Citrus Sinensis ID: 032384

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF
Secondary Structure (PSIPRED)
ccccccccHHHccccccccccHHHHHHHcccEEEEEEEEccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHcccccEEEEEEEccccHHHHHHHHHHHcccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mmlgqeprqttsnlghlnkpSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKkkwtdgltlhrfdchsktnEQTVQEMLNLAVKYNKavqeedelppekLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF
Flexible Loop (DISEMBL)
mmlgqeprqttsnlghlNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVqeedelppEKLAIANVGRQDAKKHLEEHVSnlmssnivqtlgtMLDTVIF
Low Complexity Region (SEG)
MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRkneleekmllnlhkkkWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF
Disordered region (IsUnstruct)
********************SIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNK**************************************IVQTLGTML*****
Disordered Region (DISOPRED)
******P***TSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLT***************QEMLNLAVK********************VGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF
Disordered Region (DISEMBL)
************NLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF
Disordered Region (DISPRO)
*************LGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q9LT08	308	26S proteasome non-ATPase	yes	no	1.0	0.461	0.943	5e-75
O35593	310	26S proteasome non-ATPase	yes	no	1.0	0.458	0.746	5e-58
O00487	310	26S proteasome non-ATPase	yes	no	1.0	0.458	0.746	5e-58
Q9V3H2	308	26S proteasome non-ATPase	yes	no	1.0	0.461	0.690	2e-55
Q86IJ1	306	26S proteasome non-ATPase	yes	no	0.964	0.447	0.613	3e-46
P41878	308	26S proteasome regulatory	yes	no	1.0	0.461	0.563	3e-41
O76577	312	26S proteasome non-ATPase	yes	no	0.978	0.445	0.532	5e-38
Q750E9	311	26S proteasome regulatory	yes	no	0.957	0.437	0.470	8e-28
P43588	306	26S proteasome regulatory	yes	no	0.950	0.441	0.488	6e-27
Q6FKS1	306	26S proteasome regulatory	yes	no	0.957	0.444	0.470	2e-25

>sp|Q9LT08|PSDE_ARATH 26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1

 Score =  279 bits (713), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 134/142 (94%), Positives = 137/142 (96%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           +MLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD
Sbjct: 167 IMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 226

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GLTL RFD HSKTNEQTVQEML+LA KYNKAVQEEDEL PEKLAI NVGRQDAKKHLEEH
Sbjct: 227 GLTLRRFDTHSKTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEH 286

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           VSNLMSSNIVQTLGTMLDTV+F
Sbjct: 287 VSNLMSSNIVQTLGTMLDTVVF 308

Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: -

>sp|O35593|PSDE_MOUSE 26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2

 Score =  222 bits (566), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/142 (74%), Positives = 119/142 (83%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYRKNELE+KMLLNLHKK W +
Sbjct: 168 MVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWME 227

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE+LAI NVG+QD K+HLEEH
Sbjct: 228 GLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEH 287

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           V  LM+SNIVQ L  MLDTV+F
Sbjct: 288 VDVLMTSNIVQCLAAMLDTVVF 309

Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|O00487|PSDE_HUMAN 26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1

 Score =  222 bits (566), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/142 (74%), Positives = 119/142 (83%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYRKNELE+KMLLNLHKK W +
Sbjct: 168 MVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWME 227

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE+LAI NVG+QD K+HLEEH
Sbjct: 228 GLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEH 287

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           V  LM+SNIVQ L  MLDTV+F
Sbjct: 288 VDVLMTSNIVQCLAAMLDTVVF 309

Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|Q9V3H2|PSDE_DROME 26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1

 Score =  213 bits (543), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/142 (69%), Positives = 120/142 (84%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           ++LGQEPRQTTSNLGHL KPS+QALIHGLNRHYYSI+INYRKNELE+KMLLNLHKK W D
Sbjct: 166 LVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWKD 225

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GLTL  ++ H   NE TV EML+LA  YNK++++E+++ PE+LAI NVG+QD K+HLEE 
Sbjct: 226 GLTLSDYNEHCSINEDTVAEMLDLAKNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEK 285

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           V  +M +NIVQ LG MLDT++F
Sbjct: 286 VDKVMQNNIVQCLGAMLDTIVF 307

Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|Q86IJ1|PSDE_DICDI 26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1

 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/137 (61%), Positives = 108/137 (78%)

Query: 6   EPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLH 65
           EPRQ TSNLGHL  PSIQALIHGLNR+YYSIAINYRKNELE+KMLLNLHKKKWT+GL + 
Sbjct: 170 EPRQITSNLGHLQDPSIQALIHGLNRNYYSIAINYRKNELEQKMLLNLHKKKWTEGLIVD 229

Query: 66  RFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLM 125
           +FD H ++NE+ +  +L L  +Y K++Q+ED++ PEK  ++ VG+ D K+HL   V  LM
Sbjct: 230 KFDTHEQSNEKQINNLLELTKQYQKSIQDEDKIEPEKKEVSAVGKLDPKRHLISDVHTLM 289

Query: 126 SSNIVQTLGTMLDTVIF 142
           ++N+V+ L  MLDTV F
Sbjct: 290 ANNVVRVLTVMLDTVTF 306

Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|P41878|RPN11_SCHPO 26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn11 PE=1 SV=2

 Score =  167 bits (422), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 102/142 (71%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           +M+GQEPRQTTSNLGH+NKPSIQALIHGL RHYYS+ INY+K ELEE MLLNLHK+ W  
Sbjct: 167 LMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHKQPWAH 226

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GL L  F+  ++ N  ++ +M +L+ +Y + VQ E  L PE+L I  VG+QD KKHL+  
Sbjct: 227 GLLLENFNSAAEKNHASIDKMKSLSEQYTERVQNEVTLSPEQLRIQYVGKQDPKKHLDAE 286

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           V   + +NI   L  MLD+V F
Sbjct: 287 VQKCIDNNISSMLACMLDSVAF 308

Transcription factor pap1 is controlled by the functional interaction between the positive regulator pad1 and negative regulator crm1. Both these proteins are also essential for cell viability and for the maintenance of chromosome structure. Pad1 is also responsible for resistance to staurosporine, and other drugs such as cycloheximide and caffeine.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O76577|PSDE_CAEEL 26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1

 Score =  155 bits (393), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/139 (53%), Positives = 102/139 (73%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           M L QEPRQTTSNLGHL KPSIQALIHGLNRHYYSI I YR ++LE+KMLLNL+K  W D
Sbjct: 170 MALNQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSIPIAYRTHDLEQKMLLNLNKLSWMD 229

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
            +++  +    + N++ ++ ML LA  Y KA+++E  +  ++LAI NVG+ D K+H+ + 
Sbjct: 230 AVSVENYSKCGEQNKEHLKAMLKLAKNYKKALEDEKNMTDQELAIKNVGKMDPKRHIADE 289

Query: 121 VSNLMSSNIVQTLGTMLDT 139
           VS +++ NIVQ+L  M+ T
Sbjct: 290 VSKMLNDNIVQSLAGMMAT 308

Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|Q750E9|RPN11_ASHGO 26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPN11 PE=3 SV=1

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 91/136 (66%)

Query: 5   QEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTL 64
           QEPRQTTSN+G LNKP+IQ+LIHGLNRHYYS+ I+Y K   E  ML+NLHK++W  GL +
Sbjct: 173 QEPRQTTSNVGLLNKPNIQSLIHGLNRHYYSLNIDYHKTSAELNMLMNLHKEQWQSGLKM 232

Query: 65  HRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNL 124
           H +    + N +  ++ + +A +Y K ++EE EL  ++L    VG+QD KKHL E    +
Sbjct: 233 HDYKEKERINLEATKKSVRIAEQYTKRIEEEKELTEDELKTRYVGKQDPKKHLSETAERV 292

Query: 125 MSSNIVQTLGTMLDTV 140
           +  NIV  L   +++V
Sbjct: 293 LEENIVSVLTAGVNSV 308

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|P43588|RPN11_YEAST 26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN11 PE=1 SV=1

 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/135 (48%), Positives = 91/135 (67%)

Query: 6   EPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLH 65
           EPRQTTSN G LNK +IQALIHGLNRHYYS+ I+Y K   E KML+NLHK++W  GL ++
Sbjct: 169 EPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMY 228

Query: 66  RFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLM 125
            ++   ++N    + M+ +A +Y+K ++EE EL  E+L    VGRQD KKHL E     +
Sbjct: 229 DYEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETL 288

Query: 126 SSNIVQTLGTMLDTV 140
            +NIV  L   +++V
Sbjct: 289 ENNIVSVLTAGVNSV 303

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6FKS1|RPN11_CANGA 26S proteasome regulatory subunit RPN11 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPN11 PE=3 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 88/136 (64%)

Query: 5   QEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTL 64
           QEPRQTTSN G +NK +IQALIHGLNRHYYS+ I+Y K   E KMLLNLHK++W  GL +
Sbjct: 168 QEPRQTTSNSGLMNKANIQALIHGLNRHYYSLNIDYHKTPAETKMLLNLHKEQWQSGLKM 227

Query: 65  HRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNL 124
             +      N +  + M+ +A +Y+K ++EE EL  E+L    VG+QD KKHL +   N 
Sbjct: 228 QDYQEKETENLEATKRMVAVAQQYSKRIEEEKELSEEELKTRYVGKQDPKKHLAKTAENT 287

Query: 125 MSSNIVQTLGTMLDTV 140
           +  N V  L   ++++
Sbjct: 288 LEENTVSVLTAGVNSI 303

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
224136700	312	predicted protein [Populus trichocarpa]	1.0	0.455	0.971	5e-76
449498698	309	PREDICTED: 26S proteasome non-ATPase reg	1.0	0.459	0.964	7e-76
449446983	309	PREDICTED: 26S proteasome non-ATPase reg	1.0	0.459	0.964	8e-76
302142339	303	unnamed protein product [Vitis vinifera]	1.0	0.468	0.964	2e-75
224067278	309	predicted protein [Populus trichocarpa]	1.0	0.459	0.964	2e-75
118487990	312	unknown [Populus trichocarpa]	1.0	0.455	0.964	2e-75
225458567	309	PREDICTED: 26S proteasome non-ATPase reg	1.0	0.459	0.964	2e-75
255538376	312	26S proteasome non-ATPase regulatory sub	1.0	0.455	0.964	2e-75
224284722	308	unknown [Picea sitchensis]	1.0	0.461	0.957	2e-75
125552076	307	hypothetical protein OsI_19702 [Oryza sa	1.0	0.462	0.957	4e-75

>gi|224136700|ref|XP_002326923.1| predicted protein [Populus trichocarpa] gi|222835238|gb|EEE73673.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (737), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 138/142 (97%), Positives = 140/142 (98%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD
Sbjct: 171 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 230

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GLTL RFD HSKTNEQTVQEMLNLA+KYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH
Sbjct: 231 GLTLKRFDTHSKTNEQTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 290

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           VSNLMSSNIVQTLGTMLDTV+F
Sbjct: 291 VSNLMSSNIVQTLGTMLDTVVF 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498698|ref|XP_004160609.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 14-like [Cucumis sativus]

 Score =  288 bits (736), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 137/142 (96%), Positives = 140/142 (98%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD
Sbjct: 168 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 227

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GLTL RFD HSKTNEQTVQEMLNLA+KYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH
Sbjct: 228 GLTLQRFDTHSKTNEQTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 287

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           VSNLMSSNI+QTLGTMLDTV+F
Sbjct: 288 VSNLMSSNIIQTLGTMLDTVVF 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446983|ref|XP_004141249.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 14-like [Cucumis sativus] gi|449498695|ref|XP_004160608.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 14-like [Cucumis sativus]

 Score =  287 bits (735), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 137/142 (96%), Positives = 140/142 (98%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD
Sbjct: 168 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 227

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GLTL RFD HSKTNEQTVQEMLNLA+KYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH
Sbjct: 228 GLTLRRFDTHSKTNEQTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 287

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           VSNLMSSNI+QTLGTMLDTV+F
Sbjct: 288 VSNLMSSNIIQTLGTMLDTVVF 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142339|emb|CBI19542.3| unnamed protein product [Vitis vinifera]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/142 (96%), Positives = 140/142 (98%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD
Sbjct: 162 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 221

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GLTL RFD HSKTNEQTVQEML+LA+KYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH
Sbjct: 222 GLTLKRFDTHSKTNEQTVQEMLSLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 281

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           VSNLMSSNIVQTLGTMLDTV+F
Sbjct: 282 VSNLMSSNIVQTLGTMLDTVVF 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067278|ref|XP_002302444.1| predicted protein [Populus trichocarpa] gi|222844170|gb|EEE81717.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/142 (96%), Positives = 140/142 (98%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD
Sbjct: 168 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 227

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GLTL RFD HSKTNEQTVQEML+LA+KYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH
Sbjct: 228 GLTLRRFDTHSKTNEQTVQEMLSLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 287

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           VSNLMSSNIVQTLGTMLDTV+F
Sbjct: 288 VSNLMSSNIVQTLGTMLDTVVF 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487990|gb|ABK95816.1| unknown [Populus trichocarpa]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/142 (96%), Positives = 140/142 (98%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD
Sbjct: 171 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 230

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GLTL RFD HSKTNEQTVQEML+LA+KYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH
Sbjct: 231 GLTLRRFDTHSKTNEQTVQEMLSLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 290

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           VSNLMSSNIVQTLGTMLDTV+F
Sbjct: 291 VSNLMSSNIVQTLGTMLDTVVF 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458567|ref|XP_002284566.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 [Vitis vinifera] gi|147803561|emb|CAN68719.1| hypothetical protein VITISV_012992 [Vitis vinifera]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/142 (96%), Positives = 140/142 (98%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD
Sbjct: 168 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 227

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GLTL RFD HSKTNEQTVQEML+LA+KYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH
Sbjct: 228 GLTLKRFDTHSKTNEQTVQEMLSLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 287

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           VSNLMSSNIVQTLGTMLDTV+F
Sbjct: 288 VSNLMSSNIVQTLGTMLDTVVF 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538376|ref|XP_002510253.1| 26S proteasome non-ATPase regulatory subunit, putative [Ricinus communis] gi|223550954|gb|EEF52440.1| 26S proteasome non-ATPase regulatory subunit, putative [Ricinus communis]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/142 (96%), Positives = 139/142 (97%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD
Sbjct: 171 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 230

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GLTL RFD HSKTNEQTVQEMLNLA+KYNKAVQEEDELPPEKL IANVGRQDAKKHLEEH
Sbjct: 231 GLTLKRFDTHSKTNEQTVQEMLNLAIKYNKAVQEEDELPPEKLVIANVGRQDAKKHLEEH 290

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           VSNLMSSNIVQTLGTMLDTV+F
Sbjct: 291 VSNLMSSNIVQTLGTMLDTVVF 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224284722|gb|ACN40092.1| unknown [Picea sitchensis]

 Score =  286 bits (731), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 136/142 (95%), Positives = 140/142 (98%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD
Sbjct: 167 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 226

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GLTL RFDCHSKTNEQTVQEML+LA+KYNKAVQEED+L PEKLAIANVGRQDAKKHLEEH
Sbjct: 227 GLTLQRFDCHSKTNEQTVQEMLDLAIKYNKAVQEEDQLTPEKLAIANVGRQDAKKHLEEH 286

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           VSNLMSSNIVQTLGTMLDTV+F
Sbjct: 287 VSNLMSSNIVQTLGTMLDTVVF 308

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125552076|gb|EAY97785.1| hypothetical protein OsI_19702 [Oryza sativa Indica Group]

 Score =  285 bits (729), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 136/142 (95%), Positives = 139/142 (97%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
           MMLGQEPRQTTSN+GHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD
Sbjct: 166 MMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 225

Query: 61  GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
           GL L RFD HSKTNEQTVQEMLNLA+KYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH
Sbjct: 226 GLILKRFDTHSKTNEQTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 285

Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
           VSNLMSSNIVQTLGTMLDTV+F
Sbjct: 286 VSNLMSSNIVQTLGTMLDTVVF 307

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2171696	308	AT5G23540 "AT5G23540" [Arabido	1.0	0.461	0.830	4e-58
UNIPROTKB|E1C6N0	300	PSMD14 "Uncharacterized protei	1.0	0.473	0.647	1.9e-44
UNIPROTKB|Q17QP9	310	PSMD14 "Proteasome (Prosome, m	1.0	0.458	0.647	1.9e-44
UNIPROTKB|O00487	310	PSMD14 "26S proteasome non-ATP	1.0	0.458	0.647	1.9e-44
UNIPROTKB|F1RPQ3	310	PSMD14 "Uncharacterized protei	1.0	0.458	0.647	1.9e-44
MGI|MGI:1913284	310	Psmd14 "proteasome (prosome, m	1.0	0.458	0.647	1.9e-44
RGD|1594532	310	Psmd14 "proteasome (prosome, m	1.0	0.458	0.647	1.9e-44
UNIPROTKB|F1LMW6	294	Psmd14 "Protein Psmd14" [Rattu	1.0	0.482	0.647	1.9e-44
ZFIN|ZDB-GENE-070410-56	310	psmd14 "proteasome (prosome, m	1.0	0.458	0.647	2.4e-44
FB|FBgn0028694	308	Rpn11 "Regulatory particle non	1.0	0.461	0.591	3.2e-42

TAIR|locus:2171696 AT5G23540 "AT5G23540" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 118/142 (83%), Positives = 121/142 (85%)

Query:     1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTD 60
             +MLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYR                WTD
Sbjct:   167 IMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 226

Query:    61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
             GLTL RFD HSKTNEQTVQEML+LA KYNKAVQEEDEL PEKLAI NVGRQDAKKHLEEH
Sbjct:   227 GLTLRRFDTHSKTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEH 286

Query:   121 VSNLMSSNIVQTLGTMLDTVIF 142
             VSNLMSSNIVQTLGTMLDTV+F
Sbjct:   287 VSNLMSSNIVQTLGTMLDTVVF 308

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0005634 "nucleus" evidence=TAS

GO:0030163 "protein catabolic process" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0000502 "proteasome complex" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|E1C6N0 PSMD14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 92/142 (64%), Positives = 104/142 (73%)

Query:     1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTD 60
             M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYR                W +
Sbjct:   158 MVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWME 217

Query:    61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
             GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE+LAI NVG+QD K+HLEEH
Sbjct:   218 GLTLQDYSEHCKLNETVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEH 277

Query:   121 VSNLMSSNIVQTLGTMLDTVIF 142
             V  LM+SNIVQ L  MLDTV+F
Sbjct:   278 VDVLMTSNIVQCLAAMLDTVVF 299

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

UNIPROTKB|Q17QP9 PSMD14 "Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 14" [Bos taurus (taxid:9913)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 92/142 (64%), Positives = 104/142 (73%)

Query:     1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTD 60
             M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYR                W +
Sbjct:   168 MVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWME 227

Query:    61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
             GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE+LAI NVG+QD K+HLEEH
Sbjct:   228 GLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEH 287

Query:   121 VSNLMSSNIVQTLGTMLDTVIF 142
             V  LM+SNIVQ L  MLDTV+F
Sbjct:   288 VDVLMTSNIVQCLAAMLDTVVF 309

GO:0004221 "ubiquitin thiolesterase activity" evidence=IDA

GO:0070628 "proteasome binding" evidence=IDA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

UNIPROTKB|O00487 PSMD14 "26S proteasome non-ATPase regulatory subunit 14" [Homo sapiens (taxid:9606)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 92/142 (64%), Positives = 104/142 (73%)

Query:     1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTD 60
             M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYR                W +
Sbjct:   168 MVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWME 227

Query:    61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
             GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE+LAI NVG+QD K+HLEEH
Sbjct:   228 GLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEH 287

Query:   121 VSNLMSSNIVQTLGTMLDTVIF 142
             V  LM+SNIVQ L  MLDTV+F
Sbjct:   288 VDVLMTSNIVQCLAAMLDTVVF 309

GO:0046872 "metal ion binding" evidence=IEA

GO:0000502 "proteasome complex" evidence=TAS

GO:0004221 "ubiquitin thiolesterase activity" evidence=IMP;TAS

GO:0008237 "metallopeptidase activity" evidence=TAS

GO:0070536 "protein K63-linked deubiquitination" evidence=IMP;TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0061133 "endopeptidase activator activity" evidence=IMP

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IMP

GO:0070628 "proteasome binding" evidence=IDA

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=IMP

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IMP

GO:0000724 "double-strand break repair via homologous recombination" evidence=IMP

GO:0022624 "proteasome accessory complex" evidence=ISS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0010950 "positive regulation of endopeptidase activity" evidence=IMP

UNIPROTKB|F1RPQ3 PSMD14 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 92/142 (64%), Positives = 104/142 (73%)

Query:     1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTD 60
             M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYR                W +
Sbjct:   168 MVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWME 227

Query:    61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
             GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE+LAI NVG+QD K+HLEEH
Sbjct:   228 GLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEH 287

Query:   121 VSNLMSSNIVQTLGTMLDTVIF 142
             V  LM+SNIVQ L  MLDTV+F
Sbjct:   288 VDVLMTSNIVQCLAAMLDTVVF 309

GO:0070628 "proteasome binding" evidence=IEA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

MGI|MGI:1913284 Psmd14 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 14" [Mus musculus (taxid:10090)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 92/142 (64%), Positives = 104/142 (73%)

Query:     1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTD 60
             M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYR                W +
Sbjct:   168 MVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWME 227

Query:    61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
             GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE+LAI NVG+QD K+HLEEH
Sbjct:   228 GLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEH 287

Query:   121 VSNLMSSNIVQTLGTMLDTVIF 142
             V  LM+SNIVQ L  MLDTV+F
Sbjct:   288 VDVLMTSNIVQCLAAMLDTVVF 309

GO:0000502 "proteasome complex" evidence=ISS

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008152 "metabolic process" evidence=ISS

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=ISO

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=ISO

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISO

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO

GO:0070628 "proteasome binding" evidence=ISO

RGD|1594532 Psmd14 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 14" [Rattus norvegicus (taxid:10116)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 92/142 (64%), Positives = 104/142 (73%)

Query:     1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTD 60
             M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYR                W +
Sbjct:   168 MVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWME 227

Query:    61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
             GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE+LAI NVG+QD K+HLEEH
Sbjct:   228 GLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEH 287

Query:   121 VSNLMSSNIVQTLGTMLDTVIF 142
             V  LM+SNIVQ L  MLDTV+F
Sbjct:   288 VDVLMTSNIVQCLAAMLDTVVF 309

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISO

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=ISO

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=ISO

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISO

GO:0022624 "proteasome accessory complex" evidence=ISO

GO:0061133 "endopeptidase activator activity" evidence=ISO

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISO

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO

GO:0070628 "proteasome binding" evidence=ISO

UNIPROTKB|F1LMW6 Psmd14 "Protein Psmd14" [Rattus norvegicus (taxid:10116)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 92/142 (64%), Positives = 104/142 (73%)

Query:     1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTD 60
             M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYR                W +
Sbjct:   152 MVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWME 211

Query:    61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
             GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE+LAI NVG+QD K+HLEEH
Sbjct:   212 GLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEH 271

Query:   121 VSNLMSSNIVQTLGTMLDTVIF 142
             V  LM+SNIVQ L  MLDTV+F
Sbjct:   272 VDVLMTSNIVQCLAAMLDTVVF 293

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

ZFIN|ZDB-GENE-070410-56 psmd14 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 14" [Danio rerio (taxid:7955)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 92/142 (64%), Positives = 104/142 (73%)

Query:     1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTD 60
             M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYR                W +
Sbjct:   168 MVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWME 227

Query:    61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
             GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE+LAI NVG+QD K+HLEEH
Sbjct:   228 GLTLQDYSEHCKLNETIVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEH 287

Query:   121 VSNLMSSNIVQTLGTMLDTVIF 142
             V  LM+SNIVQ L  MLDTV+F
Sbjct:   288 VDVLMTSNIVQCLAAMLDTVVF 309

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0028694 Rpn11 "Regulatory particle non-ATPase 11" [Drosophila melanogaster (taxid:7227)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 84/142 (59%), Positives = 105/142 (73%)

Query:     1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTD 60
             ++LGQEPRQTTSNLGHL KPS+QALIHGLNRHYYSI+INYR                W D
Sbjct:   166 LVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWKD 225

Query:    61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
             GLTL  ++ H   NE TV EML+LA  YNK++++E+++ PE+LAI NVG+QD K+HLEE 
Sbjct:   226 GLTLSDYNEHCSINEDTVAEMLDLAKNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEK 285

Query:   121 VSNLMSSNIVQTLGTMLDTVIF 142
             V  +M +NIVQ LG MLDT++F
Sbjct:   286 VDKVMQNNIVQCLGAMLDTIVF 307

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=ISS;NAS

GO:0005838 "proteasome regulatory particle" evidence=ISS;IDA

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0006508 "proteolysis" evidence=ISS;IMP;IDA

GO:0009987 "cellular process" evidence=IMP

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00487	PSDE_HUMAN	3, ., 4, ., 1, 9, ., -	0.7464	1.0	0.4580	yes	no
O35593	PSDE_MOUSE	3, ., 4, ., 1, 9, ., -	0.7464	1.0	0.4580	yes	no
Q9LT08	PSDE_ARATH	3, ., 4, ., 1, 9, ., -	0.9436	1.0	0.4610	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_400098	SubName- Full=Putative uncharacterized protein; (312 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00150698	hypothetical protein (386 aa)				•	•	•			0.738
	eugene3.00120862	hypothetical protein (386 aa)				•	•	•			0.730
	estExt_fgenesh4_pg.C_LG_VIII0552	hypothetical protein (311 aa)				•	•	•	•	•	0.690
	estExt_fgenesh4_pg.C_LG_VII0646	SubName- Full=Putative uncharacterized protein; (442 aa)				•	•	•	•		0.685
	estExt_fgenesh4_pm.C_LG_I0989	hypothetical protein (1004 aa)				•	•	•	•		0.675
	eugene3.00050260	hypothetical protein (442 aa)				•	•	•	•		0.674
	eugene3.00061745	hypothetical protein; The proteasome is a multicatalytic proteinase complex which is characteri [...] (245 aa)				•	•	•	•		0.671
	estExt_fgenesh4_pm.C_LG_X0754	SubName- Full=Putative uncharacterized protein; (311 aa)				•	•	•	•	•	0.666
	estExt_Genewise1_v1.C_LG_XVIII1299	hypothetical protein; The proteasome is a multicatalytic proteinase complex which is characteri [...] (245 aa)				•	•	•	•		0.664
	eugene3.00170157	hypothetical protein (1006 aa)				•	•	•	•		0.658

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
cd08069	268	cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: p	2e-38
pfam13012	115	pfam13012, MitMem_reg, Maintenance of mitochondria	2e-22

>gnl|CDD|163700 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

 Score =  130 bits (329), Expect = 2e-38
 Identities = 58/123 (47%), Positives = 78/123 (63%), Gaps = 8/123 (6%)

Query: 2   MLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDG 61
               EPRQTTSN+GHL KP I+    G N+ YYS+ I Y K+ L+ K+LLNL  K W + 
Sbjct: 149 YKPLEPRQTTSNIGHLPKPKIE-DFGGHNKQYYSLPIEYFKSSLDRKLLLNLWNKYWVNT 207

Query: 62  LTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQD-----AKKH 116
           L+L     +S  NE T++++L+LA K  KA Q+E+ L  E+L IANVG+ D     +K H
Sbjct: 208 LSLSPLLENS--NEYTIKQILDLAEKLEKAEQQEERLTGEELDIANVGKLDKARDSSKIH 265

Query: 117 LEE 119
           LEE
Sbjct: 266 LEE 268

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations in Rpn11 cause cell cycle and mitochondrial defects, temperature sensitivity and sensitivity to DNA damaging reagents such as UV. It has been shown that the C-terminal region of Rpn11 is involved in the regulation of the mitochondrial fission and tubulation processes. CSN5, one of the eight subunits of CSN, is critical for nuclear export and the degradation of several tumor suppressor proteins, including p53, p27, and Smad4. Its MPN+ domain is critical for the physical interaction of RUNX3 and Jab1. It has been suggested that the direct interaction of CSN5/JAB1 with p27 provides p27 with a leucine-rich nuclear export signal (NES), which is required for binding to chromosomal region maintenance 1 (CRM1), and facilitates nuclear export. The over-expression of CSN5/JAB1 also has been implicated in cancer initiation and progression, including cancer of the lung, pancreas, mouth, thyroid, and breast, suggesting that the oncogenic activity of CSN5 is associated with the down-regulation of RUNX3. Length = 268

>gnl|CDD|205193 pfam13012, MitMem_reg, Maintenance of mitochondrial structure and function

 Score = 85.3 bits (212), Expect = 2e-22
 Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 21/130 (16%)

Query: 5   QEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTL 64
           QE  Q            ++ L+ GLNRHYYS  ++ RK ELE+K L NLHK+ WT GL L
Sbjct: 1   QEAEQI----------GVEHLLRGLNRHYYS-TLS-RKLELEQKALKNLHKRLWTIGLYL 48

Query: 65  HRFDC----HSKTNEQTVQEMLNLAVKY-NKAVQEEDELP-PEKLAIANVGRQDAKKHLE 118
                     +    + +Q +LNL   Y NK  +EE  +   ++L +  +G+ D K+H  
Sbjct: 49  EDVIDGKLPPNHEILRKLQSLLNLLPNYDNKEFEEEFNVETNDQLLVVYLGKLDRKQH-- 106

Query: 119 EHVSNLMSSN 128
             +  L+++N
Sbjct: 107 -ALHELINNN 115

This is C-terminal to the Mov24 region of the yeast proteasomal subunit Rpn11 and seems likely to regulate the mitochondrial fission and tubulation processes, ie the outer mitochondrial membrane proteins. This function appears to be unrelated to the proteasome activity of the N-terminal region. Length = 115

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
KOG1555	316	consensus 26S proteasome regulatory complex, subun	100.0
cd08069	268	MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal	99.89
PF13012	115	MitMem_reg: Maintenance of mitochondrial structure	99.56
cd08065	266	MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi	95.14

>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-37  Score=264.25  Aligned_cols=139  Identities=40%  Similarity=0.543  Sum_probs=135.4

Q ss_pred             CCCCCCCcccccccccccc-hhHHHHHHhcCCccceeeeeeeCCHHHHHHHhhccccCccccCcccchhhhhhhhHHHHH
Q 032384            1 MMLGQEPRQTTSNLGHLNK-PSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDCHSKTNEQTVQ   79 (142)
Q Consensus         1 ~m~gqEPRQTTSNiGhL~K-Psi~AliHGLnr~YYSi~I~yrkn~lEq~MLlnLhKk~W~~gL~l~~f~~~~~~N~~~~~   79 (142)
                      ++.|+||||||||+||+.+ ||+|+.+|||| ||||+.|.||+++.|+.|++|+|+++|.++ +..+|.++.+.|+..+.
T Consensus       177 ~~~~~eprqtts~~~~m~~~~s~q~~~~g~n-~y~~~ei~~~v~~~~~~~~~nv~~~s~~~~-~~~~y~e~~k~~~~~~~  254 (316)
T KOG1555|consen  177 ISPGGEPRQTTSNGGHMDMQESLQEDIHGLN-RYYRIEIPLHVLPYEQLMLLNVPLKSWKSL-QDVLYEEKLKAYLQSVP  254 (316)
T ss_pred             ccCCCCCccccccccccccchhHHhHhhccC-ceEEEEeeEEechhhhhchhccchhhhhhc-chhhHHHHHHHhhhhhh
Confidence            3678999999999999999 99999999999 999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHHHHhHhhhCCChhhHhhhhcCccChHHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q 032384           80 EMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVI  141 (142)
Q Consensus        80 ~m~~La~~Y~k~i~eE~~~t~eql~i~~VGK~DpKkhL~e~v~~lm~~Nivq~l~~ml~~~~  141 (142)
                      .|.+|++.|++.+++|+.+++.+++|.++|++|||+||++.+.+.+.+||+|+|++|+++++
T Consensus       255 ~~~sL~~~~N~~~~~~k~~~~~~~~i~d~~~~~~kq~l~~~v~~~~~~nl~~~l~~~~~~~~  316 (316)
T KOG1555|consen  255 SMKSLSKVYNKVCDVCKQMSDFLLMIEDVGEQNPKQHLKEAVTELLSENLVQELGSMERRVS  316 (316)
T ss_pred             HHHhHHHHHHHHHHHHhhccHHHHHHHHhhhhhHHHHhHHHhhhhcccchhhcchhhhhccC
Confidence            99999999999999999999999999999999999999999999999999999999998763

>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

Probab=99.89  E-value=4.9e-24  Score=177.13  Aligned_cols=111  Identities=52%  Similarity=0.788  Sum_probs=107.6

Q ss_pred             CCcccccccccccchhHHHHHHhcCCccceeeeeeeCCHHHHHHHhhccccCccccCcccchhhhhhhhHHHHHHHHHHH
Q 032384            6 EPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDCHSKTNEQTVQEMLNLA   85 (142)
Q Consensus         6 EPRQTTSNiGhL~KPsi~AliHGLnr~YYSi~I~yrkn~lEq~MLlnLhKk~W~~gL~l~~f~~~~~~N~~~~~~m~~La   85 (142)
                      |||+||||.|++.+|+++ ..+|++++||+|+|.||++++|+.||.+|+++.|.++|.+.+|..++  |...++.|.+|+
T Consensus       153 ~~~~~~s~~~~~~~~~~~-~~~~~~~~y~~l~i~~~~s~l~~~~L~~l~~~~w~~~l~~~~~~~~~--~~~~~~~~~~l~  229 (268)
T cd08069         153 EPRQTTSNIGHLPKPKIE-DFGGHNKQYYSLPIEYFKSSLDRKLLLNLWNKYWVNTLSLSPLLENS--NEYTIKQILDLA  229 (268)
T ss_pred             CcccCccccCccCcHHHH-HhCchhcEEEEeeeEEecCHHHHHHHHHHHHHhHHHHhhCCchhhhh--hHHHHHHHHHHH
Confidence            799999999999999999 99999999999999999999999999999999999999999998887  899999999999


Q ss_pred             HHHHHHhHhhhCCChhhHhhhhcCccC-----hHHHHHH
Q 032384           86 VKYNKAVQEEDELPPEKLAIANVGRQD-----AKKHLEE  119 (142)
Q Consensus        86 ~~Y~k~i~eE~~~t~eql~i~~VGK~D-----pKkhL~e  119 (142)
                      ++|++.+.+|..++++++..+++||+|     ||+|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (268)
T cd08069         230 EKLEKAEQQEERLTGEELDIANVGKLDKARDSSKIHLEE  268 (268)
T ss_pred             HHHHHHHhhhhccChhhhcccchhhhhhccccchhhhcC
Confidence            999999999999999999999999999     9999873

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i

>PF13012 MitMem_reg: Maintenance of mitochondrial structure and function; PDB: 2O96_B 2O95_A

Probab=99.56  E-value=3.5e-16  Score=113.25  Aligned_cols=109  Identities=25%  Similarity=0.373  Sum_probs=13.5

Q ss_pred             CCCcccccccccccchhHHHHHHhcCCccceeeeeeeCCHHHHHHHhhccccCccccCcccch----hhhhhhhHHHHHH
Q 032384            5 QEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRF----DCHSKTNEQTVQE   80 (142)
Q Consensus         5 qEPRQTTSNiGhL~KPsi~AliHGLnr~YYSi~I~yrkn~lEq~MLlnLhKk~W~~gL~l~~f----~~~~~~N~~~~~~   80 (142)
                      +|||++          ++.+++||++++||| +|. +..+-+++||.+||++.|..+.-++++    ...+..+...+.+
T Consensus         1 eEaEri----------gv~~l~~~~~~~~~s-~~~-~~l~~~~~al~~L~~~l~~i~~Yl~~v~~g~~~~d~~i~r~l~~   68 (115)
T PF13012_consen    1 EEAERI----------GVDHLARGLGDHYYS-SLS-SQLENEQNALKMLHKRLWQILDYLEDVISGEIPPDHEILRQLQD   68 (115)
T ss_dssp             SHHHHH----------HHHHHHHH--S-----------------------------------------------------
T ss_pred             CchHHH----------HHHHHHccCCCcccc-HHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcCCCchhHHHHHHH
Confidence            478888          899999999999999 999 999999999999999999999999999    8888889999999


Q ss_pred             HHHHHHHH-HHHhHhhhCC-ChhhHhhhhcCccChHHHHHHHHHHHHHHh
Q 032384           81 MLNLAVKY-NKAVQEEDEL-PPEKLAIANVGRQDAKKHLEEHVSNLMSSN  128 (142)
Q Consensus        81 m~~La~~Y-~k~i~eE~~~-t~eql~i~~VGK~DpKkhL~e~v~~lm~~N  128 (142)
                      ++.++..| .+.+++|... +.+.+.|.++|+++|+.|   .+.++++.|
T Consensus        69 l~~~lp~~~~~~~~~~~~~~~~D~l~v~yL~~l~k~~~---~l~e~l~~~  115 (115)
T PF13012_consen   69 LLSSLPKYDPEEFEEEFNSEINDVLMVSYLAKLTKKQH---ALNELLNNN  115 (115)
T ss_dssp             --------------------------------------------------
T ss_pred             HHHhcccccHHHHHHHHHhhchHHHHHHHHHHHhHHHH---HHHHHHhcC
Confidence            99999999 9999888887 778999999999999999   566666554

>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

Probab=95.14  E-value=0.11  Score=43.34  Aligned_cols=47  Identities=15%  Similarity=0.236  Sum_probs=42.4

Q ss_pred             ccccccchhHHHHHHhcCCccceeeeeeeCCHHHHHHHhhccccCcc
Q 032384           13 NLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWT   59 (142)
Q Consensus        13 NiGhL~KPsi~AliHGLnr~YYSi~I~yrkn~lEq~MLlnLhKk~W~   59 (142)
                      --|+++++++++.-.+.+..|+.|||..|.+.|++.||..|....=.
T Consensus       143 ~~~~~~~~~l~~~~~~~~~if~eiPv~i~n~~l~~~~L~~l~~~~~~  189 (266)
T cd08065         143 KEGKFSTESLREANLTFSNIFEEIPVVIRNSHLVNALLSELEEDSPS  189 (266)
T ss_pred             hcCCcCHHHHHHhcCchhcEEEEEEEEEEchHHHHHHHHhcccCCCc
Confidence            34899999999999999999999999999999999999999775443

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
4b4t_V	306	Near-Atomic Resolution Structural Model Of The Yeas		3e-21

>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 306

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 79/135 (58%)
Query: 6   EPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLH 65
           EPRQTTSN G LNK +IQALIHGLNRHYYS+ I+Y                 W  GL ++
Sbjct: 169 EPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMY 228
Query: 66  RFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLM 125
            ++   ++N    + M+ +A +Y+K ++EE EL  E+L    VGRQD KKHL E     +
Sbjct: 229 DYEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETL 288
Query: 126 SSNIVQTLGTMLDTV 140
            +NIV  L   +++V
Sbjct: 289 ENNIVSVLTAGVNSV 303

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
3rzv_A	211	STAM-binding protein; ubiquitin hydrolase, endosom	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
2znr_A	178	AMSH-like protease; metal binding protein, alterna	2e-05

>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Length = 211

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 5/41 (12%), Positives = 10/41 (24%)

Query: 1   MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYR 41
           +      RQ   +    + P   +  H           + R
Sbjct: 171 LEEISSCRQKGFHPHSKDPPLFCSCSHVTVVDRAVTITDLR 211

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 8e-06
 Identities = 29/194 (14%), Positives = 67/194 (34%), Gaps = 64/194 (32%)

Query: 13  NLGHLNKPS-----IQALIHGLNRHY-----YSIAINYRKNELEEKMLLNLHKKKWTDGL 62
           NL + N P      +Q L++ ++ ++     +S  I  R + ++ ++   L  K + + L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 63  ----------TLHRFDCHSK----TNEQTVQEMLNLAVKYNKAVQE------EDE----- 97
                       + F+   K    T  + V + L+ A   + ++         DE     
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 98  ----------LPPEK-----LAIANVGR--QDAKKHLE--EHVSNLMSSNIVQTLGTMLD 138
                     LP E        ++ +    +D     +  +HV+    + I+++   +L+
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 139 T----------VIF 142
                       +F
Sbjct: 368 PAEYRKMFDRLSVF 381

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.5 bits (86), Expect = 8e-04
 Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 34/123 (27%)

Query: 8   RQTTSNLGHLNKPSIQALIHGLNRHYY-SIAINYRKN-----------------ELEEKM 49
                 L  + + S+  L     R  +  +++ +  +                      +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 50  LLNLHKK----KWTDGLTLHRFDCHSKTNEQTVQE------MLNLAVKYN--KAVQEEDE 97
           +  LHK     K     T+     + +   +   E      +++    YN  K    +D 
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD---HYNIPKTFDSDDL 464

Query: 98  LPP 100
           +PP
Sbjct: 465 IPP 467

>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Length = 178

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 2   MLGQEPRQTTSNLGHLNKPSIQALI-HGLNRHYYSIAINYR 41
           ML     +      H  +P + ++  H L +    I ++ R
Sbjct: 138 MLEVSACKKKGFHPHTKEPRLFSICKHVLVKDIKIIVLDLR 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
4b4t_V	306	26S proteasome regulatory subunit RPN11; hydrolase	100.0

>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-40  Score=274.62  Aligned_cols=140  Identities=47%  Similarity=0.752  Sum_probs=106.1

Q ss_pred             CCCCCcccccccccccchhHHHHHHhcCCccceeeeeeeCCHHHHHHHhhccccCccccCcccchhhhhhhhHHHHHHHH
Q 032384            3 LGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDCHSKTNEQTVQEML   82 (142)
Q Consensus         3 ~gqEPRQTTSNiGhL~KPsi~AliHGLnr~YYSi~I~yrkn~lEq~MLlnLhKk~W~~gL~l~~f~~~~~~N~~~~~~m~   82 (142)
                      .+++|||+|||.|++.+|+++++.||++++|||++|+|+|+++|++||.+|+++.|..+|.+.+|.++.+.|.+.++.|+
T Consensus       166 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~~~~~~i~~m~  245 (306)
T 4b4t_V          166 NNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSMV  245 (306)
T ss_dssp             CCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHHHHHHHHHHHS
T ss_pred             cccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHhhhCCChhhHhhhhcCccChHHHHHHHHHHHHHHhHHHHHHHhhhhccC
Q 032384           83 NLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF  142 (142)
Q Consensus        83 ~La~~Y~k~i~eE~~~t~eql~i~~VGK~DpKkhL~e~v~~lm~~Nivq~l~~ml~~~~f  142 (142)
                      +++++|.|.|++|+.++++++++++|||+||||||++.++++|++||+|+||+|||+++|
T Consensus       246 ~~~~~y~k~v~~e~~~~~~~l~~~~vgk~dp~~~l~~~~~~l~~~ni~~~l~~~~~~~~~  305 (306)
T 4b4t_V          246 KIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTAGVNSVAI  305 (306)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHTCSCSSCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccccCCHHHHHhhccCccChHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            999999999999999999999999999999999999999999999999999999999998

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00