Citrus Sinensis ID: 032443

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKKCRRYPFSGAIVHNILLRQVSHGAGNE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHcccccHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mlgdakvdedgnvydtkdinvmyldkdgedgeinISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSslefgfedgwlSSFYSCLIkkcrrypfsgaIVHNILLRQvshgagne
Flexible Loop (DISEMBL)
mlgdakvdedgnvydtkdiNVMYldkdgedgeINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKKCRRYPFSGAIVHNILlrqvshgagne
Low Complexity Region (SEG)
MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKKCRRYPFSGAIVHNILLRQVSHGAGNE
Disordered region (IsUnstruct)
************VYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKKCRRYPFSGAIVHNILLRQV*******
Disordered Region (DISOPRED)
**G********************************SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKKCRR*****AIVHNILL**********
Disordered Region (DISEMBL)
MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKKCRRYPFSGAIVHNILLRQVSHGAGNE
Disordered Region (DISPRO)
***DAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKKCRRYPFSGAIVHNILLRQVSHG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKKCRRYPFSGAIVHNILLRQVSHGAGNE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
B3DNN5	543	Anaphase-promoting comple	yes	no	0.814	0.209	0.815	5e-42
Q1ZXE6	865	Anaphase-promoting comple	yes	no	0.621	0.100	0.413	7e-15
P41889	671	Anaphase-promoting comple	yes	no	0.692	0.144	0.342	4e-10
Q13042	620	Cell division cycle prote	yes	no	0.514	0.116	0.444	1e-09
Q8R349	620	Cell division cycle prote	yes	no	0.514	0.116	0.444	1e-09
P09798	840	Anaphase-promoting comple	yes	no	0.607	0.101	0.375	1e-08

>sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1

 Score =  169 bits (427), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 93/114 (81%), Positives = 100/114 (87%)

Query: 1   MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWY 60
           MLGDAKVD+DG VYD KD NV+  DKDGED EINISSAICFLRGKAY AL N +QAR WY
Sbjct: 94  MLGDAKVDDDGIVYDAKDGNVIDFDKDGEDREINISSAICFLRGKAYGALQNRSQARQWY 153

Query: 61  KAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
           KAAI ADPLCYEALECLIE+HMLT E+E+SLLSSL+F  EDGWLSSFYSCLIKK
Sbjct: 154 KAAIKADPLCYEALECLIESHMLTSEEESSLLSSLQFSPEDGWLSSFYSCLIKK 207

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication.
Arabidopsis thaliana (taxid: 3702)

>sp|Q1ZXE6|CDC16_DICDI Anaphase-promoting complex subunit 6 OS=Dictyostelium discoideum GN=anapc6 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 54/87 (62%)

Query: 35  ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSS 94
           I S+I  L+GK YE++ N  +A+ WY  A++ D  C+EA E L +NH+LT ++E SLL  
Sbjct: 300 IRSSISCLKGKCYESMDNLKKAKFWYIKALLTDYNCFEAFESLTKNHLLTYQEEISLLEK 359

Query: 95  LEFGFEDGWLSSFYSCLIKKCRRYPFS 121
           L+F  +D W+   YS  +KK     F+
Sbjct: 360 LKFSSDDSWIKEIYSLSLKKYDSPKFT 386

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.

Dictyostelium discoideum (taxid: 44689)

>sp|P41889|CUT9_SCHPO Anaphase-promoting complex subunit cut9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut9 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 8/105 (7%)

Query: 15  DTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL 74
           D K+ N + +    +DG I + +++C+LRG+ Y  L N  +A+  YK A++ D  CYEA 
Sbjct: 182 DEKNANKLLM----QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237

Query: 75  ECLIENHMLTCEQETSLLSSLEFGF---ED-GWLSSFYSCLIKKC 115
           + L+ NH+LT ++E  L+  L +     ED  +L S Y   + K 
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282

Component of the anaphase-promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. May play a pivotal role in the control of anaphase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 42/72 (58%)

Query: 27  DGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE 86
           D E  + +I S+IC LRGK Y+AL N   A   YK A+  D  C+EA + L  +HMLT +
Sbjct: 120 DWEMSQSSIKSSICLLRGKIYDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQ 179

Query: 87  QETSLLSSLEFG 98
           +E  LL SL   
Sbjct: 180 EEKELLESLPLS 191

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Homo sapiens (taxid: 9606)

>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 42/72 (58%)

Query: 27  DGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE 86
           D E  + +I S+IC LRGK Y+AL N   A   YK A+  D  C+EA + L  +HMLT +
Sbjct: 120 DWEMSQSSIKSSICLLRGKIYDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQ 179

Query: 87  QETSLLSSLEFG 98
           +E  LL SL   
Sbjct: 180 EEKELLDSLPLN 191

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

>sp|P09798|CDC16_YEAST Anaphase-promoting complex subunit CDC16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC16 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 30  DGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQET 89
           DG I + S++CFLRGK Y A  N  +AR  ++ AI+ D   +EA E L+  ++LT ++E 
Sbjct: 352 DGGIKMESSLCFLRGKIYFAQNNFNKARDAFREAILVDIKNFEAFEMLLSKNLLTPQEEW 411

Query: 90  SLLSSL---EFGFEDGWLSSFYSCLIKK 114
            L  SL   EFG +   + + Y   + K
Sbjct: 412 DLFDSLDFKEFGEDKEIMKNLYKINLSK 439

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. In early mitosis, the APC/C is activated by CDC20 and targets securin PDS1, the B-type cyclin CLB5, and other anaphase inhibitory proteins for proteolysis, thereby triggering the separation of sister chromatids at the metaphase-to-anaphase transition. In late mitosis and in G1, degradation of CLB5 allows activation of the APC/C by CDH1, which is needed to destroy CDC20 and the B-type cyclin CLB2 to allow exit from mitosis and creating the low CDK state necessary for cytokinesis and for reforming prereplicative complexes in G1 prior to another round of replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
356517052	545	PREDICTED: anaphase-promoting complex su	0.814	0.209	0.859	3e-50
225461701	545	PREDICTED: anaphase-promoting complex su	0.814	0.209	0.877	8e-50
356545461	547	PREDICTED: anaphase-promoting complex su	0.814	0.208	0.850	2e-49
224116978	542	predicted protein [Populus trichocarpa]	0.814	0.210	0.850	3e-49
255578574	469	cell division cycle, putative [Ricinus c	0.814	0.243	0.824	1e-48
255565311	655	cell division cycle, putative [Ricinus c	0.814	0.174	0.824	2e-47
449480915	497	PREDICTED: LOW QUALITY PROTEIN: anaphase	0.814	0.229	0.789	8e-45
449457307	547	PREDICTED: anaphase-promoting complex su	0.814	0.208	0.789	1e-44
326530103	584	predicted protein [Hordeum vulgare subsp	0.814	0.195	0.728	2e-41
297839749	543	cell division cycle family protein [Arab	0.814	0.209	0.824	2e-40

>gi|356517052|ref|XP_003527204.1| PREDICTED: anaphase-promoting complex subunit 6-like [Glycine max]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/114 (85%), Positives = 105/114 (92%)

Query: 1   MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWY 60
           MLG+AKVD+DGNVYD KD NVMYLDKD ED EINISSAICFLRGKAYEAL N AQAR+WY
Sbjct: 94  MLGEAKVDDDGNVYDMKDSNVMYLDKDCEDREINISSAICFLRGKAYEALENRAQARMWY 153

Query: 61  KAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
           KAAI ADPLCYEALECLIENHMLTCE+E +L+SSL+FG EDGWLSSFYSCLIKK
Sbjct: 154 KAAIKADPLCYEALECLIENHMLTCEEEANLISSLQFGSEDGWLSSFYSCLIKK 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461701|ref|XP_002283201.1| PREDICTED: anaphase-promoting complex subunit 6 [Vitis vinifera] gi|302142883|emb|CBI20178.3| unnamed protein product [Vitis vinifera]

 Score =  201 bits (511), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 103/114 (90%)

Query: 1   MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWY 60
           MLGDAKVDE GNV DTKD NVMYLDK+GED EINISSAICFLRGKAYEAL N AQARLWY
Sbjct: 94  MLGDAKVDEHGNVNDTKDCNVMYLDKEGEDREINISSAICFLRGKAYEALENRAQARLWY 153

Query: 61  KAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
           KAAI ADPLCYEALECLIENHMLT E+E SLLSSL+F  EDGWLSSFYSCLIKK
Sbjct: 154 KAAIKADPLCYEALECLIENHMLTSEEEASLLSSLQFAPEDGWLSSFYSCLIKK 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545461|ref|XP_003541161.1| PREDICTED: anaphase-promoting complex subunit 6-like [Glycine max]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/114 (85%), Positives = 104/114 (91%)

Query: 1   MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWY 60
           MLG+AKVD+DGNVYD KD NVMYLDKD ED EINISSAICFLRGKA+EAL N AQARLWY
Sbjct: 94  MLGEAKVDDDGNVYDMKDSNVMYLDKDCEDREINISSAICFLRGKAFEALENRAQARLWY 153

Query: 61  KAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
           KAAI ADPLCYEALECLIENHMLTCE+E +L+SSL+FG EDGWL SFYSCLIKK
Sbjct: 154 KAAIKADPLCYEALECLIENHMLTCEEEANLISSLQFGSEDGWLYSFYSCLIKK 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116978|ref|XP_002331799.1| predicted protein [Populus trichocarpa] gi|222874495|gb|EEF11626.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 97/114 (85%), Positives = 102/114 (89%)

Query: 1   MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWY 60
           MLGDAKVDE G+VYDTKD NVMYLDKD ED EINIS+A CFLRG+AYEAL N A AR WY
Sbjct: 94  MLGDAKVDEHGDVYDTKDCNVMYLDKDSEDREINISAATCFLRGRAYEALENRALARQWY 153

Query: 61  KAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
           KAAI ADPLCYEALECLIENHMLTCE+ET LLSSL+FG EDGWLSSFYSCLIKK
Sbjct: 154 KAAIKADPLCYEALECLIENHMLTCEEETRLLSSLQFGPEDGWLSSFYSCLIKK 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578574|ref|XP_002530149.1| cell division cycle, putative [Ricinus communis] gi|223530348|gb|EEF32241.1| cell division cycle, putative [Ricinus communis]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/114 (82%), Positives = 104/114 (91%)

Query: 1   MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWY 60
           MLGDAKVDE GNV+DTK+ NV+YLDKDGED EINISSAICFLRG+AYEAL N +QAR WY
Sbjct: 94  MLGDAKVDEHGNVFDTKECNVIYLDKDGEDREINISSAICFLRGRAYEALENRSQARQWY 153

Query: 61  KAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
           KAAI ADPLCYEALECL+ENHMLTCE+ETSLLS+L+FG ED WLS FYSCL+KK
Sbjct: 154 KAAIKADPLCYEALECLVENHMLTCEEETSLLSTLQFGPEDEWLSLFYSCLVKK 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565311|ref|XP_002523647.1| cell division cycle, putative [Ricinus communis] gi|223537099|gb|EEF38733.1| cell division cycle, putative [Ricinus communis]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/114 (82%), Positives = 103/114 (90%)

Query: 1   MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWY 60
           MLGDAKVDE GNV+DTK+ NVMYLDKDGED EINISSAICFLRG+AYEAL N +QAR WY
Sbjct: 94  MLGDAKVDEHGNVFDTKECNVMYLDKDGEDREINISSAICFLRGRAYEALENRSQARQWY 153

Query: 61  KAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
           KAAI ADPL YEALECL+ENHMLTCE+ETSLLS+L+FG ED WLS FYSCL+KK
Sbjct: 154 KAAIKADPLGYEALECLVENHMLTCEEETSLLSTLQFGPEDEWLSLFYSCLVKK 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480915|ref|XP_004156029.1| PREDICTED: LOW QUALITY PROTEIN: anaphase-promoting complex subunit 6-like [Cucumis sativus]

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 90/114 (78%), Positives = 98/114 (85%)

Query: 1   MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWY 60
           MLGDA VDE GNV D KD + MYLDKD ED EINI +A CFLRGKAYEAL N  QARLWY
Sbjct: 96  MLGDANVDEHGNVLDNKDHSGMYLDKDCEDREINIVAATCFLRGKAYEALENRTQARLWY 155

Query: 61  KAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
           KAAI ADPLCYEALECLIE+HMLTC++E+SLLSSL+FG EDGWL SFY+CLIKK
Sbjct: 156 KAAIKADPLCYEALECLIESHMLTCDEESSLLSSLQFGPEDGWLPSFYACLIKK 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457307|ref|XP_004146390.1| PREDICTED: anaphase-promoting complex subunit 6-like [Cucumis sativus]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/114 (78%), Positives = 98/114 (85%)

Query: 1   MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWY 60
           MLGDA VDE GNV D KD + MYLDKD ED EINI +A CFLRGKAYEAL N  QARLWY
Sbjct: 96  MLGDANVDEHGNVLDNKDHSGMYLDKDCEDREINIVAATCFLRGKAYEALENRTQARLWY 155

Query: 61  KAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
           KAAI ADPLCYEALECLIE+HMLTC++E+SLLSSL+FG EDGWL SFY+CLIKK
Sbjct: 156 KAAIKADPLCYEALECLIESHMLTCDEESSLLSSLQFGPEDGWLPSFYACLIKK 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326530103|dbj|BAK08331.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/114 (72%), Positives = 95/114 (83%)

Query: 1   MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWY 60
           MLGDAKVDE GNV D  D + +Y DKD ED EINI SAICFLRGKAYEAL N   AR WY
Sbjct: 138 MLGDAKVDEHGNVLDQDDGSDIYFDKDAEDHEINIKSAICFLRGKAYEALDNRDLARQWY 197

Query: 61  KAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
           KAA+  DPLCYEALECL++N+MLTCE+E+ LL+SL+FG EDGWLS+FYSCLI+K
Sbjct: 198 KAAVKVDPLCYEALECLVDNYMLTCEEESELLASLKFGKEDGWLSAFYSCLIRK 251

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839749|ref|XP_002887756.1| cell division cycle family protein [Arabidopsis lyrata subsp. lyrata] gi|297333597|gb|EFH64015.1| cell division cycle family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/114 (82%), Positives = 100/114 (87%)

Query: 1   MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWY 60
           MLGDAKVDEDG VYD KD NV+  DKDGED EINISSAICFLRGKAY AL N +QAR WY
Sbjct: 94  MLGDAKVDEDGIVYDAKDGNVIDFDKDGEDREINISSAICFLRGKAYGALQNRSQARQWY 153

Query: 61  KAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
           KAAI ADPLCYEALECLIE+HMLT E+E+SLLSSL+F  EDGWLSSFYSCLIKK
Sbjct: 154 KAAIKADPLCYEALECLIESHMLTSEEESSLLSSLQFSPEDGWLSSFYSCLIKK 207

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2037523	543	APC6 "anaphase promoting compl	0.814	0.209	0.815	7.1e-45
DICTYBASE|DDB_G0286233	865	anapc6 "anaphase promoting com	0.571	0.092	0.437	2.9e-14
POMBASE|SPAC6F12.15c	671	cut9 "anaphase-promoting compl	0.685	0.143	0.346	6.8e-11
UNIPROTKB|E2R5H6	620	CDC16 "Uncharacterized protein	0.492	0.111	0.478	2.1e-10
UNIPROTKB|Q7Z651	526	CDC16 "CDC16 cell division cyc	0.492	0.131	0.463	5.5e-10
UNIPROTKB|E1BPM5	620	CDC16 "Uncharacterized protein	0.492	0.111	0.463	7.1e-10
UNIPROTKB|Q13042	620	CDC16 "Cell division cycle pro	0.492	0.111	0.463	7.1e-10
UNIPROTKB|I3L944	620	CDC16 "Uncharacterized protein	0.492	0.111	0.463	7.1e-10
MGI|MGI:1917207	620	Cdc16 "CDC16 cell division cyc	0.492	0.111	0.463	7.1e-10
RGD|1305076	620	Cdc16 "cell division cycle 16"	0.492	0.111	0.463	7.1e-10

TAIR|locus:2037523 APC6 "anaphase promoting complex 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 93/114 (81%), Positives = 100/114 (87%)

Query:     1 MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWY 60
             MLGDAKVD+DG VYD KD NV+  DKDGED EINISSAICFLRGKAY AL N +QAR WY
Sbjct:    94 MLGDAKVDDDGIVYDAKDGNVIDFDKDGEDREINISSAICFLRGKAYGALQNRSQARQWY 153

Query:    61 KAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
             KAAI ADPLCYEALECLIE+HMLT E+E+SLLSSL+F  EDGWLSSFYSCLIKK
Sbjct:   154 KAAIKADPLCYEALECLIESHMLTSEEESSLLSSLQFSPEDGWLSSFYSCLIKK 207

GO:0005634 "nucleus" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0032875 "regulation of DNA endoreduplication" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0007276 "gamete generation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009555 "pollen development" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016568 "chromatin modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

DICTYBASE|DDB_G0286233 anapc6 "anaphase promoting complex subunit 6" [Dictyostelium discoideum (taxid:44689)]

 Score = 195 (73.7 bits), Expect = 2.9e-14, P = 2.9e-14
 Identities = 35/80 (43%), Positives = 52/80 (65%)

Query:    35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSS 94
             I S+I  L+GK YE++ N  +A+ WY  A++ D  C+EA E L +NH+LT ++E SLL  
Sbjct:   300 IRSSISCLKGKCYESMDNLKKAKFWYIKALLTDYNCFEAFESLTKNHLLTYQEEISLLEK 359

Query:    95 LEFGFEDGWLSSFYSCLIKK 114
             L+F  +D W+   YS  +KK
Sbjct:   360 LKFSSDDSWIKEIYSLSLKK 379

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0007088 "regulation of mitosis" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

POMBASE|SPAC6F12.15c cut9 "anaphase-promoting complex subunit Cut9" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 162 (62.1 bits), Expect = 6.8e-11, P = 6.8e-11
 Identities = 36/104 (34%), Positives = 59/104 (56%)

Query:    15 DTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL 74
             D K+ N + +    +DG I + +++C+LRG+ Y  L N  +A+  YK A++ D  CYEA 
Sbjct:   182 DEKNANKLLM----QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237

Query:    75 ECLIENHMLTCEQETSLLSSLEFGF---EDG-WLSSFYSCLIKK 114
             + L+ NH+LT ++E  L+  L +     ED  +L S Y   + K
Sbjct:   238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281

GO:0005515 "protein binding" evidence=IPI

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008054 "cyclin catabolic process" evidence=IC

GO:0016567 "protein ubiquitination" evidence=IC

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IMP

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IC

GO:0090329 "regulation of DNA-dependent DNA replication" evidence=IMP

UNIPROTKB|E2R5H6 CDC16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 33/69 (47%), Positives = 43/69 (62%)

Query:    27 DGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE 86
             D E  + +I S+IC LRGK Y+AL N A A   YK A+  D  C+EA + L  +HMLT +
Sbjct:   120 DWEMSQSSIKSSICLLRGKIYDALDNRALATYSYKEALKLDAYCFEAFDLLTSHHMLTAQ 179

Query:    87 QETSLLSSL 95
             +E  LL SL
Sbjct:   180 EEKELLESL 188

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|Q7Z651 CDC16 "CDC16 cell division cycle 16 homolog (S. cerevisiae), isoform CRA_h" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 5.5e-10, P = 5.5e-10
 Identities = 32/69 (46%), Positives = 42/69 (60%)

Query:    27 DGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE 86
             D E  + +I S+IC LRGK Y+AL N   A   YK A+  D  C+EA + L  +HMLT +
Sbjct:    26 DWEMSQSSIKSSICLLRGKIYDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQ 85

Query:    87 QETSLLSSL 95
             +E  LL SL
Sbjct:    86 EEKELLESL 94

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BPM5 CDC16 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 152 (58.6 bits), Expect = 7.1e-10, P = 7.1e-10
 Identities = 32/69 (46%), Positives = 42/69 (60%)

Query:    27 DGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE 86
             D E  + +I S+IC LRGK Y+AL N   A   YK A+  D  C+EA + L  +HMLT +
Sbjct:   120 DWEMSQSSIKSSICLLRGKIYDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQ 179

Query:    87 QETSLLSSL 95
             +E  LL SL
Sbjct:   180 EEKELLDSL 188

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|Q13042 CDC16 "Cell division cycle protein 16 homolog" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 7.1e-10, P = 7.1e-10
 Identities = 32/69 (46%), Positives = 42/69 (60%)

Query:    27 DGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE 86
             D E  + +I S+IC LRGK Y+AL N   A   YK A+  D  C+EA + L  +HMLT +
Sbjct:   120 DWEMSQSSIKSSICLLRGKIYDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQ 179

Query:    87 QETSLLSSL 95
             +E  LL SL
Sbjct:   180 EEKELLESL 188

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0005819 "spindle" evidence=TAS

GO:0007088 "regulation of mitosis" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005813 "centrosome" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|I3L944 CDC16 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 152 (58.6 bits), Expect = 7.1e-10, P = 7.1e-10
 Identities = 32/69 (46%), Positives = 42/69 (60%)

Query:    27 DGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE 86
             D E  + +I S+IC LRGK Y+AL N   A   YK A+  D  C+EA + L  +HMLT +
Sbjct:   120 DWEMSQSSIKSSICLLRGKIYDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQ 179

Query:    87 QETSLLSSL 95
             +E  LL SL
Sbjct:   180 EEKELLESL 188

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

MGI|MGI:1917207 Cdc16 "CDC16 cell division cycle 16" [Mus musculus (taxid:10090)]

 Score = 152 (58.6 bits), Expect = 7.1e-10, P = 7.1e-10
 Identities = 32/69 (46%), Positives = 42/69 (60%)

Query:    27 DGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE 86
             D E  + +I S+IC LRGK Y+AL N   A   YK A+  D  C+EA + L  +HMLT +
Sbjct:   120 DWEMSQSSIKSSICLLRGKIYDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQ 179

Query:    87 QETSLLSSL 95
             +E  LL SL
Sbjct:   180 EEKELLDSL 188

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005876 "spindle microtubule" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

RGD|1305076 Cdc16 "cell division cycle 16" [Rattus norvegicus (taxid:10116)]

 Score = 152 (58.6 bits), Expect = 7.1e-10, P = 7.1e-10
 Identities = 32/69 (46%), Positives = 42/69 (60%)

Query:    27 DGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE 86
             D E  + +I S+IC LRGK Y+AL N   A   YK A+  D  C+EA + L  +HMLT +
Sbjct:   120 DWEMSQSSIKSSICLLRGKIYDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQ 179

Query:    87 QETSLLSSL 95
             +E  LL SL
Sbjct:   180 EEKELLDSL 188

GO:0005634 "nucleus" evidence=ISO

GO:0005680 "anaphase-promoting complex" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005876 "spindle microtubule" evidence=IEA;ISO

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA;ISO

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3DNN5	CDC16_ARATH	No assigned EC number	0.8157	0.8142	0.2099	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.92
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.17
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.91
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.85
PF13428	44	TPR_14: Tetratricopeptide repeat	97.45
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.44
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.14
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.98
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.69
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.32
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.6
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.3
PRK11189	296	lipoprotein NlpI; Provisional	95.07
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	95.05
PF13371	73	TPR_9: Tetratricopeptide repeat	95.03
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	94.49
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	94.26
TIGR02552	135	LcrH_SycD type III secretion low calcium response	94.16
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.02
PRK11189	296	lipoprotein NlpI; Provisional	93.98
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.95
PRK15359	144	type III secretion system chaperone protein SscB;	93.94
KOG0553	304	consensus TPR repeat-containing protein [General f	93.9
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	93.71
PRK15359	144	type III secretion system chaperone protein SscB;	93.5
PRK10370	198	formate-dependent nitrite reductase complex subuni	93.48
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	93.32
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.16
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.56
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	92.55
TIGR02552	135	LcrH_SycD type III secretion low calcium response	92.11
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	91.91
KOG1129	478	consensus TPR repeat-containing protein [General f	91.76
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	91.36
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	91.1
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	91.09
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	90.94
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	90.85
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	90.81
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	90.49
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	90.48
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	90.3
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	90.19
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	90.01
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	89.65
PRK12370	553	invasion protein regulator; Provisional	89.41
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	89.17
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	88.96
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	88.83
PRK14720	906	transcript cleavage factor/unknown domain fusion p	88.67
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	88.67
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	88.65
KOG1125	579	consensus TPR repeat-containing protein [General f	88.21
PRK11788	389	tetratricopeptide repeat protein; Provisional	88.08
KOG0553	304	consensus TPR repeat-containing protein [General f	87.97
PF13431	34	TPR_17: Tetratricopeptide repeat	87.9
KOG1125	579	consensus TPR repeat-containing protein [General f	87.83
PRK12370	553	invasion protein regulator; Provisional	87.75
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	87.47
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	87.25
PLN02789	320	farnesyltranstransferase	87.25
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	87.07
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	87.03
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	86.73
KOG4507	886	consensus Uncharacterized conserved protein, conta	86.2
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	86.16
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	86.03
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	85.82
PLN02789	320	farnesyltranstransferase	85.56
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	85.44
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	85.29
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	85.28
PF13371	73	TPR_9: Tetratricopeptide repeat	84.98
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	84.79
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	83.67
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	83.55
PRK11788	389	tetratricopeptide repeat protein; Provisional	83.27
KOG1126	638	consensus DNA-binding cell division cycle control	83.06
PF14929	547	TAF1_subA: TAF RNA Polymerase I subunit A	82.85
PF04212	69	MIT: MIT (microtubule interacting and transport) d	82.48
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	82.44
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	82.4
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	82.26
KOG2076	895	consensus RNA polymerase III transcription factor	82.22
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	81.97
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	81.86
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	81.85
PF03704	146	BTAD: Bacterial transcriptional activator domain;	81.42
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	81.05
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	80.75
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	80.4
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	80.3

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.6e-26  Score=207.50  Aligned_cols=133  Identities=38%  Similarity=0.539  Sum_probs=116.8

Q ss_pred             CCCCcccccCCCcccccc-cchhccCCCCCCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443            1 MLGDAKVDEDGNVYDTKD-INVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus         1 ~l~~~~~~~~g~v~~~~~-~~~~~~~~~~~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +||+.+++..+-..++.+ ++.+..+...++++|+++|||||||||+|.+++||++|++||++||..|++|||||++||+
T Consensus       104 vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs  183 (611)
T KOG1173|consen  104 VLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVS  183 (611)
T ss_pred             HhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            466667778888888888 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHhcCCCCc----hhHHHHHHHHHhhhccCCCcchhhhhccceeeecc
Q 032443           80 NHMLTCEQETSLLSSLEFGF----EDGWLSSFYSCLIKKCRRYPFSGAIVHNILLRQVS  134 (140)
Q Consensus        80 ~~lLt~~EE~eLl~sL~f~~----e~~~lk~lY~srL~Ky~~~~~~~~~~~~~~~~~~~  134 (140)
                      +||||++|||+|+.+||++.    +.+.++.+|..++.|+.+....- ..|+.++-.+.
T Consensus       184 ~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~-r~~~~sl~~l~  241 (611)
T KOG1173|consen  184 AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLT-RNEDESLIGLA  241 (611)
T ss_pred             HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccc-cCchhhhhhhh
Confidence            99999999999999999983    66899999999988888776552 35555443333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.17  E-value=4.4e-06  Score=47.70  Aligned_cols=33  Identities=30%  Similarity=0.446  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLC   70 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C   70 (140)
                      -.++.+|.+|..+++++.|+.+|++||++||.+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            467889999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.91  E-value=3.2e-05  Score=43.52  Aligned_cols=33  Identities=30%  Similarity=0.487  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLC   70 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C   70 (140)
                      -.++.+|.+|..++++++|+++|.+||+++|.+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            467788999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.85  E-value=2.9e-05  Score=44.04  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPL   69 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~   69 (140)
                      |-+++++|++|..++++++|+.+|++|+.++|.
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            357899999999999999999999999999883

...

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.45  E-value=0.00052  Score=41.77  Aligned_cols=39  Identities=28%  Similarity=0.318  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      .+..|++|..+|++++|..+|..+|+.+|.+-+|...|.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            456699999999999999999999999999999988775

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.44  E-value=0.00037  Score=44.54  Aligned_cols=47  Identities=26%  Similarity=0.225  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML   83 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL   83 (140)
                      |-..+.+|.+|..++++++|..+|.+|+++||.+.+++-.+=.-++-
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~   49 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK   49 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999998877544433

...

>smart00028 TPR Tetratricopeptide repeats

Probab=97.14  E-value=0.00091  Score=34.02  Aligned_cols=32  Identities=31%  Similarity=0.484  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPL   69 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~   69 (140)
                      ..++.+|.+|..+++++.|..+|.++++++|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35678899999999999999999999999875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.98  E-value=0.0015  Score=38.42  Aligned_cols=27  Identities=26%  Similarity=0.493  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIA   66 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~   66 (140)
                      ++.| |.+|..++++++|.++|++||.+
T Consensus         2 l~~L-g~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNL-GRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHH-HHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHcCCHHHHHHHHHHHHHh
Confidence            4555 99999999999999999997754

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.69  E-value=0.0032  Score=40.13  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 032443           36 SSAICFLRGKAYEALG-NCAQARLWYKAAIIADP   68 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~-N~~~A~~~YkeAL~~Dv   68 (140)
                      .+...+-||.||..++ +..+|..+|..||++||
T Consensus        36 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   36 NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4567888899999999 79999999999999998

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.32  E-value=0.008  Score=38.04  Aligned_cols=37  Identities=24%  Similarity=0.143  Sum_probs=25.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           42 LRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        42 LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      -+|++|...++++.|..+|.++|+.+|.+.++.-.|-
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg   38 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLG   38 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            4566777777777777777777777777777665554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.60  E-value=0.033  Score=35.18  Aligned_cols=35  Identities=23%  Similarity=0.358  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLC   70 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C   70 (140)
                      .+-.-+..|.|+..+++.+.|..+|.+++..+|..
T Consensus        30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen   30 NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            45566778999999999999999999999999964

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.30  E-value=0.041  Score=43.99  Aligned_cols=60  Identities=23%  Similarity=0.201  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHH--HHHHHHhcC
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE--QETSLLSSL   95 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~--EE~eLl~sL   95 (140)
                      .+...+.+|.+|...|+.++|..+|++||+.+|..-++...|+---+=+..  +-.++|..+
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~  206 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRL  206 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            445677899999999999999999999999999999999988765442222  224555443

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.07  E-value=0.064  Score=44.22  Aligned_cols=44  Identities=27%  Similarity=0.307  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      .+...+.||.+|..+++++.|...|..|+.++|...+|+..|-.
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  106 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGI  106 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            35567888888888888888888888888888888887766543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=95.05  E-value=0.033  Score=53.43  Aligned_cols=46  Identities=26%  Similarity=0.396  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      +.++.||+||++++..+++..|+++|..||.+||.-..+.-+|-+-
T Consensus       682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~  727 (799)
T KOG4162|consen  682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAEL  727 (799)
T ss_pred             hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            5678899999999999999999999999999999999998877543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.03  E-value=0.057  Score=34.49  Aligned_cols=39  Identities=18%  Similarity=0.124  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL   74 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAF   74 (140)
                      .....+.+|.+|..++++..|.++|..+|..+|..-++-
T Consensus        28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen   28 DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            456678899999999999999999999999999776653

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=94.49  E-value=0.13  Score=30.78  Aligned_cols=40  Identities=28%  Similarity=0.197  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      .++.+|.+|..+++.+.|..+|..++...+...+++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   75 (100)
T cd00189          36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG   75 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence            3455566676677777777777777766666665544444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=94.26  E-value=0.19  Score=30.05  Aligned_cols=41  Identities=27%  Similarity=0.315  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      .++.+|.+|..++++++|..+|.++++.+|....++-.+..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   42 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAA   42 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            36778999999999999999999999999988766655444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=94.16  E-value=0.089  Score=36.93  Aligned_cols=45  Identities=16%  Similarity=-0.030  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      .+.+.+|.+|..+++++.|..+|..++..+|...+.+-.+-.-++
T Consensus        52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   96 (135)
T TIGR02552        52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            344555777877888888888888888888877777655443333

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.02  E-value=0.14  Score=43.72  Aligned_cols=71  Identities=20%  Similarity=0.092  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC--CHHHHHHHH-hcCCCCchh----HHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML--TCEQETSLL-SSLEFGFED----GWLSSF  107 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL--t~~EE~eLl-~sL~f~~e~----~~lk~l  107 (140)
                      +...+.||.+|..+++++.|..+|..||.+||.+.+|+-.|-.-++.  -.++-...+ ..|.+.+.+    .|+...
T Consensus        36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45678899999999999999999999999999999999887433322  223333333 456665432    455544

>PRK11189 lipoprotein NlpI; Provisional

Probab=93.98  E-value=0.16  Score=41.88  Aligned_cols=46  Identities=26%  Similarity=0.309  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHccCC
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADP-LCYEALECLIENHML   83 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv-~CyEAFe~Lv~~~lL   83 (140)
                      ..++.+|++|..+|+.+.|..+|+.|+..+| ...|+--++++-..+
T Consensus       237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~  283 (296)
T PRK11189        237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL  283 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            3567779999999999999999999999997 556666666654433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.95  E-value=0.17  Score=28.76  Aligned_cols=29  Identities=31%  Similarity=0.311  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIA   66 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~   66 (140)
                      +++..| |.+|..++++..|..+|.+|+.+
T Consensus         3 ~~~~~l-a~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNL-ANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHH-HHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHhhhhcchhhHHHHHHHHH
Confidence            445555 99999999999999999999875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=93.94  E-value=0.13  Score=38.17  Aligned_cols=40  Identities=20%  Similarity=0.267  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      .+-+|.++..+++++.|..+|..|+.+||.+.+++..|-.
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   66 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAG   66 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            3346778888888888888888888888888877766554

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.90  E-value=0.1  Score=45.29  Aligned_cols=30  Identities=40%  Similarity=0.381  Sum_probs=19.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 032443           44 GKAYEALGNCAQARLWYKAAIIADPLCYEA   73 (140)
Q Consensus        44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEA   73 (140)
                      |++|.++|++..|.+.||.||.+||.+-..
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~  185 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNESY  185 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcHHH
Confidence            666666666666666666666666666543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=93.71  E-value=0.15  Score=33.11  Aligned_cols=30  Identities=20%  Similarity=0.268  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIA   66 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~   66 (140)
                      +..+...|.+|..++++++|..+|.+||.+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~   34 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDI   34 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455667799999999999999999999976

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=93.50  E-value=0.22  Score=37.04  Aligned_cols=42  Identities=14%  Similarity=0.039  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ...+.+|.++.++++.+.|..+|..|+.+||...+++..|-.
T Consensus        59 ~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~  100 (144)
T PRK15359         59 RAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGV  100 (144)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            345667999999999999999999999999999999987765

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=93.48  E-value=0.24  Score=38.97  Aligned_cols=61  Identities=18%  Similarity=0.103  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc------cCCCHHHHHHHHhcCCCCc
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN------HMLTCEQETSLLSSLEFGF   99 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~------~lLt~~EE~eLl~sL~f~~   99 (140)
                      ..+..|++|..+|+++.|..+|..|++++|...+++-.+-.-      +.++.+-..-|-..|...+
T Consensus        75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP  141 (198)
T PRK10370         75 QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA  141 (198)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence            467779999999999999999999999999999998775442      2234444444445666655

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=93.32  E-value=0.12  Score=37.88  Aligned_cols=30  Identities=30%  Similarity=0.410  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 032443           35 ISSAICFLRGKAYEALGNCAQARLWYKAAI   64 (140)
Q Consensus        35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL   64 (140)
                      ..+....++|-||.++|+++.|+..|+.||
T Consensus       116 ~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  116 FKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            467788899999999999999999999986

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.16  E-value=0.16  Score=27.71  Aligned_cols=29  Identities=21%  Similarity=0.358  Sum_probs=25.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPL   69 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~   69 (140)
                      |-.|+||..+++.++|+..|.+.+..-|.
T Consensus         4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            44599999999999999999999987764

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.56  E-value=0.39  Score=31.39  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE   75 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe   75 (140)
                      ++|| +..|-.+++.++|+.+-..+|+++|.|-.|-+
T Consensus         4 lY~l-Aig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    4 LYYL-AIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHH-HHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             HHHH-HHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            4455 99999999999999999999999999988754

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=92.55  E-value=0.42  Score=35.93  Aligned_cols=41  Identities=27%  Similarity=0.340  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      +..++..|.+|..+++.+.|..+|.+|+..+|....++..+
T Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            34566667777777777777777777777777776666544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=92.11  E-value=0.39  Score=33.64  Aligned_cols=46  Identities=11%  Similarity=0.011  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML   83 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL   83 (140)
                      ..-+.+|.+|...++...|.++|..++..+|...++...+-...+.
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   63 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM   63 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            3356779999999999999999999999999988888777665544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=91.91  E-value=0.44  Score=40.75  Aligned_cols=40  Identities=13%  Similarity=0.047  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      ...+.+|.+|..+++++.|..+|.+|+++||..-++...+
T Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         71 KAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3477889999999999999999999999999988876554

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.76  E-value=0.07  Score=48.03  Aligned_cols=54  Identities=20%  Similarity=0.276  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLL   92 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl   92 (140)
                      +-+=..+|||+|++.+.|.+.||.+|+.++.+.||.-+.-.+|.-+..-|..|.
T Consensus       292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr  345 (478)
T KOG1129|consen  292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR  345 (478)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence            333347899999999999999999999999999999999888888887776654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=91.36  E-value=0.36  Score=31.29  Aligned_cols=30  Identities=23%  Similarity=0.315  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIA   66 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~   66 (140)
                      +...+-.|.||..+++.++|.++|.+|+.+
T Consensus        46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   46 ANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            455556699999999999999999999976

...

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.10  E-value=0.32  Score=46.90  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=29.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      -|-+|-.+||.+.|..||++||+++|..-+|+.-+
T Consensus       394 La~i~kqqgnl~~Ai~~YkealrI~P~fAda~~Nm  428 (966)
T KOG4626|consen  394 LASIYKQQGNLDDAIMCYKEALRIKPTFADALSNM  428 (966)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhc
Confidence            38889999999999999999999999888877543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=91.09  E-value=0.54  Score=42.22  Aligned_cols=41  Identities=27%  Similarity=0.158  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      +...+.+|.+|..+++++.|..+|.+||.++|.+.+++-.|
T Consensus       399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l  439 (615)
T TIGR00990       399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL  439 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence            34567778888888888888888888888888887776554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=90.94  E-value=0.57  Score=42.12  Aligned_cols=44  Identities=23%  Similarity=0.096  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      ...+-+|.||..++++++|.++|..||.+||.+.+|+..+-.-+
T Consensus       161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~  204 (615)
T TIGR00990       161 VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY  204 (615)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34566899999999999999999999999999998887764433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=90.85  E-value=1.1  Score=32.33  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=20.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      +.+|.+|..++++++|...|.+|+..+|....++..+
T Consensus        69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  105 (234)
T TIGR02521        69 LALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY  105 (234)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            3445566666666666666666666655554444333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=90.81  E-value=0.64  Score=42.30  Aligned_cols=50  Identities=12%  Similarity=0.007  Sum_probs=41.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           30 DGEINISSAICFLRGKAYEALGN---CAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        30 d~gikl~ssmc~LRGk~yeal~N---~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ...-+..|--|||||+-|....+   ..+|..+|.+|+.+||..-.|+-.|.-
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~  384 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKAL  384 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34456789999999999977655   779999999999999999888887543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=90.49  E-value=0.58  Score=29.31  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLC   70 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C   70 (140)
                      +.+..|+||..+|++++|...+..++..+|..
T Consensus        27 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen   27 ARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            44456788888888888888888888888875

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=90.48  E-value=0.94  Score=30.28  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLC   70 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C   70 (140)
                      +...+.+|++|...++.+.|...|+.++..+|..
T Consensus        39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795        39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence            4467788999999999999999999999988764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.30  E-value=0.57  Score=42.14  Aligned_cols=39  Identities=33%  Similarity=0.373  Sum_probs=35.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      |=||+|+.+++.++.|+.-|+.|++++|.+-+|=.+|+.
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~  333 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK  333 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            568999999999999999999999999999999877763

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=90.19  E-value=1.2  Score=31.99  Aligned_cols=42  Identities=24%  Similarity=0.127  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ..+..|.+|..+++.+.|..+|.+++..+|.+.+++..|..-
T Consensus       137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~  178 (234)
T TIGR02521       137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL  178 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence            345569999999999999999999999999988887766443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=90.01  E-value=0.87  Score=39.67  Aligned_cols=47  Identities=30%  Similarity=0.344  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      .+.+.+++|.+|..++++++|..+|..|+..+|.+.+++-.|..-.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  170 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL  170 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            45678889999999999999999999999999999888877765443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=89.65  E-value=0.49  Score=37.42  Aligned_cols=41  Identities=17%  Similarity=-0.003  Sum_probs=35.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC
Q 032443           43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML   83 (140)
Q Consensus        43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL   83 (140)
                      -|-|+-+++++..|.++|..|+.+||.++++...+=.-+|.
T Consensus        75 LG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         75 LGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            49999999999999999999999999999998776555444

>PRK12370 invasion protein regulator; Provisional

Probab=89.41  E-value=0.91  Score=40.74  Aligned_cols=50  Identities=22%  Similarity=0.166  Sum_probs=40.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           30 DGEINISSAICFLRGKAYEALG---NCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        30 d~gikl~ssmc~LRGk~yeal~---N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ...-+++|..+||||+.+....   +..+|..+|.+|+.+||.+..|+..|-.
T Consensus       251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~  303 (553)
T PRK12370        251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAE  303 (553)
T ss_pred             CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            3446689999999999775543   4679999999999999999998866543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=89.17  E-value=0.81  Score=30.35  Aligned_cols=27  Identities=22%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAA   63 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeA   63 (140)
                      ....++.|+||..+++.+.|...|.+|
T Consensus        58 ~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   58 PDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            345556699999999999999988875

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=88.96  E-value=0.55  Score=46.41  Aligned_cols=76  Identities=21%  Similarity=0.277  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHccCCCHHHHH------HHHhcCCCCch-hHHHHHH
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCY-EALECLIENHMLTCEQET------SLLSSLEFGFE-DGWLSSF  107 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy-EAFe~Lv~~~lLt~~EE~------eLl~sL~f~~e-~~~lk~l  107 (140)
                      .|=-||..||+|=++||+++|+..|.+|++.|+.+| =++--|.+-+|.-.+=|.      .++..+|=..+ ..++-.|
T Consensus       306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L  385 (1018)
T KOG2002|consen  306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL  385 (1018)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence            344499999999999999999999999999999883 234444433333322221      23344444433 3566777


Q ss_pred             HHHh
Q 032443          108 YSCL  111 (140)
Q Consensus       108 Y~sr  111 (140)
                      |..+
T Consensus       386 ya~~  389 (1018)
T KOG2002|consen  386 YAHS  389 (1018)
T ss_pred             HHhh
Confidence            7665

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=88.83  E-value=3  Score=38.94  Aligned_cols=75  Identities=19%  Similarity=0.204  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHh-cCCCCchhHHHHHHHHHhhh
Q 032443           35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLS-SLEFGFEDGWLSSFYSCLIK  113 (140)
Q Consensus        35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~-sL~f~~e~~~lk~lY~srL~  113 (140)
                      ..+-+-||+|.++-.+++.++|..+|++++..=|...+|+..|-  .++|+.|-..++. +|+-  +..|++.++..+.-
T Consensus       162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~--~lit~~e~~~~l~~~l~~--~~h~M~~~F~~~a~  237 (559)
T KOG1155|consen  162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELS--ELITDIEILSILVVGLPS--DMHWMKKFFLKKAY  237 (559)
T ss_pred             chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHH--HhhchHHHHHHHHhcCcc--cchHHHHHHHHHHH
Confidence            35778999999999999999999999999999999999999996  5788888776664 5652  24566666554443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=88.67  E-value=0.73  Score=45.18  Aligned_cols=38  Identities=18%  Similarity=0.107  Sum_probs=33.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      +-.|.||..+++.++|...|.++|++||.+.+|++.+-
T Consensus       120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~A  157 (906)
T PRK14720        120 RTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLA  157 (906)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            44599999999999999999999999999999886653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=88.67  E-value=1.6  Score=32.46  Aligned_cols=34  Identities=18%  Similarity=0.137  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPL   69 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~   69 (140)
                      .+...+..|.++..+++++.|..+|+.|+.+.+.
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~   67 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID   67 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc
Confidence            4444445566666666666666666666665443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=88.65  E-value=0.61  Score=42.44  Aligned_cols=32  Identities=31%  Similarity=0.260  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCY   71 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy   71 (140)
                      +.++|++|+..|+.+.|.++|.+|+++||..-
T Consensus       456 ~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        456 YVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            66779999999999999999999999999853

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=88.21  E-value=0.6  Score=43.76  Aligned_cols=36  Identities=25%  Similarity=0.238  Sum_probs=33.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      -|.+|-..+.|+||+.||..||.++|..|==+++|=
T Consensus       436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLG  471 (579)
T KOG1125|consen  436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLG  471 (579)
T ss_pred             hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhh
Confidence            399999999999999999999999999998888874

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=88.08  E-value=1.3  Score=36.34  Aligned_cols=46  Identities=13%  Similarity=0.039  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      ..+-.|.+|.++...++.++|...|.+|+..||.+.+++..|..-.
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   79 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLF   79 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            4556677899999999999999999999999999999887766543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.97  E-value=0.83  Score=39.82  Aligned_cols=66  Identities=23%  Similarity=0.216  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC-CC-HHHHHH-HHhcCCCCchhH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM-LT-CEQETS-LLSSLEFGFEDG  102 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l-Lt-~~EE~e-Ll~sL~f~~e~~  102 (140)
                      |-.+.-|.-+|..|+..+.|++-.+.||.+||+-..||-+|=--.+ +. .+|-.+ +=--|.+.|+.+
T Consensus       115 AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  115 AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            3456779999999999999999999999999999999998732221 11 111111 223478877655

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=87.90  E-value=0.43  Score=27.91  Aligned_cols=21  Identities=38%  Similarity=0.384  Sum_probs=18.5

Q ss_pred             HHHHHHhcCCCcHHHHHHHHH
Q 032443           59 WYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        59 ~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ||+.||.+||.+.+|+..|=.
T Consensus         1 ~y~kAie~~P~n~~a~~nla~   21 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLAN   21 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHH
Confidence            699999999999999987743

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.83  E-value=0.8  Score=42.94  Aligned_cols=41  Identities=24%  Similarity=0.105  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      |+| |.++.-.+|=.+|+...++||.+||++-||+..|-=.|
T Consensus       323 ~~L-G~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy  363 (579)
T KOG1125|consen  323 QKL-GITQAENENEQNAISALRRCLELDPTNLEALMALAVSY  363 (579)
T ss_pred             HHh-hhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            556 99999999999999999999999999999999886443

>PRK12370 invasion protein regulator; Provisional

Probab=87.75  E-value=1.4  Score=39.56  Aligned_cols=40  Identities=15%  Similarity=0.024  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ...+|.++..+++++.|..+|.+||+++|.+.++...|-.
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  380 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW  380 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3445777777777777777777777777777777665543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=87.47  E-value=0.75  Score=46.03  Aligned_cols=56  Identities=20%  Similarity=0.183  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHhc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSS   94 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~s   94 (140)
                      .-+-|+| |.+|.-..+..||+.||..|..+|+.-+||-..+++..-  ..++|+...+
T Consensus       492 apaf~~L-G~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtya--e~~~we~a~~  547 (1238)
T KOG1127|consen  492 APAFAFL-GQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYA--EESTWEEAFE  547 (1238)
T ss_pred             hHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh--ccccHHHHHH
Confidence            3455888 999999999999999999999999999999999998664  3344554443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=87.25  E-value=0.3  Score=44.73  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL   74 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAF   74 (140)
                      -+|||+|+--.+|-++|...|.+||++||.|+++=
T Consensus       206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk  240 (486)
T KOG0550|consen  206 LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK  240 (486)
T ss_pred             HHhcccccccccchHHHHHHHhhhhccChhhhhHH
Confidence            58999999999999999999999999999999874

>PLN02789 farnesyltranstransferase

Probab=87.25  E-value=2.5  Score=36.12  Aligned_cols=61  Identities=13%  Similarity=0.198  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHH--HHccCCC--HHHHHHHH-hcCCCC
Q 032443           38 AICFLRGKAYEALG-NCAQARLWYKAAIIADPLCYEALECL--IENHMLT--CEQETSLL-SSLEFG   98 (140)
Q Consensus        38 smc~LRGk~yeal~-N~~~A~~~YkeAL~~Dv~CyEAFe~L--v~~~lLt--~~EE~eLl-~sL~f~   98 (140)
                      ....-||.+..+++ +...|..++.+++..+|++|.++...  +-..|=.  .++|.+++ ..|..+
T Consensus        72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d  138 (320)
T PLN02789         72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD  138 (320)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC
Confidence            34566788888887 46788888888888888888887622  2222211  14566666 344444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=87.07  E-value=0.74  Score=39.16  Aligned_cols=41  Identities=29%  Similarity=0.222  Sum_probs=37.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC
Q 032443           44 GKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT   84 (140)
Q Consensus        44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt   84 (140)
                      |.|...+|.+++|++.|+.||.+||..-.++..|...|+.-
T Consensus       146 G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~  186 (250)
T COG3063         146 GLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA  186 (250)
T ss_pred             HHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc
Confidence            78888999999999999999999999999999999888753

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=87.03  E-value=2  Score=42.20  Aligned_cols=85  Identities=12%  Similarity=-0.117  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHH---HHHhcCCCCchhHHHHHHHHH
Q 032443           34 NISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQET---SLLSSLEFGFEDGWLSSFYSC  110 (140)
Q Consensus        34 kl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~---eLl~sL~f~~e~~~lk~lY~s  110 (140)
                      .+.+--.|++|+.+..-||.+.|...|+.||.+||..-++.-.|.+-+|-....+.   .+-..+..+|++.|...+. .
T Consensus        41 ~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a  119 (987)
T PRK09782         41 HFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-A  119 (987)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-H
Confidence            36788899999999999999999999999999999999999999887776544332   2335777888887777764 6


Q ss_pred             hhhccCCCc
Q 032443          111 LIKKCRRYP  119 (140)
Q Consensus       111 rL~Ky~~~~  119 (140)
                      .+++|.+..
T Consensus       120 ~i~~~~kA~  128 (987)
T PRK09782        120 AIPVEVKSV  128 (987)
T ss_pred             HhccChhHH
Confidence            666666543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=86.73  E-value=1.1  Score=43.49  Aligned_cols=35  Identities=29%  Similarity=0.185  Sum_probs=32.6

Q ss_pred             HHHHHHcCCHHHHHH--HHHHHHhcCCCcHHHHHHHH
Q 032443           44 GKAYEALGNCAQARL--WYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        44 Gk~yeal~N~~~A~~--~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      |+++...|+...|..  ..++||++||.|.||+..|=
T Consensus       725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG  761 (799)
T KOG4162|consen  725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG  761 (799)
T ss_pred             HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            889999999999999  99999999999999998875

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=86.20  E-value=0.9  Score=43.69  Aligned_cols=40  Identities=28%  Similarity=0.277  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      -.|..|++|.+|-|.+.|.+.|++|++.|++|-|-=+.|.
T Consensus       678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~  717 (886)
T KOG4507|consen  678 TFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLK  717 (886)
T ss_pred             HHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHH
Confidence            3677899999999999999999999999999988766554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=86.16  E-value=2.4  Score=31.76  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCY   71 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy   71 (140)
                      .+-..+.+|.+|..+++++.|..+|++|+.+++...
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~   69 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN   69 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc
Confidence            455678889999999999999999999999887654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=86.03  E-value=2.2  Score=37.19  Aligned_cols=42  Identities=26%  Similarity=0.347  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ..++..|.+|..+++.++|..+|.+|+..+|....+...|..
T Consensus       466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~  507 (899)
T TIGR02917       466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR  507 (899)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            456778999999999999999999999999998887766554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=85.82  E-value=2.4  Score=28.24  Aligned_cols=38  Identities=18%  Similarity=0.130  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALEC   76 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~   76 (140)
                      .-+..|.+|..+++.+.|..+|.+++...|..-.+-++
T Consensus        78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            35677999999999999999999999999987665544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN02789 farnesyltranstransferase

Probab=85.56  E-value=1.3  Score=37.82  Aligned_cols=61  Identities=11%  Similarity=0.009  Sum_probs=45.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH--HccC--C-----CHHHHHHHH-hcCCCCchh
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI--ENHM--L-----TCEQETSLL-SSLEFGFED  101 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv--~~~l--L-----t~~EE~eLl-~sL~f~~e~  101 (140)
                      .=||-++..+++.+.|.++|..+|+.||.++.|+....  -.+|  |     ..++|.+++ +.+...|++
T Consensus       146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N  216 (320)
T PLN02789        146 SHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRN  216 (320)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCC
Confidence            44899999999999999999999999999999987652  2222  1     124677776 667666644

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=85.44  E-value=1.9  Score=37.21  Aligned_cols=60  Identities=30%  Similarity=0.289  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH------ccCCCHHHHHHHHhcCCCCc
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE------NHMLTCEQETSLLSSLEFGF   99 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~------~~lLt~~EE~eLl~sL~f~~   99 (140)
                      -.+-|++|..+|+++-|...|..|+++++.+-|.+-.+-+      .+-+|++-+.-|=+-|.-++
T Consensus       159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~  224 (287)
T COG4235         159 WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP  224 (287)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence            3455999999999999999999999999999998866643      45566655555545555544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=85.29  E-value=3.5  Score=40.36  Aligned_cols=57  Identities=23%  Similarity=0.213  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC-CCHHHHHHHHhcCC
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM-LTCEQETSLLSSLE   96 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l-Lt~~EE~eLl~sL~   96 (140)
                      .+..|.+|.++++++.|..+|.+||+++|.+.+|...|..-+. ..+++-..+++.|+
T Consensus       388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~  445 (1157)
T PRK11447        388 VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLS  445 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence            3455999999999999999999999999999999877755332 24555555665554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=85.28  E-value=1  Score=44.60  Aligned_cols=41  Identities=32%  Similarity=0.424  Sum_probs=35.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC
Q 032443           44 GKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT   84 (140)
Q Consensus        44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt   84 (140)
                      |-||..|++.+.|+-.|..||.+||+|..|.-.|-.--+..
T Consensus       206 g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~  246 (1018)
T KOG2002|consen  206 GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF  246 (1018)
T ss_pred             hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc
Confidence            77888999999999999999999999999999886544433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=84.98  E-value=2  Score=27.19  Aligned_cols=34  Identities=18%  Similarity=-0.013  Sum_probs=30.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           44 GKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      ..+|...++++.|..++..++.++|....++..+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~   35 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQR   35 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHH
Confidence            4688999999999999999999999988887544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=84.79  E-value=2.1  Score=26.69  Aligned_cols=49  Identities=20%  Similarity=0.129  Sum_probs=37.0

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCH--HHHHHHHhcCC
Q 032443           48 EALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTC--EQETSLLSSLE   96 (140)
Q Consensus        48 eal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~--~EE~eLl~sL~   96 (140)
                      ...++++.|...|+.++..+|.+-++.-.|..-.+-+.  ++=..++.++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35789999999999999999999999888776655443  33444555443

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=83.67  E-value=2.9  Score=38.30  Aligned_cols=35  Identities=20%  Similarity=0.108  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEA   73 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEA   73 (140)
                      .++=+|.+|..+++++.|..+|..||.++|...||
T Consensus        77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA  111 (453)
T PLN03098         77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA  111 (453)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Confidence            34445888888888888888888888888876654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=83.55  E-value=1.9  Score=40.18  Aligned_cols=43  Identities=23%  Similarity=0.227  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      |+=+|.|+.++-++++|.++|.+||..||.|-|+-+.+..-.+
T Consensus       429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            4456999999999999999999999999999998877665443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=83.27  E-value=3.7  Score=33.56  Aligned_cols=45  Identities=18%  Similarity=0.092  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      .+.+..|.+|..++++++|..+|.+++..++....++..|..-..
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  152 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ  152 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            455666999999999999999999999999998888887765443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=83.06  E-value=1.2  Score=42.18  Aligned_cols=75  Identities=21%  Similarity=0.170  Sum_probs=50.3

Q ss_pred             chhccCCCCCCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH--HHHHHccCCCHHHHHHHHhcCC
Q 032443           20 NVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL--ECLIENHMLTCEQETSLLSSLE   96 (140)
Q Consensus        20 ~~~~~~~~~~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAF--e~Lv~~~lLt~~EE~eLl~sL~   96 (140)
                      +...+.+.-+-...+ ..-||++ |+++.+++..++|.+.|.+|+.+||+.-=.-  ...|-..|=.-+|+...|+.|.
T Consensus       508 Ae~~fqkA~~INP~n-svi~~~~-g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk  584 (638)
T KOG1126|consen  508 AEFHFQKAVEINPSN-SVILCHI-GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELK  584 (638)
T ss_pred             HHHHHHhhhcCCccc-hhHHhhh-hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            333444443334443 4568999 9999999999999999999999999974321  1233334445566666666554

>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A

Probab=82.85  E-value=5.7  Score=37.00  Aligned_cols=76  Identities=24%  Similarity=0.207  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHh----cCCCCchhHHHHHHHHHhh
Q 032443           39 ICFLRGKAYEALG--NCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLS----SLEFGFEDGWLSSFYSCLI  112 (140)
Q Consensus        39 mc~LRGk~yeal~--N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~----sL~f~~e~~~lk~lY~srL  112 (140)
                      .--+|+++.+..|  +.+.=..||.+++++||.|--..+.|+..|-. .....+|++    +|+..+.......+=+..+
T Consensus       344 pi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~-~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l  422 (547)
T PF14929_consen  344 PIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK-DYSAEQLLEMIALHLDLVPSHPIWLEFVSCFL  422 (547)
T ss_pred             hHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh-HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Confidence            3568889999988  89999999999999999999999999999988 777777776    5555555555555555555


Q ss_pred             hcc
Q 032443          113 KKC  115 (140)
Q Consensus       113 ~Ky  115 (140)
                      +..
T Consensus       423 ~~~  425 (547)
T PF14929_consen  423 KNP  425 (547)
T ss_pred             hcc
Confidence            533

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=82.48  E-value=3.7  Score=26.98  Aligned_cols=29  Identities=24%  Similarity=0.218  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAII   65 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~   65 (140)
                      |.-+.-+|.-++..|+...|.++|++|+.
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45566789999999999999999999985

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=82.44  E-value=2.9  Score=39.01  Aligned_cols=43  Identities=28%  Similarity=0.253  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      -|----|.||+++++...|+.|||.|+...=...-|+-.|-+-
T Consensus       433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL  475 (559)
T KOG1155|consen  433 RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL  475 (559)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            3444459999999999999999999999877777776666543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.40  E-value=1.8  Score=36.32  Aligned_cols=71  Identities=17%  Similarity=0.077  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC-HH--HHHHHHhcCC-CCchhHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT-CE--QETSLLSSLE-FGFEDGWLSSFY  108 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt-~~--EE~eLl~sL~-f~~e~~~lk~lY  108 (140)
                      .+....+.|+..+++++.|.....+||..||++.+++--||--..++ ..  +-.++++.|. ..|+-.|++.+-
T Consensus       202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~  276 (290)
T PF04733_consen  202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA  276 (290)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence            44556678999999999999999999999999999988877654433 22  3556787776 445556666653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.26  E-value=2.6  Score=35.00  Aligned_cols=40  Identities=28%  Similarity=0.298  Sum_probs=34.3

Q ss_pred             CCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 032443           29 EDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADP   68 (140)
Q Consensus        29 ~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv   68 (140)
                      ++.+-...|-..-|||-++.+.|++..|+..|..||..++
T Consensus       151 t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~  190 (207)
T COG2976         151 TIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA  190 (207)
T ss_pred             ccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence            3445556777899999999999999999999999999873

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=82.22  E-value=2  Score=42.14  Aligned_cols=45  Identities=20%  Similarity=0.286  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      +.+.+..|+||-.++..+.|++||..+|..+|.|.+|--.|-+-+
T Consensus       449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~  493 (895)
T KOG2076|consen  449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLY  493 (895)
T ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHH
Confidence            556788999999999999999999999999999999987775533

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=81.97  E-value=2.1  Score=36.96  Aligned_cols=44  Identities=30%  Similarity=0.361  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           34 NISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        34 kl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      ...|+|.|=||..|..+|=+..|+.-|.+||.+-|+--++|+-|
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyL  105 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL  105 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHH
Confidence            35899999999999999999999999999999999998888876

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=81.86  E-value=6.1  Score=33.70  Aligned_cols=47  Identities=23%  Similarity=0.179  Sum_probs=37.2

Q ss_pred             CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           31 GEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        31 ~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      -++...+-.-.=+|.-|...+|..+|+....+||++||..|.|.-.+
T Consensus        29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~   75 (250)
T COG3063          29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVR   75 (250)
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            44555555556668888899999999999999999999999886544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=81.85  E-value=2.3  Score=33.61  Aligned_cols=29  Identities=24%  Similarity=0.073  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIA   66 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~   66 (140)
                      .+.+++ |.||.+++|++.|+.+|+.|+..
T Consensus       104 ~~~~~a-g~c~L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        104 QAPWAA-AECYLACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             hHHHHH-HHHHHHcCCHHHHHHHHHHHHHH
Confidence            345666 99999999999999999999986

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=81.42  E-value=6.6  Score=28.29  Aligned_cols=44  Identities=20%  Similarity=0.167  Sum_probs=35.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHH
Q 032443           43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE   86 (140)
Q Consensus        43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~   86 (140)
                      .+.++...++.+.|..++..++.+||+.-++...|+.-+.-+..
T Consensus        68 l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~  111 (146)
T PF03704_consen   68 LAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGR  111 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC
Confidence            46678899999999999999999999999999999977665543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=81.05  E-value=8.3  Score=28.59  Aligned_cols=42  Identities=21%  Similarity=0.235  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ..+-.|.+|..+++.+.|..+|..||.++|...+++..|-.-
T Consensus        74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i  115 (168)
T CHL00033         74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            445559999999999999999999999999999887666433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.75  E-value=2.2  Score=41.49  Aligned_cols=41  Identities=27%  Similarity=0.270  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      -||.-| |-||--++.++.|...|+.||.+-|.|-+|++-|-
T Consensus       355 dam~NL-gni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa  395 (966)
T KOG4626|consen  355 DAMNNL-GNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLA  395 (966)
T ss_pred             HHHHHH-HHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHH
Confidence            356666 88999999999999999999999999999998774

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=80.40  E-value=4.1  Score=39.91  Aligned_cols=42  Identities=26%  Similarity=0.211  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ..+..|.+|..+++.+.|..+|++|+..+|.+.+|...|..-
T Consensus       605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~  646 (1157)
T PRK11447        605 IDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEV  646 (1157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            456679999999999999999999999999999998877653

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=80.30  E-value=2.2  Score=38.30  Aligned_cols=46  Identities=26%  Similarity=0.287  Sum_probs=37.0

Q ss_pred             CCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443           29 EDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE   75 (140)
Q Consensus        29 ~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe   75 (140)
                      .+.++.|.=--|=| ...+.+-+|.++|+++.+.||..||+|.-|=-
T Consensus       173 q~~~~eIAqfyCEL-Aq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi  218 (389)
T COG2956         173 QTYRVEIAQFYCEL-AQQALASSDVDRARELLKKALQADKKCVRASI  218 (389)
T ss_pred             ccchhHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHhhCccceehhh
Confidence            44566655555555 89999999999999999999999999987643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	140
2xpi_A	597	Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1		6e-11

>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1 Length = 597

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Query: 15  DTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL 74
           D K+ N + +    +DG I + +++C+LRG+ Y  L N  +A+  YK A++ D  CYEA 
Sbjct: 182 DEKNANKLLM----QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237
Query: 75  ECLIENHMLTCEQETSLLSSLEFGF---ED-GWLSSFYSCLIKKC 115
           + L+ NH+LT ++E  L+  L +     ED  +L S Y   + K 
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-15

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 69.1 bits (169), Expect = 6e-15
 Identities = 29/86 (33%), Positives = 49/86 (56%)

Query: 29  EDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQE 88
           +DG I + +++C+LRG+ Y  L N  +A+  YK A++ D  CYEA + L+ NH+LT ++E
Sbjct: 192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251

Query: 89  TSLLSSLEFGFEDGWLSSFYSCLIKK 114
             L+  L +       ++F   L   
Sbjct: 252 WDLVLKLNYSTYSKEDAAFLRSLYML 277

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.9
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.6
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.49
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.13
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.06
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.99
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.95
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.85
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.83
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	96.75
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.75
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.74
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.72
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.72
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.72
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.69
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.67
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.65
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.61
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.49
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.44
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.43
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.42
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.39
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.33
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.32
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.3
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	96.27
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.26
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	96.21
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.19
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.19
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.18
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.17
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	96.05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	95.94
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.94
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	95.8
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	95.79
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.78
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	95.76
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	95.75
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	95.75
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	95.72
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.7
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	95.68
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	95.67
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	95.67
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.67
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	95.66
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	95.64
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.63
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.61
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	95.6
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	95.58
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	95.56
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	95.55
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.54
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.53
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	95.47
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	95.41
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.37
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	95.34
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	95.29
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	95.24
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	95.16
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	95.08
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	95.04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	94.99
3u4t_A	272	TPR repeat-containing protein; structural genomics	94.95
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	94.89
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	94.88
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	94.79
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.79
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	94.74
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	94.71
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	94.62
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	94.62
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	94.58
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	94.56
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.51
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	94.51
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	94.41
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	94.4
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	94.4
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	94.38
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	94.35
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	94.3
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	94.24
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	94.19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	94.13
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	94.07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	94.04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	94.02
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	94.0
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	93.96
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	93.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	93.89
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.89
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	93.87
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	93.69
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	93.67
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	93.58
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	93.42
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	93.4
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	93.4
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	93.35
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	93.2
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	93.18
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	93.17
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	93.16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	93.16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	93.16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	93.15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	93.12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	93.12
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	93.11
3k9i_A	117	BH0479 protein; putative protein binding protein,	93.1
2kat_A	115	Uncharacterized protein; NESG, structure, structur	93.09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	92.98
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	92.97
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	92.88
2gw1_A	514	Mitochondrial precursor proteins import receptor;	92.77
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	92.77
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	92.68
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	92.63
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	92.17
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	91.7
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	91.6
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	91.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	91.5
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	91.31
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	91.31
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	91.09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	91.07
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	90.92
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	90.9
4g1t_A	472	Interferon-induced protein with tetratricopeptide	90.82
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	90.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	90.65
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	90.39
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	90.08
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	89.95
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	89.88
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	89.24
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	89.19
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	89.11
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	88.86
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	88.7
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	88.63
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	88.51
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	88.26
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	88.17
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	87.99
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	87.8
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	87.39
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	87.28
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	87.1
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	86.77
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	86.55
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	86.51
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	86.42
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	86.41
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	86.29
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	86.16
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	86.11
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	85.52
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	85.24
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	85.03
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	84.06
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	83.74
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	83.68
1klx_A	138	Cysteine rich protein B; structural genomics, heli	83.29
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	83.18
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	83.05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	82.95
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	82.65
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	82.29
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	81.84
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	81.01
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	80.99
1klx_A	138	Cysteine rich protein B; structural genomics, heli	80.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	80.55

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.90  E-value=6.9e-05  Score=61.09  Aligned_cols=95  Identities=33%  Similarity=0.628  Sum_probs=82.0

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHhcCCCCc----hhHH
Q 032443           28 GEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGF----EDGW  103 (140)
Q Consensus        28 ~~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~sL~f~~----e~~~  103 (140)
                      ..+.|+...+..++.+|.+|..+++.+.|..+|+++++.+|.+.+++..|...++.+..++++++..+.|..    ...+
T Consensus       191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  270 (597)
T 2xpi_A          191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF  270 (597)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence            345567778889999999999999999999999999999999999999999999999999999999998863    4567


Q ss_pred             HHHHHHHhhhccCCCcchh
Q 032443          104 LSSFYSCLIKKCRRYPFSG  122 (140)
Q Consensus       104 lk~lY~srL~Ky~~~~~~~  122 (140)
                      ...+|...+.-|.....++
T Consensus       271 ~~~~~~~~~~~~~~~g~~~  289 (597)
T 2xpi_A          271 LRSLYMLKLNKTSHEDELR  289 (597)
T ss_dssp             HHHHHHTTSCTTTTHHHHH
T ss_pred             HHHHHHHHHHHHcCcchHH
Confidence            7888888877776654433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.60  E-value=0.00013  Score=51.05  Aligned_cols=44  Identities=27%  Similarity=0.223  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      +++++-.|.+|..+|++++|..+|.+||++||.+.+|+..|-.-
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   48 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKT   48 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            67788889999999999999999999999999999999887554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.49  E-value=0.00024  Score=48.98  Aligned_cols=42  Identities=12%  Similarity=-0.065  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      +...+.+|.||..+++++.|..+|..||.+||.+.+|+-.|-
T Consensus        47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg   88 (126)
T 4gco_A           47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA   88 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            345556677777777777777777777777777777766553

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.13  E-value=0.0011  Score=45.69  Aligned_cols=41  Identities=20%  Similarity=0.116  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      -...-+|.+|-..++++.|.++|.+||.+||...+++..+-
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~   54 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRA   54 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHh
Confidence            34456777777777777777777777777777777776553

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.06  E-value=0.0013  Score=46.12  Aligned_cols=40  Identities=18%  Similarity=-0.007  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      .|..|++|..++++++|.++|.+||.+||.+.+|+..|-.
T Consensus        34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~   73 (150)
T 4ga2_A           34 GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGL   73 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4445666666666666666666666666666666655543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.99  E-value=0.0014  Score=46.07  Aligned_cols=43  Identities=19%  Similarity=0.180  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +...+.+|.+|..++++++|..+|+.||.+||...+++..|-.
T Consensus        65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  107 (150)
T 4ga2_A           65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE  107 (150)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3456778999999999999999999999999999999987753

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.95  E-value=0.002  Score=40.77  Aligned_cols=36  Identities=31%  Similarity=0.402  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL   74 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAF   74 (140)
                      ..+.+|.+|..+++++.|..+|..|+.+||.+.+++
T Consensus        37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A           37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            567779999999999999999999999999888876

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.85  E-value=0.0036  Score=38.31  Aligned_cols=43  Identities=28%  Similarity=0.310  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +..++..|.+|..++++++|..+|.+|+..+|...+++..|-.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~   51 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN   51 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            4456666788888888888888888888888777777665543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.0031  Score=41.58  Aligned_cols=43  Identities=21%  Similarity=-0.011  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +...+.+|.+|..+++++.|..+|..|+.+||.+.+++-.|-.
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A           38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            3556777888888888888888888888888888888766554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=96.75  E-value=0.0043  Score=45.37  Aligned_cols=45  Identities=31%  Similarity=0.346  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +.+.+++-+|.+|..++++++|..+|.+||.+||.+.+++-.|-.
T Consensus        52 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   96 (208)
T 3urz_A           52 ISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE   96 (208)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            345555556777777777777777777777777777777665543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.75  E-value=0.0052  Score=37.53  Aligned_cols=41  Identities=29%  Similarity=0.333  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ...+.+|.+|..++++++|..+|.+|+.++|...++...|-
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~   84 (91)
T 1na3_A           44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            45677899999999999999999999999999998877654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.74  E-value=0.0035  Score=43.55  Aligned_cols=40  Identities=20%  Similarity=0.295  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ..+.+|.+|..++++++|.++|++|+++||.+.+++..|-
T Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg  148 (184)
T 3vtx_A          109 AYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIG  148 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHH
Confidence            4566799999999999999999999999999988887664

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.72  E-value=0.0039  Score=43.16  Aligned_cols=66  Identities=11%  Similarity=0.015  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC--HHHHHH-HHhcCCCCchh
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT--CEQETS-LLSSLEFGFED  101 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt--~~EE~e-Ll~sL~f~~e~  101 (140)
                      .+.+++-+|.||..+++++.|..+|..||.+||.+..|+-.+-.-++-.  .++-.. +-..|...|.+
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  130 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA  130 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence            5667788899999999999999999999999999999987765544332  222222 33456666654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.72  E-value=0.0034  Score=43.46  Aligned_cols=40  Identities=20%  Similarity=0.037  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      ...+.+|.+|..+++++.|..+|..||.+||..-++....
T Consensus        98 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~  137 (162)
T 3rkv_A           98 KALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVARE  137 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            3467889999999999999999999999999998665443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.0047  Score=38.98  Aligned_cols=44  Identities=16%  Similarity=-0.006  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      +..++.+|.+|..++++++|..+|.+|+.++|.+.+++..|-.-
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   47 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMA   47 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            44567779999999999999999999999999998888766543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.69  E-value=0.0043  Score=42.14  Aligned_cols=37  Identities=30%  Similarity=0.293  Sum_probs=21.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      +.+|.++...++++.|..+|+.||..||.+.+++-.|
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l   57 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL   57 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            4455555556666666666666666666665555444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.67  E-value=0.0038  Score=40.84  Aligned_cols=43  Identities=12%  Similarity=0.025  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ...+..|.+|..+++++.|..+|..|+.+||...+++..|-.-
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~   50 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKL   50 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            4566779999999999999999999999999999988776543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.65  E-value=0.0045  Score=42.89  Aligned_cols=45  Identities=24%  Similarity=0.127  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      +...+.+|.+|..+++++.|..+|..||.+||.+.+++..|-.-+
T Consensus        45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            345667788888888888888888888888888888877665443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.0062  Score=38.41  Aligned_cols=34  Identities=15%  Similarity=0.018  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLC   70 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C   70 (140)
                      +...+.+|.+|..+++++.|..+|..||.++|..
T Consensus        38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A           38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            3456778999999999999999999999999998

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.49  E-value=0.0076  Score=39.57  Aligned_cols=40  Identities=20%  Similarity=-0.017  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ..+.+|.+|..+++++.|..+|..|+.++|.+.+++..|-
T Consensus        45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B           45 YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            4555566666666666666666666666666666655544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.44  E-value=0.01  Score=36.74  Aligned_cols=41  Identities=17%  Similarity=0.109  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPL--CYEALECLIE   79 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~--CyEAFe~Lv~   79 (140)
                      .++.+|.+|..++++++|..+|.+|+..+|.  ..+++..|-.
T Consensus        42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A           42 YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            3455677777777777777777777777777  6666655543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.0094  Score=39.21  Aligned_cols=47  Identities=17%  Similarity=0.078  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      .|...+.+|.+|...++++.|..+|.+|+.++|.+.+++..+-.-++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~   49 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA   49 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            45567889999999999999999999999999999999877765443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.42  E-value=0.0098  Score=38.98  Aligned_cols=45  Identities=18%  Similarity=-0.033  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      .+..++.+|.+|..++++++|..+|..|+.++|...+++..+-.-
T Consensus        64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~  108 (148)
T 2dba_A           64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA  108 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence            367778889999999999999999999999999998887665443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.39  E-value=0.0096  Score=38.81  Aligned_cols=42  Identities=26%  Similarity=0.227  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ...+..|.+|..+++++.|..+|+.|+.++|...+++..|-.
T Consensus        20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   61 (115)
T 2kat_A           20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK   61 (115)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            456777999999999999999999999999999998876643

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.33  E-value=0.014  Score=36.30  Aligned_cols=66  Identities=12%  Similarity=0.019  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC--CHHHHHHHH-hcCCCCchhH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML--TCEQETSLL-SSLEFGFEDG  102 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL--t~~EE~eLl-~sL~f~~e~~  102 (140)
                      ....+.+|.+|..+++.+.|..+|.+|+..+|...+++..+..-.+-  ..++-.+.+ ..+...+...
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  106 (118)
T 1elw_A           38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP  106 (118)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence            34567779999999999999999999999999998887766544332  233333333 3566665443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.32  E-value=0.014  Score=36.86  Aligned_cols=45  Identities=29%  Similarity=0.200  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      +..++.+|.+|..+++++.|..+|..|+..+|...+++..|-.-+
T Consensus        46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            345677799999999999999999999999999888877665443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.30  E-value=0.011  Score=38.95  Aligned_cols=44  Identities=11%  Similarity=0.047  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      .+...+..|.+|..+++++.|..+|.+|+.++|...+++..|-.
T Consensus        26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   69 (117)
T 3k9i_A           26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM   69 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            34556777999999999999999999999999999998876654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=96.27  E-value=0.0088  Score=38.34  Aligned_cols=45  Identities=13%  Similarity=0.036  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      +...+.+|.+|..++++++|..+|.+|+..+|...+++..|-.-.
T Consensus        50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            445677799999999999999999999999999988887765543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.26  E-value=0.0098  Score=43.14  Aligned_cols=43  Identities=16%  Similarity=0.063  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +..++..|.+|..++++++|.++|.+|+.+||.+-+|.+.|..
T Consensus       221 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~  263 (272)
T 3u4t_A          221 IEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKM  263 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhh
Confidence            3456667999999999999999999999999999999988754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=96.21  E-value=0.01  Score=42.39  Aligned_cols=46  Identities=13%  Similarity=-0.043  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      .+.+.+.+|.+|..+++++.|..+|..|+.++|.+..++-.+-.-+
T Consensus        87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  132 (198)
T 2fbn_A           87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVAN  132 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4567788899999999999999999999999999998887765433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.19  E-value=0.01  Score=40.52  Aligned_cols=37  Identities=19%  Similarity=-0.015  Sum_probs=20.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      +.+|.+|..+++++.|..+|..|+.+||...+++-.|
T Consensus        56 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           56 LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            3445555555555555555555555555555554433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.19  E-value=0.0082  Score=43.39  Aligned_cols=39  Identities=13%  Similarity=0.142  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      ..+-+|.+|..+++++.|..+|..|+.+||.+.+++..|
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~l   76 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL   76 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            345557777777777777777777777777777766554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.18  E-value=0.013  Score=40.48  Aligned_cols=47  Identities=19%  Similarity=-0.007  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      .+...+.+|.+|...+++++|..+|.+||.++|.+.+++..|-.-++
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   56 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS   56 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH
Confidence            56678888999999999999999999999999999999887765443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.17  E-value=0.015  Score=38.13  Aligned_cols=46  Identities=15%  Similarity=0.013  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      +...+..|.+|..+++++.|..+|..|+..+|.+.+++..|-.-.+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~   54 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL   54 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH
Confidence            4567788999999999999999999999999999999887765444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.07  E-value=0.017  Score=39.30  Aligned_cols=42  Identities=24%  Similarity=0.159  Sum_probs=33.6

Q ss_pred             HHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           36 SSAICF-LRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        36 ~ssmc~-LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      ++++.+ -.|.+|-..+++++|.++|.+||.+||...+++.-|
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nl   48 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNK   48 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhH
Confidence            344443 359999999999999999999999999998887654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.06  E-value=0.012  Score=41.27  Aligned_cols=37  Identities=16%  Similarity=-0.000  Sum_probs=21.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      +.+|.+|..+++++.|..+|..|+.+||...+++-.|
T Consensus        59 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   95 (148)
T 2vgx_A           59 LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA   95 (148)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            3446666666666666666666666666655555444

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=96.05  E-value=0.013  Score=42.71  Aligned_cols=47  Identities=15%  Similarity=-0.061  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT   84 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt   84 (140)
                      ...+.+|.+|..+++.+.|..+|.+||.+||.+.+|+..|-.-....
T Consensus        89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           89 DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT  135 (208)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            44667799999999999999999999999999999998886654433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.04  E-value=0.013  Score=39.66  Aligned_cols=44  Identities=16%  Similarity=0.006  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      ...+.+|.+|..+++.+.|..+|+.|+.+||...+++..|-.-.
T Consensus        52 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           52 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   95 (121)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34677899999999999999999999999999999987775443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=95.94  E-value=0.023  Score=35.31  Aligned_cols=45  Identities=20%  Similarity=0.074  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      +...+..|.++...++++.|..+|..|+..+|...+++..+-.-+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   48 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAY   48 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            445667799999999999999999999999999888877665443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=95.94  E-value=0.021  Score=40.64  Aligned_cols=42  Identities=14%  Similarity=0.007  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ...+.+|.+|..+++++.|..+|++|+.++|...++...|..
T Consensus       123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  164 (198)
T 2fbn_A          123 KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  164 (198)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            346778999999999999999999999999999998877753

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=95.80  E-value=0.03  Score=35.28  Aligned_cols=47  Identities=15%  Similarity=0.017  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      .+...+..|.+|...++++.|..+|..|+..+|...+++..+..-++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   57 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS   57 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45567778999999999999999999999999999888877665543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=95.79  E-value=0.024  Score=41.96  Aligned_cols=67  Identities=10%  Similarity=-0.030  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCH--HHHHHH-HhcCCCCchh
Q 032443           35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTC--EQETSL-LSSLEFGFED  101 (140)
Q Consensus        35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~--~EE~eL-l~sL~f~~e~  101 (140)
                      +.....+.+|.+|..+++.++|..+|.+|+..+|.+.+++..+-.-.+-..  ++-.+. -..+...|+.
T Consensus       270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~  339 (359)
T 3ieg_A          270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND  339 (359)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            344556667999999999999999999999999988888877665544322  222222 2355555544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.78  E-value=0.021  Score=36.52  Aligned_cols=49  Identities=16%  Similarity=0.055  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT   84 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt   84 (140)
                      ...-++.+|.+|...++++.|..+|.+|+..+|.+.+++..|-.-.+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~   63 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL   63 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence            3444566699999999999999999999999999999998887765544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=95.76  E-value=0.027  Score=37.53  Aligned_cols=43  Identities=16%  Similarity=-0.151  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +...+.+|.+|..+++++.|..+|.+|+.++|...+++-.+-.
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~   89 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3445666777777777777777777777777777777655543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=95.75  E-value=0.033  Score=34.78  Aligned_cols=44  Identities=27%  Similarity=0.276  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      ..++..|.+|..+++++.|..+|.+++..+|...+++..|..-+
T Consensus        44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A           44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            45666799999999999999999999999998888876665433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=95.75  E-value=0.025  Score=39.85  Aligned_cols=44  Identities=27%  Similarity=0.163  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      +..++.+|.+|..++++++|..+|.+|+.++|.+.+++..|-.-
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~   80 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            45778889999999999999999999999999999888765543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.72  E-value=0.038  Score=36.09  Aligned_cols=45  Identities=16%  Similarity=-0.056  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLC---YEALECLIEN   80 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C---yEAFe~Lv~~   80 (140)
                      .+...+.+|.+|...++++.|..+|.+|+..+|..   ..++..|-.-
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~   74 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAAC   74 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            34567788999999999999999999999999998   6666655543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.70  E-value=0.023  Score=35.68  Aligned_cols=39  Identities=13%  Similarity=0.051  Sum_probs=34.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHHHHHH
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYE-ALECLIE   79 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE-AFe~Lv~   79 (140)
                      +-+|.+|..+++++.|..+|..|+..+|.+.+ ++..|-.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~   43 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGN   43 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            55799999999999999999999999999998 8766543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=95.68  E-value=0.038  Score=34.90  Aligned_cols=44  Identities=14%  Similarity=-0.067  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      +..++..|.+|...+++++|..+|..|+..+|.+..++..|-.-
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   47 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAV   47 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            44566678999999999999999999999998888877665543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=95.67  E-value=0.025  Score=40.64  Aligned_cols=41  Identities=12%  Similarity=0.054  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ..+.+|.+|..++++++|..+|..|+..+|...+++..|-.
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A           44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            34446777777777777777777777777777666665544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=95.67  E-value=0.022  Score=45.28  Aligned_cols=45  Identities=18%  Similarity=-0.071  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      +..++.+|.||..++++++|..+|..||.+||.+..|+-.|-.-+
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  240 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH  240 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            566677788888888888888888888888888888776664443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.67  E-value=0.039  Score=35.69  Aligned_cols=44  Identities=18%  Similarity=0.130  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLC---YEALECLIEN   80 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C---yEAFe~Lv~~   80 (140)
                      +...+..|.+|..+++++.|..+|..++..+|..   .+++-.|-.-
T Consensus        39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A           39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            3456667999999999999999999999999988   7776655443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=95.66  E-value=0.032  Score=37.16  Aligned_cols=40  Identities=15%  Similarity=0.027  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      ...+..|.+|...+++++|..+|..|+..+|.+.+++..+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   53 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNR   53 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            3344445555555555555555555555555555544433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=95.64  E-value=0.015  Score=41.89  Aligned_cols=47  Identities=21%  Similarity=0.147  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHccC
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPL--CYEALECLIENHM   82 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~--CyEAFe~Lv~~~l   82 (140)
                      .+...+.+|.+|..++++++|..+|.+|+.++|.  +.+++..|-.-++
T Consensus       116 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  164 (228)
T 4i17_A          116 YAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY  164 (228)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence            3456788899999999999999999999999999  8899887765554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.63  E-value=0.047  Score=36.44  Aligned_cols=45  Identities=22%  Similarity=0.085  Sum_probs=35.8

Q ss_pred             CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 032443           31 GEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALEC   76 (140)
Q Consensus        31 ~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~   76 (140)
                      .|+...... ..-|.||-.+|++++|...|++||+++|..-.+..-
T Consensus        41 ~~~~~~~i~-~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A           41 STIDKVSVL-DYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             CSSCHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcccHHHHH-HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            355544444 444999999999999999999999999998777443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=95.61  E-value=0.031  Score=40.30  Aligned_cols=43  Identities=14%  Similarity=-0.010  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ...+.+|.+|..+++++.|..+|..|+.+||...+++-.|-.-
T Consensus        71 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~  113 (151)
T 3gyz_A           71 DYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence            3456679999999999999999999999999999998776543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=95.60  E-value=0.036  Score=37.70  Aligned_cols=43  Identities=12%  Similarity=0.176  Sum_probs=33.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           34 NISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        34 kl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      ...+..++-+|.+|.+++++++|.++|..||..+|. .+....|
T Consensus        80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l  122 (127)
T 4gcn_A           80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV  122 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence            334556677899999999999999999999998874 4444433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=95.58  E-value=0.013  Score=48.52  Aligned_cols=36  Identities=17%  Similarity=0.238  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHH
Q 032443           39 ICFLRGKAYEALGN-CAQARLWYKAAIIADPLCYEAL   74 (140)
Q Consensus        39 mc~LRGk~yeal~N-~~~A~~~YkeAL~~Dv~CyEAF   74 (140)
                      ..+.||.+|..+++ ++.|..+|.+||.+||++++++
T Consensus       133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A          133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            33444555555553 4555555554444444444444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=95.56  E-value=0.024  Score=39.23  Aligned_cols=43  Identities=19%  Similarity=0.101  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ..++..|.+|..+++++.|..+|..|+.++|.+.+++..|-.-
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   87 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV   87 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4678889999999999999999999999999999988776544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=95.55  E-value=0.055  Score=33.70  Aligned_cols=46  Identities=26%  Similarity=0.270  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      +..++..|.+|...++++.|..+|.+|+..+|...+++..|..-.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   54 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   54 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            4567778999999999999999999999999999988877765443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.54  E-value=0.044  Score=35.43  Aligned_cols=29  Identities=10%  Similarity=-0.074  Sum_probs=15.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 032443           43 RGKAYEALGNCAQARLWYKAAIIADPLCY   71 (140)
Q Consensus        43 RGk~yeal~N~~~A~~~YkeAL~~Dv~Cy   71 (140)
                      +|.++...++++.|...|..++..+|...
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~   36 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGV   36 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSST
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCc
Confidence            35555555555555555555555555544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.53  E-value=0.013  Score=36.32  Aligned_cols=42  Identities=19%  Similarity=0.112  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      .+.+|.+|..++++++|..+|..|+..+|...+++..+-.-.
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   50 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL   50 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            456799999999999999999999999999999887665443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=95.47  E-value=0.033  Score=44.25  Aligned_cols=43  Identities=21%  Similarity=0.040  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ...+.+|.+|..+++++.|..+|++||.++|.+.++...|-.-
T Consensus       231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          231 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3467789999999999999999999999999999988777543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=95.41  E-value=0.031  Score=39.50  Aligned_cols=40  Identities=20%  Similarity=0.057  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ..+..|.+|..+++.+.|..+|.+++..+|...+++..|.
T Consensus       161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  200 (243)
T 2q7f_A          161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAG  200 (243)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            3444466666666666666666666666665555554443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.37  E-value=0.037  Score=40.52  Aligned_cols=43  Identities=16%  Similarity=0.065  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ...+.+|.+|..+++++.|..+|+.|+.+||...+++..|-.-
T Consensus        40 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~   82 (217)
T 2pl2_A           40 EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA   82 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            3456679999999999999999999999999988887766543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=95.34  E-value=0.061  Score=33.91  Aligned_cols=40  Identities=13%  Similarity=0.121  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      +...+..|.+|..+++++.|..+|..|+..++ ..++...|
T Consensus        79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l  118 (131)
T 1elr_A           79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC  118 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence            55677889999999999999999999999998 45555544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=95.29  E-value=0.043  Score=39.47  Aligned_cols=44  Identities=27%  Similarity=0.306  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      .+...+.+|.+|..++++++|..+|.+|+.++|...+++..|-.
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~   85 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI   85 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            35556667888888888888888888888888887777766554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=95.24  E-value=0.06  Score=41.84  Aligned_cols=72  Identities=15%  Similarity=0.020  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC-CCH-HHH-HHHHh-cCCCCchhHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM-LTC-EQE-TSLLS-SLEFGFEDGWLSSFYS  109 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l-Lt~-~EE-~eLl~-sL~f~~e~~~lk~lY~  109 (140)
                      .+.+-+|.+|..+++++.|..+|.+||..||...+++..|..-.. +.. .|+ .++++ -+...|+..+++.++.
T Consensus       201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~  276 (291)
T 3mkr_A          201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA  276 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            455668999999999999999999999999999999987763222 222 232 35554 4556777777777654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=95.16  E-value=0.022  Score=47.35  Aligned_cols=47  Identities=17%  Similarity=-0.000  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      .+..++-+|.||..++++++|..+|.+||.+||.+..|+-.+-.-++
T Consensus       316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~  362 (457)
T 1kt0_A          316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL  362 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            36677778999999999999999999999999999888876654433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.11  E-value=0.059  Score=37.62  Aligned_cols=43  Identities=12%  Similarity=-0.043  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +...+.+|.++..+++++.|..+|..|+.+||.+.+++..|-.
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   63 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA   63 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHH
Confidence            3345667999999999999999999999999999999877644

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=95.08  E-value=0.066  Score=36.33  Aligned_cols=45  Identities=13%  Similarity=0.005  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      +...+-+|.++...++++.|..+|..|+..||...+++..|-.-+
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   62 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACR   62 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            344566799999999999999999999999999999988765433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=95.04  E-value=0.041  Score=45.43  Aligned_cols=63  Identities=10%  Similarity=-0.043  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc--CC-CHHHHHHHHh-cCCCCc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH--ML-TCEQETSLLS-SLEFGF   99 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~--lL-t~~EE~eLl~-sL~f~~   99 (140)
                      +...+.+|.+|..+++.++|..+|.+||.++|.+++|+..+-.-.  += ..++....++ .|...+
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P  163 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP  163 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC
Confidence            445666799999999999999999999999999999976543322  22 1455555553 444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=94.99  E-value=0.044  Score=40.11  Aligned_cols=42  Identities=26%  Similarity=0.203  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ..+.+|.++..+++++.|..+|..||..||.+.+++..|-.-
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~   48 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLART   48 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            456789999999999999999999999999999999866543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=94.95  E-value=0.048  Score=39.45  Aligned_cols=46  Identities=22%  Similarity=0.059  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      +...+.+|.+|..++++++|..+|..|+..+|...+++..|-.-++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  119 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY  119 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence            4446677888888888888888888888888888888777665443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=94.89  E-value=0.055  Score=44.95  Aligned_cols=43  Identities=14%  Similarity=0.060  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ...|.||++|..+++++.|..+|+.||.+||.+.+|...|-.-
T Consensus       352 ~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3478889999999999999999999999999999988777643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=94.88  E-value=0.029  Score=46.68  Aligned_cols=43  Identities=26%  Similarity=0.300  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNC-AQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~-~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +..++.+|++|..++++ ++|..+|.+||++||.+.+++..|-.
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~  145 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGE  145 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            45677778888888887 88888888888888877777766543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=94.79  E-value=0.055  Score=44.14  Aligned_cols=46  Identities=15%  Similarity=0.002  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      .+..++-+|.+|..+++.++|..+|.+||.+||...+|+-.|-.-+
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  317 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW  317 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            4667778899999999999999999999999999999987764433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.79  E-value=0.041  Score=36.72  Aligned_cols=32  Identities=22%  Similarity=0.435  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443           35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIA   66 (140)
Q Consensus        35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~   66 (140)
                      +.+.-||--|+.+-..+++.+|+.||.+|++.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~   34 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQ   34 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHh
Confidence            45667999999999999999999999999986

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=94.74  E-value=0.079  Score=37.43  Aligned_cols=46  Identities=17%  Similarity=0.085  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      .+...+.+|.+|..+++++.|..+|.+|+..+|...+++..|..-.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  183 (258)
T 3uq3_A          138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL  183 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            3445666678888888888888888888888877777776665443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=94.71  E-value=0.09  Score=32.81  Aligned_cols=40  Identities=30%  Similarity=0.353  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ++..|.+|...++.+.|..+|.+++..+|....++..|..
T Consensus        38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   77 (136)
T 2fo7_A           38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN   77 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            4445777777777777777777777777776666655543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=94.62  E-value=0.057  Score=41.56  Aligned_cols=40  Identities=20%  Similarity=0.021  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      ...+.+|.+|..+++++.|...|.+|+.++|.+..++..|
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (281)
T 2c2l_A           39 VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   78 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4456667777777777777777777777777777666554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=94.62  E-value=0.039  Score=41.90  Aligned_cols=38  Identities=24%  Similarity=0.374  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           40 CFLRGKAYEALG-----------NCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        40 c~LRGk~yeal~-----------N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      .|-.|.+|..++           ++++|..||+.||.+||.+.++-..|
T Consensus        83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al  131 (158)
T 1zu2_A           83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL  131 (158)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            455699998874           99999999999999999986655443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=94.58  E-value=0.12  Score=34.29  Aligned_cols=42  Identities=14%  Similarity=0.087  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ..++..|.+|..++++++|..+|.+++..+|...+++..+..
T Consensus        77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  118 (186)
T 3as5_A           77 KVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV  118 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence            345556788888888888888888888888877777665544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=94.56  E-value=0.078  Score=37.46  Aligned_cols=45  Identities=20%  Similarity=0.006  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      ...+.+|.+|..+++++.|..+|.+|+..+|.+.+++..|-.-.+
T Consensus       174 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  218 (258)
T 3uq3_A          174 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI  218 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            456677999999999999999999999999999988877765443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.51  E-value=0.072  Score=40.37  Aligned_cols=38  Identities=16%  Similarity=0.202  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALEC   76 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~   76 (140)
                      ++++| |..|-+++|.++|+.++..+|+++|.|-+|-..
T Consensus        73 ~lY~L-Av~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           73 YVFYL-AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             HHHHH-HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHH-HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            45555 999999999999999999999999999988543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=94.51  E-value=0.074  Score=38.21  Aligned_cols=43  Identities=16%  Similarity=-0.002  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ...+..|.+|..+++++.|..+|.+|+.++|.+.+++..|-.-
T Consensus        78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  120 (275)
T 1xnf_A           78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  120 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHH
Confidence            3455668888888888888888888888888887777666543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=94.41  E-value=0.063  Score=42.72  Aligned_cols=64  Identities=8%  Similarity=-0.046  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCH--HHH-HHHHhcCCCCchh
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTC--EQE-TSLLSSLEFGFED  101 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~--~EE-~eLl~sL~f~~e~  101 (140)
                      ..++.+|.||..+++++.|..+|..||.+||.+..|+-.|-.-++...  ++- ..|-..|...+.+
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~  297 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD  297 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            366778999999999999999999999999999999887765544432  222 2344566666544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=94.40  E-value=0.12  Score=35.68  Aligned_cols=46  Identities=15%  Similarity=0.036  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT   84 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt   84 (140)
                      ..+..|.+|..+++.+.|..+|..|+..+|...+++..|..-.+-.
T Consensus        44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~   89 (225)
T 2vq2_A           44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR   89 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            4455677777777777777777777777777777776665544433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=94.40  E-value=0.033  Score=36.19  Aligned_cols=31  Identities=26%  Similarity=0.232  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPL   69 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~   69 (140)
                      ..+.+|.+|..+++++.|..+|++|+.+++.
T Consensus        43 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A           43 TYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            5677799999999999999999999998654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=94.38  E-value=0.15  Score=31.74  Aligned_cols=42  Identities=29%  Similarity=0.328  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      .++..|.+|..+++.++|..+|.+++..+|...+++..|..-
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  112 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA  112 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            456679999999999999999999999999988877666543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=94.35  E-value=0.095  Score=40.41  Aligned_cols=41  Identities=20%  Similarity=0.201  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ..++.+|.+|..++++++|..+|.+|+.++|...+++..|.
T Consensus        68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  108 (388)
T 1w3b_A           68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA  108 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence            35677799999999999999999999999999888776554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=94.30  E-value=0.041  Score=40.45  Aligned_cols=67  Identities=16%  Similarity=0.183  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC--CHHHHHHHH-hcCCCCchhHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML--TCEQETSLL-SSLEFGFEDGW  103 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL--t~~EE~eLl-~sL~f~~e~~~  103 (140)
                      +..++..|.+|..+++++.|..+|.+|+.++|...+++..|-.-..-  ..++-.+.+ ..+...|++..
T Consensus       236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  305 (330)
T 3hym_B          236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF  305 (330)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence            44666779999999999999999999999999999998877654432  233444444 46777765543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=94.24  E-value=0.086  Score=41.90  Aligned_cols=44  Identities=14%  Similarity=0.049  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      ...+.+|.+|..++++++|..+|.+|+.+||.+.+++..|..-+
T Consensus        60 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           60 VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            44667799999999999999999999999999888877665443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=94.19  E-value=0.027  Score=44.83  Aligned_cols=41  Identities=29%  Similarity=0.186  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ...+.+|++|..+++++.|..+|+.||+++|.+.++...|.
T Consensus       265 ~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~  305 (338)
T 2if4_A          265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELR  305 (338)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            34677899999999999999999999999999988876654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=94.13  E-value=0.11  Score=40.75  Aligned_cols=46  Identities=11%  Similarity=0.018  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      +...+.+|.+|..++++++|..+|.+|+..+|.+.+++..|..-++
T Consensus        39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A           39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            4456778999999999999999999999999999998877665443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=94.07  E-value=0.095  Score=43.53  Aligned_cols=43  Identities=14%  Similarity=0.036  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +...+.+|.+|..++++++|..+|.+|+.+||...++...|-.
T Consensus       258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~  300 (474)
T 4abn_A          258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ  300 (474)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4556778999999999999999999999999999988766543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=94.04  E-value=0.13  Score=39.11  Aligned_cols=40  Identities=30%  Similarity=0.262  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      .+.+|.+|..+++++.|..+|.+|+..+|...+++..|..
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  107 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGI  107 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            4444555555555555555555555555555555554443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=94.02  E-value=0.1  Score=42.56  Aligned_cols=43  Identities=19%  Similarity=0.128  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +...+.+|.+|..++++++|..+|++|++++|..-++...|-.
T Consensus       307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~  349 (370)
T 1ihg_A          307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3456788999999999999999999999999999888776653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=94.00  E-value=0.16  Score=35.65  Aligned_cols=34  Identities=9%  Similarity=-0.062  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLC   70 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C   70 (140)
                      +...+.+|.+|..+++.++|..+|..|+.++|..
T Consensus       121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          121 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            4566778999999999999999999999999965

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=93.96  E-value=0.19  Score=34.65  Aligned_cols=44  Identities=18%  Similarity=0.198  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      +...+..|.+|..+++.++|..+|.+++..+|...+++..|..-
T Consensus       113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  156 (225)
T 2vq2_A          113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART  156 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            44566779999999999999999999999999888877766543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=93.94  E-value=0.2  Score=33.20  Aligned_cols=44  Identities=14%  Similarity=0.128  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      +..++..|.+|..++++++|..+|.+++..+|...+++..+..-
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   85 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45567779999999999999999999999999998887766543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=93.89  E-value=0.12  Score=40.14  Aligned_cols=41  Identities=20%  Similarity=-0.051  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ...+.+|.+|..+++++.|..+|++|+.++|...++...|-
T Consensus       330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  370 (450)
T 2y4t_A          330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            34555677777777777777777777777777776666654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.89  E-value=0.14  Score=34.33  Aligned_cols=41  Identities=15%  Similarity=0.134  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           38 AICFLRGKAYEALGN---CAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        38 smc~LRGk~yeal~N---~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      .+.+.+|.++-..++   ..+|...+++||.+||.|..|.-.|=
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg   50 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIA   50 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            455666777776666   58999999999999999998876663

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=93.87  E-value=0.16  Score=38.28  Aligned_cols=41  Identities=29%  Similarity=0.283  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ..+.+|.+|..+++++.|..+|.+|+..+|...+++..|..
T Consensus        66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  106 (368)
T 1fch_A           66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGT  106 (368)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34455666666666666666666666666666666555443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=93.69  E-value=0.11  Score=46.82  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=22.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      +-+|.+|..+++++.|..+|++||++||.+.+|+..|
T Consensus        47 ~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A           47 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3346666666666666666666666666666665544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=93.67  E-value=0.15  Score=37.59  Aligned_cols=43  Identities=14%  Similarity=-0.058  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ...+.+|.+|..++++++|..+|..|+..+|...+++..|..-
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   80 (359)
T 3ieg_A           38 IAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            3566678888888888888888888888888887777666543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=93.58  E-value=0.17  Score=38.27  Aligned_cols=39  Identities=10%  Similarity=-0.158  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCcHHHH
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIA-------DPLCYEAL   74 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~-------Dv~CyEAF   74 (140)
                      .+...+=||.++..+++++.|..||..||.+       ||....|+
T Consensus        56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~  101 (159)
T 2hr2_A           56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLW  101 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHH
Confidence            4557888999999999999999999999999       99999998

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=93.42  E-value=0.18  Score=34.72  Aligned_cols=43  Identities=21%  Similarity=0.145  Sum_probs=36.2

Q ss_pred             HHHHHHHHH-HHHcCCH--HHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           38 AICFLRGKA-YEALGNC--AQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        38 smc~LRGk~-yeal~N~--~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ...+..|.+ |..+++.  +.|..+|..|+..+|.+.+++..|-.-
T Consensus        79 ~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  124 (177)
T 2e2e_A           79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASD  124 (177)
T ss_dssp             HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            356677999 8899998  999999999999999999988776543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=93.40  E-value=0.18  Score=37.90  Aligned_cols=44  Identities=18%  Similarity=0.129  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      +...+..|.+|..+++++.|..+|.+|+.++|.+.+++..|..-
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  260 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT  260 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            34455567777777777777777777777777777766655443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=93.40  E-value=0.14  Score=38.71  Aligned_cols=35  Identities=9%  Similarity=0.037  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLC   70 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C   70 (140)
                      .|...+-+|.++..+++++.|..+|..||++||.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~   44 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM   44 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC
Confidence            56778889999999999999999999999999993

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=93.35  E-value=0.25  Score=34.71  Aligned_cols=38  Identities=13%  Similarity=0.075  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      .+.+|.+|..++++++|..+|.+|+..+|...+++..|
T Consensus        60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   97 (243)
T 2q7f_A           60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGA   97 (243)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence            34445555555555555555555555555555554443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=93.20  E-value=0.21  Score=34.87  Aligned_cols=40  Identities=10%  Similarity=0.011  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLC--YEALECL   77 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C--yEAFe~L   77 (140)
                      ...+..|.+|..+++++.|..+|.++|+.+|..  .++...|
T Consensus       109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l  150 (176)
T 2r5s_A          109 ELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF  150 (176)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence            345556888888888888888888888888764  3355444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=93.18  E-value=0.095  Score=41.66  Aligned_cols=46  Identities=20%  Similarity=0.080  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      .+..++.+|.+|...+++++|..+|.+|+..||.+.+++..|-.-+
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   69 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY   69 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence            5667888999999999999999999999999999999987766543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=93.17  E-value=0.25  Score=36.06  Aligned_cols=39  Identities=15%  Similarity=-0.029  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      .+.+|.+|..+++++.|..+|..|+..+|...+++..|.
T Consensus        58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   96 (327)
T 3cv0_A           58 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   96 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence            445566677777777777777777777666666655544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=93.16  E-value=0.11  Score=45.51  Aligned_cols=37  Identities=14%  Similarity=0.048  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE   75 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe   75 (140)
                      ..+.+|.+|..+++++.|..+|.+|++.||...+|+.
T Consensus       435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  471 (681)
T 2pzi_A          435 LPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVW  471 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHH
Confidence            3444455555555555555555555555555555444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=93.16  E-value=0.2  Score=38.07  Aligned_cols=41  Identities=20%  Similarity=0.135  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ..+..|.+|..++++++|..+|.+|+.++|...+++..|..
T Consensus       215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  255 (365)
T 4eqf_A          215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGA  255 (365)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34455666666666666666666666666666666655543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=93.16  E-value=0.15  Score=39.27  Aligned_cols=41  Identities=20%  Similarity=0.051  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      .+..|.+|..+++.+.|..+|.+|+.++|.+.+++..|..-
T Consensus       308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  348 (388)
T 1w3b_A          308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV  348 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            34457888888888888888888888888877777766543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=93.15  E-value=0.13  Score=37.69  Aligned_cols=42  Identities=14%  Similarity=0.011  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ...+..|.+|..++++++|..+|.+|+.++|...++...|..
T Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  312 (330)
T 3hym_B          271 STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH  312 (330)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence            346667999999999999999999999999999999888765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=93.12  E-value=0.15  Score=36.41  Aligned_cols=42  Identities=26%  Similarity=0.291  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      +..++.+|.+|...+++++|..+|.+|+..+|...+++..|.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la   78 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALA   78 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            455566666666666666666666666666666666555543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=93.12  E-value=0.28  Score=35.02  Aligned_cols=45  Identities=11%  Similarity=-0.016  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      +...+..|.+|..+++.++|..+|.+|+..+|...+++..|..-.
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  185 (252)
T 2ho1_A          141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL  185 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            445566788888889999999999999988888888877665443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=93.11  E-value=0.15  Score=46.04  Aligned_cols=40  Identities=20%  Similarity=0.094  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      .+-+|.+|..+++.++|..+|++||++||...+|+..|..
T Consensus       114 ~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~  153 (723)
T 4gyw_A          114 HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH  153 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhh
Confidence            4455777888888888888888888888887777766653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=93.10  E-value=0.14  Score=33.52  Aligned_cols=37  Identities=14%  Similarity=-0.022  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEA   73 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEA   73 (140)
                      +...+..|.+|..+++++.|..+|++||..+|..-+.
T Consensus        61 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~   97 (117)
T 3k9i_A           61 QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI   97 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence            3455667999999999999999999999999887654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=93.09  E-value=0.084  Score=34.19  Aligned_cols=32  Identities=22%  Similarity=0.204  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLC   70 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C   70 (140)
                      ..+..|.+|..+++.+.|..+|..|+.++|..
T Consensus        55 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           55 AWKWLGKTLQGQGDRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            45667999999999999999999999998754

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=92.98  E-value=0.2  Score=40.63  Aligned_cols=44  Identities=14%  Similarity=-0.012  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      +...+..|.+|..+++.+.|..+|++++..+|...+++..|..-
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  559 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV  559 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            34455557777777777777777777777777777777666543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=92.97  E-value=0.097  Score=39.66  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           40 CFLRGKAYEALGNC----------AQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        40 c~LRGk~yeal~N~----------~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      .+..|.++..++++          +.|+.+|.+||++||...+|+-.|=.
T Consensus        39 ~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~   88 (158)
T 1zu2_A           39 LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            44468888888775          59999999999999999999876643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=92.88  E-value=0.23  Score=38.06  Aligned_cols=45  Identities=16%  Similarity=-0.007  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      +...+.+|.+|...++++.|..+|.+|+..+|...+++..|-.-+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   48 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCY   48 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            445677899999999999999999999999999999987665443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=92.77  E-value=0.22  Score=39.05  Aligned_cols=39  Identities=18%  Similarity=0.046  Sum_probs=21.2

Q ss_pred             HHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           40 CFLRGKAYEA---LGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        40 c~LRGk~yea---l~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      .+.+|.+|..   +++++.|..+|..|+..+|.+.+++..|.
T Consensus       415 ~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  456 (514)
T 2gw1_A          415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA  456 (514)
T ss_dssp             HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            3444555555   55555555555555555555555544443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=92.77  E-value=0.21  Score=41.96  Aligned_cols=42  Identities=17%  Similarity=-0.155  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      +...+.+|.+|..+++.+.|..+|.+|+++||...+++..|-
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   81 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   81 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            445666788888888888888888888888888777766553

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=92.68  E-value=0.33  Score=35.45  Aligned_cols=44  Identities=16%  Similarity=0.018  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      ...+..|.+|..+++++.|..+|.+|+..+|.+.+++..+..-.
T Consensus       173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  216 (327)
T 3cv0_A          173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL  216 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            44566688888888888888888888888888888776665433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=92.63  E-value=0.29  Score=37.96  Aligned_cols=42  Identities=14%  Similarity=-0.044  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ...+.+|.+|..+++.+.|..+|.+|+..+|.+.+++..|..
T Consensus        61 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  102 (450)
T 2y4t_A           61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            344555667777777777777777777777666666655543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=92.17  E-value=0.28  Score=40.89  Aligned_cols=39  Identities=23%  Similarity=0.130  Sum_probs=20.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +..|.+|..+++.+.|.++|.+|++++|...+++..|..
T Consensus        95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  133 (568)
T 2vsy_A           95 LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN  133 (568)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            334555555555555555555555555555555544443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=91.70  E-value=0.2  Score=42.05  Aligned_cols=41  Identities=20%  Similarity=0.108  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ...+.+|.+|..++++++|..+|++||+++|...++...|-
T Consensus        75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  115 (477)
T 1wao_1           75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  115 (477)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44667799999999999999999999999999888776654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=91.60  E-value=0.41  Score=35.12  Aligned_cols=39  Identities=23%  Similarity=0.210  Sum_probs=33.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHH
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPL---CYEALECLIE   79 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~---CyEAFe~Lv~   79 (140)
                      +.+|.+|..+++++.|..+|..++..+|.   ..+|+-.|-.
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~  193 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMR  193 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence            67799999999999999999999999998   4556655543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=91.60  E-value=0.37  Score=36.80  Aligned_cols=42  Identities=7%  Similarity=0.033  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYE-ALECLIE   79 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE-AFe~Lv~   79 (140)
                      .+.+..|.+++.+++.++|...|..||+++|...+ ++..+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  142 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMK  142 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHH
Confidence            35667788999999999999999999999988876 6666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=91.50  E-value=0.22  Score=43.32  Aligned_cols=56  Identities=11%  Similarity=0.160  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCcHHHHHH--HHHccCCCH--HHHHHHHh
Q 032443           38 AICFLRGKAYEALGN----------CAQARLWYKAAIIADPLCYEALEC--LIENHMLTC--EQETSLLS   93 (140)
Q Consensus        38 smc~LRGk~yeal~N----------~~~A~~~YkeAL~~Dv~CyEAFe~--Lv~~~lLt~--~EE~eLl~   93 (140)
                      ...+-||.+..+++.          ...|.++|..||+.||+||.|+..  .+=.+|-.+  ++|.++++
T Consensus        64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~  133 (567)
T 1dce_A           64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA  133 (567)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            568889999999998          899999999999999999999863  333344433  66666664

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=91.31  E-value=0.35  Score=40.28  Aligned_cols=39  Identities=18%  Similarity=-0.048  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      .+..|.+|..+++++.|..+|.+|+.++|...+++..|-
T Consensus        60 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   98 (568)
T 2vsy_A           60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG   98 (568)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            344466666666666666666666666666655555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=91.31  E-value=0.1  Score=36.49  Aligned_cols=33  Identities=3%  Similarity=-0.088  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYE   72 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE   72 (140)
                      ..+..|.+|..+++.+.|..+|+.|+..+| ..+
T Consensus        42 a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~   74 (176)
T 2r5s_A           42 VKLAKADCLLETKQFELAQELLATIPLEYQ-DNS   74 (176)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH
Confidence            345557777777777777777777777766 443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=91.09  E-value=0.76  Score=33.07  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYE   72 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE   72 (140)
                      +.-.+++|.++...++++.|..+|.+|+..+|...+
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~   40 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK   40 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHH
Confidence            444677899999999999999999999999998753

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=91.07  E-value=0.28  Score=41.94  Aligned_cols=48  Identities=13%  Similarity=-0.012  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           34 NISSAICFLRGKAYEALGNC---AQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        34 kl~ssmc~LRGk~yeal~N~---~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      ++.|--|||||+.|....+.   .+|..+|.+|+.+||.+-.|+-.|--.+
T Consensus       193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~  243 (372)
T 3ly7_A          193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD  243 (372)
T ss_dssp             SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            46788999999999887554   8999999999999999999988654444

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=90.92  E-value=0.41  Score=34.86  Aligned_cols=36  Identities=14%  Similarity=-0.050  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEA   73 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEA   73 (140)
                      ...+.+|.+|..++++++|..+|..+++.+|....+
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~   77 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI   77 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence            355667999999999999999999999999998754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=90.90  E-value=0.53  Score=34.51  Aligned_cols=44  Identities=16%  Similarity=-0.037  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPL---CYEALECLIEN   80 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~---CyEAFe~Lv~~   80 (140)
                      +...+.+|.+|..+++++.|..+|..++..+|.   ..+|+-.|-.-
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~   98 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC   98 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence            556777899999999999999999999999774   44555444433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=90.82  E-value=0.51  Score=37.08  Aligned_cols=40  Identities=15%  Similarity=-0.120  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ..+..|.+|..+++.++|..+|.+|+..+|...+++..|-
T Consensus       249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  288 (472)
T 4g1t_A          249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG  288 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            3455699999999999999999999999999998877664

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=90.78  E-value=0.21  Score=43.66  Aligned_cols=46  Identities=13%  Similarity=-0.088  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML   83 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL   83 (140)
                      ...+.+|.+|..+++.+.|..+|.+|+.+||...+|...+..-.+.
T Consensus       535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          535 SAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            3467779999999999999999999999999999999888777655

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=90.65  E-value=0.44  Score=37.44  Aligned_cols=34  Identities=15%  Similarity=0.061  Sum_probs=29.2

Q ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443           33 INISSAICFLRGKAYEALGNCAQARLWYKAAIIA   66 (140)
Q Consensus        33 ikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~   66 (140)
                      .+..+++|.+.|.+|..+|+.+.|.++|++|+.+
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~   80 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEEL   80 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3345788999999999999999999999999987

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=90.39  E-value=0.67  Score=35.47  Aligned_cols=58  Identities=14%  Similarity=0.008  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC--HHHHHHHHhcC
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT--CEQETSLLSSL   95 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt--~~EE~eLl~sL   95 (140)
                      ...+..|..+...++++.|...|++||..||.+.+|.-.|-.-.+-.  .++-..+++.+
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~  177 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI  177 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34567899999999999999999999999999999988776543322  34444455443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=90.08  E-value=0.32  Score=35.26  Aligned_cols=34  Identities=18%  Similarity=0.107  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPL   69 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~   69 (140)
                      .+...+..|.+|..+++.++|..+|++|+.+++.
T Consensus       277 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          277 VTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            3455666799999999999999999999998764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=89.95  E-value=0.45  Score=33.70  Aligned_cols=45  Identities=13%  Similarity=0.134  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIA--------DPLCYEALECLIEN   80 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~--------Dv~CyEAFe~Lv~~   80 (140)
                      .+..++..|.+|..++++++|..+|.+|+.+        +|....++..|-.-
T Consensus       126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  178 (283)
T 3edt_B          126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC  178 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            3455666799999999999999999999999        88777777666543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=89.88  E-value=1.8  Score=35.18  Aligned_cols=36  Identities=19%  Similarity=0.107  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcH
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIAD--PLCY   71 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~D--v~Cy   71 (140)
                      .+.+++..|.+++.+|+++.|..||.+|+.-.  |.|+
T Consensus       170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~  207 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA  207 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcccc
Confidence            46677888999999999999999999998655  6654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=89.24  E-value=0.76  Score=29.38  Aligned_cols=32  Identities=16%  Similarity=0.326  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443           35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIA   66 (140)
Q Consensus        35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~   66 (140)
                      ..+..++..|.+|..+++.++|..+|.+|+.+
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34455555566666666666666666666643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=89.19  E-value=0.75  Score=33.83  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE   75 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe   75 (140)
                      .++|| +..|-+++++++|+.+....|+++|.|-.|-.
T Consensus        76 ~lY~L-Avg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           76 YVFYL-AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHH-HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHH-HHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            45666 99999999999999999999999999988754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=89.11  E-value=0.81  Score=29.23  Aligned_cols=33  Identities=15%  Similarity=0.058  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADP   68 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv   68 (140)
                      .+..++..|.+|..+++++.|..+|.+|+.+.+
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~   40 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK   40 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            445555567777777777777777777766543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=88.86  E-value=0.52  Score=38.26  Aligned_cols=55  Identities=18%  Similarity=0.227  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHH---HH----HccC---CCHHHHHHHHh
Q 032443           38 AICFLRGKAYEALG--NCAQARLWYKAAIIADPLCYEALEC---LI----ENHM---LTCEQETSLLS   93 (140)
Q Consensus        38 smc~LRGk~yeal~--N~~~A~~~YkeAL~~Dv~CyEAFe~---Lv----~~~l---Lt~~EE~eLl~   93 (140)
                      +..+.||.+...++  +...|..++..+|..+|+||.|+..   ++    . ++   ...++|.++++
T Consensus        68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~-~l~~~~~~~~EL~~~~  134 (306)
T 3dra_A           68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIME-LNNNDFDPYREFDILE  134 (306)
T ss_dssp             HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH-HTTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH-hccccCCHHHHHHHHH
Confidence            34678899998888  8899999999999999999888743   12    2 22   45677777775

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=88.70  E-value=0.97  Score=34.55  Aligned_cols=40  Identities=8%  Similarity=-0.039  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLC--YEALECLI   78 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C--yEAFe~Lv   78 (140)
                      ..+..|.+|..+++++.|...|.++|+.||..  -+|...|.
T Consensus       221 ~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~  262 (287)
T 3qou_A          221 LATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ  262 (287)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence            34555888888888888888888888888877  56665554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=88.63  E-value=0.78  Score=38.44  Aligned_cols=62  Identities=11%  Similarity=0.036  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHH---HHHccCC-CHHHHHHHHh-cCCCCc
Q 032443           38 AICFLRGKAYEALG-NCAQARLWYKAAIIADPLCYEALEC---LIENHML-TCEQETSLLS-SLEFGF   99 (140)
Q Consensus        38 smc~LRGk~yeal~-N~~~A~~~YkeAL~~Dv~CyEAFe~---Lv~~~lL-t~~EE~eLl~-sL~f~~   99 (140)
                      ...+-||.+...++ ..+.|..++..+|..+|+||.|+..   ++.+..- .+++|.++++ .|..++
T Consensus        89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp  156 (349)
T 3q7a_A           89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP  156 (349)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Confidence            34678999999999 5999999999999999999999854   2332212 5688888886 566654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=88.51  E-value=1.1  Score=32.73  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=12.5

Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 032443           43 RGKAYEA----LGNCAQARLWYKAAIIADP   68 (140)
Q Consensus        43 RGk~yea----l~N~~~A~~~YkeAL~~Dv   68 (140)
                      .|.+|..    .++.++|..||+.|+..++
T Consensus       188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~  217 (273)
T 1ouv_A          188 AGNMYHHGEGATKNFKEALARYSKACELEN  217 (273)
T ss_dssp             HHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence            3444444    4455555555554444443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.26  E-value=0.59  Score=31.22  Aligned_cols=29  Identities=7%  Similarity=-0.245  Sum_probs=26.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPL   69 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~   69 (140)
                      ++.|.++...+++.+|+..|..+|..||.
T Consensus        47 ~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A           47 SLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            34499999999999999999999999998

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=88.17  E-value=0.42  Score=36.39  Aligned_cols=35  Identities=14%  Similarity=0.086  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEA   73 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEA   73 (140)
                      .++-.|.||..+++...|..+|.+|+.+||...++
T Consensus       201 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            44556999999999999999999999999987765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=87.99  E-value=1  Score=31.81  Aligned_cols=47  Identities=19%  Similarity=0.051  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHccC
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIA--------DPLCYEALECLIENHM   82 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~--------Dv~CyEAFe~Lv~~~l   82 (140)
                      .+..++..|.+|..++++++|..+|.+|+.+        +|...+++..|-.-.+
T Consensus        84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  138 (283)
T 3edt_B           84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ  138 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence            4556666799999999999999999999998        6777777766655443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=87.80  E-value=1.4  Score=33.10  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYE   72 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE   72 (140)
                      +...+++|.++..+++++.|..+|.+|+.++|...+
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~   44 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK   44 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHH
Confidence            344668899999999999999999999999998854

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=87.39  E-value=0.88  Score=34.59  Aligned_cols=34  Identities=21%  Similarity=0.024  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC
Q 032443           36 SSAICFLRGKAYEAL-GNCAQARLWYKAAIIADPL   69 (140)
Q Consensus        36 ~ssmc~LRGk~yeal-~N~~~A~~~YkeAL~~Dv~   69 (140)
                      .+..+.-.|.+|..+ ++.++|..+|.+||.+++.
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~  150 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence            344555679999995 9999999999999999774

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=87.28  E-value=1  Score=32.38  Aligned_cols=36  Identities=14%  Similarity=0.257  Sum_probs=22.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443           34 NISSAICFLRGKAYEALGNCAQARLWYKAAIIADPL   69 (140)
Q Consensus        34 kl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~   69 (140)
                      ...+...+..|.+|..++++++|..+|.+|+.+.+.
T Consensus       260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            344555555577777777777777777777665443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=87.10  E-value=1.4  Score=31.93  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=14.7

Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHhc
Q 032443           44 GKAYEA----LGNCAQARLWYKAAIIA   66 (140)
Q Consensus        44 Gk~yea----l~N~~~A~~~YkeAL~~   66 (140)
                      |.+|..    ..|..+|..||+.|+..
T Consensus       132 g~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          132 GLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            666666    56666666666666665

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=86.77  E-value=0.81  Score=34.50  Aligned_cols=31  Identities=23%  Similarity=0.238  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 032443           36 SSAICFLRGKAYEALGN-CAQARLWYKAAIIA   66 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N-~~~A~~~YkeAL~~   66 (140)
                      .+...+..|.+|..+++ +++|.++|++||.+
T Consensus       235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            46677888999999995 69999999999974

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=86.55  E-value=1.5  Score=31.59  Aligned_cols=44  Identities=14%  Similarity=0.134  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHH
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIA--------DPLCYEALECLIE   79 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~--------Dv~CyEAFe~Lv~   79 (140)
                      .+...+..|.+|..+++++.|.++|.+|+.+        ++....++..|..
T Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  203 (311)
T 3nf1_A          152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS  203 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4455667799999999999999999999998        7776666665544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=86.51  E-value=1.6  Score=31.75  Aligned_cols=39  Identities=18%  Similarity=0.273  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ++..|.+|...+|.++|..||+.|+..+  ..+|.-.|=.-
T Consensus        21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~   59 (212)
T 3rjv_A           21 QYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQL   59 (212)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence            4444788877888888888888877653  45665555443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=86.42  E-value=0.78  Score=35.18  Aligned_cols=44  Identities=25%  Similarity=0.110  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHHHHHHHH
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIA------DPLCYEALECLIE   79 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~------Dv~CyEAFe~Lv~   79 (140)
                      .+.+++..|.+|..++++++|..+|.+|+.+      ++....++..|-.
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  134 (411)
T 4a1s_A           85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN  134 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence            4556677788888888888888888888877      5655555555443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=86.41  E-value=1.4  Score=34.24  Aligned_cols=44  Identities=16%  Similarity=0.035  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCcHHHHHHHHH
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAII-----ADPLCYEALECLIE   79 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~-----~Dv~CyEAFe~Lv~   79 (140)
                      .+...+-.|.+|..+++.++|..+|.+|+.     .+|....++..|-.
T Consensus       221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  269 (378)
T 3q15_A          221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW  269 (378)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence            344444558888888888888888888887     67766666655543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=86.29  E-value=1.8  Score=31.62  Aligned_cols=38  Identities=24%  Similarity=0.239  Sum_probs=26.4

Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           40 CFLRGKAYEA----LGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        40 c~LRGk~yea----l~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ++..|.+|..    .++.++|..+|++|+..+  +.+|+..|-.
T Consensus        41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~   82 (273)
T 1ouv_A           41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGN   82 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence            4555777777    777888888888777775  5666655543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=86.16  E-value=1.6  Score=33.73  Aligned_cols=44  Identities=16%  Similarity=0.118  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cC-CCcHHHHHHHHH
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAII-----AD-PLCYEALECLIE   79 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~-----~D-v~CyEAFe~Lv~   79 (140)
                      .+...+-.|.+|..++++++|..+|.+|+.     .| +....++..|-.
T Consensus       223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  272 (383)
T 3ulq_A          223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ  272 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            444555668888888888888888888888     46 666555555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=86.11  E-value=1.5  Score=29.97  Aligned_cols=26  Identities=19%  Similarity=0.224  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAI   64 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL   64 (140)
                      ..+..|.+|..++++++|..+|.+|+
T Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A          109 NAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            33334666666666666666666665

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=85.52  E-value=1.4  Score=35.86  Aligned_cols=43  Identities=19%  Similarity=0.121  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      +-.-+-+|.|+..+|+.+.|+.+|.+++..||. -++..+|.+-
T Consensus       208 ~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~  250 (282)
T 4f3v_A          208 RAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP  250 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence            335577799999999999999999999999999 8888888653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=85.24  E-value=2.4  Score=30.69  Aligned_cols=31  Identities=10%  Similarity=0.038  Sum_probs=28.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPLCY   71 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy   71 (140)
                      +.+|.+|...++...|..+|..++..+|..-
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  181 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ  181 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence            5679999999999999999999999999875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=85.03  E-value=1.4  Score=35.59  Aligned_cols=56  Identities=16%  Similarity=0.043  Sum_probs=40.5

Q ss_pred             HHHHHHHHHH----HHc---CCHHHHHHHHHHHHhcCCCcHHHHHH---HH-HccCCCHHHHHHHHh
Q 032443           38 AICFLRGKAY----EAL---GNCAQARLWYKAAIIADPLCYEALEC---LI-ENHMLTCEQETSLLS   93 (140)
Q Consensus        38 smc~LRGk~y----eal---~N~~~A~~~YkeAL~~Dv~CyEAFe~---Lv-~~~lLt~~EE~eLl~   93 (140)
                      .+-+-||.+.    ..+   ++..++..++..+|..||+||.|+..   ++ .-+..+..+|.++++
T Consensus       104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~  170 (306)
T 3dra_A          104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVD  170 (306)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence            3466788888    777   78999999999999999999999743   12 222223336766654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=84.06  E-value=0.99  Score=38.57  Aligned_cols=31  Identities=32%  Similarity=0.291  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLC   70 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C   70 (140)
                      ..++|++++..|+.+.|.+.|.+|++++|.-
T Consensus       313 ~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            3678999999999999999999999999953

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=83.74  E-value=1  Score=37.34  Aligned_cols=56  Identities=13%  Similarity=0.223  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCcHHHHHH---HHHccCC--CHHHHHHHHh
Q 032443           37 SAICFLRGKAYEALGN----------CAQARLWYKAAIIADPLCYEALEC---LIENHML--TCEQETSLLS   93 (140)
Q Consensus        37 ssmc~LRGk~yeal~N----------~~~A~~~YkeAL~~Dv~CyEAFe~---Lv~~~lL--t~~EE~eLl~   93 (140)
                      .++..-||.+..+++.          ...+..++..+|..+|+||.|+..   ++. ++-  .-++|.++++
T Consensus        64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~-~l~~~~~~~EL~~~~  134 (331)
T 3dss_A           64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCA  134 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence            4568889999999876          689999999999999999999863   333 232  2467777775

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=83.68  E-value=2.3  Score=32.97  Aligned_cols=46  Identities=11%  Similarity=0.000  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHccC
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIA-----DPLCYEALECLIENHM   82 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~-----Dv~CyEAFe~Lv~~~l   82 (140)
                      +..++..|.+|..+++.++|..+|++|+.+     |+.....+..|-.-+.
T Consensus       261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~  311 (378)
T 3q15_A          261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK  311 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            455666699999999999999999999998     6666666655544443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=83.29  E-value=3.3  Score=28.38  Aligned_cols=36  Identities=22%  Similarity=0.221  Sum_probs=25.1

Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           40 CFLRGKAYEA----LGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        40 c~LRGk~yea----l~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      |+..|.+|..    ..|..+|.+||+.|...  ...+|...|
T Consensus        60 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~L   99 (138)
T 1klx_A           60 CRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLIL   99 (138)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHH
Confidence            4444888887    78888888888888765  345555444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=83.18  E-value=1.5  Score=33.86  Aligned_cols=33  Identities=15%  Similarity=-0.106  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCY   71 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy   71 (140)
                      ..+.+|.+|..+|+.+.|..+|+.++..+|...
T Consensus       132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~  164 (291)
T 3mkr_A          132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDAT  164 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH
Confidence            466789999999999999999999999999864

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=83.05  E-value=1.3  Score=33.37  Aligned_cols=31  Identities=19%  Similarity=0.201  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 032443           36 SSAICFLRGKAYEALGNCAQA-RLWYKAAIIA   66 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A-~~~YkeAL~~   66 (140)
                      .+...+..|.+|..+++.++| ..+|++|+.+
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            366678889999999999999 8899999964

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=82.95  E-value=3.2  Score=31.71  Aligned_cols=37  Identities=22%  Similarity=0.263  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYE   72 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE   72 (140)
                      .+...+.+|.+|...++++.|..+|.+|+.++|...+
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~   83 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR   83 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh
Confidence            4555667899999999999999999999999999764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=82.65  E-value=1.7  Score=37.70  Aligned_cols=55  Identities=13%  Similarity=0.073  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHH--HHHccCC-CHHHHHHHHh
Q 032443           39 ICFLRGKAYEALG--NCAQARLWYKAAIIADPLCYEALEC--LIENHML-TCEQETSLLS   93 (140)
Q Consensus        39 mc~LRGk~yeal~--N~~~A~~~YkeAL~~Dv~CyEAFe~--Lv~~~lL-t~~EE~eLl~   93 (140)
                      ..+-||-+...++  ++++|.++|..||.+||++|.|+..  .+-.+|= ..++|.+...
T Consensus       109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~  168 (567)
T 1dce_A          109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  168 (567)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence            4677999999999  7799999999999999999999864  2222333 5677877764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=82.29  E-value=1.6  Score=36.03  Aligned_cols=56  Identities=13%  Similarity=0.075  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHH--HHHccCC-CHHHHHHHHh
Q 032443           38 AICFLRGKAYEALG--NCAQARLWYKAAIIADPLCYEALEC--LIENHML-TCEQETSLLS   93 (140)
Q Consensus        38 smc~LRGk~yeal~--N~~~A~~~YkeAL~~Dv~CyEAFe~--Lv~~~lL-t~~EE~eLl~   93 (140)
                      .+.+-||.+...++  ..+.|..++..+|..||++|.|+..  .+=.++- ..++|.+++.
T Consensus       109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A          109 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            34667999999999  4899999999999999999999853  2222232 3577877765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=81.84  E-value=1.8  Score=32.51  Aligned_cols=32  Identities=28%  Similarity=0.192  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443           35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIA   66 (140)
Q Consensus        35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~   66 (140)
                      ..+.+++..|.+|..++++++|..+|.+|+.+
T Consensus        45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   76 (406)
T 3sf4_A           45 TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   76 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            34566677788888888888888888888776

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=81.01  E-value=1.7  Score=33.22  Aligned_cols=31  Identities=10%  Similarity=0.029  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLC   70 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C   70 (140)
                      ..+-+|.+|..+++...|..+|.+|| +||..
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence            34445666666666666666666666 66643

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=80.99  E-value=1.6  Score=36.49  Aligned_cols=39  Identities=10%  Similarity=0.189  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHc-C-CHHHHHHHHHHHHhcCCCcHHHHHH
Q 032443           38 AICFLRGKAYEAL-G-NCAQARLWYKAAIIADPLCYEALEC   76 (140)
Q Consensus        38 smc~LRGk~yeal-~-N~~~A~~~YkeAL~~Dv~CyEAFe~   76 (140)
                      .+-+-||.+...+ + +.+++.+++..+|..||+||.|+..
T Consensus       124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~  164 (349)
T 3q7a_A          124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAY  164 (349)
T ss_dssp             HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3467799999999 7 8999999999999999999999753

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=80.88  E-value=2.1  Score=29.37  Aligned_cols=28  Identities=25%  Similarity=0.222  Sum_probs=24.7

Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 032443           40 CFLRGKAYEA----LGNCAQARLWYKAAIIAD   67 (140)
Q Consensus        40 c~LRGk~yea----l~N~~~A~~~YkeAL~~D   67 (140)
                      |+-.|.+|..    ..|..+|.+||+.|....
T Consensus        96 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           96 CLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            4555999999    999999999999999874

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=80.55  E-value=2  Score=33.26  Aligned_cols=30  Identities=20%  Similarity=0.110  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIA   66 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~   66 (140)
                      .-..|.+|.+|...+++++|..+|++|+.+
T Consensus       103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~  132 (383)
T 3ulq_A          103 YYFNFFRGMYELDQREYLSAIKFFKKAESK  132 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            344567899999999999999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.6
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.47
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.43
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.39
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.35
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.12
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.08
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.96
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.95
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.94
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.93
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.74
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.74
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.73
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.57
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.52
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.48
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.47
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.44
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.41
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.41
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.22
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.16
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.01
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.9
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	95.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	95.64
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.63
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	95.45
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.25
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	95.13
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.1
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	94.98
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	94.98
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	93.88
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	93.14
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	92.95
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	92.46
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	91.01
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	89.88
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	89.51
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	88.81
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	85.88
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	85.54
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	84.5

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=6e-05  Score=53.58  Aligned_cols=46  Identities=26%  Similarity=0.269  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH   81 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~   81 (140)
                      .|.+.|.||.+|..+|++++|..+|++||.+||.+.+|+..|=.-+
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   81 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL   81 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHH
Confidence            6778899999999999999999999999999999999987664433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=8.7e-05  Score=51.06  Aligned_cols=46  Identities=17%  Similarity=0.022  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      +...+.+|.||..++++++|..+|..||.+||.+.+|+-.|-.-++
T Consensus        38 ~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1          38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            5567778999999999999999999999999999999876654443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00019  Score=46.54  Aligned_cols=45  Identities=27%  Similarity=0.205  Sum_probs=37.7

Q ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           32 EINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        32 gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      .++...++..| |.+|..+++.++|..+|++||++||..-+|..-|
T Consensus        42 ~~~~~~~l~~L-g~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_          42 TIDKVSVLDYL-SYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             SSCHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccHHHHHHHH-hhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            34434445555 9999999999999999999999999999998765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.39  E-value=0.00018  Score=47.65  Aligned_cols=41  Identities=15%  Similarity=-0.049  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ..+.+|.+|..+++...|..+|..||.+||.+.+|+-.|-.
T Consensus        52 a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~   92 (112)
T d1hxia_          52 AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   92 (112)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHH
Confidence            34455666666666666666666666666666666655543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00018  Score=51.93  Aligned_cols=43  Identities=28%  Similarity=0.189  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +.+++-+|.+|..++++++|.++|.+||++||+...|+..+=.
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~   78 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   78 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            4568889999999999999999999999999999999976643

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.12  E-value=0.00043  Score=48.46  Aligned_cols=45  Identities=18%  Similarity=-0.030  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      .+.++.=+|.||..+++...|..+|..||.+||.+..|+-.+-.-
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~  107 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA  107 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHH
Confidence            344444467777777777777777777777777777777655443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00056  Score=46.79  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      ..|..|.+|..+|++++|..+|..||.+||.+.+|...+
T Consensus        74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          74 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            345669999999999999999999999999999987554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00059  Score=48.97  Aligned_cols=38  Identities=21%  Similarity=0.223  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      .+.+|.+|..+|+++.|..+|.+||++||.+.+|+..|
T Consensus       342 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l  379 (388)
T d1w3ba_         342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM  379 (388)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34446666666666666666666666666665555444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.95  E-value=0.00062  Score=47.15  Aligned_cols=74  Identities=15%  Similarity=0.042  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCH--HHH-HHHHhcCCCCchhHHHHHHH
Q 032443           35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTC--EQE-TSLLSSLEFGFEDGWLSSFY  108 (140)
Q Consensus        35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~--~EE-~eLl~sL~f~~e~~~lk~lY  108 (140)
                      +.+++.+=+|.||..+++.+.|.++|..||.+||.+..|+-.+-.-+.-..  ++- ..|-..|...|.+.-++..+
T Consensus        65 ~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l  141 (153)
T d2fbna1          65 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY  141 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            445555568999999999999999999999999999999877655443222  221 22334555555443333333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.94  E-value=0.00087  Score=46.48  Aligned_cols=64  Identities=19%  Similarity=0.017  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHH---HHHHHhcCCCCchh
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQ---ETSLLSSLEFGFED  101 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~E---E~eLl~sL~f~~e~  101 (140)
                      ...+-||.||..+++..+|..+|..||.+||.+.+|+-.+-.-++-...-   ...|-..|...|.+
T Consensus        78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n  144 (169)
T d1ihga1          78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  144 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            33444789999999999999999999999999988887764443332222   22333455555533

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00092  Score=45.77  Aligned_cols=44  Identities=16%  Similarity=-0.141  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      +..++.+|.||..+++.+.|..+|+.||.+||...+|+..|-.-
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_          44 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            45567779999999999999999999999999999998876443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0015  Score=45.82  Aligned_cols=45  Identities=16%  Similarity=-0.094  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +.++++.-+|.||..++++++|..+|..||.+||.+..|+-.+-.
T Consensus        60 ~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  104 (170)
T d1p5qa1          60 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGE  104 (170)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHH
Confidence            344455556777777777777777777777777777777665544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0017  Score=42.90  Aligned_cols=65  Identities=12%  Similarity=0.021  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC--HHHHHHHH-hcCCCCchh
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT--CEQETSLL-SSLEFGFED  101 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt--~~EE~eLl-~sL~f~~e~  101 (140)
                      +...+.+|.||..++++..|...|..|+++||.+.+|+-.+-.-.+..  .++-...+ ..+...|.+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          37 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            346677789999999999999999999999999998887765543332  22222222 355665544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0016  Score=42.99  Aligned_cols=35  Identities=26%  Similarity=0.246  Sum_probs=21.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      +|..+...+++++|..+|.+||.+||...+++..+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~   43 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNR   43 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcc
Confidence            56666666666666666666666666666655544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.57  E-value=0.0021  Score=42.18  Aligned_cols=40  Identities=28%  Similarity=0.184  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      .|=+|.++...+++.+|+.+|++||+++|.+.+|+..|-.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~   58 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGL   58 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhh
Confidence            4667999999999999999999999999999999987654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0016  Score=44.46  Aligned_cols=40  Identities=23%  Similarity=0.181  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      .+.+|.+|..+++++.|..+|++|++++|...++...|..
T Consensus        81 ~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~  120 (159)
T d1a17a_          81 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE  120 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            5778999999999999999999999999999998877643

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.48  E-value=0.0035  Score=43.12  Aligned_cols=40  Identities=15%  Similarity=0.033  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ..|-+|+||..+++++.|..+|..||++||.+-++...|-
T Consensus       103 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~  142 (153)
T d2fbna1         103 ALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE  142 (153)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             hhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3678899999999999999999999999999999876653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.47  E-value=0.0034  Score=43.30  Aligned_cols=40  Identities=20%  Similarity=0.119  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ..+-||++|..+++++.|+++|+.||.+||.+-++...|-
T Consensus       113 a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1         113 ALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3677899999999999999999999999999998877764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.001  Score=42.89  Aligned_cols=35  Identities=17%  Similarity=0.173  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLC   70 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C   70 (140)
                      .|-=||-.|+++-.++++.+|+.||.+||++++.+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~   38 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEG   38 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh
Confidence            34569999999999999999999999999997765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.41  E-value=0.0039  Score=43.30  Aligned_cols=40  Identities=15%  Similarity=0.122  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ..+.||++|..+++.++|..+|..||.+||.+-++...|-
T Consensus       100 a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~  139 (168)
T d1kt1a1         100 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIF  139 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4778899999999999999999999999999999988764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0027  Score=44.66  Aligned_cols=42  Identities=17%  Similarity=0.000  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      ...+.+|.+|..+++.+.|..+|++||.+||...+|+-.|-.
T Consensus        72 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  113 (259)
T d1xnfa_          72 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  113 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             HHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHH
Confidence            346678999999999999999999999999999999876654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0049  Score=43.96  Aligned_cols=42  Identities=19%  Similarity=0.100  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN   80 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~   80 (140)
                      ..+.+|.+|..++++++|..+|+.||+++|.+.+|+..|-.-
T Consensus        35 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~   76 (388)
T d1w3ba_          35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNV   76 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            456679999999999999999999999999999998776543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0064  Score=42.46  Aligned_cols=40  Identities=23%  Similarity=0.076  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ..+.+|+||..+++++.|..+|++|+.+||.+-++-..|-
T Consensus        98 a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~  137 (170)
T d1p5qa1          98 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA  137 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3567799999999999999999999999999988877664

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0066  Score=43.96  Aligned_cols=40  Identities=20%  Similarity=0.172  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL   77 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L   77 (140)
                      .+++..|.++..+++.+.|..+|.+|+..+|.+.+++..|
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  212 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL  212 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccccccccccchhhh
Confidence            3444445555555555555555555555555555555443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0068  Score=43.90  Aligned_cols=38  Identities=32%  Similarity=0.350  Sum_probs=22.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      |-+|+.|...|+++.|..+|.+||+.||...+|+..|-
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg   60 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLG   60 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44566666666666666666666666666666655543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.90  E-value=0.0061  Score=41.36  Aligned_cols=58  Identities=19%  Similarity=0.052  Sum_probs=42.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC--HHH-HHHHHhcCCCCc
Q 032443           42 LRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT--CEQ-ETSLLSSLEFGF   99 (140)
Q Consensus        42 LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt--~~E-E~eLl~sL~f~~   99 (140)
                      -.|.+|-..++++.|..+|.+||.+||.+..++..|-.-++-.  .++ ...+-..|...|
T Consensus         9 ~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p   69 (201)
T d2c2la1           9 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG   69 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence            4699999999999999999999999999999988554333222  222 223335677665

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.01  Score=45.04  Aligned_cols=64  Identities=9%  Similarity=0.037  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH--ccC-CCHHHHHHHHh-cCCCCc
Q 032443           35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE--NHM-LTCEQETSLLS-SLEFGF   99 (140)
Q Consensus        35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~--~~l-Lt~~EE~eLl~-sL~f~~   99 (140)
                      ..-++.++ |.++.+.+..++|..+|..||.++|.+++|+.-+-.  ..+ -..+|+.++.+ .|..+|
T Consensus        42 ~~~a~~~~-~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p  109 (315)
T d2h6fa1          42 FRDVYDYF-RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP  109 (315)
T ss_dssp             HHHHHHHH-HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence            45667777 888888999999999999999999999998654321  222 23466666654 345444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0091  Score=39.75  Aligned_cols=34  Identities=18%  Similarity=0.123  Sum_probs=17.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443           42 LRGKAYEALGNCAQARLWYKAAIIADPLCYEALE   75 (140)
Q Consensus        42 LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe   75 (140)
                      -||.||..++++..|..+|..||.+||....++.
T Consensus        43 ~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_          43 NQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             hHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            3455555555555555555555555555444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0076  Score=45.85  Aligned_cols=33  Identities=6%  Similarity=-0.042  Sum_probs=15.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443           43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALE   75 (140)
Q Consensus        43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe   75 (140)
                      ||.+|..+++++.|.++|..||.+||.++.|+.
T Consensus       152 ~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~  184 (315)
T d2h6fa1         152 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN  184 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHH
Confidence            344444444444444444444444444444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0043  Score=41.45  Aligned_cols=38  Identities=16%  Similarity=0.016  Sum_probs=34.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           42 LRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        42 LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      -.|.+|-..+++++|..||.+||.+||...+++..+-.
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~   46 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAA   46 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHH
Confidence            36999999999999999999999999999999886543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.13  E-value=0.0096  Score=44.19  Aligned_cols=43  Identities=16%  Similarity=0.121  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE   79 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~   79 (140)
                      +..++.+|.+|..+++.+.|..+|..|+.+||.....+..|-.
T Consensus       276 ~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~  318 (334)
T d1dcea1         276 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS  318 (334)
T ss_dssp             HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence            4556777999999999999999999999999999999887743

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.10  E-value=0.017  Score=41.04  Aligned_cols=37  Identities=11%  Similarity=0.113  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE   75 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe   75 (140)
                      .+++| |.+|-.+++.++|+.++..+|.+||.|-.|-.
T Consensus        75 ~lY~L-av~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          75 CLYYL-TIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             HHHHH-HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHH-HHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            33445 99999999999999999999999999999853

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.98  E-value=0.014  Score=39.99  Aligned_cols=40  Identities=23%  Similarity=0.141  Sum_probs=32.4

Q ss_pred             HHHHHHHHHH----------HcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           39 ICFLRGKAYE----------ALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        39 mc~LRGk~ye----------al~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ..+.+|.++.          .++.+++|+.+|+.||++||.+.+|+..|-
T Consensus        33 ~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG   82 (145)
T d1zu2a1          33 NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG   82 (145)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHH
Confidence            3445576664          567789999999999999999999997664

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.98  E-value=0.012  Score=40.20  Aligned_cols=35  Identities=20%  Similarity=0.120  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLC   70 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C   70 (140)
                      .+..++-||.+|..+++.+.|.++|.+||.+++.-
T Consensus        99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            34457888999999999999999999999886643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.043  Score=44.17  Aligned_cols=78  Identities=17%  Similarity=0.082  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHH---HHHhcC----CCCchhHHHHHHHH
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQET---SLLSSL----EFGFEDGWLSSFYS  109 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~---eLl~sL----~f~~e~~~lk~lY~  109 (140)
                      -++.+| |.++...+++++|..||++|+.++|.+..++.+|=--..-..+...   -+..+|    ||...-.-|..+|.
T Consensus       153 ~~~~~L-G~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         153 HCLVHL-GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHH-HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            344555 9999999999999999999999999999999988554433332222   222333    44444455556666


Q ss_pred             Hhhhcc
Q 032443          110 CLIKKC  115 (140)
Q Consensus       110 srL~Ky  115 (140)
                      ...++.
T Consensus       232 ~~~~~~  237 (497)
T d1ya0a1         232 KALESR  237 (497)
T ss_dssp             HHTTSC
T ss_pred             Hhhhhh
Confidence            555444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.14  E-value=0.027  Score=38.51  Aligned_cols=34  Identities=15%  Similarity=0.067  Sum_probs=29.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           45 KAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        45 k~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ..|++++.+++|..+|..||.+||...+++..+=
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g   38 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWG   38 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence            3578899999999999999999999999886554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=92.95  E-value=0.092  Score=36.27  Aligned_cols=37  Identities=22%  Similarity=0.148  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 032443           35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCY   71 (140)
Q Consensus        35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy   71 (140)
                      +.+-...||++++...|++++|..+|++||..+|...
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~   46 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW   46 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC
Confidence            5677888999999999999999999999999988763

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.46  E-value=0.14  Score=36.30  Aligned_cols=77  Identities=14%  Similarity=0.073  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHH---------H-HhcCCCCchhHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETS---------L-LSSLEFGFEDGWLSSF  107 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~e---------L-l~sL~f~~e~~~lk~l  107 (140)
                      ..+.-+|.++..+|+...|..+++.+|.+||..-.+...|+.-..-+..-+..         . -..|...|..+ ++.|
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~-l~~l  146 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT-LRAL  146 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH-HHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH-HHHH
Confidence            34566799999999999999999999999999999999988776655433322         2 23466666543 6778


Q ss_pred             HHHhhhcc
Q 032443          108 YSCLIKKC  115 (140)
Q Consensus       108 Y~srL~Ky  115 (140)
                      |...+..-
T Consensus       147 ~~~il~~~  154 (179)
T d2ff4a2         147 NERILRQQ  154 (179)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHhCC
Confidence            88777654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.01  E-value=0.11  Score=38.06  Aligned_cols=63  Identities=11%  Similarity=0.026  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCcHHHHHHHH---HccCCCHHHHHHHHh-cCCCCc
Q 032443           37 SAICFLRGKAYEALGN--CAQARLWYKAAIIADPLCYEALECLI---ENHMLTCEQETSLLS-SLEFGF   99 (140)
Q Consensus        37 ssmc~LRGk~yeal~N--~~~A~~~YkeAL~~Dv~CyEAFe~Lv---~~~lLt~~EE~eLl~-sL~f~~   99 (140)
                      ....+-||.++..++.  ...|..++..||..||++++++..+.   ....--.++..+.++ .+..+|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p  175 (334)
T d1dcea1         107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  175 (334)
T ss_dssp             HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence            3445667777777664  67888888888888888888765433   222333455555543 444444

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.88  E-value=0.23  Score=34.77  Aligned_cols=34  Identities=24%  Similarity=0.091  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLC   70 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C   70 (140)
                      +...+.||.+|..+++++.|...|.+||..++.+
T Consensus        70 ~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          70 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            4567889999999999999999999999876543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=89.51  E-value=0.47  Score=32.47  Aligned_cols=30  Identities=17%  Similarity=0.083  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443           37 SAICFLRGKAYEALGNCAQARLWYKAAIIA   66 (140)
Q Consensus        37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~   66 (140)
                      +...+++|.+|..+|+++.|.++|++||.+
T Consensus       291 ~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         291 NRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            344556677777777777777777777765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=88.81  E-value=0.21  Score=33.51  Aligned_cols=34  Identities=12%  Similarity=-0.162  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443           36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPL   69 (140)
Q Consensus        36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~   69 (140)
                      .+....-+|.+|..+++++.|+.+|.+||++.+.
T Consensus        54 ~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1          54 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            3445556899999999999999999999997653

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.88  E-value=0.64  Score=37.01  Aligned_cols=39  Identities=13%  Similarity=-0.021  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ++-.|.+|...++...|+.+|+.||.+++-.-.|..-|.
T Consensus       189 ~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~  227 (497)
T d1ya0a1         189 YNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ  227 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            455699999999999999999999999999999888775

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=85.54  E-value=0.71  Score=34.61  Aligned_cols=41  Identities=12%  Similarity=-0.114  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443           38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI   78 (140)
Q Consensus        38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv   78 (140)
                      ......|++|..+|++++|...|..|+++||..-.++..+-
T Consensus        31 ~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~   71 (264)
T d1zbpa1          31 SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR   71 (264)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            34556699999999999999999999999999998877654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.50  E-value=0.31  Score=32.40  Aligned_cols=37  Identities=3%  Similarity=-0.120  Sum_probs=30.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443           46 AYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM   82 (140)
Q Consensus        46 ~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l   82 (140)
                      .+..++++.+|.+.|+.||.+||...++.--|-.--+
T Consensus         8 ~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~   44 (122)
T d1nzna_           8 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV   44 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHT
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999999998775544333