Citrus Sinensis ID: 032476

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
cccccccccccccEEEccccccccEEEEccccccEEEEEEEEEccccccccccccccccEEEEEEEcccccccccEEEEEEEEEcccEEcccccEEEEcccEEEEEccccccccEEEEcHHHHHHHHHcccccccccccc
ccccccccccccEEEEEEcEEcccEEEEcEcccEEEEEEEEEcccccccccccEEccccEEEEEEEEEcccccccEEEEEEEEccccEEcccccEEEEcccEEEEEcccccEccccEcccEcHHHccccHHHHcccccEc
mskrgrggsagnkfrmslglpvaatvncadntgaknlYIISVKGIKgrlnrlpsacvgdMVMATVKKgkpdlrkkvmpavivrqrkpwrrkdgvfmyfednagvivnpkgemkgsaitgpigkecaDLWPRIASAANAIV
mskrgrggsagnkfrmSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMAtvkkgkpdlrkkvmpavivrqrkpwrrkdgvfMYFEDnagvivnpkgeMKGSAITGPIGKECADLWPRIASAANAIV
MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
***************MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIA*******
****************SLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGK*DLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
**********GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
**********GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANA**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query140 2.2.26 [Sep-21-2011]
P49690140 60S ribosomal protein L23 yes no 1.0 1.0 0.978 6e-75
Q07760140 60S ribosomal protein L23 N/A no 1.0 1.0 0.978 9e-75
Q9XEK8139 60S ribosomal protein L23 N/A no 0.992 1.0 0.914 1e-68
Q6PC14140 60S ribosomal protein L23 yes no 0.992 0.992 0.856 8e-65
P62832140 60S ribosomal protein L23 yes no 0.992 0.992 0.848 2e-64
P62831140 60S ribosomal protein L23 yes no 0.992 0.992 0.848 2e-64
P62830140 60S ribosomal protein L23 yes no 0.992 0.992 0.848 2e-64
Q90YU5140 60S ribosomal protein L23 N/A no 0.992 0.992 0.848 2e-64
P62829140 60S ribosomal protein L23 yes no 0.992 0.992 0.848 2e-64
Q3T057140 60S ribosomal protein L23 yes no 0.992 0.992 0.848 2e-64
>sp|P49690|RL23_ARATH 60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3 Back     alignment and function desciption
 Score =  278 bits (711), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 137/140 (97%), Positives = 140/140 (100%)

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 140
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

Arabidopsis thaliana (taxid: 3702)
>sp|Q07760|RL23_TOBAC 60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1 Back     alignment and function description
>sp|Q9XEK8|RL23_TORRU 60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1 Back     alignment and function description
>sp|Q6PC14|RL23_DANRE 60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1 Back     alignment and function description
>sp|P62832|RL23_RAT 60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1 Back     alignment and function description
>sp|P62831|RL23_PIG 60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1 Back     alignment and function description
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=1 SV=1 Back     alignment and function description
>sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2 Back     alignment and function description
>sp|P62829|RL23_HUMAN 60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1 Back     alignment and function description
>sp|Q3T057|RL23_BOVIN 60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query140
224065549140 predicted protein [Populus trichocarpa] 1.0 1.0 1.0 5e-74
32400871147 ribosomal Pr 117, partial [Triticum aest 1.0 0.952 1.0 1e-73
115449557140 Os02g0814700 [Oryza sativa Japonica Grou 1.0 1.0 0.992 1e-73
13430182140 ribosomal protein L17 [Castanea sativa] 1.0 1.0 0.992 1e-73
242034221140 hypothetical protein SORBIDRAFT_01g01977 1.0 1.0 0.985 2e-73
351727781140 uncharacterized protein LOC100306699 [Gl 1.0 1.0 0.985 3e-73
449445630140 PREDICTED: 60S ribosomal protein L23-lik 0.992 0.992 0.992 3e-73
116784756140 unknown [Picea sitchensis] gi|116787189| 1.0 1.0 0.985 3e-73
195658145140 60S ribosomal protein L23 [Zea mays] 1.0 1.0 0.985 4e-73
15226102140 60S ribosomal protein L23 [Arabidopsis t 1.0 1.0 0.978 5e-73
>gi|224065549|ref|XP_002301852.1| predicted protein [Populus trichocarpa] gi|224077606|ref|XP_002335793.1| predicted protein [Populus trichocarpa] gi|224102227|ref|XP_002312599.1| predicted protein [Populus trichocarpa] gi|224110634|ref|XP_002315585.1| predicted protein [Populus trichocarpa] gi|357137580|ref|XP_003570378.1| PREDICTED: 60S ribosomal protein L23-like [Brachypodium distachyon] gi|357146533|ref|XP_003574026.1| PREDICTED: 60S ribosomal protein L23-like [Brachypodium distachyon] gi|315113254|pdb|3IZR|M Chain M, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome gi|57471720|gb|AAW50991.1| ribosomal protein L17 [Triticum aestivum] gi|76573329|gb|ABA46769.1| ribosomal protein L17-like protein [Solanum tuberosum] gi|118481489|gb|ABK92687.1| unknown [Populus trichocarpa] gi|118482141|gb|ABK93001.1| unknown [Populus trichocarpa] gi|118483249|gb|ABK93527.1| unknown [Populus trichocarpa] gi|118483257|gb|ABK93531.1| unknown [Populus trichocarpa] gi|118484402|gb|ABK94078.1| unknown [Populus trichocarpa] gi|118487170|gb|ABK95413.1| unknown [Populus trichocarpa] gi|222834818|gb|EEE73267.1| predicted protein [Populus trichocarpa] gi|222843578|gb|EEE81125.1| predicted protein [Populus trichocarpa] gi|222852419|gb|EEE89966.1| predicted protein [Populus trichocarpa] gi|222864625|gb|EEF01756.1| predicted protein [Populus trichocarpa] gi|326507922|dbj|BAJ86704.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
 Score =  281 bits (720), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 140
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|32400871|gb|AAP80667.1|AF479048_1 ribosomal Pr 117, partial [Triticum aestivum] Back     alignment and taxonomy information
>gi|115449557|ref|NP_001048495.1| Os02g0814700 [Oryza sativa Japonica Group] gi|115450623|ref|NP_001048912.1| Os03g0139100 [Oryza sativa Japonica Group] gi|115482426|ref|NP_001064806.1| Os10g0466700 [Oryza sativa Japonica Group] gi|212722212|ref|NP_001132424.1| uncharacterized protein LOC100193874 [Zea mays] gi|212723532|ref|NP_001132737.1| uncharacterized protein LOC100194224 [Zea mays] gi|226494003|ref|NP_001148342.1| 60S ribosomal protein L23 [Zea mays] gi|226532932|ref|NP_001149366.1| 60S ribosomal protein L23 [Zea mays] gi|259490208|ref|NP_001159003.1| 60S ribosomal protein L23 [Zea mays] gi|225433247|ref|XP_002285443.1| PREDICTED: 60S ribosomal protein L23-like [Vitis vinifera] gi|225438001|ref|XP_002273253.1| PREDICTED: 60S ribosomal protein L23 [Vitis vinifera] gi|255571210|ref|XP_002526555.1| 60S ribosomal protein L23, putative [Ricinus communis] gi|255574915|ref|XP_002528364.1| 60S ribosomal protein L23, putative [Ricinus communis] gi|13489168|gb|AAK27802.1|AC022457_5 60S ribosomal protein L17 [Oryza sativa Japonica Group] gi|31432581|gb|AAP54196.1| 60S ribosomal protein L23, putative, expressed [Oryza sativa Japonica Group] gi|47847875|dbj|BAD21668.1| 60S ribosomal protein L17 [Oryza sativa Japonica Group] gi|108706089|gb|ABF93884.1| 60S ribosomal protein L23, putative, expressed [Oryza sativa Japonica Group] gi|113538026|dbj|BAF10409.1| Os02g0814700 [Oryza sativa Japonica Group] gi|113547383|dbj|BAF10826.1| Os03g0139100 [Oryza sativa Japonica Group] gi|113639415|dbj|BAF26720.1| Os10g0466700 [Oryza sativa Japonica Group] gi|125532288|gb|EAY78853.1| hypothetical protein OsI_33956 [Oryza sativa Indica Group] gi|125575086|gb|EAZ16370.1| hypothetical protein OsJ_31833 [Oryza sativa Japonica Group] gi|192910706|gb|ACF06461.1| 60S ribosomal protein L17 [Elaeis guineensis] gi|192910886|gb|ACF06551.1| 60S ribosomal protein L17 [Elaeis guineensis] gi|194694346|gb|ACF81257.1| unknown [Zea mays] gi|195605548|gb|ACG24604.1| 60S ribosomal protein L23 [Zea mays] gi|195607254|gb|ACG25457.1| 60S ribosomal protein L23 [Zea mays] gi|195618084|gb|ACG30872.1| 60S ribosomal protein L23 [Zea mays] gi|195618344|gb|ACG31002.1| 60S ribosomal protein L23 [Zea mays] gi|195622716|gb|ACG33188.1| 60S ribosomal protein L23 [Zea mays] gi|195622784|gb|ACG33222.1| 60S ribosomal protein L23 [Zea mays] gi|195626480|gb|ACG35070.1| 60S ribosomal protein L23 [Zea mays] gi|195626676|gb|ACG35168.1| 60S ribosomal protein L23 [Zea mays] gi|195636706|gb|ACG37821.1| 60S ribosomal protein L23 [Zea mays] gi|195641046|gb|ACG39991.1| 60S ribosomal protein L23 [Zea mays] gi|215767739|dbj|BAG99967.1| unnamed protein product [Oryza sativa Japonica Group] gi|218191803|gb|EEC74230.1| hypothetical protein OsI_09417 [Oryza sativa Indica Group] gi|222623902|gb|EEE58034.1| hypothetical protein OsJ_08852 [Oryza sativa Japonica Group] gi|223532232|gb|EEF34036.1| 60S ribosomal protein L23, putative [Ricinus communis] gi|223534116|gb|EEF35833.1| 60S ribosomal protein L23, putative [Ricinus communis] gi|223946861|gb|ACN27514.1| unknown [Zea mays] gi|284520978|gb|ADB93064.1| 60S ribosomal protein L17 [Jatropha curcas] gi|296083720|emb|CBI23709.3| unnamed protein product [Vitis vinifera] gi|297744205|emb|CBI37175.3| unnamed protein product [Vitis vinifera] gi|313586531|gb|ADR71276.1| 60S ribosomal protein L23A [Hevea brasiliensis] gi|313586533|gb|ADR71277.1| 60S ribosomal protein L23B [Hevea brasiliensis] gi|413924091|gb|AFW64023.1| 60S ribosomal protein L23 [Zea mays] gi|413939450|gb|AFW74001.1| 60S ribosomal protein L23 [Zea mays] gi|413956980|gb|AFW89629.1| 60S ribosomal protein L23 [Zea mays] gi|414864729|tpg|DAA43286.1| TPA: 60S ribosomal protein L23 [Zea mays] Back     alignment and taxonomy information
>gi|13430182|gb|AAK25758.1|AF334838_1 ribosomal protein L17 [Castanea sativa] gi|388492470|gb|AFK34301.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|242034221|ref|XP_002464505.1| hypothetical protein SORBIDRAFT_01g019770 [Sorghum bicolor] gi|242042297|ref|XP_002468543.1| hypothetical protein SORBIDRAFT_01g047680 [Sorghum bicolor] gi|242063474|ref|XP_002453026.1| hypothetical protein SORBIDRAFT_04g036970 [Sorghum bicolor] gi|241918359|gb|EER91503.1| hypothetical protein SORBIDRAFT_01g019770 [Sorghum bicolor] gi|241922397|gb|EER95541.1| hypothetical protein SORBIDRAFT_01g047680 [Sorghum bicolor] gi|241932857|gb|EES06002.1| hypothetical protein SORBIDRAFT_04g036970 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|351727781|ref|NP_001235125.1| uncharacterized protein LOC100306699 [Glycine max] gi|356505056|ref|XP_003521308.1| PREDICTED: 60S ribosomal protein L23-like [Glycine max] gi|356548091|ref|XP_003542437.1| PREDICTED: 60S ribosomal protein L23-like isoform 1 [Glycine max] gi|356548093|ref|XP_003542438.1| PREDICTED: 60S ribosomal protein L23-like isoform 2 [Glycine max] gi|356572286|ref|XP_003554300.1| PREDICTED: 60S ribosomal protein L23-like [Glycine max] gi|255629315|gb|ACU15002.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449445630|ref|XP_004140575.1| PREDICTED: 60S ribosomal protein L23-like [Cucumis sativus] gi|449458864|ref|XP_004147166.1| PREDICTED: 60S ribosomal protein L23-like [Cucumis sativus] gi|449487355|ref|XP_004157585.1| PREDICTED: 60S ribosomal protein L23-like [Cucumis sativus] gi|449498587|ref|XP_004160577.1| PREDICTED: 60S ribosomal protein L23-like [Cucumis sativus] gi|449526191|ref|XP_004170097.1| PREDICTED: 60S ribosomal protein L23-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|116784756|gb|ABK23460.1| unknown [Picea sitchensis] gi|116787189|gb|ABK24404.1| unknown [Picea sitchensis] gi|116792399|gb|ABK26350.1| unknown [Picea sitchensis] gi|148908249|gb|ABR17239.1| unknown [Picea sitchensis] gi|224284703|gb|ACN40083.1| unknown [Picea sitchensis] gi|224285166|gb|ACN40310.1| unknown [Picea sitchensis] gi|224285466|gb|ACN40455.1| unknown [Picea sitchensis] gi|224286055|gb|ACN40739.1| unknown [Picea sitchensis] gi|224286587|gb|ACN40998.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|195658145|gb|ACG48540.1| 60S ribosomal protein L23 [Zea mays] Back     alignment and taxonomy information
>gi|15226102|ref|NP_180895.1| 60S ribosomal protein L23 [Arabidopsis thaliana] gi|15229287|ref|NP_187090.1| 60S ribosomal protein L23 [Arabidopsis thaliana] gi|18390397|ref|NP_563707.1| 60S ribosomal protein L23 [Arabidopsis thaliana] gi|297826791|ref|XP_002881278.1| 60S ribosomal protein L23 [Arabidopsis lyrata subsp. lyrata] gi|297828934|ref|XP_002882349.1| 60S ribosomal protein L23 [Arabidopsis lyrata subsp. lyrata] gi|297843256|ref|XP_002889509.1| 60S ribosomal protein L23 [Arabidopsis lyrata subsp. lyrata] gi|19884121|sp|P49690.3|RL23_ARATH RecName: Full=60S ribosomal protein L23; AltName: Full=Protein EMBRYO DEFECTIVE 2171 gi|2459420|gb|AAB80655.1| 60S ribosomal protein L23 [Arabidopsis thaliana] gi|7547099|gb|AAF63771.1| ribosomal protein L17, putative [Arabidopsis thaliana] gi|14596111|gb|AAK68783.1| 60S ribosomal protein L17 [Arabidopsis thaliana] gi|15450856|gb|AAK96699.1| Strong similarity to 60S ribosomal protein L17 [Arabidopsis thaliana] gi|18377460|gb|AAL66896.1| unknown protein [Arabidopsis thaliana] gi|20148697|gb|AAM10239.1| similar to 60S ribosomal protein L17 [Arabidopsis thaliana] gi|21555625|gb|AAM63901.1| putative 60S ribosomal protein L17 [Arabidopsis thaliana] gi|21593801|gb|AAM65768.1| putative 60S ribosomal protein L17 [Arabidopsis thaliana] gi|98961079|gb|ABF59023.1| At2g33370 [Arabidopsis thaliana] gi|297327117|gb|EFH57537.1| 60S ribosomal protein L23 [Arabidopsis lyrata subsp. lyrata] gi|297328189|gb|EFH58608.1| 60S ribosomal protein L23 [Arabidopsis lyrata subsp. lyrata] gi|297335351|gb|EFH65768.1| 60S ribosomal protein L23 [Arabidopsis lyrata subsp. lyrata] gi|330253730|gb|AEC08824.1| 60S ribosomal protein L23 [Arabidopsis thaliana] gi|332189581|gb|AEE27702.1| 60S ribosomal protein L23 [Arabidopsis thaliana] gi|332640555|gb|AEE74076.1| 60S ribosomal protein L23 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query140
TAIR|locus:2018309140 AT1G04480 [Arabidopsis thalian 1.0 1.0 0.978 7.7e-71
TAIR|locus:2051119140 AT2G33370 [Arabidopsis thalian 1.0 1.0 0.978 7.7e-71
TAIR|locus:2100915140 emb2171 "embryo defective 2171 1.0 1.0 0.978 7.7e-71
ZFIN|ZDB-GENE-030131-8756140 rpl23 "ribosomal protein L23" 0.992 0.992 0.856 1.2e-60
UNIPROTKB|Q3T057140 RPL23 "60S ribosomal protein L 0.992 0.992 0.848 2.4e-60
UNIPROTKB|F2Z4P3140 RPL23 "60S ribosomal protein L 0.992 0.992 0.848 2.4e-60
UNIPROTKB|P62829140 RPL23 "60S ribosomal protein L 0.992 0.992 0.848 2.4e-60
UNIPROTKB|P62831140 RPL23 "60S ribosomal protein L 0.992 0.992 0.848 2.4e-60
MGI|MGI:1929455140 Rpl23 "ribosomal protein L23" 0.992 0.992 0.848 2.4e-60
RGD|62067140 Rpl23 "ribosomal protein L23" 0.992 0.992 0.848 2.4e-60
TAIR|locus:2018309 AT1G04480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 137/140 (97%), Positives = 140/140 (100%)

Query:     1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
             MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct:     1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query:    61 VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
             VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct:    61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query:   121 IGKECADLWPRIASAANAIV 140
             IGKECADLWPRIASAANAIV
Sbjct:   121 IGKECADLWPRIASAANAIV 140
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2051119 AT2G33370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100915 emb2171 "embryo defective 2171" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8756 rpl23 "ribosomal protein L23" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T057 RPL23 "60S ribosomal protein L23" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4P3 RPL23 "60S ribosomal protein L23" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62829 RPL23 "60S ribosomal protein L23" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P62831 RPL23 "60S ribosomal protein L23" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1929455 Rpl23 "ribosomal protein L23" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|62067 Rpl23 "ribosomal protein L23" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A0RVY3RL14_CENSYNo assigned EC number0.51420.97850.9513yesno
Q3T057RL23_BOVINNo assigned EC number0.84890.99280.9928yesno
A8ACD2RL14_IGNH4No assigned EC number0.50.94280.9635yesno
P62832RL23_RATNo assigned EC number0.84890.99280.9928yesno
P62831RL23_PIGNo assigned EC number0.84890.99280.9928yesno
P62830RL23_MOUSENo assigned EC number0.84890.99280.9928yesno
B1L776RL14_KORCONo assigned EC number0.51530.92850.9219yesno
O26121RL14_METTHNo assigned EC number0.55550.90.9545yesno
P14031RL14_METVANo assigned EC number0.53330.85710.9090yesno
A2BMC9RL14_HYPBUNo assigned EC number0.52670.93570.9492yesno
A9A9Q4RL14_METM6No assigned EC number0.5250.85710.9090yesno
Q975J0RL14_SULTONo assigned EC number0.50760.92850.9420yesno
Q6LXE3RL14_METMPNo assigned EC number0.53330.85710.9090yesno
A6VGZ5RL14_METM7No assigned EC number0.53330.85710.9090yesno
Q9YF82RL14_AERPENo assigned EC number0.51421.01.0yesno
Q54G86RL23_DICDINo assigned EC number0.70450.93570.9632yesno
P0CX42RL23B_YEASTNo assigned EC number0.76690.950.9708yesno
P0CX41RL23A_YEASTNo assigned EC number0.76690.950.9708yesno
Q8U009RL14_PYRFUNo assigned EC number0.51771.00.9929yesno
Q9HIR9RL14_THEACNo assigned EC number0.53170.90.9545yesno
P48158RL23_CAEELNo assigned EC number0.76250.99280.9928yesno
P48159RL23_DROMENo assigned EC number0.81290.99280.9928yesno
Q9GNE2RL23_AEDAENo assigned EC number0.82010.99280.9928N/Ano
A4YCX6RL14_METS5No assigned EC number0.54780.82140.8333yesno
P49690RL23_ARATHNo assigned EC number0.97851.01.0yesno
Q94776RL23_TRYCRNo assigned EC number0.67420.92850.9219N/Ano
Q93140RL23_BRUMANo assigned EC number0.77690.99280.9928N/Ano
Q9V1U6RL14_PYRABNo assigned EC number0.50351.00.9929yesno
A4FWB1RL14_METM5No assigned EC number0.5250.85710.9090yesno
P0DJ53RL23_TETTSNo assigned EC number0.67880.97850.9716N/Ano
Q97BW6RL14_THEVONo assigned EC number0.51870.92850.9848yesno
Q07760RL23_TOBACNo assigned EC number0.97851.01.0N/Ano
P54037RL14_METJANo assigned EC number0.57370.87140.9242yesno
Q8TW20RL14_METKANo assigned EC number0.59830.87140.9172yesno
Q90YU5RL23_ICTPUNo assigned EC number0.84890.99280.9928N/Ano
A3DNB7RL14_STAMFNo assigned EC number0.52851.01.0yesno
Q6L1B7RL14_PICTONo assigned EC number0.52380.90.9545yesno
P62829RL23_HUMANNo assigned EC number0.84890.99280.9928yesno
Q9XEK8RL23_TORRUNo assigned EC number0.91420.99281.0N/Ano
Q8SRA7RL23_ENCCUNo assigned EC number0.52750.90710.8698yesno
A5UL78RL14_METS3No assigned EC number0.5280.89280.9469yesno
O42867RL23_SCHPONo assigned EC number0.77370.97850.9856yesno
A6UQ54RL14_METVSNo assigned EC number0.53330.85710.9090yesno
O59427RL14_PYRHONo assigned EC number0.49641.00.9929yesno
Q2NFW7RL14_METSTNo assigned EC number0.5760.89280.9469yesno
O28364RL14_ARCFUNo assigned EC number0.54540.86420.9166yesno
Q6PC14RL23_DANRENo assigned EC number0.85610.99280.9928yesno
Q9XSU3RL23_CANFANo assigned EC number0.84170.99280.9928yesno
A6UWU8RL14_META3No assigned EC number0.54160.85710.9090yesno
Q5REU2RL23_PONABNo assigned EC number0.84170.99280.9928yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query140
PTZ00054139 PTZ00054, PTZ00054, 60S ribosomal protein L23; Pro 1e-89
PRK08571132 PRK08571, rpl14p, 50S ribosomal protein L14P; Revi 3e-59
TIGR03673131 TIGR03673, rpl14p_arch, 50S ribosomal protein L14P 3e-56
COG0093122 COG0093, RplN, Ribosomal protein L14 [Translation, 3e-46
pfam00238122 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L 2e-40
PRK05483122 PRK05483, rplN, 50S ribosomal protein L14; Validat 7e-23
CHL00057122 CHL00057, rpl14, ribosomal protein L14 1e-20
TIGR01067122 TIGR01067, rplN_bact, ribosomal protein L14, bacte 2e-19
>gnl|CDD|185418 PTZ00054, PTZ00054, 60S ribosomal protein L23; Provisional Back     alignment and domain information 
 Score =  256 bits (656), Expect = 1e-89
 Identities = 115/139 (82%), Positives = 128/139 (92%)

Query: 2   SKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMV 61
            KRGRGG  GNKFR++LGLPV A VNCADN+GAKNLYII+VKGI GRLNRLPSA +GDMV
Sbjct: 1   MKRGRGGVGGNKFRVTLGLPVGAVVNCADNSGAKNLYIIAVKGIHGRLNRLPSASLGDMV 60

Query: 62  MATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPI 121
           +ATVKKGKP+LRKKV+ AVI+RQRK WRRKDGVF+YFEDNAGVIVNPKGEMKGSAITGP+
Sbjct: 61  LATVKKGKPELRKKVLNAVIIRQRKAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPV 120

Query: 122 GKECADLWPRIASAANAIV 140
            KECADLWP+I+SAA AIV
Sbjct: 121 AKECADLWPKISSAAPAIV 139

Length = 139
>gnl|CDD|181478 PRK08571, rpl14p, 50S ribosomal protein L14P; Reviewed Back     alignment and domain information
>gnl|CDD|132712 TIGR03673, rpl14p_arch, 50S ribosomal protein L14P Back     alignment and domain information
>gnl|CDD|223171 COG0093, RplN, Ribosomal protein L14 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|201105 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e Back     alignment and domain information
>gnl|CDD|180117 PRK05483, rplN, 50S ribosomal protein L14; Validated Back     alignment and domain information
>gnl|CDD|176997 CHL00057, rpl14, ribosomal protein L14 Back     alignment and domain information
>gnl|CDD|130139 TIGR01067, rplN_bact, ribosomal protein L14, bacterial/organelle Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 140
PTZ00054139 60S ribosomal protein L23; Provisional 100.0
PRK08571132 rpl14p 50S ribosomal protein L14P; Reviewed 100.0
TIGR03673131 rpl14p_arch 50S ribosomal protein L14P. Part of th 100.0
COG0093122 RplN Ribosomal protein L14 [Translation, ribosomal 100.0
CHL00057122 rpl14 ribosomal protein L14 100.0
PRK05483122 rplN 50S ribosomal protein L14; Validated 100.0
TIGR01067122 rplN_bact ribosomal protein L14, bacterial/organel 100.0
PF00238122 Ribosomal_L14: Ribosomal protein L14p/L23e; InterP 100.0
PTZ00320188 ribosomal protein L14; Provisional 100.0
KOG0901145 consensus 60S ribosomal protein L14/L17/L23 [Trans 100.0
KOG3441149 consensus Mitochondrial ribosomal protein L14 [Tra 99.92
>PTZ00054 60S ribosomal protein L23; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-55  Score=336.36  Aligned_cols=137  Identities=83%  Similarity=1.359  Sum_probs=128.7

Q ss_pred             CCCCCCCccccccccCcccccEEEEecCCCCceEEEEEEeccccccCCCCCcccCceEEEEEeecCCCCccceeeEEEEe
Q 032476            4 RGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVR   83 (140)
Q Consensus         4 ~~~~~~~~~~~~~~~mIq~~T~L~V~DNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVr   83 (140)
                      .+.|+..+.++++++|||.+|+|+|+|||||++++||++++.+++.+++++|++||+|+||||++.|..|+|+++|||||
T Consensus         3 ~~~~~~~~~~~~~~~mIq~~t~L~vaDNSGAk~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVKk~~p~~kg~V~kAVIVR   82 (139)
T PTZ00054          3 RGRGGVGGNKFRVTLGLPVGAVVNCADNSGAKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKPELRKKVLNAVIIR   82 (139)
T ss_pred             ccccCccccccccceeecCCCEEEEeeCCCccEEEEEEEeccCcCCccCcccccCCEEEEEEEECCCcccCCEeeEEEEE
Confidence            46778889999999999999999999999999999999998544555667899999999999999998899999999999


Q ss_pred             eeceeeecCCcEEEecCceEEEECCCCCeeeeEEechhhHHHHhhhhhhhhcccccC
Q 032476           84 QRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV  140 (140)
Q Consensus        84 tkk~~~R~dG~~i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k~~Ki~slA~~iv  140 (140)
                      ||++++|+||++++||||||||+|++++|+|||||||||+||+++|+||+|||++++
T Consensus        83 tKk~~rR~dGs~i~F~dNA~VLin~~~~p~GTRI~GpV~rEl~~~~~KI~SLA~~vi  139 (139)
T PTZ00054         83 QRKAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPKISSAAPAIV  139 (139)
T ss_pred             ECcceEcCCCcEEEeCCcEEEEECCCCCEeeeEEeCchhHHHHhCccHhhccccccC
Confidence            999999999999999999999999999999999999999999778999999999875

>PRK08571 rpl14p 50S ribosomal protein L14P; Reviewed Back     alignment and domain information
>TIGR03673 rpl14p_arch 50S ribosomal protein L14P Back     alignment and domain information
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00057 rpl14 ribosomal protein L14 Back     alignment and domain information
>PRK05483 rplN 50S ribosomal protein L14; Validated Back     alignment and domain information
>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle Back     alignment and domain information
>PF00238 Ribosomal_L14: Ribosomal protein L14p/L23e; InterPro: IPR000218 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PTZ00320 ribosomal protein L14; Provisional Back     alignment and domain information
>KOG0901 consensus 60S ribosomal protein L14/L17/L23 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3441 consensus Mitochondrial ribosomal protein L14 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query140
3izr_M140 Localization Of The Large Subunit Ribosomal Protein 7e-77
2zkr_k140 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-65
1s1i_R137 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-58
2x7n_C132 Mechanism Of Eif6s Anti-Association Activity Length 9e-58
3jyw_R131 Structure Of The 60s Proteins For Eukaryotic Riboso 1e-57
3zf7_W139 High-resolution Cryo-electron Microscopy Structure 3e-54
4a17_J141 T.Thermophila 60s Ribosomal Subunit In Complex With 1e-48
3j21_J141 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-33
1s72_K132 Refined Crystal Structure Of The Haloarcula Marismo 1e-29
1ffk_H132 Crystal Structure Of The Large Ribosomal Subunit Fr 4e-29
3bbo_M121 Homology Model For The Spinach Chloroplast 50s Subu 5e-13
1c04_D122 Identification Of Known Protein And Rna Structures 1e-11
2j01_O122 Structure Of The Thermus Thermophilus 70s Ribosome 4e-11
2hgj_N122 Crystal Structure Of The 70s Thermus Thermophilus R 5e-11
1nkw_I134 Crystal Structure Of The Large Ribosomal Subunit Fr 4e-09
1pnu_I132 Crystal Structure Of A Streptomycin Dependent Ribos 4e-09
2gya_I122 Structure Of The 50s Subunit Of A Pre-Translocation 1e-08
1p85_I123 Real Space Refined Coordinates Of The 50s Subunit F 1e-08
3ofq_K122 Crystal Structure Of The E. Coli Ribosome Bound To 1e-08
2wwq_K121 E.Coli 70s Ribosome Stalled During Translation Of T 1e-08
2j28_K121 Model Of E. Coli Srp Bound To 70s Rncs Length = 121 1e-08
>pdb|3IZR|M Chain M, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 140 Back     alignment and structure 
Iteration: 1

 Score =  281 bits (720), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 121 IGKECADLWPRIASAANAIV 140
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140
>pdb|2ZKR|KK Chain k, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 140 Back     alignment and structure
>pdb|1S1I|R Chain R, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 137 Back     alignment and structure
>pdb|2X7N|C Chain C, Mechanism Of Eif6s Anti-Association Activity Length = 132 Back     alignment and structure
>pdb|3JYW|R Chain R, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 131 Back     alignment and structure
>pdb|3ZF7|W Chain W, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 139 Back     alignment and structure
>pdb|4A17|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 141 Back     alignment and structure
>pdb|3J21|J Chain J, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 141 Back     alignment and structure
>pdb|1S72|K Chain K, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 132 Back     alignment and structure
>pdb|1FFK|H Chain H, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 132 Back     alignment and structure
>pdb|3BBO|M Chain M, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 121 Back     alignment and structure
>pdb|1C04|D Chain D, Identification Of Known Protein And Rna Structures In A 5 A Map Of The Large Ribosomal Subunit From Haloarcula Marismortui Length = 122 Back     alignment and structure
>pdb|2J01|O Chain O, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 122 Back     alignment and structure
>pdb|2HGJ|N Chain N, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 122 Back     alignment and structure
>pdb|1NKW|I Chain I, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 134 Back     alignment and structure
>pdb|1PNU|I Chain I, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 132 Back     alignment and structure
>pdb|2GYA|I Chain I, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 122 Back     alignment and structure
>pdb|1P85|I Chain I, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 123 Back     alignment and structure
>pdb|3OFQ|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. Length = 122 Back     alignment and structure
>pdb|2WWQ|K Chain K, E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 50s, The P-Site Trna And The Tnac Leader Peptide (Part 2 Of 2) Length = 121 Back     alignment and structure
>pdb|2J28|K Chain K, Model Of E. Coli Srp Bound To 70s Rncs Length = 121 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query140
3u5e_V137 L17A, YL32, 60S ribosomal protein L23-A; translati 9e-44
1vq8_K132 50S ribosomal protein L14P; ribosome 50S, protein- 9e-40
3bbo_M121 Ribosomal protein L14; large ribosomal subunit, sp 1e-31
1whi_A122 Ribosomal protein L14; rRNA-binding; 1.50A {Geobac 2e-29
3v2d_O122 50S ribosomal protein L14; ribosome associated inh 9e-29
3r8s_K122 50S ribosomal protein L14; protein biosynthesis, R 2e-27
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J Length = 137 Back     alignment and structure
 Score =  139 bits (351), Expect = 9e-44
 Identities = 102/134 (76%), Positives = 119/134 (88%)

Query: 7   GGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVK 66
            G+ G KFR+SLGLPV A +NCADN+GA+NLYII+VKG   RLNRLP+A +GDMVMATVK
Sbjct: 4   NGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVK 63

Query: 67  KGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECA 126
           KGKP+LRKKVMPA++VRQ K WRR+DGVF+YFEDNAGVI NPKGEMKGSAITGP+GKECA
Sbjct: 64  KGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECA 123

Query: 127 DLWPRIASAANAIV 140
           DLWPR+AS +  +V
Sbjct: 124 DLWPRVASNSGVVV 137
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ... Length = 132 Back     alignment and structure
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 121 Back     alignment and structure
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M Length = 122 Back     alignment and structure
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ... Length = 122 Back     alignment and structure
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* 2qao_K* ... Length = 122 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query140
3j21_J141 50S ribosomal protein L14P; archaea, archaeal, KIN 100.0
3u5e_V137 L17A, YL32, 60S ribosomal protein L23-A; translati 100.0
1vq8_K132 50S ribosomal protein L14P; ribosome 50S, protein- 100.0
3v2d_O122 50S ribosomal protein L14; ribosome associated inh 100.0
3bbo_M121 Ribosomal protein L14; large ribosomal subunit, sp 100.0
1whi_A122 Ribosomal protein L14; rRNA-binding; 1.50A {Geobac 100.0
3r8s_K122 50S ribosomal protein L14; protein biosynthesis, R 100.0
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
Probab=100.00  E-value=8.2e-62  Score=369.72  Aligned_cols=140  Identities=52%  Similarity=0.817  Sum_probs=127.7

Q ss_pred             CCCCCCCCCCc-cccccccCcccccEEEEecCCCCceEEEEEEeccccccCCCCCcccCceEEEEEeecCCCCccceeeE
Q 032476            1 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPA   79 (140)
Q Consensus         1 ~~~~~~~~~~~-~~~~~~~mIq~~T~L~V~DNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~Kg~v~~A   79 (140)
                      ||||||||.++ .++++++|||.+|+|+|+|||||++++||+|+++++.++|+++|++||+|++|||++.|+.|+|+++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~kg~V~kA   80 (141)
T 3j21_J            1 MAKKGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRA   80 (141)
T ss_dssp             ---------CCCCCSBCCCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTTTTCEEEE
T ss_pred             CCccccCCccccccccccceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCCcCceEEE
Confidence            89999999998 89999999999999999999999999999999987777788899999999999999999999999999


Q ss_pred             EEEeeeceeeecCCcEEEecCceEEEECCCCCeeeeEEechhhHHHHhhhhhhhhcccccC
Q 032476           80 VIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV  140 (140)
Q Consensus        80 vIVrtkk~~~R~dG~~i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k~~Ki~slA~~iv  140 (140)
                      |||||+++++|+||++++|||||+||||++++|+|||||||||+|||++|+||+|||+.||
T Consensus        81 VIVRtkk~~rR~dGs~i~FddNA~VLin~~g~p~GTRI~GPVarElr~~~~KI~SlA~~iv  141 (141)
T 3j21_J           81 VIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV  141 (141)
T ss_dssp             EEEECSSCEECTTSCEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHHHCHHHHHHCSEEC
T ss_pred             EEEEeCCccCCCCCcEEEcCCcEEEEECCCCCEeeeEEEccccHHHHhhchHHhhcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999986
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J Back     alignment and structure
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ... Back     alignment and structure
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ... Back     alignment and structure
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M Back     alignment and structure
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 140
d1vqok1132 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon 8e-50
d2j01o1122 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus 5e-37
d1whia_122 b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stea 6e-34
d2gyci1121 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escheric 3e-33
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 132 Back     information, alignment and structure

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  153 bits (388), Expect = 8e-50
 Identities = 60/130 (46%), Positives = 84/130 (64%)

Query: 11  GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP 70
                ++ GL   + + CADNTGA+ L +ISV G  G  NRLP A +GD +  +V KG P
Sbjct: 3   ALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTP 62

Query: 71  DLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWP 130
           ++R++V+ AV+VRQRKP RR DG  + FEDNA VIV+   + +G+ + GPI +E A  + 
Sbjct: 63  EMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFG 122

Query: 131 RIASAANAIV 140
            +ASAA  IV
Sbjct: 123 SVASAATMIV 132
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]} Length = 122 Back     information, alignment and structure
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]} Length = 122 Back     information, alignment and structure
>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query140
d1vqok1132 Ribosomal protein L14 {Archaeon Haloarcula marismo 100.0
d1whia_122 Ribosomal protein L14 {Bacillus stearothermophilus 100.0
d2j01o1122 Ribosomal protein L14 {Thermus thermophilus [TaxId 100.0
d2gyci1121 Ribosomal protein L14 {Escherichia coli [TaxId: 56 100.0
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.2e-55  Score=331.00  Aligned_cols=131  Identities=46%  Similarity=0.748  Sum_probs=127.1

Q ss_pred             CccccccccCcccccEEEEecCCCCceEEEEEEeccccccCCCCCcccCceEEEEEeecCCCCccceeeEEEEeeeceee
Q 032476           10 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWR   89 (140)
Q Consensus        10 ~~~~~~~~~mIq~~T~L~V~DNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~Kg~v~~AvIVrtkk~~~   89 (140)
                      .++++++++|||.+|.|+|+|||||+.++||++++++++++++++|.+||+|+||||+..|+.|+++++|||||||++++
T Consensus         2 ~~~~~~~~~~Iq~~s~L~v~DNSGak~v~cI~V~~~~~~k~r~~~a~vGD~IvvsVk~~~~~~k~~v~~AvIVrtkk~~~   81 (132)
T d1vqok1           2 EALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIR   81 (132)
T ss_dssp             CCCSSEECCCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECSSCEE
T ss_pred             ccccccccccccccCEEEEeeCCCCceEEEEEEeccccccccccccccceEEEEEEeecCCCcccceEEEEEEEecCcEE
Confidence            46788999999999999999999999999999999888888889999999999999999999999999999999999999


Q ss_pred             ecCCcEEEecCceEEEECCCCCeeeeEEechhhHHHHhhhhhhhhcccccC
Q 032476           90 RKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV  140 (140)
Q Consensus        90 R~dG~~i~F~~Na~VLln~~~~p~GTRI~GpV~~elr~k~~Ki~slA~~iv  140 (140)
                      |+||++++|||||+||+|++++|+|||||||||+|||++|+||+|||+.||
T Consensus        82 R~dG~~i~FddNa~VLi~~~~~p~GTRI~GpV~~Elr~k~~Ki~sLA~~iv  132 (132)
T d1vqok1          82 RPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV  132 (132)
T ss_dssp             CTTSCEEEESSCEEEEECTTSCBSSSCBCSCBCHHHHHHSHHHHTTCSCBC
T ss_pred             CCCCCEEEcCCCEEEEECCCCCEeeeEEeccHhHHHHhhhhHHHhcccccC
Confidence            999999999999999999999999999999999999999999999999986
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure