Citrus Sinensis ID: 032389

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MGKLSLCLLLFLCSLAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccccccccccccccccccccccEEEEEccccccccccccccEEEEEcccccEEEEEEEEccccccccccHHHHHccccccccccEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEHcHHHHHccccccEEEEEEEcccHccccHcHEEEEEcccccccccHHHHHcccEEEEcccccccccccccEEEEEccccccEEEEEEEEccccccccccHHHHHHcccccccccccEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MGKLSLCLLLFLCSLAIAAAQSASNVRAtyhlynperigWDLNAARAYCStwdankplawrrkygwtafcgpvgprgqaacgkclrvtnrgtgaqATVRIVDqcsnggldldvgvfrkldtdgkgnaqgHLMVNyqfvncgd
Flexible Loop (DISEMBL)
MGKLSLCLLLFLCSLAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDgkgnaqghlmvnyqfvncgd
Low Complexity Region (SEG)
MGKlslclllflcslAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD
Disordered region (IsUnstruct)
***LSLCLLLFLCSLAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNC**
Disordered Region (DISOPRED)
***LSLCLLLFLCSLAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD
Disordered Region (DISEMBL)
MGKLSLCLLLFLCSLAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD
Disordered Region (DISPRO)
*GKLSLCLLLFLCSLAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKLSLCLLLFLCSLAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
P09761	200	Wound-induced protein WIN	N/A	no	0.852	0.605	0.818	2e-57
P09762	211	Wound-induced protein WIN	N/A	no	0.852	0.573	0.809	2e-56
P29063	147	Pathogenesis-related prot	N/A	no	0.985	0.952	0.735	6e-56
P32045	143	Pathogenesis-related prot	N/A	no	0.957	0.951	0.695	7e-54
P02877	204	Pro-hevein OS=Hevea brasi	N/A	no	0.852	0.593	0.793	4e-53
P29062	147	Pathogenesis-related prot	N/A	no	0.985	0.952	0.728	5e-53
P43082	212	Hevein-like preproprotein	yes	no	0.859	0.575	0.737	3e-50
P28814	125	Barwin OS=Hordeum vulgare	N/A	no	0.859	0.976	0.712	3e-45
P83343	107	Pathogenesis-related prot	N/A	no	0.753	1.0	0.738	2e-44
O64393	148	Wheatwin-2 OS=Triticum ae	N/A	no	0.830	0.797	0.710	2e-43

>sp|P09761|WIN1_SOLTU Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1

 Score =  220 bits (560), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 99/121 (81%), Positives = 110/121 (90%)

Query: 22  SASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAAC 81
           SA NVRATYH+YNP+ +GWDLNA  AYCSTWDANKPL+WR+KYGWTAFCGPVGPRG+ +C
Sbjct: 79  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSC 138

Query: 82  GKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCG 141
           GKCLRVTN  TGAQ TVRIVDQCSNGGLDLDV VFR++DTDG GN QGHL+VNYQFV+CG
Sbjct: 139 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCG 198

Query: 142 D 142
           D
Sbjct: 199 D 199

Solanum tuberosum (taxid: 4113)

>sp|P09762|WIN2_SOLTU Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1

 Score =  217 bits (552), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 98/121 (80%), Positives = 108/121 (89%)

Query: 22  SASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAAC 81
           SA NVRATYH+YNP+ +GWDLNA  AYCSTWDANKP AWR KYGWTAFCGPVGPRG+ +C
Sbjct: 78  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSC 137

Query: 82  GKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCG 141
           GKCLRVTN  TGAQ TVRIVDQCSNGGLDLD+ VF+++DTDG GN QGHL+VNYQFVNCG
Sbjct: 138 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCG 197

Query: 142 D 142
           D
Sbjct: 198 D 198

Solanum tuberosum (taxid: 4113)

>sp|P29063|PR4B_TOBAC Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1

 Score =  215 bits (548), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 103/140 (73%), Positives = 120/140 (85%)

Query: 3   KLSLCLLLFLCSLAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRR 62
           KL + LL+    +A+AAAQSA+NVR+TYHLYNP+ I WDL AA A+C+TWDA+KPLAWR+
Sbjct: 8   KLCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQ 67

Query: 63  KYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTD 122
           KYGWTAFCGP GPRGQ +CG+CLRVTN GTG QATVRIVDQCSNGGLDLDV VF +LDT+
Sbjct: 68  KYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTN 127

Query: 123 GKGNAQGHLMVNYQFVNCGD 142
           G G  QGHL+VNY+FVNC D
Sbjct: 128 GLGYQQGHLIVNYEFVNCND 147

Nicotiana tabacum (taxid: 4097)

>sp|P32045|PRP2_SOLLC Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1

 Score =  208 bits (530), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 96/138 (69%), Positives = 113/138 (81%), Gaps = 2/138 (1%)

Query: 5   SLCLLLFLCSL--AIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRR 62
            LC+  F+ ++  A+AAAQSA+NVRATYHLYNP+ I WDL  A  YC+TWDA+KPL WRR
Sbjct: 6   KLCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRR 65

Query: 63  KYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTD 122
           +YGWTAFCGP GP GQA+CG+CLRVTN GTG Q TVRIVDQC NGGLDLDV VF +LDT+
Sbjct: 66  RYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTN 125

Query: 123 GKGNAQGHLMVNYQFVNC 140
           G G  +G+L VNY+FVNC
Sbjct: 126 GLGYQRGNLNVNYEFVNC 143

Solanum lycopersicum (taxid: 4081)

>sp|P02877|HEVE_HEVBR Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2

 Score =  206 bits (524), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 96/121 (79%), Positives = 105/121 (86%)

Query: 22  SASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAAC 81
           SASNV ATYHLYN +  GWDLNAA AYCSTWDANKP +WR KYGWTAFCGPVG  GQ++C
Sbjct: 69  SASNVLATYHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSC 128

Query: 82  GKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCG 141
           GKCL VTN GTGA+ TVRIVDQCSNGGLDLDV VFR+LDTDGKG  +GH+ VNYQFV+CG
Sbjct: 129 GKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCG 188

Query: 142 D 142
           D
Sbjct: 189 D 189

N-acetyl-D-glucosamine / N-acetyl-D-neuraminic acid binding lectin. Can inhibit fungal growth.

Hevea brasiliensis (taxid: 3981)

>sp|P29062|PR4A_TOBAC Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1

 Score =  205 bits (522), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 102/140 (72%), Positives = 118/140 (84%)

Query: 3   KLSLCLLLFLCSLAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRR 62
           KL + LL+    +A+AAAQSA+NVR+TYHLYNP+ I WDL AA A+C+TWDA+KPLAWR+
Sbjct: 8   KLCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQ 67

Query: 63  KYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTD 122
           KYGWTAFCGP GPRGQ +CG+CLRVTN GTG Q TVRIVDQCSNGGLDLDV VF +LDT+
Sbjct: 68  KYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTN 127

Query: 123 GKGNAQGHLMVNYQFVNCGD 142
           G G  QGHL VNY+FVNC D
Sbjct: 128 GVGYQQGHLTVNYEFVNCND 147

Nicotiana tabacum (taxid: 4097)

>sp|P43082|HEVL_ARATH Hevein-like preproprotein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1

 Score =  196 bits (499), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 101/122 (82%)

Query: 21  QSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAA 80
           +SASNVRATYH YNP +  WDL A  AYCSTWDA+KP AWR KYGWTAFCGP GPRGQA+
Sbjct: 72  ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQAS 131

Query: 81  CGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNC 140
           CGKCLRV N  T A  TVRIVDQCSNGGLDLDV +F ++DTDG G  QGHL+V+YQFV+C
Sbjct: 132 CGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDC 191

Query: 141 GD 142
           G+
Sbjct: 192 GN 193

Arabidopsis thaliana (taxid: 3702)

>sp|P28814|BARW_HORVU Barwin OS=Hordeum vulgare PE=1 SV=1

 Score =  180 bits (456), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/125 (71%), Positives = 99/125 (79%), Gaps = 3/125 (2%)

Query: 21  QSASNVRATYHLYNPERIGWDLNA--ARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQ 78
           Q A++VRATYH Y P +  WDL A    AYC+TWDA+KPL+WR KYGWTAFCGP GPRGQ
Sbjct: 1   QQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQ 60

Query: 79  AACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVG-VFRKLDTDGKGNAQGHLMVNYQF 137
           AACGKCLRVTN  TGAQ T RIVDQC+NGGLDLD   VF K+DT+G G  QGHL VNYQF
Sbjct: 61  AACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQF 120

Query: 138 VNCGD 142
           V+C D
Sbjct: 121 VDCRD 125

May be involved in a defense mechanism. Probable plant lectin. Binds weakly a chitin analog.

Hordeum vulgare (taxid: 4513)

>sp|P83343|PR4_PRUPE Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1

 Score =  177 bits (448), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 92/107 (85%)

Query: 36  ERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQ 95
           + I WDL  A  +C+TWDA+KPL+WR KYGWTAFCGPVGP GQ +CGKCL VTN GTGA+
Sbjct: 1   QNINWDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAK 60

Query: 96  ATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD 142
            TVRIVDQCSNGGLDLDV VF ++DT+G+GNAQGHL+VNY FV+CGD
Sbjct: 61  VTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107

May be involved in protecting plant tissues from pathogen infection.

Prunus persica (taxid: 3760)

>sp|O64393|WHW2_WHEAT Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1

 Score =  173 bits (439), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 94/121 (77%), Gaps = 3/121 (2%)

Query: 25  NVRATYHLYNPERIGWDLNA--ARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACG 82
           NVRATYH Y P +  WDL A    AYC+TWDA+KPL+WR KYGWTAFCGP G  GQAACG
Sbjct: 28  NVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACG 87

Query: 83  KCLRVTNRGTGAQATVRIVDQCSNGGLDLDVG-VFRKLDTDGKGNAQGHLMVNYQFVNCG 141
           KCLRVTN  TGAQ T RIVDQC+NGGLDLD   VF K+DT+G G  QGHL VNYQFV+C 
Sbjct: 88  KCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCR 147

Query: 142 D 142
           D
Sbjct: 148 D 148

Shows antifungal activity towards B.cinerea and towards the wheat-specific pathogenic fungi F.culmorum and F.graminearum (groups 1 and 2).

Triticum aestivum (taxid: 4565)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
224123436	190	predicted protein [Populus trichocarpa]	0.915	0.684	0.815	1e-58
224131254	195	predicted protein [Populus trichocarpa]	0.845	0.615	0.883	1e-58
388895491	142	PR-4 protein [Chimonanthus praecox]	1.0	1.0	0.746	1e-58
224123432	196	predicted protein [Populus trichocarpa]	0.830	0.602	0.881	2e-57
362097039	143	pathogenesis-related protein 4 [Vitis ps	1.0	0.993	0.769	7e-57
42557355	203	pathogenesis-related protein 4b [Capsicu	0.852	0.596	0.851	8e-57
147844408	143	hypothetical protein VITISV_026189 [Viti	0.992	0.986	0.751	8e-57
225453022	143	PREDICTED: pathogenesis-related protein	1.0	0.993	0.762	2e-56
3511147	143	PR-4 type protein [Vitis vinifera] gi|29	1.0	0.993	0.755	2e-56
351721773	142	uncharacterized protein LOC100526916 pre	1.0	1.0	0.725	1e-55

>gi|224123436|ref|XP_002319078.1| predicted protein [Populus trichocarpa] gi|222857454|gb|EEE95001.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/130 (81%), Positives = 117/130 (90%)

Query: 13  CSLAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGP 72
           CS    A +SASNVRATYH YNP++ GWDLNA  AYCSTWDANKPL WRRKYGWTAFCGP
Sbjct: 61  CSPGTGAGESASNVRATYHYYNPDQNGWDLNAVSAYCSTWDANKPLEWRRKYGWTAFCGP 120

Query: 73  VGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLM 132
           VGP GQA+CG+CLRVTN GTGAQATVRIVDQCSNGGLDLD GVF+++DTDG+GNAQGHL+
Sbjct: 121 VGPSGQASCGRCLRVTNTGTGAQATVRIVDQCSNGGLDLDAGVFQQIDTDGRGNAQGHLI 180

Query: 133 VNYQFVNCGD 142
           VNYQFV+CGD
Sbjct: 181 VNYQFVDCGD 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131254|ref|XP_002328493.1| predicted protein [Populus trichocarpa] gi|222838208|gb|EEE76573.1| predicted protein [Populus trichocarpa]

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/120 (88%), Positives = 115/120 (95%)

Query: 21  QSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAA 80
           +SASNVRATYH YNPE+ GWDLNA RAYCSTWDANKPLAWRR+YGWTAFCGPVGPRGQA+
Sbjct: 76  ESASNVRATYHFYNPEQNGWDLNAVRAYCSTWDANKPLAWRRQYGWTAFCGPVGPRGQAS 135

Query: 81  CGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNC 140
           CG+CLRVTN GTGAQAT+RIVDQCSNGGLDLD GVFR+LDTDG+GNAQGHL+VNYQFVNC
Sbjct: 136 CGRCLRVTNTGTGAQATMRIVDQCSNGGLDLDAGVFRQLDTDGRGNAQGHLIVNYQFVNC 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388895491|gb|AFK82275.1| PR-4 protein [Chimonanthus praecox]

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/142 (74%), Positives = 121/142 (85%)

Query: 1   MGKLSLCLLLFLCSLAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAW 60
           MG L + ++  LC  A A AQSASNVRATYH+YNP++IGWD N A  +C+TWDANKPLAW
Sbjct: 1   MGNLGVSMVFLLCLAAYAEAQSASNVRATYHIYNPQQIGWDYNTASVFCATWDANKPLAW 60

Query: 61  RRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLD 120
           R KYGWTAFCG VGPRGQA+CGKCLRVTN GTG+QATVRIVDQCSNGGLDL+ GVFR+LD
Sbjct: 61  RSKYGWTAFCGLVGPRGQASCGKCLRVTNTGTGSQATVRIVDQCSNGGLDLEEGVFRQLD 120

Query: 121 TDGKGNAQGHLMVNYQFVNCGD 142
           T+G G  QGHL+VNY FV+CGD
Sbjct: 121 TNGAGIQQGHLIVNYDFVDCGD 142

Source: Chimonanthus praecox

Species: Chimonanthus praecox

Genus: Chimonanthus

Family: Calycanthaceae

Order: Laurales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123432|ref|XP_002319077.1| predicted protein [Populus trichocarpa] gi|118487978|gb|ABK95810.1| unknown [Populus trichocarpa] gi|222857453|gb|EEE95000.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/118 (88%), Positives = 111/118 (94%)

Query: 25  NVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKC 84
           NVRATYH YNP++ GWDLNA  AYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQA+CGKC
Sbjct: 79  NVRATYHYYNPDQNGWDLNAVSAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQASCGKC 138

Query: 85  LRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD 142
           LRVTN GTGAQ TVRIVDQCSNGGLDLD GVFR++DTDG+GNAQGHL+VNYQFVNCGD
Sbjct: 139 LRVTNTGTGAQVTVRIVDQCSNGGLDLDAGVFRQIDTDGRGNAQGHLIVNYQFVNCGD 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|362097039|gb|AEW12795.1| pathogenesis-related protein 4 [Vitis pseudoreticulata]

 Score =  224 bits (572), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 110/143 (76%), Positives = 118/143 (82%), Gaps = 1/143 (0%)

Query: 1   MGKLSLCLLLFLCSL-AIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLA 59
           M +  +C ++ L SL A AAAQSASNVRATYH YNP + GWDLNA  AYCSTWDA+KPLA
Sbjct: 1   MERRGICKVVVLLSLVACAAAQSASNVRATYHYYNPAQNGWDLNAVSAYCSTWDASKPLA 60

Query: 60  WRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKL 119
           WR KYGWTAFCGP GP GQAACGKCL VTN  TG QATVRIVDQCSNGGLDLD GVF +L
Sbjct: 61  WRSKYGWTAFCGPSGPTGQAACGKCLSVTNTATGTQATVRIVDQCSNGGLDLDSGVFNQL 120

Query: 120 DTDGKGNAQGHLMVNYQFVNCGD 142
           DT+G G AQGHL VNYQFVNCGD
Sbjct: 121 DTNGAGYAQGHLKVNYQFVNCGD 143

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42557355|dbj|BAD11073.1| pathogenesis-related protein 4b [Capsicum chinense]

 Score =  224 bits (571), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 103/121 (85%), Positives = 110/121 (90%)

Query: 22  SASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAAC 81
           SA NVRATYHLYNP+ +GWDLNA  AYCSTWDANKPLAWR KYGWTAFCGPVGPRGQA+C
Sbjct: 70  SAQNVRATYHLYNPQNVGWDLNAVSAYCSTWDANKPLAWRSKYGWTAFCGPVGPRGQASC 129

Query: 82  GKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCG 141
           GKCLRVTNR T AQ TVRIVDQCSNGGLDLD+ VFR++DTDG GN QGHLMV+YQFVNCG
Sbjct: 130 GKCLRVTNRRTRAQTTVRIVDQCSNGGLDLDINVFRQIDTDGVGNQQGHLMVDYQFVNCG 189

Query: 142 D 142
           D
Sbjct: 190 D 190

Source: Capsicum chinense

Species: Capsicum chinense

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844408|emb|CAN80017.1| hypothetical protein VITISV_026189 [Vitis vinifera] gi|296087926|emb|CBI35209.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (571), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 106/141 (75%), Positives = 117/141 (82%)

Query: 2   GKLSLCLLLFLCSLAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWR 61
           GK+   + + L  +A AAAQ ASNVRATYH YNPE+ GWDLNA  AYC+TWDANK LAWR
Sbjct: 3   GKIIYMVAVLLSLVACAAAQHASNVRATYHYYNPEQHGWDLNAVSAYCATWDANKSLAWR 62

Query: 62  RKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDT 121
            KYGWTAFCGP GP GQAACGKCL+VTN GTG QATVRIVDQCSNGGLDLDV VF +LDT
Sbjct: 63  SKYGWTAFCGPAGPTGQAACGKCLKVTNTGTGTQATVRIVDQCSNGGLDLDVAVFNQLDT 122

Query: 122 DGKGNAQGHLMVNYQFVNCGD 142
           +G G  QGHL+VNYQFV+CGD
Sbjct: 123 NGVGYLQGHLIVNYQFVDCGD 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453022|ref|XP_002264720.1| PREDICTED: pathogenesis-related protein PR-4B [Vitis vinifera] gi|296087927|emb|CBI35210.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/143 (76%), Positives = 118/143 (82%), Gaps = 1/143 (0%)

Query: 1   MGKLSLCLLLFLCSL-AIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLA 59
           M +  +C ++ L SL A AAAQSASNVRATYH YNP + GWDLNA  AYCSTWDA+KPLA
Sbjct: 1   MERRGICKVVVLLSLVACAAAQSASNVRATYHYYNPAQNGWDLNAVSAYCSTWDASKPLA 60

Query: 60  WRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKL 119
           WR KYGWTAFCGP GP GQAACGKCL VTN  TG QATVRIVDQCSNGGLDLD GVF +L
Sbjct: 61  WRSKYGWTAFCGPSGPTGQAACGKCLSVTNTATGTQATVRIVDQCSNGGLDLDSGVFNQL 120

Query: 120 DTDGKGNAQGHLMVNYQFVNCGD 142
           DT+G G A+GHL VNYQFVNCGD
Sbjct: 121 DTNGAGYAKGHLTVNYQFVNCGD 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3511147|gb|AAC33732.1| PR-4 type protein [Vitis vinifera] gi|295814499|gb|ADG35965.1| pathogenesis-related protein 4 [Vitis hybrid cultivar]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/143 (75%), Positives = 119/143 (83%), Gaps = 1/143 (0%)

Query: 1   MGKLSLCLLLFLCSL-AIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLA 59
           M +  +C ++ L SL A AAAQSASNVRATYH YNPE+ GWDLNA  AYCSTWDA++PLA
Sbjct: 1   MERRGICKVVVLLSLVACAAAQSASNVRATYHYYNPEQNGWDLNAVSAYCSTWDASQPLA 60

Query: 60  WRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKL 119
           WR KYGWTAFCGP GP GQAACGKCL VTN  TG QATVRIVDQCSNGGLDLD GVF KL
Sbjct: 61  WRSKYGWTAFCGPSGPTGQAACGKCLSVTNTATGTQATVRIVDQCSNGGLDLDSGVFNKL 120

Query: 120 DTDGKGNAQGHLMVNYQFVNCGD 142
           DT+G G  QGHL+VNY+FV+CGD
Sbjct: 121 DTNGAGYNQGHLIVNYEFVDCGD 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721773|ref|NP_001235941.1| uncharacterized protein LOC100526916 precursor [Glycine max] gi|255631143|gb|ACU15937.1| unknown [Glycine max]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 119/142 (83%)

Query: 1   MGKLSLCLLLFLCSLAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAW 60
           M K+SL ++  +C LA+A+AQSA+NVRATYHLY PE+  WDL A  AYCSTWDA+K LAW
Sbjct: 1   MAKVSLFVVCVVCILALASAQSATNVRATYHLYQPEQHNWDLLAVSAYCSTWDADKSLAW 60

Query: 61  RRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLD 120
           R KYGWTAFCGP GP+GQ +CG+CLRVTN  T AQ TVRIVDQCSNGGLDLD+G F+KLD
Sbjct: 61  RSKYGWTAFCGPSGPQGQQSCGRCLRVTNTRTNAQETVRIVDQCSNGGLDLDIGPFQKLD 120

Query: 121 TDGKGNAQGHLMVNYQFVNCGD 142
           TDG G AQGHL+VNY FV+CGD
Sbjct: 121 TDGNGIAQGHLIVNYDFVDCGD 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2084918	212	PR4 "pathogenesis-related 4" [	0.859	0.575	0.737	1.5e-49
UNIPROTKB|P83343	107	P83343 "Pathogenesis-related p	0.753	1.0	0.738	1.2e-44

TAIR|locus:2084918 PR4 "pathogenesis-related 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 90/122 (73%), Positives = 101/122 (82%)

Query:    21 QSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAA 80
             +SASNVRATYH YNP +  WDL A  AYCSTWDA+KP AWR KYGWTAFCGP GPRGQA+
Sbjct:    72 ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQAS 131

Query:    81 CGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNC 140
             CGKCLRV N  T A  TVRIVDQCSNGGLDLDV +F ++DTDG G  QGHL+V+YQFV+C
Sbjct:   132 CGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDC 191

Query:   141 GD 142
             G+
Sbjct:   192 GN 193

GO:0005576 "extracellular region" evidence=ISM

GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEA;RCA

GO:0050832 "defense response to fungus" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0080027 "response to herbivore" evidence=IEP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0004540 "ribonuclease activity" evidence=IDA

GO:0004568 "chitinase activity" evidence=IDA

GO:0008061 "chitin binding" evidence=ISS

GO:0009615 "response to virus" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

UNIPROTKB|P83343 P83343 "Pathogenesis-related protein PR-4" [Prunus persica (taxid:3760)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 79/107 (73%), Positives = 92/107 (85%)

Query:    36 ERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQ 95
             + I WDL  A  +C+TWDA+KPL+WR KYGWTAFCGPVGP GQ +CGKCL VTN GTGA+
Sbjct:     1 QNINWDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAK 60

Query:    96 ATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD 142
              TVRIVDQCSNGGLDLDV VF ++DT+G+GNAQGHL+VNY FV+CGD
Sbjct:    61 VTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.451    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142       130   0.00091  102 3  11 22  0.39    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  154 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.52u 0.12s 11.64t   Elapsed:  00:00:00
  Total cpu time:  11.52u 0.12s 11.64t   Elapsed:  00:00:00
  Start:  Sat May 11 03:33:25 2013   End:  Sat May 11 03:33:25 2013

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O64392	WHW1_WHEAT	No assigned EC number	0.6942	0.8309	0.8082	N/A	no
P29063	PR4B_TOBAC	No assigned EC number	0.7357	0.9859	0.9523	N/A	no
P29062	PR4A_TOBAC	No assigned EC number	0.7285	0.9859	0.9523	N/A	no
P43082	HEVL_ARATH	No assigned EC number	0.7377	0.8591	0.5754	yes	no
O64393	WHW2_WHEAT	No assigned EC number	0.7107	0.8309	0.7972	N/A	no
P09761	WIN1_SOLTU	No assigned EC number	0.8181	0.8521	0.605	N/A	no
P83343	PR4_PRUPE	No assigned EC number	0.7383	0.7535	1.0	N/A	no
P32045	PRP2_SOLLC	No assigned EC number	0.6956	0.9577	0.9510	N/A	no
P28814	BARW_HORVU	No assigned EC number	0.712	0.8591	0.976	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIII.1550.1 hypothetical protein (185 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam00967	119	pfam00967, Barwin, Barwin family	7e-76
TIGR01200	227	TIGR01200, GLPGLI, GLPGLI family protein	0.004

>gnl|CDD|201533 pfam00967, Barwin, Barwin family

 Score =  220 bits (563), Expect = 7e-76
 Identities = 95/119 (79%), Positives = 103/119 (86%)

Query: 22  SASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAAC 81
           SASNVRATYH YNP++  WDLNAA AYC+TWDANKPL+WR KYGWTAFCGP GPRGQ++C
Sbjct: 1   SASNVRATYHYYNPQQNNWDLNAASAYCATWDANKPLSWRSKYGWTAFCGPAGPRGQSSC 60

Query: 82  GKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNC 140
           GKCLRVTN  TGA  TVRIVDQCSNGGLDLDV VF +LDTDG G  QGHL VNYQFV+C
Sbjct: 61  GKCLRVTNTATGASVTVRIVDQCSNGGLDLDVNVFNQLDTDGAGYQQGHLNVNYQFVDC 119

Length = 119

>gnl|CDD|233309 TIGR01200, GLPGLI, GLPGLI family protein

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 3  KLSLCLLLFLCSLAIAAAQSASNVRATYHL 32
          K  L LLL L     +A Q  + +R TY L
Sbjct: 1  KKLLLLLLLLLFSFSSAQQQITQLRVTYEL 30

This protein family was first noted as a paralogous set in Porphyromonas gingivalis, but it is more widely distributed among the Bacteroidetes. The protein family is now renamed GLPGLI after its best-conserved motif. Length = 227

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PF00967	119	Barwin: Barwin family; InterPro: IPR001153 Barwin	100.0
COG0797	233	RlpA Lipoproteins [Cell envelope biogenesis, outer	99.72
PLN03024	125	Putative EG45-like domain containing protein 1; Pr	99.71
PRK10672	361	rare lipoprotein A; Provisional	99.62
TIGR00413	208	rlpA rare lipoprotein A. This is a family of proka	99.62
PF03330	78	DPBB_1: Rare lipoprotein A (RlpA)-like double-psi	99.43
PLN00050	247	expansin A; Provisional	99.34
PLN00193	256	expansin-A; Provisional	99.3
PLN03023	247	Expansin-like B1; Provisional	99.26
smart00837	87	DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b	99.24
PF07249	119	Cerato-platanin: Cerato-platanin; InterPro: IPR010	98.45
COG4305	232	Endoglucanase C-terminal domain/subunit and relate	98.39

>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds

Probab=100.00  E-value=1e-63  Score=374.53  Aligned_cols=119  Identities=76%  Similarity=1.403  Sum_probs=97.0

Q ss_pred             hcCCceeEEeeecCCCCCccccccccccccccCCCCcccccccCceeeeccCCCCCCCCCCcEEEEeeCCCCCEEEEEEe
Q 032389           22 SASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIV  101 (142)
Q Consensus        22 s~~~v~aty~~y~p~~~~w~~~~~s~ycatwd~~~~~a~~~~y~wta~c~~~~p~~~~~CGk~vrVTN~~tGksv~VrIv  101 (142)
                      ||+|||||||||+|++|||||+++|+||||||++||++||+||||||||||.||+++.+||||+||||++||++++||||
T Consensus         1 sa~nVraTYh~Y~p~~~nwdl~~~s~yCAtwda~kpl~wr~kYgWtAfCgp~g~~gq~~CGkClrVTNt~tga~~~~RIV   80 (119)
T PF00967_consen    1 SASNVRATYHYYNPAQNNWDLNAVSAYCATWDADKPLAWRSKYGWTAFCGPAGPMGQDSCGKCLRVTNTATGAQVTVRIV   80 (119)
T ss_dssp             EEEEEEEE-EESS-GGGTT-TTTT--TTHHHHTTS-CHHHHHS--EEC-STT---SGGGTT-EEEEE-TTT--EEEEEEE
T ss_pred             CccceeeeeeecCcccCCcccccceeeEeeecCCCCccccccCCeeEEecccCccCcccccceEEEEecCCCcEEEEEEE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCHHHHHhhcCCCCCccceeEEEEEEEEec
Q 032389          102 DQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNC  140 (142)
Q Consensus       102 DrC~~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~fv~C  140 (142)
                      |+|++|+|||++.+|++|+++|+|+++|||.|+|+||+|
T Consensus        81 DqCsnGGLDld~~vF~~iDtdG~G~~~Ghl~V~y~fV~C  119 (119)
T PF00967_consen   81 DQCSNGGLDLDPTVFNQIDTDGQGYAQGHLIVDYEFVDC  119 (119)
T ss_dssp             EE-SSSSEES-SSSHHHH-SSSHHHHHTEEEEEEEEE--
T ss_pred             EcCCCCCcccChhHHhhhccCCcccccceEEEEEEEEcC
Confidence            999999999999999999999999999999999999999

It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.

>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]

Probab=99.72  E-value=1.7e-17  Score=137.18  Aligned_cols=88  Identities=22%  Similarity=0.265  Sum_probs=78.5

Q ss_pred             cccccccC----CCCcccccccCceeeeccCCCCCCCCCCcEEEEeeCCCCCEEEEEEeecCC---CCCCCCCHHHHHhh
Q 032389           47 AYCSTWDA----NKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCS---NGGLDLDVGVFRKL  119 (142)
Q Consensus        47 ~ycatwd~----~~~~a~~~~y~wta~c~~~~p~~~~~CGk~vrVTN~~tGksv~VrIvDrC~---~g~LDLS~~aF~~I  119 (142)
                      ..-|+|++    +++++.++.|+..++++   +|.+.+.|+.|+|||.+||+||+|||+||+|   .+.||||.+||++|
T Consensus        84 ~G~ASwYg~~fhgr~TA~Ge~~n~~~~tA---AH~TLP~~t~v~VtNl~NgrsvvVRINDRGPf~~gRiIDlS~aAA~~l  160 (233)
T COG0797          84 VGYASWYGEKFHGRKTANGERYDMNALTA---AHKTLPLPTYVRVTNLDNGRSVVVRINDRGPFVSGRIIDLSKAAADKL  160 (233)
T ss_pred             cceeeeeccccCCccccCccccccccccc---ccccCCCCCEEEEEEccCCcEEEEEEeCCCCCCCCcEeEcCHHHHHHh
Confidence            34578988    67999999999999998   8999999999999999999999999999987   47899999999999


Q ss_pred             cCCCCCccceeEEEEEEEEecC
Q 032389          120 DTDGKGNAQGHLMVNYQFVNCG  141 (142)
Q Consensus       120 ~~~g~G~~~G~l~V~w~fv~C~  141 (142)
                      +..+    .|+.+|..+++.++
T Consensus       161 ~~~~----~G~a~V~i~~l~~~  178 (233)
T COG0797         161 GMIR----SGVAKVRIEVLGVA  178 (233)
T ss_pred             CCcc----CceEEEEEEEeccc
Confidence            9855    66778888888753

>PLN03024 Putative EG45-like domain containing protein 1; Provisional

Probab=99.71  E-value=9.1e-17  Score=121.82  Aligned_cols=57  Identities=32%  Similarity=0.566  Sum_probs=49.3

Q ss_pred             CCCCCCCcEEEEee---------CCCCCEEEEEEeecCCC---CCCCCCHHHHHhhcCCCCCccceeEEEEEE
Q 032389           76 RGQAACGKCLRVTN---------RGTGAQATVRIVDQCSN---GGLDLDVGVFRKLDTDGKGNAQGHLMVNYQ  136 (142)
Q Consensus        76 ~~~~~CGk~vrVTN---------~~tGksv~VrIvDrC~~---g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~  136 (142)
                      ++...||+|++|+.         ..+|++|+|+|+|+||.   ++||||++||++|++++    .|+++|+|+
T Consensus        56 ~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~~~----aG~v~V~y~  124 (125)
T PLN03024         56 NNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIANPV----AGIINIDYI  124 (125)
T ss_pred             CCCcccCceEEEEECCCCccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHHhcCcc----CCEEEEEEe
Confidence            35678999999983         45799999999999983   59999999999999864    689999996

>PRK10672 rare lipoprotein A; Provisional

Probab=99.62  E-value=3.9e-15  Score=129.57  Aligned_cols=85  Identities=20%  Similarity=0.187  Sum_probs=71.4

Q ss_pred             cccccccCC----CCcccccccCceeeeccCCCCCCCCCCcEEEEeeCCCCCEEEEEEeecCC---CCCCCCCHHHHHhh
Q 032389           47 AYCSTWDAN----KPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCS---NGGLDLDVGVFRKL  119 (142)
Q Consensus        47 ~ycatwd~~----~~~a~~~~y~wta~c~~~~p~~~~~CGk~vrVTN~~tGksv~VrIvDrC~---~g~LDLS~~aF~~I  119 (142)
                      ..-|+|++.    ++++.++.|...++.+   +|...+.|..|||||..|||+|+|||+||++   .+.||||++||++|
T Consensus        80 ~G~ASwYg~~f~G~~TA~Ge~~~~~~~tA---AH~tLPlps~vrVtNl~ngrsvvVrVnDRGP~~~gRiiDLS~aAA~~L  156 (361)
T PRK10672         80 AGLAAIYDAEAGSNLTASGERFDPNALTA---AHPTLPIPSYVRVTNLANGRMIVVRINDRGPYGPGRVIDLSRAAADRL  156 (361)
T ss_pred             EEEEEEeCCccCCCcCcCceeecCCcCee---eccCCCCCCEEEEEECCCCcEEEEEEeCCCCCCCCCeeEcCHHHHHHh
Confidence            345678774    5889999999999987   8999999999999999999999999999997   47999999999999


Q ss_pred             cCCCCCccceeEEEEEEEE
Q 032389          120 DTDGKGNAQGHLMVNYQFV  138 (142)
Q Consensus       120 ~~~g~G~~~G~l~V~w~fv  138 (142)
                      +..+    .+++.|+.--|
T Consensus       157 g~~~----~~~V~ve~i~v  171 (361)
T PRK10672        157 NTSN----NTKVRIDPIIV  171 (361)
T ss_pred             CCCC----CceEEEEEEee
Confidence            9754    34555554433

>TIGR00413 rlpA rare lipoprotein A

Probab=99.62  E-value=1.7e-15  Score=123.53  Aligned_cols=79  Identities=19%  Similarity=0.214  Sum_probs=71.0

Q ss_pred             CCCcccccccCceeeeccCCCCCCCCCCcEEEEeeCCCCCEEEEEEeecCC---CCCCCCCHHHHHhhcCCCCCccceeE
Q 032389           55 NKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCS---NGGLDLDVGVFRKLDTDGKGNAQGHL  131 (142)
Q Consensus        55 ~~~~a~~~~y~wta~c~~~~p~~~~~CGk~vrVTN~~tGksv~VrIvDrC~---~g~LDLS~~aF~~I~~~g~G~~~G~l  131 (142)
                      +++++.++.|...++.+   +|.+.++|+.|+|||..||++|+|||+||||   .+.||||++|+++|+..+    .|..
T Consensus        12 G~~TAnGe~y~~~~~tA---AHktLPlgT~V~VtNl~ngrsviVrVnDRGPf~~gRiIDLS~aAA~~Lg~~~----~G~a   84 (208)
T TIGR00413        12 GRKTANGEVYNMKALTA---AHKTLPFNTYVKVTNLHNNRSVIVRINDRGPFSDDRIIDLSHAAAREIGLIS----RGVG   84 (208)
T ss_pred             CCcCCCCeecCCCcccc---ccccCCCCCEEEEEECCCCCEEEEEEeCCCCCCCCCEEECCHHHHHHcCCCc----CceE
Confidence            57899999999999987   8999999999999999999999999999997   478999999999999865    5677


Q ss_pred             EEEEEEEec
Q 032389          132 MVNYQFVNC  140 (142)
Q Consensus       132 ~V~w~fv~C  140 (142)
                      +|..+.+..
T Consensus        85 ~V~vevl~~   93 (208)
T TIGR00413        85 QVRIEVLHV   93 (208)
T ss_pred             EEEEEEEec
Confidence            788777764

This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.

>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures

Probab=99.43  E-value=1.6e-13  Score=94.10  Aligned_cols=53  Identities=34%  Similarity=0.634  Sum_probs=43.1

Q ss_pred             CCCCcEEEEeeC---CC-----C--CEEEEEEeecCC---CCCCCCCHHHHHhhcCCCCCccceeEEEEE
Q 032389           79 AACGKCLRVTNR---GT-----G--AQATVRIVDQCS---NGGLDLDVGVFRKLDTDGKGNAQGHLMVNY  135 (142)
Q Consensus        79 ~~CGk~vrVTN~---~t-----G--ksv~VrIvDrC~---~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w  135 (142)
                      ..||+|++++..   ..     .  |+|+|+|+|+||   .++||||+++|++|+++    ..|+++|+|
T Consensus        13 ~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~~----~~G~i~V~w   78 (78)
T PF03330_consen   13 TACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALADP----DAGVIPVEW   78 (78)
T ss_dssp             TTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBST----TCSSEEEEE
T ss_pred             CcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCCC----CceEEEEEC
Confidence            779999998871   11     1  999999999987   58999999999999986    478999998

They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.

>PLN00050 expansin A; Provisional

Probab=99.34  E-value=6.9e-12  Score=104.55  Aligned_cols=127  Identities=20%  Similarity=0.338  Sum_probs=81.8

Q ss_pred             CcchhhHHHHHHHHHHHHH--hhhcCCceeEEeeecCCCCCccccccccccccccCCCCcccccccCceeeec-cCCCCC
Q 032389            1 MGKLSLCLLLFLCSLAIAA--AQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCG-PVGPRG   77 (142)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~--a~s~~~v~aty~~y~p~~~~w~~~~~s~ycatwd~~~~~a~~~~y~wta~c~-~~~p~~   77 (142)
                      ||-+...++++|++|-..+  +..=..-+|||  |--...   ..+.+..|.=    ..+. ...|+...-+. +.--++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~--Yg~~dg---~gt~gGACGY----g~l~-~~~~g~~~AAls~~lf~~   70 (247)
T PLN00050          1 MECLGYTIVALLSILKIVEGYGSGWTGAHATF--YGGGDA---SGTMGGACGY----GNLY-SQGYGTNTAALSTALFNN   70 (247)
T ss_pred             CcchhhhHHHHhhhheeccccCCCccccEEEE--cCCCCC---CCCCCcccCC----CCcc-ccCCCceeeeccHhHccC
Confidence            6666666777888773332  22333567887  432211   1222344521    1111 12455432221 222467


Q ss_pred             CCCCCcEEEEeeCCC-----CCEEEEEEeecCCC----------------CCCCCCHHHHHhhcCCCCCccceeEEEEEE
Q 032389           78 QAACGKCLRVTNRGT-----GAQATVRIVDQCSN----------------GGLDLDVGVFRKLDTDGKGNAQGHLMVNYQ  136 (142)
Q Consensus        78 ~~~CGk~vrVTN~~t-----Gksv~VrIvDrC~~----------------g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~  136 (142)
                      ...||.|.+|+....     +.+|+|+|+|+||.                .++|||+.||.+|+.    ...|+|+|+|+
T Consensus        71 G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~----~~aGii~V~yR  146 (247)
T PLN00050         71 GLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ----YKAGIVPVQYR  146 (247)
T ss_pred             CccccceEEEEcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh----hcCCeeeeEEE
Confidence            789999999997532     24899999999973                689999999999997    45789999999


Q ss_pred             EEecC
Q 032389          137 FVNCG  141 (142)
Q Consensus       137 fv~C~  141 (142)
                      -|+|.
T Consensus       147 RVpC~  151 (247)
T PLN00050        147 RVACR  151 (247)
T ss_pred             EecCc
Confidence            99995

>PLN00193 expansin-A; Provisional

Probab=99.30  E-value=3.7e-11  Score=100.71  Aligned_cols=63  Identities=25%  Similarity=0.466  Sum_probs=54.0

Q ss_pred             CCCCCCCCcEEEEeeCC--------CCCEEEEEEeecCCC----------------CCCCCCHHHHHhhcCCCCCcccee
Q 032389           75 PRGQAACGKCLRVTNRG--------TGAQATVRIVDQCSN----------------GGLDLDVGVFRKLDTDGKGNAQGH  130 (142)
Q Consensus        75 p~~~~~CGk~vrVTN~~--------tGksv~VrIvDrC~~----------------g~LDLS~~aF~~I~~~g~G~~~G~  130 (142)
                      -++...||.|.+|+...        .|++|+|+|+|+||.                .++|||+.||.+|+.    ...|+
T Consensus        73 f~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~----~~~Gi  148 (256)
T PLN00193         73 FNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI----YRGGI  148 (256)
T ss_pred             ccCCccccCeEEEECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh----hcCCe
Confidence            45678999999998731        467999999999973                479999999999996    45789


Q ss_pred             EEEEEEEEecC
Q 032389          131 LMVNYQFVNCG  141 (142)
Q Consensus       131 l~V~w~fv~C~  141 (142)
                      |+|+|+-|+|.
T Consensus       149 v~V~yrRVpC~  159 (256)
T PLN00193        149 VPVLFQRVPCK  159 (256)
T ss_pred             EeEEEEEeccc
Confidence            99999999995

>PLN03023 Expansin-like B1; Provisional

Probab=99.26  E-value=8.1e-11  Score=98.22  Aligned_cols=109  Identities=20%  Similarity=0.299  Sum_probs=74.3

Q ss_pred             cCCceeEEeeecCCCCCccccccccccccccCCCCcccccccCceeeeccCCCCCCCCCCcEEEEeeCC----CCCEEEE
Q 032389           23 ASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRG----TGAQATV   98 (142)
Q Consensus        23 ~~~v~aty~~y~p~~~~w~~~~~s~ycatwd~~~~~a~~~~y~wta~c~~~~p~~~~~CGk~vrVTN~~----tGksv~V   98 (142)
                      =..-+|||  |-+...   .++.+..|.==+-..     +-||...-..+.--++...||.|.+|+...    .+++|+|
T Consensus        25 W~~a~AT~--Yg~~~g---~gt~gGACGYg~~~~-----~~~g~~~aa~s~Lf~~G~~CGaCy~irC~~~~~C~~~~v~V   94 (247)
T PLN03023         25 FTYSRATY--YGSPDC---LGTPTGACGFGEYGR-----TVNGGNVAGVSRLYRNGTGCGACYQVRCKAPNLCSDDGVNV   94 (247)
T ss_pred             cccceEEE--eCCCCC---CCCCCccccCCcccc-----CCCcceeeeehhhhcCCchhcccEEeecCCCCccCCCCeEE
Confidence            34566777  665522   223344553222111     224544333333346778999999999754    5678999


Q ss_pred             EEeecCC--CCCCCCCHHHHHhhcCCCCC---ccceeEEEEEEEEecC
Q 032389           99 RIVDQCS--NGGLDLDVGVFRKLDTDGKG---NAQGHLMVNYQFVNCG  141 (142)
Q Consensus        99 rIvDrC~--~g~LDLS~~aF~~I~~~g~G---~~~G~l~V~w~fv~C~  141 (142)
                      +|+|.|+  ..++|||..||.+|+.+|+.   +..|+|+|+|+=|+|.
T Consensus        95 ~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~  142 (247)
T PLN03023         95 VVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCR  142 (247)
T ss_pred             EEEeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecc
Confidence            9999985  47999999999999987542   3469999999999994

>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Probab=99.24  E-value=1.5e-11  Score=87.81  Aligned_cols=56  Identities=27%  Similarity=0.499  Sum_probs=46.7

Q ss_pred             CCCCCCCcEEEEeeC------CCCCEEEEEEeecCCC----------------CCCCCCHHHHHhhcCCCCCccceeEEE
Q 032389           76 RGQAACGKCLRVTNR------GTGAQATVRIVDQCSN----------------GGLDLDVGVFRKLDTDGKGNAQGHLMV  133 (142)
Q Consensus        76 ~~~~~CGk~vrVTN~------~tGksv~VrIvDrC~~----------------g~LDLS~~aF~~I~~~g~G~~~G~l~V  133 (142)
                      ++...||.|++|+..      .+|++|+|+|+|+|+.                ++||||+.||.+|+..    ..|+|+|
T Consensus        10 ~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~----~~Gvi~v   85 (87)
T smart00837       10 NNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQY----KAGIVPV   85 (87)
T ss_pred             cCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhh----cCCEEee
Confidence            466889999999853      2456999999999863                5899999999999984    5789999


Q ss_pred             EE
Q 032389          134 NY  135 (142)
Q Consensus       134 ~w  135 (142)
                      +|
T Consensus        86 ~y   87 (87)
T smart00837       86 KY   87 (87)
T ss_pred             EC
Confidence            86

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.

>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family

Probab=98.45  E-value=4.7e-07  Score=68.66  Aligned_cols=60  Identities=23%  Similarity=0.567  Sum_probs=46.9

Q ss_pred             CCCCCCCcEEEEeeCCCCCEEEEEEeecCCCCCCCCCHHHHHhhcCCCCCccceeEEEEEEEEe
Q 032389           76 RGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVN  139 (142)
Q Consensus        76 ~~~~~CGk~vrVTN~~tGksv~VrIvDrC~~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~fv~  139 (142)
                      .+.+.||+|.++|.  +|+++.+..+|. +.++++++++||++|. .|+....|+|.++|+.|+
T Consensus        54 WnS~~CGtC~~lty--~g~si~vlaID~-a~~gfnis~~A~n~LT-~g~a~~lG~V~a~~~qV~  113 (119)
T PF07249_consen   54 WNSPNCGTCWKLTY--NGRSIYVLAIDH-AGGGFNISLDAMNDLT-NGQAVELGRVDATYTQVD  113 (119)
T ss_dssp             TT-TTTT-EEEEEE--TTEEEEEEEEEE--SSSEEE-HHHHHHHH-TS-CCCC-EEE-EEEEE-
T ss_pred             CCCCCCCCeEEEEE--CCeEEEEEEEec-CCCcccchHHHHHHhc-CCcccceeEEEEEEEEcC
Confidence            45689999999997  799999999999 4467999999999997 467788999999999986

It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.

>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]

Probab=98.39  E-value=5.2e-07  Score=73.63  Aligned_cols=58  Identities=31%  Similarity=0.477  Sum_probs=48.8

Q ss_pred             CCCCCCcEEEEeeCCCCCEEEEEEeecCC---CCCCCCCHHHHHhhcCCCCCccceeEEEEEEEEec
Q 032389           77 GQAACGKCLRVTNRGTGAQATVRIVDQCS---NGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNC  140 (142)
Q Consensus        77 ~~~~CGk~vrVTN~~tGksv~VrIvDrC~---~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~fv~C  140 (142)
                      .-+.-|..+||..++.  +.+|-|.|+-|   .|.|||||.||.+|++    +.+|+|+|.|..|+-
T Consensus        72 pAAmAGaYLrVqGPKG--~TTVYVTDlYPegasGaLDLSpNAFakIGn----m~qGrIpvqWrvv~a  132 (232)
T COG4305          72 PAAMAGAYLRVQGPKG--KTTVYVTDLYPEGASGALDLSPNAFAKIGN----MKQGRIPVQWRVVKA  132 (232)
T ss_pred             hhhhccceEEEECCCC--ceEEEEecccccccccccccChHHHhhhcc----hhcCccceeEEEecc
Confidence            3466789999987643  67889999965   5899999999999997    678999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
1bw3_A	125	Three-Dimensional Structure In Solution Of Barwin,		9e-46

>pdb|1BW3|A Chain A, Three-Dimensional Structure In Solution Of Barwin, A Protein From Barley Seed Length = 125

Iteration: 1
 Score =  178 bits (451), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 88/125 (70%), Positives = 99/125 (79%), Gaps = 3/125 (2%)
Query: 21  QSASNVRATYHLYNPERIGWDLNA--ARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQ 78
           + A++VRATYH Y P +  WDL A    AYC+TWDA+KPL+WR KYGWTAFCGP GPRGQ
Sbjct: 1   EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQ 60
Query: 79  AACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVG-VFRKLDTDGKGNAQGHLMVNYQF 137
           AACGKCLRVTN  TGAQ T RIVDQC+NGGLDLD   VF K+DT+G G  QGHL VNYQF
Sbjct: 61  AACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQF 120
Query: 138 VNCGD 142
           V+C D
Sbjct: 121 VDCRD 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1bw3_A	125	Barwin, basic barley SEED protein; lectin; NMR {Ho	1e-59
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	3e-09

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Length = 125

 Score =  179 bits (455), Expect = 1e-59
 Identities = 88/125 (70%), Positives = 99/125 (79%), Gaps = 3/125 (2%)

Query: 21  QSASNVRATYHLYNPERIGWDLN--AARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQ 78
           + A++VRATYH Y P +  WDL   A  AYC+TWDA+KPL+WR KYGWTAFCGP GPRGQ
Sbjct: 1   EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQ 60

Query: 79  AACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDV-GVFRKLDTDGKGNAQGHLMVNYQF 137
           AACGKCLRVTN  TGAQ T RIVDQC+NGGLDLD   VF K+DT+G G  QGHL VNYQF
Sbjct: 61  AACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQF 120

Query: 138 VNCGD 142
           V+C D
Sbjct: 121 VDCRD 125

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208

 Score = 52.2 bits (125), Expect = 3e-09
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 74  GPRGQAACGKCLRVTNRGTGAQATVRIVDQC---SNGGLDLDVGVFRKLDTDGKGNAQGH 130
           G    A  G  L V   G   + TV + D     + G LDL    FRK+         G 
Sbjct: 45  GGVKAALAGSYLEVE--GPKGKTTVYVTDLYPEGARGALDLSPNAFRKIG----NMKDGK 98

Query: 131 LMVNYQFVNCG 141
           + + ++ V   
Sbjct: 99  INIKWRVVKAP 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
1bw3_A	125	Barwin, basic barley SEED protein; lectin; NMR {Ho	100.0
4avr_A	95	PA4485; unknown function, GRAM-negative bacteria,	99.85
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	99.57
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	99.45
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	99.38
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	98.61
3sul_A	122	Cerato-platanin-like protein; double PSI beta barr	98.31
3sum_A	136	Cerato-platanin-like protein; double PSI beta barr	98.23
3m3g_A	120	EPL1 protein; fungal, plant defense, fungus, polys	98.21
2kqa_A	129	Cerato-platanin; elicitor, secreted, toxin; NMR {C	98.15
3suk_A	125	Cerato-platanin-like protein; double PSI beta barr	98.09
3suj_A	127	Cerato-platanin 1; double PSI beta barrel, unknown	98.04

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A

Probab=100.00  E-value=5.8e-57  Score=340.66  Aligned_cols=122  Identities=72%  Similarity=1.326  Sum_probs=119.5

Q ss_pred             hhcCCceeEEeeecCCCCCccccc--cccccccccCCCCcccccccCceeeeccCCCCCCCCCCcEEEEeeCCCCCEEEE
Q 032389           21 QSASNVRATYHLYNPERIGWDLNA--ARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATV   98 (142)
Q Consensus        21 ~s~~~v~aty~~y~p~~~~w~~~~--~s~ycatwd~~~~~a~~~~y~wta~c~~~~p~~~~~CGk~vrVTN~~tGksv~V   98 (142)
                      |+|+|||||||||+|+++||||++  +|+||+|||++++++||++|+|+|||+|+||+++..||+||+|||+.||+||+|
T Consensus         1 ~~~~~~~~ty~~y~~~~~~~~~~~~~~s~~C~t~da~~~~~~~~~y~wtA~~g~~gp~~g~~CG~cv~Vtn~~nGksV~V   80 (125)
T 1bw3_A            1 EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITA   80 (125)
T ss_dssp             CEEEEEEEECCCSSCGGGTTCTTSTTTCCTTHHHHTTSCHHHHHHSCCEESCSTTCCCSGGGTTCEEEEEETTTTEEEEE
T ss_pred             CCccceEEEEEEecCCCcCcccccceeeEeeecccCCCceeEecCCCceEeccCCCCCCCcccCCEEEeEeCCCCCEEEE
Confidence            689999999999999999999999  999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCCCCC-HHHHHhhcCCCCCccceeEEEEEEEEecCC
Q 032389           99 RIVDQCSNGGLDLD-VGVFRKLDTDGKGNAQGHLMVNYQFVNCGD  142 (142)
Q Consensus        99 rIvDrC~~g~LDLS-~~aF~~I~~~g~G~~~G~l~V~w~fv~C~~  142 (142)
                      ||||+||.++|||| ++||++|+++|+|+..|+|+|+|+||+|+|
T Consensus        81 ~VvD~CP~ggLDLS~~~AF~~Ia~~g~G~~~G~i~V~w~~V~C~~  125 (125)
T 1bw3_A           81 RIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD  125 (125)
T ss_dssp             EEEECCSSSSCCSCSSSSHHHHCSSCHHHHHSEEEEEEEEECCCC
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHhccCCcccCcEEEEEEEEEeCCC
Confidence            99999999999999 999999999888899999999999999997

>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}

Probab=99.85  E-value=7.1e-22  Score=143.01  Aligned_cols=78  Identities=21%  Similarity=0.171  Sum_probs=70.7

Q ss_pred             CCCcccccccCceeeeccCCCCCCCCCCcEEEEeeCCCCCEEEEEEeecCC---CCCCCCCHHHHHhhcCCCCCccceeE
Q 032389           55 NKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCS---NGGLDLDVGVFRKLDTDGKGNAQGHL  131 (142)
Q Consensus        55 ~~~~a~~~~y~wta~c~~~~p~~~~~CGk~vrVTN~~tGksv~VrIvDrC~---~g~LDLS~~aF~~I~~~g~G~~~G~l  131 (142)
                      ++++|.++.|...++.+   +|++.+||+.|||||+.|||||+|||+||||   .+.||||++||++|+..+    .|..
T Consensus        15 G~~TA~Ge~~~~~~~tA---AH~tlP~gt~vrVtNl~nGksVvVrVnDRGP~~~griIDLS~aAa~~Lg~~~----~G~~   87 (95)
T 4avr_A           15 GLRTASGERYNPNAMTA---AHRTLPFGARVRVTNLDNRRSVVVRINDRGPFRRGRIIDVSRKAAEGLGMIR----SGVA   87 (95)
T ss_dssp             TSBCTTSCBCCTTSCEE---ECSSSCTTCEEEEEETTTCCEEEEEEEECCCCSTTEEEEECHHHHHHHTCTT----TSCE
T ss_pred             CCCCCCccCcCCCCCEE---EcCCCCCCcEEEEEECCCCcEEEEEEccCCCCCCCCEEEeCHHHHHHhCCcC----CCEE
Confidence            47899999999999987   8999999999999999999999999999987   468999999999999854    6788


Q ss_pred             EEEEEEEe
Q 032389          132 MVNYQFVN  139 (142)
Q Consensus       132 ~V~w~fv~  139 (142)
                      +|+||++|
T Consensus        88 ~V~ve~~~   95 (95)
T 4avr_A           88 PVRIESLD   95 (95)
T ss_dssp             EEEEEEC-
T ss_pred             EEEEEEeC
Confidence            99999875

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A

Probab=99.57  E-value=2.5e-15  Score=119.89  Aligned_cols=58  Identities=28%  Similarity=0.478  Sum_probs=52.0

Q ss_pred             CCCCCcEEEEeeCCCCCEEEEEEeecCC---CCCCCCCHHHHHhhcCCCCCccceeEEEEEEEEecC
Q 032389           78 QAACGKCLRVTNRGTGAQATVRIVDQCS---NGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCG  141 (142)
Q Consensus        78 ~~~CGk~vrVTN~~tGksv~VrIvDrC~---~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~fv~C~  141 (142)
                      .+.||+|++||+.  +++|+|+|+|+|+   .++||||+.||++|+.    ...|+++|+|++|+|+
T Consensus        49 ~~~CG~c~~v~~~--~gsv~V~v~D~CP~C~~~~~DLS~~aF~~la~----~~~G~i~v~~~~V~C~  109 (208)
T 3d30_A           49 AALAGSYLEVEGP--KGKTTVYVTDLYPEGARGALDLSPNAFRKIGN----MKDGKINIKWRVVKAP  109 (208)
T ss_dssp             TTTTTCEEEEEET--TEEEEEEEEEECTTCCTTCEEECHHHHHHHSC----GGGSSEEEEEEEECCC
T ss_pred             ccccCCEEEEEeC--CCcEEEEEEECCCCCCCCeEECCHHHHHHhcc----cCCCEEEEEEEEeCCC
Confidence            4789999999985  5599999999985   5899999999999987    4689999999999996

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}

Probab=99.45  E-value=5.4e-14  Score=115.08  Aligned_cols=66  Identities=27%  Similarity=0.450  Sum_probs=55.7

Q ss_pred             CCCCCCCcEEEEeeCC----CCCEEEEEEeecCC----CCCCCCCHHHHHhhcCCCCC---ccceeEEEEEEEEecC
Q 032389           76 RGQAACGKCLRVTNRG----TGAQATVRIVDQCS----NGGLDLDVGVFRKLDTDGKG---NAQGHLMVNYQFVNCG  141 (142)
Q Consensus        76 ~~~~~CGk~vrVTN~~----tGksv~VrIvDrC~----~g~LDLS~~aF~~I~~~g~G---~~~G~l~V~w~fv~C~  141 (142)
                      ++...||+|++|++..    .+++|+|+|+|+|+    .++||||+.||.+|+.+|++   +..|+|+|+|++|+|.
T Consensus        65 ~~G~~CG~Cy~V~c~~~~~C~~~sv~V~VtD~C~C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~  141 (245)
T 2hcz_X           65 KDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCK  141 (245)
T ss_dssp             GGGTSTTCEEEEECCSSSSBCSSCEEEEEEEECCCTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCC
T ss_pred             CCchhcCCeEEEEeCCCCccCCCCEEEEEEeccCCCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecC
Confidence            4568899999999874    47899999999974    37999999999999985322   4579999999999995

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3

Probab=99.38  E-value=1.6e-13  Score=112.15  Aligned_cols=66  Identities=23%  Similarity=0.500  Sum_probs=55.6

Q ss_pred             CCCCCCCcEEEEeeCCC----CCEEEEEEeecCC----CCCCCCCHHHHHhhcCCCCC---ccceeEEEEEEEEecC
Q 032389           76 RGQAACGKCLRVTNRGT----GAQATVRIVDQCS----NGGLDLDVGVFRKLDTDGKG---NAQGHLMVNYQFVNCG  141 (142)
Q Consensus        76 ~~~~~CGk~vrVTN~~t----Gksv~VrIvDrC~----~g~LDLS~~aF~~I~~~g~G---~~~G~l~V~w~fv~C~  141 (142)
                      ++...||+|++|++...    +++|+|+|+|+|.    ..+||||+.||.+|+.+|+.   +..|+|+|+|++|+|.
T Consensus        65 ~~G~~CG~CyeV~c~~~~~C~~~~v~V~VtD~C~C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~  141 (241)
T 1n10_A           65 KSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCK  141 (241)
T ss_dssp             GGGTTSSCEEEEEECSSTTBCSCCEEEEEEEECSSCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCC
T ss_pred             cCcccCCCeEEEEeCCCCccCCCCEEEEEeEecCCCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeCC
Confidence            45688999999999753    7899999999973    37899999999999975321   4579999999999995

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1

Probab=98.61  E-value=8.5e-09  Score=81.85  Aligned_cols=58  Identities=28%  Similarity=0.562  Sum_probs=48.7

Q ss_pred             CCCCcEEEEeeC-----------CCCCEEEEEEeecCCC-----------------------CCCCCCHHHHHhhcCCCC
Q 032389           79 AACGKCLRVTNR-----------GTGAQATVRIVDQCSN-----------------------GGLDLDVGVFRKLDTDGK  124 (142)
Q Consensus        79 ~~CGk~vrVTN~-----------~tGksv~VrIvDrC~~-----------------------g~LDLS~~aF~~I~~~g~  124 (142)
                      ..||+|++|+..           ..|+||+|+|.|.||+                       -++||++.+ .+|+.   
T Consensus        67 ~~CG~Cyel~c~~~~c~~cg~~~~~g~SI~VtaTN~CPpn~~nggWCn~pp~~~~~n~~G~~~HFDLs~pa-~~Ia~---  142 (181)
T 1wc2_A           67 QHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLENGR-SQVTG---  142 (181)
T ss_dssp             TTTTCEEEEEEEEEECTTSCCCCCTTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEECTT-STTGG---
T ss_pred             ccCCCcEEEEcCCCCcccccccCCCCCeEEEEEecCCCCCCCCCCccCCCcccCcccccCccccccccchH-HHhhh---
Confidence            799999999853           2478999999999982                       279999888 88875   


Q ss_pred             CccceeEEEEEEEEecC
Q 032389          125 GNAQGHLMVNYQFVNCG  141 (142)
Q Consensus       125 G~~~G~l~V~w~fv~C~  141 (142)
                       +..|+++|+|+.|+|.
T Consensus       143 -~~~GivpV~yrrV~C~  158 (181)
T 1wc2_A          143 -MGWNNPETTWEVVNCD  158 (181)
T ss_dssp             -GTCSSEEEEEEEECHH
T ss_pred             -hcCCCceeEEEEEeCC
Confidence             5579999999999994

>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa}

Probab=98.31  E-value=1e-06  Score=66.03  Aligned_cols=62  Identities=29%  Similarity=0.527  Sum_probs=54.0

Q ss_pred             CCCCCCCcEEEEeeCCCCCEEEEEEeecCCCCCCCCCHHHHHhhcCCCCCccceeEEEEEEEEe
Q 032389           76 RGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVN  139 (142)
Q Consensus        76 ~~~~~CGk~vrVTN~~tGksv~VrIvDrC~~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~fv~  139 (142)
                      .+.+.||+|.++|...+|++|.+..+|.=.. ++||+.+||+.|. .|+....|+|.++|+.|+
T Consensus        55 wnS~~CGtC~~lty~~~g~si~vlaID~a~~-Gfnis~~Amn~LT-~G~a~~lG~V~a~~~qV~  116 (122)
T 3sul_A           55 WNSESCGTCYQITWSGTGKTIHVVGVDVAGN-GFNVGQRAMDDLT-NGQAVALGNIDVTATLVD  116 (122)
T ss_dssp             TTCTTTTCEEEEEETTTTEEEEEEEEEECSS-SEEECHHHHHHHH-TSCHHHHSEEEEEEEEEC
T ss_pred             CCCCCCCceEEEEEcCCCcEEEEEEEecCCC-ceeehHHHHHHhc-CCcceecceEeEEEEEcC
Confidence            4569999999999987799999999998644 6999999999997 455566699999999997

>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}

Probab=98.23  E-value=1.9e-06  Score=65.79  Aligned_cols=62  Identities=24%  Similarity=0.431  Sum_probs=53.7

Q ss_pred             CCCCCCCCcEEEEeeCCCCCEEEEEEeecCCCCC-CCCCHHHHHhhcCCCC----CccceeEEE-EEEEEe
Q 032389           75 PRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGG-LDLDVGVFRKLDTDGK----GNAQGHLMV-NYQFVN  139 (142)
Q Consensus        75 p~~~~~CGk~vrVTN~~tGksv~VrIvDrC~~g~-LDLS~~aF~~I~~~g~----G~~~G~l~V-~w~fv~  139 (142)
                      +.++..||+|.++|.  +|++|.|..+|+=..|. +|+|.+|++.|.. |+    +...|+|.+ +|+.|+
T Consensus        54 ~wns~~CGtCwkLtY--~G~sI~vlaID~a~~g~~FnIs~~Amn~LT~-G~~a~~a~elG~Vda~~~~qVd  121 (136)
T 3sum_A           54 PEAQTECGSCWKLRY--KGNHAFVTVVDRVEEANLFVGGTDLVKNLTT-FNGAPEGYDWGTAQLFSAYQVD  121 (136)
T ss_dssp             CBTTBCTTCEEEEEE--TTEEEEEEEEECCCSTTEEEECHHHHHHHTC-BTTBCHHHHHSEEECSEEEEEC
T ss_pred             ccCCCCCCceEEEEE--CCeEEEEEEEecCCCcceEeehHHHHHHHhC-CCccccceecceeeeeEEEEcC
Confidence            478899999999996  59999999999976554 9999999999974 45    456799999 999997

>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}

Probab=98.21  E-value=1.7e-06  Score=64.68  Aligned_cols=60  Identities=22%  Similarity=0.461  Sum_probs=52.5

Q ss_pred             CCCCCCCcEEEEeeCCCCCEEEEEEeecCCCCCCCCCHHHHHhhcCCCCCccceeEEEEEEEEe
Q 032389           76 RGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVN  139 (142)
Q Consensus        76 ~~~~~CGk~vrVTN~~tGksv~VrIvDrC~~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~fv~  139 (142)
                      .+++.||+|.++|.  +|++|.|..+|.=.. +++++++||+.|. .|+....|+|.++|+.|+
T Consensus        55 wns~~CGtC~~lty--~g~si~vlaID~a~~-Gfnis~~A~n~LT-~G~a~~lG~V~a~~~~V~  114 (120)
T 3m3g_A           55 WNSASCGTCWKLQY--SGHTIYVLAVDHAAS-GFNIALDAMNALT-GGQAVQLGRVSATATQVP  114 (120)
T ss_dssp             TTCTTTTCEEEEEE--TTEEEEEEEEEECSS-SEEECHHHHHHHH-TSCHHHHCEEECEEEEEC
T ss_pred             CCCCCCCceEEEEE--CCeEEEEEEEecCCC-ceeecHHHHHHhh-CCcceeeeeEeEEEEEcC
Confidence            57899999999997  699999999998644 6999999999998 465556699999999986

>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}

Probab=98.15  E-value=1.7e-06  Score=65.55  Aligned_cols=59  Identities=32%  Similarity=0.566  Sum_probs=53.0

Q ss_pred             CCCCCCCcEEEEeeCCCCCEEEEEEeecCCCCCCCCCHHHHHhhcCCCCCccceeE-EEEEEEEe
Q 032389           76 RGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHL-MVNYQFVN  139 (142)
Q Consensus        76 ~~~~~CGk~vrVTN~~tGksv~VrIvDrC~~g~LDLS~~aF~~I~~~g~G~~~G~l-~V~w~fv~  139 (142)
                      .+.+.||+|.++|.+ +|++|.+..+|.=+ ++++++++||++|..   |...|+| .++|+.|+
T Consensus        61 WNS~~CGtC~~lty~-ng~sI~vlaID~A~-~gFnIs~~Amn~LT~---G~~lG~V~~a~~~qV~  120 (129)
T 2kqa_A           61 WDSPSCGTCWKVTIP-NGNSIFIRGVDSGR-GGFNVNPTAFTKLVG---STEAGRVDNVNYVQVD  120 (129)
T ss_dssp             TTCTTCSCEEEEEET-TTEEEEEEEEEECS-SSEEECHHHHHHHHS---SSSSCCBCSCEEEECC
T ss_pred             CCCCCCCceEEEEEc-CCCEEEEEEEccCC-CceeehHHHHHHhcC---CcccCcEeEEEEEEcC
Confidence            568999999999987 79999999999966 579999999999986   3789999 99999986

>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=98.09  E-value=3.8e-06  Score=63.15  Aligned_cols=63  Identities=22%  Similarity=0.427  Sum_probs=52.5

Q ss_pred             CCCCCCCCcEEEEeeC--CCCCEEEEEEeecCCCCCCCCCHHHHHhhcCCCCCccceeEEEEEEEEe
Q 032389           75 PRGQAACGKCLRVTNR--GTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVN  139 (142)
Q Consensus        75 p~~~~~CGk~vrVTN~--~tGksv~VrIvDrC~~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~fv~  139 (142)
                      ..+.+.||+|.++|+.  .+.++|.+..+|.=. +++||+++||+.|.. |+....|+|.++|+.|+
T Consensus        55 gwnS~~CGtC~~lty~g~~~~~si~vlaID~a~-~Gfnis~~Amn~LT~-G~a~~lG~V~~~~~~V~  119 (125)
T 3suk_A           55 GFNSPACGNCYTISFTFQGVTRSINLVAIDHAG-NGFNVAQAAMDELTN-GNAVALGTIDVQSQQVA  119 (125)
T ss_dssp             STTCTTTTCEEEEEEEETTEEEEEEEEEEEECS-SSEEECHHHHHHHHT-SCHHHHCEEEEEEEEEC
T ss_pred             cCCCCCCCeeEEEEEcCCCcceEEEEEEEecCC-CceeecHHHHHHhcC-CcccccceEeEEEEEcC
Confidence            3677999999999983  233999999999864 469999999999974 55556699999999986

>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=98.04  E-value=6e-06  Score=62.24  Aligned_cols=62  Identities=18%  Similarity=0.379  Sum_probs=52.2

Q ss_pred             CCCCCCCcEEEEeeCC---CCCEEEEEEeecCCCCCCCCCHHHHHhhcCCCCCccceeEEEEEEEEe
Q 032389           76 RGQAACGKCLRVTNRG---TGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVN  139 (142)
Q Consensus        76 ~~~~~CGk~vrVTN~~---tGksv~VrIvDrC~~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~fv~  139 (142)
                      .+++.||+|.++|...   +.++|.+.-+|.=.. ++||+++||..|. +|+....|+|.++|+.|+
T Consensus        55 wns~~CGtC~~lty~g~~~~~~si~vlaID~a~~-Gfnis~~Amn~LT-~g~a~~lG~V~~~~~~V~  119 (127)
T 3suj_A           55 YNSPNCGSCYQLTYSSAHTTPKSIYMVAIDRSAE-GFTASKQAMDDLT-NKRAEELGTVNVDVRKVD  119 (127)
T ss_dssp             TTCTTTTCEEEEEECCSSSCCEEEEEEEEEECSS-SEEECHHHHHHHH-TSCHHHHSSEEEEEEEEC
T ss_pred             CCCCCCCceEEEEECCCCCcceEEEEEEEecCCC-ceeecHHHHHHhc-CCccccceeEEEEEEEeC
Confidence            5789999999999762   129999999998654 5999999999997 455566799999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1bw3a_	125	b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [Ta	5e-76

>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 125

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Barwin
domain: Barwin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  219 bits (560), Expect = 5e-76
 Identities = 88/125 (70%), Positives = 99/125 (79%), Gaps = 3/125 (2%)

Query: 21  QSASNVRATYHLYNPERIGWDLN--AARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQ 78
           + A++VRATYH Y P +  WDL   A  AYC+TWDA+KPL+WR KYGWTAFCGP GPRGQ
Sbjct: 1   EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQ 60

Query: 79  AACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDV-GVFRKLDTDGKGNAQGHLMVNYQF 137
           AACGKCLRVTN  TGAQ T RIVDQC+NGGLDLD   VF K+DT+G G  QGHL VNYQF
Sbjct: 61  AACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQF 120

Query: 138 VNCGD 142
           V+C D
Sbjct: 121 VDCRD 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1bw3a_	125	Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}	100.0
d1n10a2	143	Pollen allergen PHL P 1 N-terminal domain {Timothy	99.33
d1wc2a1	180	Endoglucanase (CMCase) {Blue mussel (Mytilus eduli	99.03

>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Barwin
domain: Barwin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=6.2e-65  Score=378.72  Aligned_cols=122  Identities=72%  Similarity=1.326  Sum_probs=119.9

Q ss_pred             hhcCCceeEEeeecCCCCCcccc--ccccccccccCCCCcccccccCceeeeccCCCCCCCCCCcEEEEeeCCCCCEEEE
Q 032389           21 QSASNVRATYHLYNPERIGWDLN--AARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATV   98 (142)
Q Consensus        21 ~s~~~v~aty~~y~p~~~~w~~~--~~s~ycatwd~~~~~a~~~~y~wta~c~~~~p~~~~~CGk~vrVTN~~tGksv~V   98 (142)
                      |+|+|||||||||+|++|||||+  ++|+||||||++|||+||+||||||||||+||+++++||||+||||++||+++++
T Consensus         1 q~a~nVRaTYh~Ynp~~~~wdl~~~a~sayCatwDa~kpL~wr~kygWtAfCgp~gp~gq~sCGkclrvTN~atga~~~~   80 (125)
T d1bw3a_           1 EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITA   80 (125)
T ss_dssp             CEEEEEEEECCCSSCGGGTTCTTSTTTCCTTHHHHTTSCHHHHHHSCCEESCSTTCCCSGGGTTCEEEEEETTTTEEEEE
T ss_pred             CCcccceeEEEeccccccCcccchhhhhhheecccCCCccccccCCCCeEEecCCCCcCcccccceEEeeecccCcEEEE
Confidence            68999999999999999999998  7899999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCCCCC-HHHHHhhcCCCCCccceeEEEEEEEEecCC
Q 032389           99 RIVDQCSNGGLDLD-VGVFRKLDTDGKGNAQGHLMVNYQFVNCGD  142 (142)
Q Consensus        99 rIvDrC~~g~LDLS-~~aF~~I~~~g~G~~~G~l~V~w~fv~C~~  142 (142)
                      ||||+|++|+|||+ +.+|++|+++|+|+++|||.|+|+||+|+|
T Consensus        81 RiVDqCsngGlDLD~~~vFn~iDtdG~G~~~Ghl~V~y~fV~C~d  125 (125)
T d1bw3a_          81 RIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD  125 (125)
T ss_dssp             EEEECCSSSSCCSCSSSSHHHHCSSCHHHHHSEEEEEEEEECCCC
T ss_pred             EEeecccCCCCccccHhhhheecCCCcccccccEEEEEEEecCCC
Confidence            99999999999999 789999999999999999999999999997

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.33  E-value=3.1e-13  Score=100.88  Aligned_cols=66  Identities=23%  Similarity=0.503  Sum_probs=55.7

Q ss_pred             CCCCCCCcEEEEeeCCC----CCEEEEEEeecCC---C-CCCCCCHHHHHhhcCCCCC---ccceeEEEEEEEEecC
Q 032389           76 RGQAACGKCLRVTNRGT----GAQATVRIVDQCS---N-GGLDLDVGVFRKLDTDGKG---NAQGHLMVNYQFVNCG  141 (142)
Q Consensus        76 ~~~~~CGk~vrVTN~~t----Gksv~VrIvDrC~---~-g~LDLS~~aF~~I~~~g~G---~~~G~l~V~w~fv~C~  141 (142)
                      .+...||.|++|++..+    +++|+|+|+|+|+   + ++||||+.||.+|++.+..   +..|+|+|+|+-|+|.
T Consensus        63 ~~g~~CG~cyev~c~~~~~c~~~sv~V~vtd~c~~~~~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~  139 (143)
T d1n10a2          63 KSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCK  139 (143)
T ss_dssp             GGGTTSSCEEEEEECSSTTBCSCCEEEEEEEECSSCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCC
T ss_pred             cCCCcCCcceEeEcCCCCcccCCCEEEEEEecccCCCCCccccCCHHHHhhhccccchhhheecCccceEEEEEecc
Confidence            46688999999999764    6899999999974   2 4799999999999986532   3579999999999995

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=99.03  E-value=2.9e-11  Score=93.97  Aligned_cols=59  Identities=27%  Similarity=0.538  Sum_probs=49.5

Q ss_pred             CCCCCcEEEEeeCC-----------CCCEEEEEEeecCCC--C---------------------CCCCCHHHHHhhcCCC
Q 032389           78 QAACGKCLRVTNRG-----------TGAQATVRIVDQCSN--G---------------------GLDLDVGVFRKLDTDG  123 (142)
Q Consensus        78 ~~~CGk~vrVTN~~-----------tGksv~VrIvDrC~~--g---------------------~LDLS~~aF~~I~~~g  123 (142)
                      ...||+|++||...           .|+||+|+|+|.||.  +                     ++||++ +|.+|+.. 
T Consensus        66 G~~CG~CyeV~C~~~~~~~~~~~~~~g~sV~V~iTd~CP~n~~n~gWCn~p~~~~~~n~~g~~~HFDLs~-af~~ia~~-  143 (180)
T d1wc2a1          66 GQHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLEN-GRSQVTGM-  143 (180)
T ss_dssp             CTTTTCEEEEEEEEEECTTSCCCCCTTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEEC-TTSTTGGG-
T ss_pred             ccccCCEEEEEECCCCCCccCCCCCCCCcEEEEEEecCCCCCCCCCccCCccccccccccCcccceechH-HHHHHhhh-
Confidence            57899999998532           578999999999972  1                     799985 99999974 


Q ss_pred             CCccceeEEEEEEEEecC
Q 032389          124 KGNAQGHLMVNYQFVNCG  141 (142)
Q Consensus       124 ~G~~~G~l~V~w~fv~C~  141 (142)
                         ..|+|+|+|+.|+|+
T Consensus       144 ---~~G~v~V~yrrV~C~  158 (180)
T d1wc2a1         144 ---GWNNPETTWEVVNCD  158 (180)
T ss_dssp             ---TCSSEEEEEEEECHH
T ss_pred             ---cCCcceeEEEEeeCC
Confidence               468999999999994