SDGP+LPTRGSDEF+PF+RRLPEFKF  + T
Sbjct:    84 VDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMT 122

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2049354 RER1B "AT2G21600" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 64/98 (65%), Positives = 76/98 (77%)

Query:    37 RRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQ 96
             R YQ+ LDK+ PH  +RW+  L    IY +RVY + GFYII+YGLGIYLLNLL+GFLSP 
Sbjct:    24 RVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPL 83

Query:    97 IDPEY--SDGPTLPTRGSDEFRPFVRRLPEFKFCLTRT 132
             +DPE   SDG TLPTRGSDEF+PF+RRLPEFKF  + T
Sbjct:    84 VDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMT 121

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

UNIPROTKB|A5PJ65 RER1 "Protein RER1" [Bos taurus (taxid:9913)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 57/93 (61%), Positives = 71/93 (76%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS PH   RWVV L +  IY +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

UNIPROTKB|Q5ZHM5 RER1 "Protein RER1" [Gallus gallus (taxid:9031)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 56/93 (60%), Positives = 71/93 (76%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RW+V L +  IY +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
             P    +  DGP+LPTR ++EFRPF+RRLPEFKF
Sbjct:    89 PSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKF 121

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

UNIPROTKB|E2R2Q8 RER1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 55/93 (59%), Positives = 71/93 (76%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

UNIPROTKB|F6XF58 RER1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 55/93 (59%), Positives = 71/93 (76%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O15258 RER1 "Protein RER1" [Homo sapiens (taxid:9606)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 55/93 (59%), Positives = 71/93 (76%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

GO:0030173 "integral to Golgi membrane" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5T091 RER1 "Protein RER1" [Homo sapiens (taxid:9606)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 55/93 (59%), Positives = 71/93 (76%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5T092 RER1 "Protein RER1" [Homo sapiens (taxid:9606)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 55/93 (59%), Positives = 71/93 (76%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.4112.1 hypothetical protein (168 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam03248	175	pfam03248, Rer1, Rer1 family	1e-49
COG5249	180	COG5249, RER1, Golgi protein involved in Golgi-to-	5e-28

>gnl|CDD|202582 pfam03248, Rer1, Rer1 family

 Score =  156 bits (396), Expect = 1e-49
 Identities = 55/116 (47%), Positives = 75/116 (64%), Gaps = 9/116 (7%)

Query: 27  AISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLL 86
           A++R+   +SR YQ  LDK+ PH  +RW+  L ++ ++ +RV L QG+Y++ Y LGIYLL
Sbjct: 2   AVTRFTNKLSRTYQRYLDKTTPHTAYRWIFFLFLLFLFILRVILAQGWYVVCYALGIYLL 61

Query: 87  NLLMGFLSPQIDPEYSD-------GPTLPTRGSDEFRPFVRRLPEFKF--CLTRTI 133
           NL + FL+P+ DP           GP+LPT   DEFRPF+RRLPEFKF    TR  
Sbjct: 62  NLFLAFLTPKFDPSLEQEDEDVEEGPSLPTSNDDEFRPFIRRLPEFKFWYSATRAT 117

RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex. Length = 175

>gnl|CDD|227574 COG5249, RER1, Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

 Score =  101 bits (253), Expect = 5e-28
 Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 37  RRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQ 96
             YQH LD+  P    RW +   +  ++ +R++   G+Y+I Y LGIYLLN  + FL+P+
Sbjct: 20  TLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPK 79

Query: 97  IDPEYS---DGPTLP-TRGSDEFRPFVRRLPEFKF 127
            D  +    D   +      +EFRPF+RRLPEFKF
Sbjct: 80  FDMSFEQIEDDDEIEEGEKDNEFRPFIRRLPEFKF 114

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
KOG1688	188	consensus Golgi proteins involved in ER retention	100.0
PF03248	176	Rer1: Rer1 family; InterPro: IPR004932 RER1 family	100.0
COG5249	180	RER1 Golgi protein involved in Golgi-to-ER retriev	100.0

>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-59  Score=372.83  Aligned_cols=130  Identities=55%  Similarity=0.970  Sum_probs=124.6

Q ss_pred             cccCCCCCCCCCchhHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhhheeccEEEehhhHHHHHHHHHHh
Q 032352           12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMG   91 (142)
Q Consensus        12 ~~m~~~~~~~~~~~~~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~yiVtY~LgIylLnlfi~   91 (142)
                      +++++.+++++++++|+.++.++++++||+||||+|||+..||+++++++++|++||+..|||||||||||||+||+||+
T Consensus         1 ~e~~~~~~~~~~~a~~v~~~~~~~~~~yQ~yLDr~tPh~~~RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlfia   80 (188)
T KOG1688|consen    1 MEDDSSGEDSGGVASPVKRFFHELSQLYQHYLDRSTPHTAVRWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLFIA   80 (188)
T ss_pred             CCccccCCCCCCcchHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            46777778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCC---CCCCCCCCCCCCCCCCcccCCcchhhHhHhHHHHhhhhcc
Q 032352           92 FLSPQIDPEY---SDGPTLPTRGSDEFRPFVRRLPEFKFCLTRTIRMMRNSLV  141 (142)
Q Consensus        92 FLtPk~Dp~l---~eg~~LP~~~~dEFrPFiRRLPEFkFW~~~trat~i~l~~  141 (142)
                      |||||+||++   +||+.||++++||||||||||||||||+++|||+++|++.
T Consensus        81 FLtPk~Dp~~~~~~dg~~Lpt~~~dEFrPFIRRLPEFKFW~s~~ka~~ia~~~  133 (188)
T KOG1688|consen   81 FLTPKVDPELQDADDGPSLPTRKSDEFRPFIRRLPEFKFWYSSTKATLIALLC  133 (188)
T ss_pred             HhCCCCCchhhcccCCCCCCCCCccccchHHHcCchhHHHHHHHHHHHHHHHH
Confidence            9999999997   7899999999999999999999999999999999999864

>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment

Probab=100.00  E-value=2.4e-54  Score=343.17  Aligned_cols=115  Identities=49%  Similarity=0.941  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhhheeccEEEehhhHHHHHHHHHHhhcCCCCCCCC------
Q 032352           28 ISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEY------  101 (142)
Q Consensus        28 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~yiVtY~LgIylLnlfi~FLtPk~Dp~l------  101 (142)
                      ++++.++++++||++|||||||++.||+++++|+++|++||+..|||||||||||||+||+||+|||||+||++      
T Consensus         2 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FltP~~Dp~l~~~~~~   81 (176)
T PF03248_consen    2 VSRFFQKLKRTYQSYLDKSTPYTKYRWIAFLVLLFLFLLRVYYLQGWYIVTYALGIYLLNLFIAFLTPKFDPELEQDEED   81 (176)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhcceeeehHHHHHHHHHHHHHHhCCcCcccccccccc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999987      


Q ss_pred             -CCCCCCCC--CCCCCCCCcccCCcchhhHhHhHHHHhhhhccC
Q 032352          102 -SDGPTLPT--RGSDEFRPFVRRLPEFKFCLTRTIRMMRNSLVS  142 (142)
Q Consensus       102 -~eg~~LP~--~~~dEFrPFiRRLPEFkFW~~~trat~i~l~~s  142 (142)
                       |||+.||+  +++||||||+|||||||||++||||+++|++.+
T Consensus        82 ~~~g~~Lp~~~~~~~EFrPFiRRlPEFkFW~~~tka~~i~~~~t  125 (176)
T PF03248_consen   82 EEEGPELPTTNENDDEFRPFIRRLPEFKFWYSCTKATVISLFCT  125 (176)
T ss_pred             ccccccCCCCcccccccCCccccchhhHHHHHHHHHHHHHHHHH
Confidence             35779999  899999999999999999999999999999753

The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane

>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

Probab=100.00  E-value=7.3e-47  Score=296.13  Aligned_cols=116  Identities=34%  Similarity=0.636  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhhheeccEEEehhhHHHHHHHHHHhhcCCCCCCCC---CC
Q 032352           27 AISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEY---SD  103 (142)
Q Consensus        27 ~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~yiVtY~LgIylLnlfi~FLtPk~Dp~l---~e  103 (142)
                      .+......+++.||+||||.+||+..||..+++|+++|+.||+..+|||+|||+|||||||+|++|||||+||+.   +|
T Consensus        10 n~~~k~n~~k~LyqhylDr~~P~~~~RW~i~ggL~~lf~iRI~~~~gwY~icY~LgiyLLn~flaFLTPKfdms~eq~e~   89 (180)
T COG5249          10 NLITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPKFDMSFEQIED   89 (180)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhCCCCcccHhhhcc
Confidence            355667889999999999999999999999999999999999999999999999999999999999999999988   33


Q ss_pred             -CCCCCCCCCCCCCCcccCCcchhhHhHhHHHHhhhhccC
Q 032352          104 -GPTLPTRGSDEFRPFVRRLPEFKFCLTRTIRMMRNSLVS  142 (142)
Q Consensus       104 -g~~LP~~~~dEFrPFiRRLPEFkFW~~~trat~i~l~~s  142 (142)
                       +....+++|+|||||||||||||||+++||||++||+.|
T Consensus        90 d~eieeg~kd~EFrPFIRrLPEFkFWy~s~rat~~aLi~s  129 (180)
T COG5249          90 DDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGS  129 (180)
T ss_pred             ccccccccccchhhHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence             334445689999999999999999999999999999865

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 28/125 (22%), Positives = 44/125 (35%), Gaps = 32/125 (25%)

Query: 32  KYNVSRRYQHL-----LDKSVPH---VLH------RWVVCLAVVSIYAVRVYLVQGFYII 77
           KYNVSR   +L     L +  P    ++       +  V L V   Y V+  +    + +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 78  TYG-------LGIYLLNLLMGFLSPQIDPEY---SDGPTLPTRGSDEFRPFVRRL---PE 124
                     +   L  LL      QIDP +   SD  +         +  +RRL     
Sbjct: 188 NLKNCNSPETVLEMLQKLLY-----QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 125 FKFCL 129
           ++ CL
Sbjct: 243 YENCL 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00