Citrus Sinensis ID: 032385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MASQQAGQEIPQTNAQTACQPQPVPDAVIQEALDNLASISQSAQNDNTYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMNADNTDTTLPIDHSAGAGTGTTATHPSSLNAEHPSNPTNNINITTTNPRI
Secondary Structure (PSIPRED)
cHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcccccccccHHHccccccccHHHHHHHHHHHHHHcHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
masqqagqeipqtnaqtacqpqpvpdAVIQEALDNLASISqsaqndntYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQGAAHAVKntlgmnadntdttlpidhsagagtgttathpsslnaehpsnptnninitttnpri
Flexible Loop (DISEMBL)
masqqagqeipqtnaqtacqPQPVPDAVIQEALDNLASISQSAQNDNTYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMNADNTDTTLPIDHSAGAGTGTTATHPSslnaehpsnptnninitttnpri
Low Complexity Region (SEG)
MASQQAGQEIPQTNAQTACQPQPVPDAVIQEALDNLASISQSAQNDNTYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMNADNTDTTLPIDHSagagtgttatHPSSLNAEHPSnptnninitttnpRI
Disordered region (IsUnstruct)
**********************************************************************************************************************************************
Disordered Region (DISOPRED)
**************************AVIQEAL********************************************MAQGAAHAVKNTLGMNADNTDTTLPID**************************************
Disordered Region (DISEMBL)
******************CQPQPVPDAVIQEALDNLASISQSAQNDNTYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMNADNTDTTLPIDHSAGAGTGTTATHPSSLNAEHPSNPTNNINITTTNPRI
Disordered Region (DISPRO)
********EIPQTNAQTACQPQPVPDAVIQEALDNLASISQS*QNDNTYKTQATNLLQQTGEQVKNMAQGAGEQVKNMA***************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASQQAGQEIPQTNAQTACQPQPVPDAVIQEALDNLASISQSAQNDNTYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMNADNTDTTLPIDHSAGAGTGTTATHPSSLNAEHPSNPTNNINITTTNPRI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
225442851	102	PREDICTED: late embryogenesis abundant p	0.535	0.745	0.431	5e-07
255553085	136	conserved hypothetical protein [Ricinus	0.316	0.330	0.596	2e-06
224058697	104	predicted protein [Populus trichocarpa]	0.704	0.961	0.401	5e-06
449436603	121	PREDICTED: late embryogenesis abundant p	0.295	0.347	0.566	0.0005

>gi|225442851|ref|XP_002285364.1| PREDICTED: late embryogenesis abundant protein 76 isoform 1 [Vitis vinifera] gi|359483015|ref|XP_003632880.1| PREDICTED: late embryogenesis abundant protein 76 isoform 2 [Vitis vinifera] gi|297743399|emb|CBI36266.3| unnamed protein product [Vitis vinifera]

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 19/95 (20%)

Query: 48  TYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMNADNTDTTLPIDHSA 107
           +Y  QA++ LQQTGEQVKN           MAQGAA AVK+TLGMN +N       D+SA
Sbjct: 27  SYTQQASSFLQQTGEQVKN-----------MAQGAAEAVKSTLGMNNENA------DNSA 69

Query: 108 GAGTGTTATHPSSLNAEHPSNPTNNINITTTNPRI 142
            A   +  ++P  +N  +PSN +N  N++    RI
Sbjct: 70  TANIPSNTSNP--INPSNPSNLSNPSNLSNPTTRI 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553085|ref|XP_002517585.1| conserved hypothetical protein [Ricinus communis] gi|223543217|gb|EEF44749.1| conserved hypothetical protein [Ricinus communis]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 39/57 (68%), Gaps = 12/57 (21%)

Query: 41 QSAQNDNTYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMNADNT 97
          QS Q D +Y TQATN LQQTGEQVK+MAQGA E           AVKNTLGM A+++
Sbjct: 35 QSGQ-DQSYTTQATNFLQQTGEQVKSMAQGAAE-----------AVKNTLGMTAESS 79

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058697|ref|XP_002299608.1| predicted protein [Populus trichocarpa] gi|222846866|gb|EEE84413.1| predicted protein [Populus trichocarpa]

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 67/127 (52%), Gaps = 27/127 (21%)

Query: 7   GQEIPQTNAQTACQPQPVPDAVIQEALDNLASISQSAQNDNTYKTQATNLLQQTGEQVKN 66
           G +I     + A Q Q   D V+ +  + L   +QS Q D++Y  QA++ L QTGEQVKN
Sbjct: 5   GNDITYNAGELAGQAQAKKDDVMDQCQEGL---NQSTQ-DSSYTAQASSFLHQTGEQVKN 60

Query: 67  MAQGAGEQVKNMAQGAAHAVKNTLGMNADNTDTTLPIDHSAGAGTGTTATHPSSLNAEHP 126
                      MAQGAA AVKNTLGMN +NT TT            ++  HP  +N  +P
Sbjct: 61  -----------MAQGAAEAVKNTLGMNTENTPTT----------NTSSLNHP--INPSNP 97

Query: 127 SNPTNNI 133
           SNP+  I
Sbjct: 98  SNPSTRI 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436603|ref|XP_004136082.1| PREDICTED: late embryogenesis abundant protein 1-like [Cucumis sativus] gi|449491129|ref|XP_004158809.1| PREDICTED: late embryogenesis abundant protein 1-like [Cucumis sativus]

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 32/53 (60%), Gaps = 11/53 (20%)

Query: 40 SQSAQNDNTYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGM 92
          S +AQ     K QA + LQQTGEQVKN           MAQGAA AVKNTLGM
Sbjct: 35 SSAAQTATDLKDQAASFLQQTGEQVKN-----------MAQGAAEAVKNTLGM 76

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2140842	109	UNE15 "AT4G13560" [Arabidopsis	0.626	0.816	0.389	1.6e-08
TAIR|locus:2035134	114	AT1G52680 "AT1G52680" [Arabido	0.5	0.622	0.389	2.1e-06
TAIR|locus:2093307	225	AT3G15670 "AT3G15670" [Arabido	0.654	0.413	0.34	3.7e-06
TAIR|locus:2035109	169	LEA7 "AT1G52690" [Arabidopsis	0.661	0.556	0.313	4.3e-06
TAIR|locus:2823550	96	AT1G15415 "AT1G15415" [Arabido	0.309	0.458	0.436	0.00021
TAIR|locus:2166630	67	AT5G38760 "AT5G38760" [Arabido	0.345	0.731	0.377	0.00035

TAIR|locus:2140842 UNE15 "AT4G13560" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 37/95 (38%), Positives = 50/95 (52%)

Query:     2 ASQQAGQ--EIPQTNAQTACQPQPVPDAVIQEALDNLASISQSAQNDNTYKTQATNL-LQ 58
             A ++A Q  E  +  AQ+AC      D + Q A D  A ++QSA++     + + N   Q
Sbjct:    15 AQEKAEQWTESAKQTAQSACDK--TAD-LTQSARDKAADLTQSARDKTADGSHSANKSAQ 71

Query:    59 QTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMN 93
                EQ   +    GE VKNMAQGA   VKN+LGMN
Sbjct:    72 HNQEQAAGLFGQTGESVKNMAQGALDGVKNSLGMN 106

GO:0003674 "molecular_function" evidence=ND

GO:0009793 "embryo development ending in seed dormancy" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2035134 AT1G52680 "AT1G52680" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 30/77 (38%), Positives = 48/77 (62%)

Query:    30 QEALDNLA-SISQSAQNDNTYKTQATNLLQQTG----EQVKNMAQGAGEQVKNMAQGAAH 84
             +E L+N++ +++Q+A +    ++Q  +   Q       Q  ++ Q  G QVKNMAQGAA 
Sbjct:    23 EEYLNNVSHAMNQNADHHTHSQSQLHSEHDQNNPSLISQASSVIQQTGGQVKNMAQGAAD 82

Query:    85 AVKNTLGMN-ADNTDTT 100
             AVKNTLGM+ A N+ ++
Sbjct:    83 AVKNTLGMSPATNSPSS 99

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2093307 AT3G15670 "AT3G15670" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 34/100 (34%), Positives = 44/100 (44%)

Query:     2 ASQQAGQEIPQT----NAQTACQPQPVPDAVIQEALDNLASISQSAQNDNTYKTQATNLL 57
             A+QQ   E  Q+     +QTA   Q       Q A +     SQ+       K +A + L
Sbjct:    67 AAQQKAHETAQSAKEKTSQTAQTAQQKAHETTQAAKEKT---SQAGDKAREAKDKAGSYL 123

Query:    58 QQTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMNADNT 97
              +TGE +KN AQ A +  K  AQGAA   K T     D T
Sbjct:   124 SETGEAIKNKAQDAAQYTKETAQGAAQYTKETAEAGRDKT 163

GO:0003674 "molecular_function" evidence=ND

GO:0009793 "embryo development ending in seed dormancy" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2035109 LEA7 "AT1G52690" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 31/99 (31%), Positives = 43/99 (43%)

Query:     2 ASQQAGQEIPQTNAQTACQPQPVPDAVIQEALDNLAS-ISQSAQNDNTYKTQATNLLQQT 60
             ++QQ   E  Q+      Q         QE+ D   S +S++ +        A    ++T
Sbjct:    46 SAQQKAHETAQSAKDKTSQAAQTTQERAQESKDKTGSYMSETGEAIKNKAHDAAEYTKET 105

Query:    61 GEQVKNMAQG----AGEQVKNMAQGAAHAVKNTLGMNAD 95
              E  K    G     GEQVK MA GA  AVK+TLG+  D
Sbjct:   106 AEAGKEKTSGILGQTGEQVKQMAMGATDAVKHTLGLRTD 144

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009793 "embryo development ending in seed dormancy" evidence=ISS

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2823550 AT1G15415 "AT1G15415" [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 24/55 (43%), Positives = 31/55 (56%)

Query:    44 QNDNTYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMNADNTD 98
             +ND    +QA+  LQQ GE+VK+MA  A E           AVKN LG+N DN +
Sbjct:    24 ENDCNNSSQASGFLQQKGEKVKSMAHDASE-----------AVKNKLGINNDNNE 67

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2166630 AT5G38760 "AT5G38760" [Arabidopsis thaliana (taxid:3702)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query:    41 QSAQNDNTYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMN 93
             Q+ +  +T   +A+N  Q   E +K      G+Q+K  AQGA  +VKN  GMN
Sbjct:    18 QTQEKASTMMDKASNAAQSAKESLKE----TGQQIKEKAQGATESVKNATGMN 66


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.304   0.117   0.317    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142       119   0.00091  102 3  10 23  0.45    31
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  535 (57 KB)
  Total size of DFA:  137 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.52u 0.32s 18.84t   Elapsed:  00:00:01
  Total cpu time:  18.52u 0.32s 18.84t   Elapsed:  00:00:01
  Start:  Sat May 11 03:21:44 2013   End:  Sat May 11 03:21:45 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0019953 "sexual reproduction" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034565001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (102 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
KOG4744	308	consensus Uncharacterized conserved protein [Funct	98.27
KOG4744	308	consensus Uncharacterized conserved protein [Funct	97.35
PF02987	44	LEA_4: Late embryogenesis abundant protein; InterP	94.72
PF02987	44	LEA_4: Late embryogenesis abundant protein; InterP	94.51

>KOG4744 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=2e-06  Score=74.57  Aligned_cols=55  Identities=16%  Similarity=0.142  Sum_probs=42.4

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhHHHHHHHHhHHHHHHHhccCcCCCCCCCCCCCC
Q 032385           52 QATNLLQQTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMNADNTDTTLPIDHS  106 (142)
Q Consensus        52 ktg~~lqQtgEqVK~~A~~gKDkt~~~aQqAgEaVKntaggA~davk~TlGm~~d  106 (142)
                      .+....+-.-+.+.+.+..++|++..+...+++.+..++.++.+.+.+++|+..+
T Consensus       225 ~A~d~a~~~k~~a~~~~~~~~dk~~d~~esak~~a~~~~~~A~~~~~~s~~~a~s  279 (308)
T KOG4744|consen  225 KAKDKAQTVKEKAGEAAEKTKEKAKDAWESAKEGADQMAEGASDAVKESYGSATS  279 (308)
T ss_pred             hhhhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            3333333333333446667889999999999999999999999999999999886

>KOG4744 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.00056  Score=59.62  Aligned_cols=82  Identities=20%  Similarity=0.203  Sum_probs=47.5

Q ss_pred             hcCCCCchHHHHHHHHHhhHHHHHHHhh-hhhhhhh------------------hhhHHHHHHHHHHHhhhhhhhHHHHH
Q 032385           18 ACQPQPVPDAVIQEALDNLASISQSAQN-DNTYKTQ------------------ATNLLQQTGEQVKNMAQGAGEQVKNM   78 (142)
Q Consensus        18 agqAqeKa~etaqsAkdkas~aAQsAke-a~~~kdk------------------tg~~lqQtgEqVK~~A~~gKDkt~~~   78 (142)
                      ++.+++|+.+.++++++++.++++++++ +.+.++.                  +..++.++.|.+|+.++..+|+...+
T Consensus       150 A~~AkdktkdkA~sakeka~e~a~sA~dkA~dake~Ak~~A~d~~d~a~e~~~~A~dk~~et~e~~Kdka~d~~e~A~d~  229 (308)
T KOG4744|consen  150 AGSAKDKAKDKAESAKEKAGEAADSARDKAADAKESAKNKAEDTKDSAPEAAGSAKDKAAETAEKAKDKAQDAKEKAKDK  229 (308)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4455555555555555555555555555 2333333                  66677777777777777777776666


Q ss_pred             HHHhHHHHHHHhccCcCCCCC
Q 032385           79 AQGAAHAVKNTLGMNADNTDT   99 (142)
Q Consensus        79 aQqAgEaVKntaggA~davk~   99 (142)
                      ++...|.+.....-..|.++.
T Consensus       230 a~~~k~~a~~~~~~~~dk~~d  250 (308)
T KOG4744|consen  230 AQTVKEKAGEAAEKTKEKAKD  250 (308)
T ss_pred             hhhHHHHHHHHHHhhhhhhhh
Confidence            666666555555555554443

>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress

Probab=94.72  E-value=0.043  Score=34.59  Aligned_cols=25  Identities=8%  Similarity=0.096  Sum_probs=13.1

Q ss_pred             CCCchHHHHHHHHHhhHHHHHHHhh
Q 032385           21 PQPVPDAVIQEALDNLASISQSAQN   45 (142)
Q Consensus        21 AqeKa~etaqsAkdkas~aAQsAke   45 (142)
                      +.+|+.++.+.+++++.++.+++.+
T Consensus         4 a~~Ka~e~~d~a~~ka~e~kd~a~e   28 (44)
T PF02987_consen    4 AKEKASEAKDAAKEKAGEAKDAAAE   28 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555544444444

The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].

>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress

Probab=94.51  E-value=0.14  Score=32.16  Aligned_cols=41  Identities=15%  Similarity=0.202  Sum_probs=21.2

Q ss_pred             HHHHHhhHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHH
Q 032385           30 QEALDNLASISQSAQNDNTYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQ   80 (142)
Q Consensus        30 qsAkdkas~aAQsAkea~~~kdktg~~lqQtgEqVK~~A~~gKDkt~~~aQ   80 (142)
                      +.+++|+.++...++++          ++++.+.+.+.+...||.++..+.
T Consensus         2 e~a~~Ka~e~~d~a~~k----------a~e~kd~a~eKa~eaKd~a~eka~   42 (44)
T PF02987_consen    2 EAAKEKASEAKDAAKEK----------AGEAKDAAAEKAEEAKDSAKEKAG   42 (44)
T ss_pred             hHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555655555555552          555555555555555555544443

The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
2x43_S	67	Sherp; membrane protein; NMR {Leishmania major}	88.33

>2x43_S Sherp; membrane protein; NMR {Leishmania major}

Probab=88.33  E-value=0.079  Score=36.43  Aligned_cols=20  Identities=25%  Similarity=0.247  Sum_probs=8.3

Q ss_pred             HHHHHHHHHhhHHHHHHHhh
Q 032385           26 DAVIQEALDNLASISQSAQN   45 (142)
Q Consensus        26 ~etaqsAkdkas~aAQsAke   45 (142)
                      .+.+...+|++.+-+|--||
T Consensus        10 ~~~A~E~kd~~~dK~qElKd   29 (67)
T 2x43_S           10 KNAAAEAKDNVHDKIQELKD   29 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333344444433444444

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00