Citrus Sinensis ID: 032403

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MGKTKKDLLTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDDNDDLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPEGIANAQKSLGLGQEEKARRVR
Secondary Structure (PSIPRED)
ccccHHHHHHccccccccccHHHHHHHccccEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHcccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHccccccccccHHHHHHHHcccEEEEcccccccccEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccEcc
Coil and Loop (DISEMBL)
mgktkkdlltkapwrgggdddeadkfkdaklkvtrepgatptmhvprkvkgsryddvdddnddlqldpqlRYSFQRNYQFLQRVFSIdtvvkplppamaynvsrnLSFFTRiftqffdpegIANAQkslglgqeeKARRVR
Flexible Loop (DISEMBL)
mgktkkdlltkapwrgggdddeadkfkdaklkvtrepgatptmhvprkvkgsryddvdddndDLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPEGIANaqkslglgqeekarrvr
Low Complexity Region (SEG)
MGKTKKDLLTKAPWRgggdddeadkfkdakLKVTREPGATPTMHVPRKVKGSRYddvdddnddlqldPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPEGIANAQKSLGLGQEEKARRVR
Disordered region (IsUnstruct)
*******************************************************************PQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPEGI*******************
Disordered Region (DISOPRED)
*************************************************************DDLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPEGIA******************
Disordered Region (DISEMBL)
MGKTKKDLLTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDDNDDLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPEGIANAQKSLGL**********
Disordered Region (DISPRO)
**********************AD**KDAKLKVTR************************DNDDLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPEGIANAQKSL************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKTKKDLLTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDDNDDLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPEGIANAQKSLGLGQEEKARRVR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
224145099	139	predicted protein [Populus trichocarpa]	0.985	1.0	0.836	2e-58
162286835	137	hypothetical protein [Kalanchoe blossfel	0.964	0.992	0.723	7e-51
255570901	140	conserved hypothetical protein [Ricinus	0.992	1.0	0.794	3e-50
225460223	143	PREDICTED: uncharacterized protein LOC10	0.992	0.979	0.736	3e-50
449447599	136	PREDICTED: uncharacterized protein LOC10	0.943	0.977	0.715	4e-49
297846366	139	hypothetical protein ARALYDRAFT_336448 [	0.964	0.978	0.737	5e-48
18398988	138	uncharacterized protein [Arabidopsis tha	0.943	0.963	0.733	2e-47
357470345	136	hypothetical protein MTR_4g031650 [Medic	0.964	1.0	0.652	8e-47
388502772	134	unknown [Lotus japonicus]	0.929	0.977	0.661	1e-45
351721702	138	uncharacterized protein LOC100500447 [Gl	0.957	0.978	0.654	6e-45

>gi|224145099|ref|XP_002325526.1| predicted protein [Populus trichocarpa] gi|118484488|gb|ABK94119.1| unknown [Populus trichocarpa] gi|222862401|gb|EEE99907.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/141 (83%), Positives = 130/141 (92%), Gaps = 2/141 (1%)

Query: 1   MGKTKKDLLTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDD 60
           M K KK+LL+KAPWRG  DDDE++KFKDAKLKVT +PG+TPTMHVPRK K  R+DD DDD
Sbjct: 1   MTKAKKELLSKAPWRGE-DDDESNKFKDAKLKVTSQPGSTPTMHVPRK-KSQRFDDEDDD 58

Query: 61  NDDLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPE 120
           +  L++DP+LRYSFQRN+QFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPE
Sbjct: 59  DQALEIDPELRYSFQRNFQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPE 118

Query: 121 GIANAQKSLGLGQEEKARRVR 141
           GIANAQKSLGLGQEEKARRVR
Sbjct: 119 GIANAQKSLGLGQEEKARRVR 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162286835|emb|CAP20004.1| hypothetical protein [Kalanchoe blossfeldiana]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 102/141 (72%), Positives = 115/141 (81%), Gaps = 5/141 (3%)

Query: 1   MGKTKKDLLTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDD 60
           M KTKK LL+ APWRGGG+ +    F D +LKVT +PG T TM+VP K K  +    DDD
Sbjct: 1   MSKTKKQLLSSAPWRGGGNVE----FPDGQLKVTNQPGGTATMYVPGK-KSKKGLGRDDD 55

Query: 61  NDDLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPE 120
               ++DP+LRYSFQRNYQF+QRVFSIDT+VKPLPPAMAYNVSRNLSFFTRIFTQFFDPE
Sbjct: 56  ASTPEIDPELRYSFQRNYQFIQRVFSIDTIVKPLPPAMAYNVSRNLSFFTRIFTQFFDPE 115

Query: 121 GIANAQKSLGLGQEEKARRVR 141
           GIANAQKSLG+GQEEK RRVR
Sbjct: 116 GIANAQKSLGIGQEEKVRRVR 136

Source: Kalanchoe blossfeldiana

Species: Kalanchoe blossfeldiana

Genus: Kalanchoe

Family: Crassulaceae

Order: Saxifragales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570901|ref|XP_002526402.1| conserved hypothetical protein [Ricinus communis] gi|223534264|gb|EEF35978.1| conserved hypothetical protein [Ricinus communis]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 112/141 (79%), Positives = 124/141 (87%), Gaps = 1/141 (0%)

Query: 1   MGKTKKDLLTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDD 60
           M K K++LL+KAPWRG   D+E +KFKDAKLKVT +PG+TPTMHVPRK K     D DD+
Sbjct: 1   MAKGKRELLSKAPWRGDDADEETNKFKDAKLKVTNQPGSTPTMHVPRK-KNRNPADDDDE 59

Query: 61  NDDLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPE 120
           +D L+LDP+LRYSFQRN+QFLQRVFSIDTVVKPLPPAM YNVSRNLSFFTRIFTQFFDPE
Sbjct: 60  DDLLELDPELRYSFQRNFQFLQRVFSIDTVVKPLPPAMQYNVSRNLSFFTRIFTQFFDPE 119

Query: 121 GIANAQKSLGLGQEEKARRVR 141
           GIANAQKSLGLGQEEK RRVR
Sbjct: 120 GIANAQKSLGLGQEEKDRRVR 140

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460223|ref|XP_002280799.1| PREDICTED: uncharacterized protein LOC100249874 [Vitis vinifera] gi|296089399|emb|CBI39218.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 106/144 (73%), Positives = 121/144 (84%), Gaps = 4/144 (2%)

Query: 1   MGKTKKDLLTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRK--VKGSRYDDVD 58
           M KTKK LL+ APWRG  D  + DKF+DA+L+ T++PG+  TM+VPRK  VK    D  D
Sbjct: 1   MSKTKKQLLSSAPWRGD-DQQQEDKFQDARLRATKQPGSASTMYVPRKKSVKTRPNDKDD 59

Query: 59  DDNDDL-QLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFF 117
           DD+  L ++DP+LRYSFQRN+QFLQRVFSIDT+VKPLPPAMAYNVSRNLSFFTRIFTQFF
Sbjct: 60  DDDQSLSEIDPELRYSFQRNFQFLQRVFSIDTIVKPLPPAMAYNVSRNLSFFTRIFTQFF 119

Query: 118 DPEGIANAQKSLGLGQEEKARRVR 141
           DPEGIANAQKSLGLGQEEK RRVR
Sbjct: 120 DPEGIANAQKSLGLGQEEKVRRVR 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447599|ref|XP_004141555.1| PREDICTED: uncharacterized protein LOC101206859 [Cucumis sativus] gi|449518623|ref|XP_004166336.1| PREDICTED: uncharacterized LOC101206859 [Cucumis sativus]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 98/137 (71%), Positives = 111/137 (81%), Gaps = 4/137 (2%)

Query: 5   KKDLLTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDDNDDL 64
           KK L + APWRG   ++E D+F  AK+KVT+ PG T  MHVPRK         ++D D L
Sbjct: 4   KKQLASSAPWRG---EEEVDEFAGAKVKVTKNPGETSVMHVPRKKSVKSKSTKEED-DSL 59

Query: 65  QLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPEGIAN 124
           ++DP+LRYSFQRNYQFLQRVFSIDT+VKPLPPAMAYN SRNL+FFTRIFTQFFDPEGIAN
Sbjct: 60  EIDPELRYSFQRNYQFLQRVFSIDTIVKPLPPAMAYNASRNLNFFTRIFTQFFDPEGIAN 119

Query: 125 AQKSLGLGQEEKARRVR 141
           AQKSLGLGQEEK RRVR
Sbjct: 120 AQKSLGLGQEEKDRRVR 136

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846366|ref|XP_002891064.1| hypothetical protein ARALYDRAFT_336448 [Arabidopsis lyrata subsp. lyrata] gi|297336906|gb|EFH67323.1| hypothetical protein ARALYDRAFT_336448 [Arabidopsis lyrata subsp. lyrata]

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 101/137 (73%), Positives = 115/137 (83%), Gaps = 1/137 (0%)

Query: 5   KKDLLTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDDNDDL 64
           KK+LL+KAPWRG  DDDE+DKF +AKLKVT++      MHVP +         DDD+D L
Sbjct: 4   KKELLSKAPWRGD-DDDESDKFSNAKLKVTKDSDGMSKMHVPSRGTKKGSLADDDDDDSL 62

Query: 65  QLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPEGIAN 124
           ++DPQLRYSF RNYQFLQ VF+IDT+VKPLPPAMA+NVSRNLSFFTRIFTQFFDPEGIAN
Sbjct: 63  EIDPQLRYSFNRNYQFLQSVFTIDTLVKPLPPAMAFNVSRNLSFFTRIFTQFFDPEGIAN 122

Query: 125 AQKSLGLGQEEKARRVR 141
           AQKSLGLGQE+KARRVR
Sbjct: 123 AQKSLGLGQEDKARRVR 139

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398988|ref|NP_564429.1| uncharacterized protein [Arabidopsis thaliana] gi|21593921|gb|AAM65886.1| unknown [Arabidopsis thaliana] gi|26449963|dbj|BAC42102.1| unknown protein [Arabidopsis thaliana] gi|28827428|gb|AAO50558.1| unknown protein [Arabidopsis thaliana] gi|110738103|dbj|BAF00984.1| hypothetical protein [Arabidopsis thaliana] gi|332193506|gb|AEE31627.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/139 (73%), Positives = 118/139 (84%), Gaps = 6/139 (4%)

Query: 5   KKDLLTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRK--VKGSRYDDVDDDND 62
           KK+LL+KAPWRG  D+D++DKF +AKLKVT++      MHVP +   KGS     DDD+D
Sbjct: 4   KKELLSKAPWRGD-DEDDSDKFSNAKLKVTKDSDGMSKMHVPSRGTKKGSL---ADDDDD 59

Query: 63  DLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPEGI 122
            L++DPQLRYSF RNYQFLQ VF+IDT+VKPLPP+MA+NVSRNLSFFTRIFTQFFDPEGI
Sbjct: 60  SLEIDPQLRYSFNRNYQFLQSVFTIDTLVKPLPPSMAFNVSRNLSFFTRIFTQFFDPEGI 119

Query: 123 ANAQKSLGLGQEEKARRVR 141
           ANAQKSLGLGQEEKARRVR
Sbjct: 120 ANAQKSLGLGQEEKARRVR 138

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470345|ref|XP_003605457.1| hypothetical protein MTR_4g031650 [Medicago truncatula] gi|217071316|gb|ACJ84018.1| unknown [Medicago truncatula] gi|355506512|gb|AES87654.1| hypothetical protein MTR_4g031650 [Medicago truncatula] gi|388490678|gb|AFK33405.1| unknown [Medicago truncatula]

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 92/141 (65%), Positives = 112/141 (79%), Gaps = 5/141 (3%)

Query: 1   MGKTKKDLLTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDD 60
           M K KK L++ APWRG  ++D  ++F DA LKVT +   T TMHVPR    +   D   D
Sbjct: 1   MAKGKKQLMSSAPWRG--EEDTTEQFPDANLKVTSQSDGTSTMHVPRSKSNTHNHD---D 55

Query: 61  NDDLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPE 120
           +D +++DP+LRYSFQRNYQFLQRVF+IDT+VKPLPP MAYNVSRNL+FFTRIFTQFFDPE
Sbjct: 56  DDGIEIDPELRYSFQRNYQFLQRVFTIDTMVKPLPPVMAYNVSRNLNFFTRIFTQFFDPE 115

Query: 121 GIANAQKSLGLGQEEKARRVR 141
           GIA AQKS+G+GQE++ RRVR
Sbjct: 116 GIAAAQKSMGIGQEDRDRRVR 136

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502772|gb|AFK39452.1| unknown [Lotus japonicus]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/139 (66%), Positives = 111/139 (79%), Gaps = 8/139 (5%)

Query: 3   KTKKDLLTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDDND 62
           K KK LL+ APWRG    D+ + F+DAKLK+T +PG T TMHVPR      +      +D
Sbjct: 4   KGKKQLLSSAPWRG----DDTEDFQDAKLKLTSQPGDTATMHVPRTNPNLHHQH----DD 55

Query: 63  DLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPEGI 122
            +++DPQLRYSFQRN+QFLQRVFSIDTVVKPLPPAM  NVSRNL+FFTRIFTQF+DPEG+
Sbjct: 56  SIEIDPQLRYSFQRNFQFLQRVFSIDTVVKPLPPAMGQNVSRNLNFFTRIFTQFYDPEGL 115

Query: 123 ANAQKSLGLGQEEKARRVR 141
           ANA+KSLG+GQE+K R+VR
Sbjct: 116 ANARKSLGIGQEDKVRKVR 134

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721702|ref|NP_001238242.1| uncharacterized protein LOC100500447 [Glycine max] gi|255630355|gb|ACU15534.1| unknown [Glycine max]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 91/139 (65%), Positives = 110/139 (79%), Gaps = 4/139 (2%)

Query: 3   KTKKDLLTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDDND 62
           K KK L++ APWRG   ++  + FK+ KLKVTR+   T TMHVP   K   +     D+ 
Sbjct: 4   KGKKQLMSSAPWRG---EESEESFKEGKLKVTRQGDGTSTMHVPAS-KSKHHHHDLHDDL 59

Query: 63  DLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFDPEGI 122
            +++DP+LRYSFQRN+QFLQRVFSIDT+VKPLPP MAYNVSRNL+FFTRIFTQFFDPEGI
Sbjct: 60  GIEIDPELRYSFQRNFQFLQRVFSIDTMVKPLPPVMAYNVSRNLNFFTRIFTQFFDPEGI 119

Query: 123 ANAQKSLGLGQEEKARRVR 141
           ANAQKSLG+GQE+K R+VR
Sbjct: 120 ANAQKSLGIGQEDKVRKVR 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2012688	138	AT1G33810 "AT1G33810" [Arabido	0.964	0.985	0.629	2.6e-38

TAIR|locus:2012688 AT1G33810 "AT1G33810" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 90/143 (62%), Positives = 99/143 (69%)

Query:     1 MGKTKKDLLTKAPWRXXXXXXXXXXXXXXXLKVTREPGATPTMHVPRK--VKGSRYXXXX 58
             M K KK+LL+KAPWR               LKVT++      MHVP +   KGS      
Sbjct:     1 MAK-KKELLSKAPWRGDDEDDSDKFSNAK-LKVTKDSDGMSKMHVPSRGTKKGS---LAD 55

Query:    59 XXXXXXXXXPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFD 118
                      PQLRYSF RNYQFLQ VF+IDT+VKPLPP+MA+NVSRNLSFFTRIFTQFFD
Sbjct:    56 DDDDSLEIDPQLRYSFNRNYQFLQSVFTIDTLVKPLPPSMAFNVSRNLSFFTRIFTQFFD 115

Query:   119 PEGIANAQKSLGLGQEEKARRVR 141
             PEGIANAQKSLGLGQEEKARRVR
Sbjct:   116 PEGIANAQKSLGLGQEEKARRVR 138


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      141       113   0.00091  102 3  11 22  0.42    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  507 (54 KB)
  Total size of DFA:  100 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.43u 0.16s 9.59t   Elapsed:  00:00:00
  Total cpu time:  9.43u 0.16s 9.59t   Elapsed:  00:00:00
  Start:  Sat May 11 04:12:06 2013   End:  Sat May 11 04:12:06 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0048003901 SubName- Full=Putative uncharacterized protein; (139 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00