Citrus Sinensis ID: 032364

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MAVASLQIGKPSLLSSVSISQSNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQEGDKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSMALNSEGLEVAGRRK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEEEEEEEEcccEEEEEEcccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHcccccEEccccc
Coil and Loop (DISEMBL)
mavaslqigkpsllssvsisqsnfpgkldsgkvflrsrCLIRRKFKvccgvqegdkqsngeeppesLFMKELKrrgmtptslledssrtdsglddktklkeedigfsrrntvsTEIDKSLADQRERSMALNseglevagrrk
Flexible Loop (DISEMBL)
mavaslqigkpsllssvsisqsnfpgkldsgkvFLRSRCLIRRKFKVCCgvqegdkqsngeeppeSLFMKELKRRGmtptslledssrtdsglddktklkeedigfsrrntvsteidksladqrersmalnseglevagrrk
Low Complexity Region (SEG)
MAVASLQIGKPsllssvsisqsNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQEGDKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSMALNSEGLEVAGRRK
Disordered region (IsUnstruct)
****************************DSGKVFLRSRCLIRRKFKVCCGV*******************************************************************************************
Disordered Region (DISOPRED)
*********************************FLRSRCLIRR************************FMKELKR*******************************************************LNSEG*EV*****
Disordered Region (DISEMBL)
MAVASLQIGKPSLLSSVSISQSNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQ***********PESLFMKELKRRG******************DKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSMALNSEGLEVAGRRK
Disordered Region (DISPRO)
***********SLLSSVSISQSNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQ*********EPP*SLF*KELKRRG**P***************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVASLQIGKPSLLSSVSISQSNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQEGDKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSMALNSEGLEVAGRRK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
225429185	216	PREDICTED: uncharacterized protein LOC10	0.936	0.615	0.624	4e-37
255562188	216	conserved hypothetical protein [Ricinus	0.936	0.615	0.588	2e-35
351727323	217	uncharacterized protein LOC100305745 [Gl	0.845	0.552	0.518	7e-30
388522639	214	unknown [Medicago truncatula]	0.845	0.560	0.567	2e-29
356536075	217	PREDICTED: uncharacterized protein LOC10	0.845	0.552	0.525	5e-29
224105771	226	predicted protein [Populus trichocarpa]	0.936	0.588	0.543	8e-29
224060907	152	predicted protein [Populus trichocarpa]	0.542	0.506	0.766	1e-26
449465109	217	PREDICTED: uncharacterized protein LOC10	0.922	0.603	0.524	3e-26
388519125	215	unknown [Lotus japonicus]	0.866	0.572	0.507	5e-24
312282351	212	unnamed protein product [Thellungiella h	0.915	0.613	0.514	7e-20

>gi|225429185|ref|XP_002275810.1| PREDICTED: uncharacterized protein LOC100266884 [Vitis vinifera] gi|297736400|emb|CBI25123.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 101/141 (71%), Gaps = 8/141 (5%)

Query: 3   VASLQIGKPSLLSSVSISQSNFPGK-------LDSGKVFLRSRCLIRRKFKVCCGVQEGD 55
           +ASLQI K S    + ISQS    K        DS K    S    RR+ +VCCGVQEGD
Sbjct: 1   MASLQILKSSTFPPLPISQSKISRKSTCLFSEFDSRKRIRNSAFFTRRRLRVCCGVQEGD 60

Query: 56  KQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTE 115
            QSNGEEPPESLFMKELKRRGMTPTSLLEDS R   GL+++ KL EEDIGFS+RN  ST+
Sbjct: 61  NQSNGEEPPESLFMKELKRRGMTPTSLLEDSKRGAYGLEEEIKL-EEDIGFSKRNAYSTD 119

Query: 116 IDKSLADQRERSMALNSEGLE 136
            + +L++QRERSMALNSEGLE
Sbjct: 120 FEANLSNQRERSMALNSEGLE 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562188|ref|XP_002522102.1| conserved hypothetical protein [Ricinus communis] gi|223538701|gb|EEF40302.1| conserved hypothetical protein [Ricinus communis]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 102/141 (72%), Gaps = 8/141 (5%)

Query: 3   VASLQIGKPSLLSSVSISQSNFPGKLDSGKVFLR------SRCLIRRKFKVCCGVQEGDK 56
           +A+L + K S LS +SI Q NFPG  +  +  L+       R + ++KF VCC VQEGD 
Sbjct: 1   MAALYVLK-STLSPISIQQKNFPGNSNPRRTILKLENFTSRRYIQKQKFSVCCSVQEGDN 59

Query: 57  QSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKL-KEEDIGFSRRNTVSTE 115
           Q+N EE PESLFMKELKRRGMTPTSLLEDS++   GL+D+ K+ +EED GF +R  VSTE
Sbjct: 60  QNNAEEAPESLFMKELKRRGMTPTSLLEDSNKGSYGLEDEFKIGQEEDRGFFKRKVVSTE 119

Query: 116 IDKSLADQRERSMALNSEGLE 136
            DKSL +QRE SMALNSEGLE
Sbjct: 120 FDKSLTNQRETSMALNSEGLE 140

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727323|ref|NP_001236133.1| uncharacterized protein LOC100305745 [Glycine max] gi|255626505|gb|ACU13597.1| unknown [Glycine max]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 91/137 (66%), Gaps = 17/137 (12%)

Query: 14  LSSVSISQSNFPGKLDSGKVFLRSRCLIRRK--------------FKVCCGVQEGDKQSN 59
           LS +S+SQSNF  K           C + ++              F+VCC  QE + ++N
Sbjct: 8   LSQLSLSQSNFLRKSTWNN---HLPCYLHKRIAKLQTFTTSKSSTFRVCCSSQETNNKNN 64

Query: 60  GEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKS 119
           GEEPPESLFMKELKRRGMTPTSLL+D  ++D GLD++  + EED GF +R  VST +++S
Sbjct: 65  GEEPPESLFMKELKRRGMTPTSLLDDYKQSDYGLDEEVYVNEEDRGFPKRKAVSTNVERS 124

Query: 120 LADQRERSMALNSEGLE 136
           L +QRERSMALNSEGLE
Sbjct: 125 LDNQRERSMALNSEGLE 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522639|gb|AFK49381.1| unknown [Medicago truncatula]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/134 (56%), Positives = 93/134 (69%), Gaps = 14/134 (10%)

Query: 14  LSSVSISQSNFP--GKLD--SGKVFLRSRCLIRRKF------KVCCGV-QEGDKQSNGEE 62
           LS +S+SQSNFP    L+  + + F   R L   KF      +VCC   Q+   Q+NGEE
Sbjct: 8   LSQLSLSQSNFPRNSSLNHPTQQCFFHKRIL---KFQNSKSSRVCCSSSQDAKNQNNGEE 64

Query: 63  PPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLAD 122
           PPESLF+KELKRRGMTPTSLLED  +T+ G+D++  + EED GF  R TVST ID+ L +
Sbjct: 65  PPESLFLKELKRRGMTPTSLLEDYKQTNCGVDEEAFVNEEDRGFLNRKTVSTNIDRGLEN 124

Query: 123 QRERSMALNSEGLE 136
           QRERSMALNSEGLE
Sbjct: 125 QRERSMALNSEGLE 138

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536075|ref|XP_003536566.1| PREDICTED: uncharacterized protein LOC100797764 [Glycine max]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 90/137 (65%), Gaps = 17/137 (12%)

Query: 14  LSSVSISQSNFPGKLDSGKVFLRSRCLIRRK--------------FKVCCGVQEGDKQSN 59
           LS +S+SQSNF  K           C I ++              F+V C   E +KQ+N
Sbjct: 8   LSQLSLSQSNFLRKSTWNN---HLPCYIHKRIAKLQTFTSSKSSTFRVRCSSPETNKQNN 64

Query: 60  GEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKS 119
           GEEPPESLFMKELKRRGMTPTSLL+D  ++D GLD++  + EED GF +R  VST +++S
Sbjct: 65  GEEPPESLFMKELKRRGMTPTSLLDDYKQSDYGLDEEVYVNEEDRGFPKRKAVSTNVERS 124

Query: 120 LADQRERSMALNSEGLE 136
           L +QRERSMALNSEGLE
Sbjct: 125 LDNQRERSMALNSEGLE 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105771|ref|XP_002313927.1| predicted protein [Populus trichocarpa] gi|222850335|gb|EEE87882.1| predicted protein [Populus trichocarpa]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/151 (54%), Positives = 104/151 (68%), Gaps = 18/151 (11%)

Query: 3   VASLQIGKPSLLSSVSISQS-NFPGKLDSGKVFLRSRCLI---------RRKFKVCCGVQ 52
           +ASL I K S LS++S S S +F GK +  K   + R            ++K KV C VQ
Sbjct: 1   MASLHILK-STLSTLSTSPSKDFIGKSNYRKTIPKLRTFYGSSRRYSGRQQKVKVFCSVQ 59

Query: 53  EGDK-QSNG------EEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIG 105
           E D  Q NG      EEP ESLFMKELKRRGMTPTSLLE+++R + G++D+ K+ EED G
Sbjct: 60  EEDNNQRNGKFSYQREEPTESLFMKELKRRGMTPTSLLEETNRGNYGVEDEMKIGEEDRG 119

Query: 106 FSRRNTVSTEIDKSLADQRERSMALNSEGLE 136
           FS+RN VSTE+DKSL++QRE+SMALNSEG+E
Sbjct: 120 FSKRNPVSTELDKSLSNQREKSMALNSEGIE 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060907|ref|XP_002300286.1| predicted protein [Populus trichocarpa] gi|222847544|gb|EEE85091.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 71/77 (92%)

Query: 60  GEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKS 119
           GEEPPESLFMKELKRRGMTPTSLLE+++R + G++D+ K+ EED GFS+RN+VSTEID+ 
Sbjct: 1   GEEPPESLFMKELKRRGMTPTSLLEETNRGNYGVEDEMKIGEEDWGFSKRNSVSTEIDRG 60

Query: 120 LADQRERSMALNSEGLE 136
           L+DQRERSMALNSEGLE
Sbjct: 61  LSDQRERSMALNSEGLE 77

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465109|ref|XP_004150271.1| PREDICTED: uncharacterized protein LOC101221726 [Cucumis sativus] gi|449484408|ref|XP_004156874.1| PREDICTED: uncharacterized LOC101221726 [Cucumis sativus]

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 99/145 (68%), Gaps = 14/145 (9%)

Query: 3   VASLQIGKPSLLSSVSISQSNFPGK-------LDSGKVFLRSRCL----IRRKFKVCCGV 51
           +A+LQI K SL S  SIS SNF  +        DS  +  R R L    + R+F   C  
Sbjct: 1   MAALQILKSSL-SLPSISHSNFGSQSTRFVSDFDSLLLHGRRRSLRYACVYRRFTFRCAA 59

Query: 52  QEGDKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNT 111
           ++ DK++NGEEPPESLFMKELK+RG+TPTSLLED++ +D  L    ++  E+  FSRR+ 
Sbjct: 60  KDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGG--EMTGENRDFSRRSA 117

Query: 112 VSTEIDKSLADQRERSMALNSEGLE 136
           VSTE++KSL++QRERSM LNSEGLE
Sbjct: 118 VSTEVNKSLSNQRERSMQLNSEGLE 142

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519125|gb|AFK47624.1| unknown [Lotus japonicus]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/132 (50%), Positives = 85/132 (64%), Gaps = 9/132 (6%)

Query: 14  LSSVSISQSNF---PGK-LDSGKVFLRSRC-----LIRRKFKVCCGVQEGDKQSNGEEPP 64
           LS +S+S+SNF   P + +     FL  R          KF V C  Q    Q+NG+E P
Sbjct: 8   LSQLSLSKSNFSRHPTRNISPPDCFLVRRIGKFQTFTASKFMVSCTSQNSQNQNNGDEAP 67

Query: 65  ESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQR 124
           ESLFMKELKRRGM PTSLLED  ++ + LD++  + EED G  +R+ VST I++ L +QR
Sbjct: 68  ESLFMKELKRRGMNPTSLLEDYKQSSNVLDEEVYVNEEDRGSPKRSAVSTNIERGLENQR 127

Query: 125 ERSMALNSEGLE 136
           ERSMALNSEGLE
Sbjct: 128 ERSMALNSEGLE 139

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282351|dbj|BAJ34041.1| unnamed protein product [Thellungiella halophila]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 90/142 (63%), Gaps = 12/142 (8%)

Query: 1   MAVASLQIGKPSLLSSVSISQSNFPGKLDSGKVFLR---SRCLIR--RKFKVCCGVQEGD 55
           MA +SL+I K    S VSIS+   P KL+  K   R   SR   R  R  +VC   ++GD
Sbjct: 1   MASSSLEIVK-LCGSPVSISRHQSPVKLEPRKRVFRLADSRNWHRLGRCVRVCSSARDGD 59

Query: 56  KQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTE 115
            QS G+EPPESLFMKELKRRGMTPTSLL+D    +  +D+    KE   G S + T +T 
Sbjct: 60  NQSKGDEPPESLFMKELKRRGMTPTSLLQD---YEVDVDEVKTGKE--TGNSTKTTATTP 114

Query: 116 -IDKSLADQRERSMALNSEGLE 136
             D+SL +QRERS+ALNSEGLE
Sbjct: 115 AFDQSLLNQRERSLALNSEGLE 136

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2031010	209	AT1G50020 "AT1G50020" [Arabido	0.915	0.622	0.482	2.5e-19

TAIR|locus:2031010 AT1G50020 "AT1G50020" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 67/139 (48%), Positives = 81/139 (58%)

Query:     1 MAVASLQIGKPXXXXXXXXXXXNFPGKLDSGK-VFLRSRCLIRRKFKVCCG-VQEGDKQS 58
             MA +SL+I K            + P KL+  K VF         + +V    +  GD QS
Sbjct:     1 MASSSLEIVKLCGSPVSFPRHKS-PIKLECRKRVFRLPNSRSWHRLRVSSSALNGGDNQS 59

Query:    59 NGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTE-ID 117
              GEEPPESLFMKELKRRGMTPTSLL+D    D    D+ K  +E  G S + T +T   D
Sbjct:    60 KGEEPPESLFMKELKRRGMTPTSLLQDYE-VDQ---DEIKTGKET-GNSSKTTATTPAFD 114

Query:   118 KSLADQRERSMALNSEGLE 136
             KSL +QRERS+ALNSEGLE
Sbjct:   115 KSLLNQRERSLALNSEGLE 133


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.132   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142       131   0.00091  102 3  11 23  0.46    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  491 (52 KB)
  Total size of DFA:  102 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.71u 0.10s 15.81t   Elapsed:  00:00:01
  Total cpu time:  15.71u 0.10s 15.81t   Elapsed:  00:00:01
  Start:  Sat May 11 02:42:16 2013   End:  Sat May 11 02:42:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038612001 SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence; (216 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00