Citrus Sinensis ID: 032372

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MALAQVSASLSLSVSDAFAFSSAKTRTISRLPTSSHARIGTTFATGSPLLWRISPQRKCLQKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAALAVTALVGVLTAVFIFQSASEN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHEEEEEEccccHHHHccccccHHHHHHHHHHHHHHHHHHEEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccEcccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHHEEEEHHccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MALAQVSASLSLSVsdafafssaktrtisrlptssharigttfatgspllwrispqrkcLQKATSVTIRceqgtkgrnsLDVWLGRLAMVGFAVAISVEIStgkgllenfgltsplptAALAVTALVGVLTAVFIFQSASEN
Flexible Loop (DISEMBL)
MALAQVSASLSLSVSDAFAfssaktrtisrlptssharigttfatgspllwrispqRKCLQKATSvtirceqgtkgrnsldVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAALAVTALVGVLTAVFIFQSASEN
Low Complexity Region (SEG)
MalaqvsaslslsvsdafafssaKTRTISRLPTSSHARIGTTFATGSPLLWRISPQRKCLQKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFgltsplptaalavtalvgvltavFIFQSASEN
Disordered region (IsUnstruct)
************************************ARIGTTFATGSPLLWRISPQRKCLQKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAALAVTALVGVLTAVFIFQ*****
Disordered Region (DISOPRED)
*********************************************************************************VWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAALAVTALVGVLTAVFIFQSA***
Disordered Region (DISEMBL)
**********SLSVSDAFAFSSAKTRTISRLPTSSHARIGTTFATGSPLLWRISPQR*********TIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAALAVTALVGVLTAVFIFQSASEN
Disordered Region (DISPRO)
*****V*ASLSLSVSDAFAFSSAKTRTISRLPTSSHARIGTTFATGSPLLWRISPQRKCLQKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAALAVTALVGVLTAVFIFQSAS**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALAQVSASLSLSVSDAFAFSSAKTRTISRLPTSSHARIGTTFATGSPLLWRISPQRKCLQKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAALAVTALVGVLTAVFIFQSASEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
224105605	145	stress-enhanced protein 1 [Populus trich	0.992	0.972	0.692	3e-44
224060552	145	stress enhanced protein 1 [Populus trich	0.992	0.972	0.685	1e-43
351721648	142	uncharacterized protein LOC100306702 [Gl	1.0	1.0	0.654	2e-40
356575664	142	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.654	3e-40
225428894	148	PREDICTED: uncharacterized protein LOC10	0.873	0.837	0.744	1e-39
255638189	142	unknown [Glycine max]	1.0	1.0	0.647	1e-39
388496288	143	unknown [Lotus japonicus]	1.0	0.993	0.636	5e-39
225001266	144	putative stress enhanced protein [Arachi	0.985	0.972	0.609	1e-36
351722414	141	uncharacterized protein LOC100500418 [Gl	0.992	1.0	0.612	5e-36
18418396	146	stress enhanced protein 1 [Arabidopsis t	0.971	0.945	0.62	8e-36

>gi|224105605|ref|XP_002313869.1| stress-enhanced protein 1 [Populus trichocarpa] gi|222850277|gb|EEE87824.1| stress-enhanced protein 1 [Populus trichocarpa]

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/143 (69%), Positives = 116/143 (81%), Gaps = 2/143 (1%)

Query: 2   ALAQVSASLSLSVSDAFAFSSAKTR-TISRLPTSSHARIGTTFATGSPLLW-RISPQRKC 59
           ALAQVSASLSLS+ D  A   ++TR  ISRLPTSS AR GT FATGSPLL  R S Q+K 
Sbjct: 3   ALAQVSASLSLSIHDVSAVRPSRTRLPISRLPTSSLARNGTAFATGSPLLISRTSRQKKA 62

Query: 60  LQKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTA 119
             +AT V++RCE+ T+  + +DVW+GRLAM+GFA  +SVEI+TGKGLLENFGLT+PLPT 
Sbjct: 63  AGRATFVSVRCEKSTQEGSGVDVWIGRLAMIGFAGVVSVEIATGKGLLENFGLTAPLPTV 122

Query: 120 ALAVTALVGVLTAVFIFQSASEN 142
           ALAVT L+GVLTAVFIFQSASEN
Sbjct: 123 ALAVTGLMGVLTAVFIFQSASEN 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060552|ref|XP_002300234.1| stress enhanced protein 1 [Populus trichocarpa] gi|118486513|gb|ABK95096.1| unknown [Populus trichocarpa] gi|222847492|gb|EEE85039.1| stress enhanced protein 1 [Populus trichocarpa]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/143 (68%), Positives = 117/143 (81%), Gaps = 2/143 (1%)

Query: 2   ALAQVSASLSLSVSDAFAFSSAKTR-TISRLPTSSHARIGTTFATGSP-LLWRISPQRKC 59
           A+AQV+ASLSLS+ DA A  S++T   ISRLPT + AR GTTFATGSP L+ R S Q+K 
Sbjct: 3   AVAQVTASLSLSIRDASAVGSSRTHLPISRLPTFTFARNGTTFATGSPFLISRTSHQKKA 62

Query: 60  LQKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTA 119
             +AT V++RCEQ T+  +S+DVW+GRLAMV FA AISVEI+TGKGLLENFGLT+PLPT 
Sbjct: 63  AGRATFVSVRCEQNTQDGSSVDVWIGRLAMVAFAGAISVEIATGKGLLENFGLTNPLPTV 122

Query: 120 ALAVTALVGVLTAVFIFQSASEN 142
           ALAVT L+GVL AVFIFQSAS+N
Sbjct: 123 ALAVTGLMGVLAAVFIFQSASKN 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721648|ref|NP_001235169.1| uncharacterized protein LOC100306702 [Glycine max] gi|255629321|gb|ACU15005.1| unknown [Glycine max]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 105/142 (73%)

Query: 1   MALAQVSASLSLSVSDAFAFSSAKTRTISRLPTSSHARIGTTFATGSPLLWRISPQRKCL 60
           MAL Q  ASLS+S  DA  F++ K    +  P  +      +F  GSPLL R +  R   
Sbjct: 1   MALVQPFASLSISFRDARVFTAPKCSPTTHFPHRNLVPTRASFIAGSPLLIRRNHGRNGA 60

Query: 61  QKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAA 120
            KA SV+IRCEQ T+  NSLDVWLGRLAMVGFAVAI+VEI+TGKGLLENFGLTSPLPT A
Sbjct: 61  CKAMSVSIRCEQSTQEGNSLDVWLGRLAMVGFAVAITVEIATGKGLLENFGLTSPLPTVA 120

Query: 121 LAVTALVGVLTAVFIFQSASEN 142
           LAVTALVGVLTAVFIFQSAS+N
Sbjct: 121 LAVTALVGVLTAVFIFQSASKN 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575664|ref|XP_003555958.1| PREDICTED: uncharacterized protein LOC100803296 [Glycine max]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 104/142 (73%)

Query: 1   MALAQVSASLSLSVSDAFAFSSAKTRTISRLPTSSHARIGTTFATGSPLLWRISPQRKCL 60
           MAL + SASLS+S   A  F+  K    +  P  +      +F  GSPLL R +  RK  
Sbjct: 1   MALVEASASLSISSGVARLFTPPKCSPTAHFPHRNFVATRPSFIAGSPLLIRRNHGRKAA 60

Query: 61  QKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAA 120
            KA  VTIRCEQ T+  NSLDVWLGRLAMVGFAVAI+VEI+TGKGLLENFGLTSPLPT A
Sbjct: 61  CKAMPVTIRCEQSTQEGNSLDVWLGRLAMVGFAVAITVEIATGKGLLENFGLTSPLPTVA 120

Query: 121 LAVTALVGVLTAVFIFQSASEN 142
           LAVTALVGVLTAVFIFQSAS+N
Sbjct: 121 LAVTALVGVLTAVFIFQSASKN 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428894|ref|XP_002285346.1| PREDICTED: uncharacterized protein LOC100248700 [Vitis vinifera] gi|147838048|emb|CAN60917.1| hypothetical protein VITISV_019331 [Vitis vinifera] gi|296090452|emb|CBI40271.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/125 (74%), Positives = 102/125 (81%), Gaps = 1/125 (0%)

Query: 19  AFSSAKTRTISRLPTSSHARIGTTFATGSPLL-WRISPQRKCLQKATSVTIRCEQGTKGR 77
           A SSA+  +  RLP SS ARI + FA+GSPLL  R S  +K   +ATSV+IRCEQ     
Sbjct: 24  APSSARAFSTPRLPISSLARIRSPFASGSPLLICRSSRLQKPACRATSVSIRCEQSANEG 83

Query: 78  NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAALAVTALVGVLTAVFIFQ 137
           NSLDVWLGRLAMVGFAVAISVEI+TGKGLLENFGLTSPLPT ALAVTALVGVLTAVFIFQ
Sbjct: 84  NSLDVWLGRLAMVGFAVAISVEIATGKGLLENFGLTSPLPTVALAVTALVGVLTAVFIFQ 143

Query: 138 SASEN 142
           SAS+N
Sbjct: 144 SASKN 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638189|gb|ACU19408.1| unknown [Glycine max]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/142 (64%), Positives = 103/142 (72%)

Query: 1   MALAQVSASLSLSVSDAFAFSSAKTRTISRLPTSSHARIGTTFATGSPLLWRISPQRKCL 60
           MAL + SAS S+S   A  F+  K    +  P  +      +F  GSPLL R +  RK  
Sbjct: 1   MALVEASASPSISSGVARLFTPPKYSPTAHFPHRNFVATRPSFIAGSPLLIRRNHGRKAA 60

Query: 61  QKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAA 120
            KA  VTIRCEQ T+  NSLDVWLGRLAMVGFAVAI+VEI+TGKGLLENFGLTSPLPT A
Sbjct: 61  CKAMPVTIRCEQSTQEGNSLDVWLGRLAMVGFAVAITVEIATGKGLLENFGLTSPLPTVA 120

Query: 121 LAVTALVGVLTAVFIFQSASEN 142
           LAVTALVGVLTAVFIFQSAS+N
Sbjct: 121 LAVTALVGVLTAVFIFQSASKN 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496288|gb|AFK36210.1| unknown [Lotus japonicus]

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 91/143 (63%), Positives = 105/143 (73%), Gaps = 1/143 (0%)

Query: 1   MALA-QVSASLSLSVSDAFAFSSAKTRTISRLPTSSHARIGTTFATGSPLLWRISPQRKC 59
           MALA Q SASLS+S  DA  F +AK    +R P  +      +FATG+PLL R S  RK 
Sbjct: 1   MALATQTSASLSISFRDACVFPAAKYSATARFPLPNLVPSRASFATGTPLLIRRSHGRKL 60

Query: 60  LQKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTA 119
             +A  V+IR EQ TK  N LDVWLGRLAM+GFA  I+VE++TGKGLLENFG+ SPLPT 
Sbjct: 61  ACRAMPVSIRSEQSTKDGNGLDVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTV 120

Query: 120 ALAVTALVGVLTAVFIFQSASEN 142
           ALAVTALVGVLTAVFIFQSAS+N
Sbjct: 121 ALAVTALVGVLTAVFIFQSASKN 143

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225001266|gb|ACN78495.1| putative stress enhanced protein [Arachis hypogaea]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/141 (60%), Positives = 105/141 (74%), Gaps = 1/141 (0%)

Query: 3   LAQVSASLSLSVSDAFAFSSA-KTRTISRLPTSSHARIGTTFATGSPLLWRISPQRKCLQ 61
           + Q SASLSLS   A  F+   K    SR   S+      +F TGSPL+ + S +RK + 
Sbjct: 4   VVQPSASLSLSFRAACVFTPPPKHFATSRHALSNLVPTRASFVTGSPLVIQTSYERKTIC 63

Query: 62  KATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAAL 121
           KA  V+I+CEQ ++G NS+DVWLGRLAMVGFA AI+VEI+TGKGLLENFG+T+PLPT AL
Sbjct: 64  KAMPVSIKCEQSSQGGNSVDVWLGRLAMVGFASAITVEIATGKGLLENFGVTAPLPTVAL 123

Query: 122 AVTALVGVLTAVFIFQSASEN 142
           AVT LVGVLTA+FIFQSAS+N
Sbjct: 124 AVTGLVGVLTAIFIFQSASKN 144

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722414|ref|NP_001237755.1| uncharacterized protein LOC100500418 [Glycine max] gi|255630276|gb|ACU15493.1| unknown [Glycine max]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/142 (61%), Positives = 101/142 (71%), Gaps = 1/142 (0%)

Query: 1   MALAQVSASLSLSVSDAFAFSSAKTRTISRLPTSSHARIGTTFATGSPLLWRISPQRKCL 60
           MAL +  ASLS+S S A  F+  K    +  P  +      +F  GSPLL + +  RK  
Sbjct: 1   MALVEAYASLSIS-SVARLFTPPKCSPTAHFPHRNFVATRPSFIVGSPLLIQRNHGRKAA 59

Query: 61  QKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAA 120
            KA  V IRCEQ T+  N LDVWLGRLAMVGFAVAI+VEISTGKGLLENFG+ +PLPT A
Sbjct: 60  CKAIPVPIRCEQSTQQGNGLDVWLGRLAMVGFAVAITVEISTGKGLLENFGVPTPLPTVA 119

Query: 121 LAVTALVGVLTAVFIFQSASEN 142
           LAVTALVGVLTAVFIFQSAS++
Sbjct: 120 LAVTALVGVLTAVFIFQSASKS 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418396|ref|NP_567958.1| stress enhanced protein 1 [Arabidopsis thaliana] gi|7384978|gb|AAF61625.1|AF133716_1 stress enhanced protein 1 [Arabidopsis thaliana] gi|19699301|gb|AAL91261.1| AT4g34190/F28A23_50 [Arabidopsis thaliana] gi|21617911|gb|AAM66961.1| unknown [Arabidopsis thaliana] gi|23507751|gb|AAN38679.1| At4g34190/F28A23_50 [Arabidopsis thaliana] gi|332660938|gb|AEE86338.1| stress enhanced protein 1 [Arabidopsis thaliana]

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 93/150 (62%), Positives = 114/150 (76%), Gaps = 12/150 (8%)

Query: 1   MALAQVSASLSLSVSDAFAFSSAKTRTISRLPTSS---H----ARIGTTFATGSPLL-WR 52
           MAL+QVSASL+ S+ ++ A    K  TI+  PTS+   H    A I +TFA+GSPLL  +
Sbjct: 1   MALSQVSASLAFSLPNSGAL---KLATITN-PTSTCRVHVPQLAGIRSTFASGSPLLPLK 56

Query: 53  ISPQRKCLQKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
           +S  R+   +A SV+IR EQ T+G + LD+WLGR AMVGFAVAI+VEISTGKGLLENFG+
Sbjct: 57  LSMTRRGGNRAASVSIRSEQSTEGSSGLDIWLGRGAMVGFAVAITVEISTGKGLLENFGV 116

Query: 113 TSPLPTAALAVTALVGVLTAVFIFQSASEN 142
            SPLPT ALAVTALVGVL AVFIFQS+S+N
Sbjct: 117 ASPLPTVALAVTALVGVLAAVFIFQSSSKN 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2124236	146	SEP1 "AT4G34190" [Arabidopsis	0.830	0.808	0.496	3.9e-21

TAIR|locus:2124236 SEP1 "AT4G34190" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 63/127 (49%), Positives = 78/127 (61%)

Query:    24 KTRTISRLPTSS---H----ARIGTTFATGSPLL-WRISPQRKCLQKATSVTIRCEQGTK 75
             K  TI+  PTS+   H    A I +TFA+GSPLL  ++S  R+   +A SV+IR EQ T+
Sbjct:    21 KLATITN-PTSTCRVHVPQLAGIRSTFASGSPLLPLKLSMTRRGGNRAASVSIRSEQSTE 79

Query:    76 GRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFXXXXXXXXXXXXXXXXXXXXXXXFI 135
             G + LD+WLGR AMVGFAVAI+VEISTGKGLLENF                       FI
Sbjct:    80 GSSGLDIWLGRGAMVGFAVAITVEISTGKGLLENFGVASPLPTVALAVTALVGVLAAVFI 139

Query:   136 FQSASEN 142
             FQS+S+N
Sbjct:   140 FQSSSKN 146


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.131   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142        97   0.00091  102 3  11 22  0.49    29
                                                     29  0.44    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  552 (59 KB)
  Total size of DFA:  107 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.11u 0.16s 10.27t   Elapsed:  00:00:00
  Total cpu time:  10.11u 0.16s 10.27t   Elapsed:  00:00:00
  Start:  Sat May 11 02:55:27 2013   End:  Sat May 11 02:55:27 2013

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0016168 "chlorophyll binding" evidence=TAS

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Lil4_2 stress-enhanced protein 1 (145 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PLN00014	250	light-harvesting-like protein 3; Provisional	99.44
PHA02337	35	putative high light inducible protein	99.42
PLN00084	214	photosystem II subunit S (PsbS); Provisional	99.27
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	98.23
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	98.21
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	98.17
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	98.09
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	98.07
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	98.03
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	98.01
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	97.98
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	97.96
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	97.95
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	97.91
PLN00171	324	photosystem light-harvesting complex -chlorophyll	97.86
PLN00187	286	photosystem II light-harvesting complex II protein	97.83
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	97.72
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	97.59
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	97.59
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	97.44
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	97.36
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	97.36
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	97.24
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	97.21
PLN00187	286	photosystem II light-harvesting complex II protein	97.13
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	97.02
PLN00171	324	photosystem light-harvesting complex -chlorophyll	96.83
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	96.73
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	96.63
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	96.57
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	93.97
PLN02449	485	ferrochelatase	93.92

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=99.44  E-value=9e-14  Score=116.06  Aligned_cols=58  Identities=31%  Similarity=0.376  Sum_probs=52.5

Q ss_pred             cchhhhhhccceeeeeccCCCC--------------CCchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372           55 PQRKCLQKATSVTIRCEQGTKG--------------RNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL  112 (142)
Q Consensus        55 ~~~~~~~~aa~~~v~~E~~~~~--------------~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~  112 (142)
                      +.|||.++...-+.-+|+.-|+              .+.+|++|||+|||||++++++|++||+|+++|+|.
T Consensus       123 ~rRK~LE~nPe~s~n~epv~FdtSiiPWWaW~~rf~l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~  194 (250)
T PLN00014        123 VRRKWLEDNPETSSNDEPVLFDTSIIPWWAWVKRFHLPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN  194 (250)
T ss_pred             HHHHHHhhCccccCCCCCceeecccccHHHHHHhccCchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence            6788999988888888888764              578999999999999999999999999999999984

>PHA02337 putative high light inducible protein

Probab=99.42  E-value=1.7e-13  Score=84.81  Aligned_cols=31  Identities=29%  Similarity=0.512  Sum_probs=28.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhCcchh
Q 032372           77 RNSLDVWLGRLAMVGFAVAISVEISTGKGLL  107 (142)
Q Consensus        77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil  107 (142)
                      .+.+|+||||+||+||++++..|+.|||++-
T Consensus         2 t~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip   32 (35)
T PHA02337          2 TPEAEIFNGWLAMIGFVAAVGAYATTGQIIP   32 (35)
T ss_pred             ccHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence            5679999999999999999999999999874

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=99.27  E-value=4.1e-12  Score=103.19  Aligned_cols=44  Identities=39%  Similarity=0.634  Sum_probs=40.7

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHh-CcchhhhhccCCChhHH
Q 032372           76 GRNSLDVWLGRLAMVGFAVAISVEIST-GKGLLENFGLTSPLPTA  119 (142)
Q Consensus        76 ~~~~aE~~NGRlAMiGf~~~l~~E~~T-G~gil~q~g~~~~~p~~  119 (142)
                      .....|+||||+||+||+.+++.|++| |||+|+|+++++++|..
T Consensus       134 EqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~  178 (214)
T PLN00084        134 EQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVI  178 (214)
T ss_pred             hccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcch
Confidence            345689999999999999999999999 99999999999999954

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=98.23  E-value=5.5e-07  Score=75.71  Aligned_cols=35  Identities=37%  Similarity=0.390  Sum_probs=32.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL  112 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~  112 (142)
                      ...|+.|||+||++|++.++++.+||+|.+++++.
T Consensus       161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~  195 (246)
T PLN00100        161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKA  195 (246)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence            36899999999999999999999999999999864

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=98.21  E-value=3.4e-06  Score=64.18  Aligned_cols=29  Identities=31%  Similarity=0.376  Sum_probs=26.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhCcc
Q 032372           77 RNSLDVWLGRLAMVGFAVAISVEISTGKG  105 (142)
Q Consensus        77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~g  105 (142)
                      ...+|++|||+||+||++.++.|+.++.+
T Consensus        29 ~R~aEl~hGR~AMLa~~g~~v~e~~~~~~   57 (156)
T PF00504_consen   29 YREAELKHGRVAMLAFVGALVQEAGTGFP   57 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred             HHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence            45799999999999999999999999864

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=98.17  E-value=1.5e-06  Score=73.23  Aligned_cols=34  Identities=26%  Similarity=0.223  Sum_probs=31.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372           79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL  112 (142)
Q Consensus        79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~  112 (142)
                      ..|+.|||+||+++++.+++|++||+|+++++..
T Consensus       202 ~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~  235 (252)
T PLN00147        202 LKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLT  235 (252)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            4699999999999999999999999999999854

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=98.09  E-value=2.4e-06  Score=69.98  Aligned_cols=30  Identities=30%  Similarity=0.313  Sum_probs=27.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCcchhh
Q 032372           79 SLDVWLGRLAMVGFAVAISVEISTGKGLLE  108 (142)
Q Consensus        79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~  108 (142)
                      ..|+.|||+||+|+.+.++.|.+||+|+++
T Consensus       179 ~~El~NGRlAM~a~~g~~~~~~~tg~g~~~  208 (209)
T PLN00089        179 DKELKNGRLAMVAIGGIATGSAITGHGFPY  208 (209)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence            359999999999999999999999999864

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=98.07  E-value=1.3e-06  Score=73.44  Aligned_cols=34  Identities=35%  Similarity=0.390  Sum_probs=31.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372           79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL  112 (142)
Q Consensus        79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~  112 (142)
                      ..|+.||||||++|++.++++.+||+|.++++..
T Consensus       202 ~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~  235 (250)
T PLN00101        202 EKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQ  235 (250)
T ss_pred             HHHHhhcchHHHHHhhHhheehccCCChHHHHHH
Confidence            4799999999999999999999999999999843

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=98.03  E-value=2.8e-06  Score=71.21  Aligned_cols=35  Identities=29%  Similarity=0.386  Sum_probs=31.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHH-HHhCcchhhhhcc
Q 032372           78 NSLDVWLGRLAMVGFAVAISVE-ISTGKGLLENFGL  112 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E-~~TG~gil~q~g~  112 (142)
                      ...|+.|||+||++|++.+++| .+||+|+++++..
T Consensus       187 k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~  222 (243)
T PLN00099        187 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT  222 (243)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHH
Confidence            3579999999999999999999 5799999999864

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=98.01  E-value=1.8e-06  Score=65.65  Aligned_cols=25  Identities=32%  Similarity=0.296  Sum_probs=21.6

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHH
Q 032372           76 GRNSLDVWLGRLAMVGFAVAISVEI  100 (142)
Q Consensus        76 ~~~~aE~~NGRlAMiGf~~~l~~E~  100 (142)
                      ....+|++|||+|||||++.+++|.
T Consensus       132 ~~~~~El~NGRlAMla~~g~~~~e~  156 (156)
T PF00504_consen  132 FMQLAELKNGRLAMLAFAGFVAQEA  156 (156)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4567999999999999999999873

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=97.98  E-value=4.3e-06  Score=70.81  Aligned_cols=35  Identities=37%  Similarity=0.394  Sum_probs=32.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL  112 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~  112 (142)
                      ...|+.|||+||+++++.+++|++||+|.++++..
T Consensus       207 k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~  241 (262)
T PLN00025        207 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD  241 (262)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence            36799999999999999999999999999999864

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=97.96  E-value=4.9e-06  Score=69.89  Aligned_cols=34  Identities=32%  Similarity=0.408  Sum_probs=31.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372           79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL  112 (142)
Q Consensus        79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~  112 (142)
                      ..|+.|||+||++|++.++++.+||+|.++++..
T Consensus       199 ~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~  232 (244)
T PLN00097        199 LKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFS  232 (244)
T ss_pred             HHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHH
Confidence            4899999999999999999999999999999853

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=97.95  E-value=5.8e-06  Score=70.18  Aligned_cols=33  Identities=33%  Similarity=0.441  Sum_probs=31.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhc
Q 032372           79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFG  111 (142)
Q Consensus        79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g  111 (142)
                      ..|+.|||+||+++++.++++.+||+|+++++.
T Consensus       217 ~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~  249 (267)
T PLN00098        217 TKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLM  249 (267)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHH
Confidence            489999999999999999999999999999984

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=97.91  E-value=6.3e-06  Score=69.73  Aligned_cols=34  Identities=29%  Similarity=0.306  Sum_probs=31.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhc
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFG  111 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g  111 (142)
                      ...|+.|||+||+++++.+++|++||+|.++++.
T Consensus       211 k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~  244 (262)
T PLN00048        211 KLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLL  244 (262)
T ss_pred             HHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHH
Confidence            3578999999999999999999999999999984

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=97.86  E-value=1.1e-05  Score=70.36  Aligned_cols=34  Identities=32%  Similarity=0.312  Sum_probs=31.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372           79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL  112 (142)
Q Consensus        79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~  112 (142)
                      ..|+.|||+||+|+++.++.|.+||+|.++++..
T Consensus       275 ~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~  308 (324)
T PLN00171        275 VKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVD  308 (324)
T ss_pred             HHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHH
Confidence            4699999999999999999999999999999743

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=97.83  E-value=1.3e-05  Score=68.70  Aligned_cols=34  Identities=35%  Similarity=0.415  Sum_probs=31.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372           79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL  112 (142)
Q Consensus        79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~  112 (142)
                      ..|+.|||+||+++++.++.|.+||+|.++++..
T Consensus       237 ~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~  270 (286)
T PLN00187        237 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWAT  270 (286)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            5799999999999999999999999999998854

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=97.72  E-value=2.6e-05  Score=63.58  Aligned_cols=26  Identities=19%  Similarity=0.226  Sum_probs=24.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCc
Q 032372           79 SLDVWLGRLAMVGFAVAISVEISTGK  104 (142)
Q Consensus        79 ~aE~~NGRlAMiGf~~~l~~E~~TG~  104 (142)
                      ..|+.|||+||||+.+.++.|.++|.
T Consensus       170 ~~EL~NGRLAMiai~G~~~qe~l~g~  195 (202)
T PLN00120        170 AIELNQGRAAQMGILALMVHEQLGVE  195 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            56999999999999999999999996

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=97.59  E-value=3.7e-05  Score=64.85  Aligned_cols=30  Identities=30%  Similarity=0.381  Sum_probs=28.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCcchh
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTGKGLL  107 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil  107 (142)
                      ..+|+.|||+||+|+++.++.|++|++|++
T Consensus        92 r~aEl~hGRlAMla~~G~l~~e~l~~~g~~  121 (250)
T PLN00101         92 VQAELVNGRWAMLGVAGMLLPEVFTKIGII  121 (250)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence            467999999999999999999999999886

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=97.59  E-value=3.7e-05  Score=65.10  Aligned_cols=32  Identities=41%  Similarity=0.440  Sum_probs=28.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCcchhhh
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLEN  109 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q  109 (142)
                      ..+|+.|||+||+|+++.++.|+++++|++.+
T Consensus        86 r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~  117 (262)
T PLN00048         86 AYGEVINGRFAMLGAAGAIAPEILGKAGLIPQ  117 (262)
T ss_pred             HHHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence            46799999999999999999999999888753

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=97.44  E-value=6e-05  Score=63.81  Aligned_cols=34  Identities=29%  Similarity=0.352  Sum_probs=29.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL  112 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~  112 (142)
                      ...|+.|||+||++|++.+++- .||+|.|+++|+
T Consensus       222 k~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~~  255 (255)
T PLN00170        222 KLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALGL  255 (255)
T ss_pred             HHHHHhhhHHHHHHHHhHheee-ccCCCchhhhcC
Confidence            3579999999999999777655 899999999885

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=97.36  E-value=0.00012  Score=62.26  Aligned_cols=31  Identities=23%  Similarity=0.254  Sum_probs=28.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCcchhh
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLE  108 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~  108 (142)
                      ..+|+.|||+||+|+++.++.|++++.|++.
T Consensus       101 r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~  131 (267)
T PLN00098        101 AQAELMHSRWAMLAVAGILIPECLERLGFIE  131 (267)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence            5789999999999999999999999988765

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=97.36  E-value=0.00028  Score=59.74  Aligned_cols=32  Identities=19%  Similarity=0.183  Sum_probs=28.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCcchhhh
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLEN  109 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q  109 (142)
                      ..+|+.|||+||+|+++.++.|+++|..+++.
T Consensus        96 r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~a  127 (255)
T PLN00170         96 REAELIHGRWAMAAVVGIFVGQAWSGIPWFEA  127 (255)
T ss_pred             HHHHhhccHHHHHHHHhhhhHHHccCCChhhC
Confidence            46799999999999999999999999876653

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=97.24  E-value=0.00043  Score=58.79  Aligned_cols=29  Identities=28%  Similarity=0.415  Sum_probs=26.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCcch
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTGKGL  106 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gi  106 (142)
                      ..+|+.|||+||+|+++.++.|++++.|+
T Consensus        92 re~El~hGR~AMLa~~G~i~~e~l~~~g~  120 (262)
T PLN00025         92 RELEVIHARWAMLGALGCVTPELLAKNGV  120 (262)
T ss_pred             HHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence            46799999999999999999999997765

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=97.21  E-value=0.00048  Score=58.05  Aligned_cols=31  Identities=26%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhCcchh
Q 032372           77 RNSLDVWLGRLAMVGFAVAISVEISTGKGLL  107 (142)
Q Consensus        77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil  107 (142)
                      ...+|+.|||+||+|+++.++.|++++.|+.
T Consensus        82 ~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~  112 (244)
T PLN00097         82 FVQAELMHARWAMLGLAGCVAPELLTKIGMA  112 (244)
T ss_pred             HHHHHHhcchHHHHHHhhhhHHHHhcCCCcc
Confidence            4578999999999999999999999988764

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=97.13  E-value=0.00063  Score=58.51  Aligned_cols=27  Identities=37%  Similarity=0.391  Sum_probs=24.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCc
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTGK  104 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~  104 (142)
                      ..+|++|||+||+|+++.++.|+.+|.
T Consensus       134 REaELiHGRwAMLAvaG~lvpEll~G~  160 (286)
T PLN00187        134 RECELIHGRWAMLATLGALSVEALTGV  160 (286)
T ss_pred             HHHHhhhhHHHHHHhhchhhHHhccCC
Confidence            577999999999999999999999875

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=97.02  E-value=0.0004  Score=58.67  Aligned_cols=30  Identities=20%  Similarity=0.261  Sum_probs=26.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhCcch
Q 032372           77 RNSLDVWLGRLAMVGFAVAISVEISTGKGL  106 (142)
Q Consensus        77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~gi  106 (142)
                      ...+|+.|||+||+|+++.++.|+++..|+
T Consensus        83 ~r~aElkhGR~AMlA~~G~l~~e~~~~~g~  112 (252)
T PLN00147         83 YVQAELVHSRFAMAGVAGILFTDLLRVTGI  112 (252)
T ss_pred             HHHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence            357899999999999999999999987764

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=96.83  E-value=0.00065  Score=59.39  Aligned_cols=30  Identities=17%  Similarity=0.151  Sum_probs=26.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCcchh
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTGKGLL  107 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil  107 (142)
                      ..+|+.|||+||+|+++.++.|++++.+..
T Consensus       149 reaELkHGR~AMLA~~G~lv~e~l~~~g~~  178 (324)
T PLN00171        149 FNFEILHARWAMLAALGVVIPEVLDLFGAV  178 (324)
T ss_pred             HHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence            357999999999999999999999877654

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=96.73  E-value=0.0022  Score=54.18  Aligned_cols=26  Identities=19%  Similarity=0.125  Sum_probs=23.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhC
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTG  103 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG  103 (142)
                      ..+|+.|||+||+|+++.++.|+++.
T Consensus        74 r~aEl~hGR~AMla~~G~~~~E~~~~   99 (246)
T PLN00100         74 QEAELMNGRWAMAATAGILFTDAVGL   99 (246)
T ss_pred             HHHHhhcchHHHHHHhhhhHHHHhcc
Confidence            46899999999999999999999753

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=96.63  E-value=0.0018  Score=53.20  Aligned_cols=31  Identities=23%  Similarity=0.118  Sum_probs=26.3

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHhCcch
Q 032372           76 GRNSLDVWLGRLAMVGFAVAISVEISTGKGL  106 (142)
Q Consensus        76 ~~~~aE~~NGRlAMiGf~~~l~~E~~TG~gi  106 (142)
                      +...+|+.|||+||+++++.++.|.++.-|.
T Consensus        74 ~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~  104 (209)
T PLN00089         74 WFRESELKHGRAAMLAVAGFIAPDFVRIPGE  104 (209)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence            3457999999999999999999999875543

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=96.57  E-value=0.0048  Score=51.94  Aligned_cols=27  Identities=15%  Similarity=0.008  Sum_probs=23.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhC
Q 032372           77 RNSLDVWLGRLAMVGFAVAISVEISTG  103 (142)
Q Consensus        77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG  103 (142)
                      ...+|+.|||+||+|+++.++.|+++.
T Consensus        82 ~r~~ELkHGR~AMLAv~G~i~~E~l~~  108 (243)
T PLN00099         82 YKESELIHCRWAMLAVPGILVPEALGL  108 (243)
T ss_pred             HHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence            356899999999999999999999754

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=93.97  E-value=0.013  Score=47.88  Aligned_cols=24  Identities=17%  Similarity=0.273  Sum_probs=21.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHH
Q 032372           77 RNSLDVWLGRLAMVGFAVAISVEI  100 (142)
Q Consensus        77 ~~~aE~~NGRlAMiGf~~~l~~E~  100 (142)
                      ...+|+.|||+||+++++.++.|.
T Consensus        64 ~r~~ElkhGRlAMlA~~G~~~~~~   87 (202)
T PLN00120         64 LRYVEIKHGRISMLAVVGYLVTEA   87 (202)
T ss_pred             HHHHHhhcccHHHHhhccceeecc
Confidence            357999999999999999999996

>PLN02449 ferrochelatase

Probab=93.92  E-value=0.035  Score=50.84  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHhCcchhhh
Q 032372           87 LAMVGFAVAISVEISTGKGLLEN  109 (142)
Q Consensus        87 lAMiGf~~~l~~E~~TG~gil~q  109 (142)
                      +||+||++.++.|++||+|.||+
T Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~  485 (485)
T PLN02449        463 AAMLAVLLLLVLEVTSGFGNLHQ  485 (485)
T ss_pred             hHHHHHHHHHHHHHHcCCCcCCC
Confidence            99999999999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	98.46
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	98.38
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	98.27
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	98.25
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	98.15
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	97.88
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	97.52
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	97.33
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	97.24
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	96.89
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	96.87
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	93.7

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=98.46  E-value=8.6e-08  Score=78.04  Aligned_cols=33  Identities=39%  Similarity=0.437  Sum_probs=31.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhc
Q 032372           79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFG  111 (142)
Q Consensus        79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g  111 (142)
                      .+|++|||+||+||++.++.|.+||+|+++|+.
T Consensus       178 ~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~  210 (232)
T 2bhw_A          178 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA  210 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHH
T ss_pred             HhhhhccchHHHHHHHHHHHHHhcCCChHHHHH
Confidence            679999999999999999999999999999984

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=98.38  E-value=2e-07  Score=76.93  Aligned_cols=34  Identities=38%  Similarity=0.436  Sum_probs=32.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhc
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFG  111 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g  111 (142)
                      ..+|++|||+||+||++.++.|++||+|+++|+.
T Consensus       194 r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~  227 (243)
T 3pl9_A          194 QLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWV  227 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            3689999999999999999999999999999985

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=98.27  E-value=9.5e-08  Score=79.66  Aligned_cols=36  Identities=31%  Similarity=0.324  Sum_probs=33.5

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhc
Q 032372           76 GRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFG  111 (142)
Q Consensus        76 ~~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g  111 (142)
                      ....+|++|||+||+||++.++.|.+||+|+++++.
T Consensus       216 ~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~  251 (269)
T 2wsc_2          216 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF  251 (269)
T ss_dssp             TSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred             HHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            346799999999999999999999999999999987

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=98.25  E-value=1.2e-07  Score=79.38  Aligned_cols=37  Identities=27%  Similarity=0.213  Sum_probs=30.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhccC
Q 032372           77 RNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLT  113 (142)
Q Consensus        77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~~  113 (142)
                      ...+|++|||+||+||++.++.|++||+|+++|+...
T Consensus       224 ~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~H  260 (276)
T 2wsc_3          224 LKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDH  260 (276)
T ss_dssp             -CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC----
T ss_pred             HHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHh
Confidence            3578999999999999999999999999999998643

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=98.15  E-value=3e-07  Score=75.54  Aligned_cols=38  Identities=26%  Similarity=0.316  Sum_probs=33.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHH-HHhCcchhhhhccCC
Q 032372           77 RNSLDVWLGRLAMVGFAVAISVE-ISTGKGLLENFGLTS  114 (142)
Q Consensus        77 ~~~aE~~NGRlAMiGf~~~l~~E-~~TG~gil~q~g~~~  114 (142)
                      ...+|++|||+||+||++.++.| .+||+|++++++..-
T Consensus       187 ~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~  225 (241)
T 2wsc_1          187 LKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL  225 (241)
T ss_dssp             SCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSC
T ss_pred             HHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHh
Confidence            45789999999999999999999 589999999987543

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=97.88  E-value=2.4e-06  Score=70.45  Aligned_cols=35  Identities=31%  Similarity=0.366  Sum_probs=32.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhccC
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLT  113 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~~  113 (142)
                      ...|+.|||| |+||++.+++|.+||+++++++...
T Consensus       201 k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~h  235 (251)
T 2wsc_4          201 KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQH  235 (251)
T ss_dssp             TTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTT
T ss_pred             HHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHH
Confidence            4689999999 9999999999999999999998643

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=97.52  E-value=6.4e-06  Score=67.91  Aligned_cols=33  Identities=27%  Similarity=0.299  Sum_probs=29.9

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHhCcchhh
Q 032372           76 GRNSLDVWLGRLAMVGFAVAISVEISTGKGLLE  108 (142)
Q Consensus        76 ~~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~  108 (142)
                      +...+|++|||+||+||++.++.|+++++|++.
T Consensus        90 ~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~  122 (251)
T 2wsc_4           90 WFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN  122 (251)
T ss_dssp             TTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSC
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhcCCCccC
Confidence            346899999999999999999999999998874

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=97.33  E-value=0.00029  Score=58.12  Aligned_cols=28  Identities=32%  Similarity=0.283  Sum_probs=25.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhCc
Q 032372           77 RNSLDVWLGRLAMVGFAVAISVEISTGK  104 (142)
Q Consensus        77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~  104 (142)
                      ...+|++|||+||+|+++.++.|+.+|-
T Consensus        92 ~ReaELkHGRwAMLAvlG~lvpE~l~g~  119 (243)
T 3pl9_A           92 FRECELIHGRWAMLATLGALTVEGLTGI  119 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHhhhhcchhHHHHHHHHHhHHhhcCc
Confidence            3468999999999999999999999864

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=97.24  E-value=0.00013  Score=60.77  Aligned_cols=32  Identities=28%  Similarity=0.223  Sum_probs=28.9

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHhCcchh
Q 032372           76 GRNSLDVWLGRLAMVGFAVAISVEISTGKGLL  107 (142)
Q Consensus        76 ~~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil  107 (142)
                      +...+|+.|||+||+|+++.++.|++++.|++
T Consensus       101 ~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~  132 (269)
T 2wsc_2          101 WNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL  132 (269)
T ss_dssp             TTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred             HHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence            35689999999999999999999999988765

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=96.89  E-value=1.3e-05  Score=67.10  Aligned_cols=31  Identities=35%  Similarity=0.379  Sum_probs=28.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhCcchh
Q 032372           77 RNSLDVWLGRLAMVGFAVAISVEISTGKGLL  107 (142)
Q Consensus        77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil  107 (142)
                      ...+|++|||+||+|+++.++.|++++.|++
T Consensus        99 ~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~  129 (276)
T 2wsc_3           99 LAYGEIINGRYAMLGAVGAIAPEILGKAGLI  129 (276)
T ss_dssp             HHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred             HHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence            3569999999999999999999999998876

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=96.87  E-value=0.00065  Score=55.16  Aligned_cols=28  Identities=29%  Similarity=0.375  Sum_probs=24.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCcc
Q 032372           78 NSLDVWLGRLAMVGFAVAISVEISTGKG  105 (142)
Q Consensus        78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~g  105 (142)
                      ..+|++|||+||+|+++.++.|+++..|
T Consensus        62 ReaELkHGR~AMLA~~G~lv~E~l~~~G   89 (232)
T 2bhw_A           62 RELEVIHSRWAMLGALGSVFPELLSRNG   89 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHhccchHHHhhhhhhhHHHhccCC
Confidence            5799999999999999999999987433

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=93.70  E-value=0.0023  Score=52.52  Aligned_cols=27  Identities=15%  Similarity=0.012  Sum_probs=23.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhC
Q 032372           77 RNSLDVWLGRLAMVGFAVAISVEISTG  103 (142)
Q Consensus        77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG  103 (142)
                      ...+|+.|||+||+++++.++.|+++.
T Consensus        83 ~r~~El~hgR~AMla~~G~~~~e~~~~  109 (241)
T 2wsc_1           83 YKESELIHCRWAMLAVPGILVPEALGY  109 (241)
T ss_dssp             SHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred             HHHHHHhhchhHHhhhhcccchhhccC
Confidence            357999999999999999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1rwta_	218	f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi	0.004

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 33.5 bits (76), Expect = 0.004
 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 85  GRLAMVGFAVAISVEISTGKGLLENFG--LTSPLPTAALAVTA 125
           GRLAM          I TGKG LEN    L  P+   A     
Sbjct: 171 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFAT 213

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	98.64
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	96.94

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.64  E-value=7.8e-09  Score=80.50  Aligned_cols=33  Identities=39%  Similarity=0.450  Sum_probs=31.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhc
Q 032372           79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFG  111 (142)
Q Consensus        79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g  111 (142)
                      ..|+.||||||||+++.+++|++||+|.++|+.
T Consensus       165 ~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~  197 (218)
T d1rwta_         165 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA  197 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHH
Confidence            489999999999999999999999999999975

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=96.94  E-value=0.00025  Score=54.37  Aligned_cols=28  Identities=25%  Similarity=0.254  Sum_probs=24.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhCc
Q 032372           77 RNSLDVWLGRLAMVGFAVAISVEISTGK  104 (142)
Q Consensus        77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~  104 (142)
                      ...+|+.+||+||+++++.++.|+.+.-
T Consensus        48 ~ReaELKHGR~AMLA~vG~~~~E~~~~~   75 (218)
T d1rwta_          48 NRELEVIHCRWAMLGALGCVFPELLARN   75 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhceehHhhhcceeehhhhccC
Confidence            3479999999999999999999987643