Citrus Sinensis ID: 032477

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQMYKATHLTPSSAVHLEIILKTGRVLTLR
Secondary Structure (PSIPRED)
cHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEEEEEccccEEEEcc
Coil and Loop (DISEMBL)
MKQVIDRhnlhsqnlhkfdqpslqlqleSSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQMYkathltpssaVHLEIILKtgrvltlr
Flexible Loop (DISEMBL)
mkqvidrhnlhsqnlhkfdqpslqlqLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSlegglsrvvqtkgerLLNEIDALRRKEAQLTEENLRLKQHGLIQMYKAThltpssavhleiilktgrvltlr
Low Complexity Region (SEG)
MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGeelqelnmeelmrleKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQMYKATHLTPSSAVHLEIILKTGRVLTLR
Disordered region (IsUnstruct)
************************************************************************************L**I*************NLRLKQHGLIQMYKATHLTPSSAVHLEIILKTGRVL***
Disordered Region (DISOPRED)
MKQVIDRHN*********************TYAILSKEMAD*TRE*RQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLR*******************************VL***
Disordered Region (DISEMBL)
MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQMYKATHLTPSSAVHLEIILKTGRVLTLR
Disordered Region (DISPRO)
MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQMYKATHLTPSSAVHLEIILKTGRVLTLR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKxxxxxxxxxxxxxxxxxxxxxxxxxxxxGLIQMYKATHLTPSSAVHLEIILKTGRVLTLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q9FVC1	240	MADS-box protein SVP OS=A	yes	no	0.778	0.454	0.572	3e-28
Q9FUY6	265	MADS-box protein JOINTLES	N/A	no	0.771	0.407	0.559	1e-26
Q5K4R0	246	MADS-box transcription fa	yes	no	0.771	0.439	0.541	1e-22
Q9XJ66	228	MADS-box transcription fa	no	no	0.757	0.464	0.5	1e-22
O82794	220	MADS-box protein AGL24 OS	no	no	0.764	0.486	0.453	2e-20
Q69TG5	245	MADS-box transcription fa	no	no	0.757	0.432	0.410	7e-18
Q7XUN2	249	MADS-box transcription fa	no	no	0.45	0.253	0.476	2e-05
A2RVQ5	240	Agamous-like MADS-box pro	no	no	0.75	0.437	0.342	2e-05
Q6EP49	240	MADS-box transcription fa	no	no	0.75	0.437	0.333	2e-05
Q6EU39	250	MADS-box transcription fa	no	no	0.45	0.252	0.444	0.0001

>sp|Q9FVC1|SVP_ARATH MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 91/110 (82%), Gaps = 1/110 (0%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           MK+V++RHNL S+NL K DQPSL+LQL E+S +A +SKE+AD++  LRQM+GEELQ L++
Sbjct: 62  MKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHG 109
           EEL +LEK+LE GL+RV++TK +++++EI  L++K  QL +EN RL+Q G
Sbjct: 122 EELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQG 171

Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FUY6|JOIN_SOLLC MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 89/109 (81%), Gaps = 1/109 (0%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           MKQ+++R +LHS+NL K DQPSL+LQL E+S Y+ LSKE+++++  LRQM+GEELQ LN+
Sbjct: 62  MKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH 108
           EEL +LE+SLE GLSRV++ KG++++ EI+ L++K   L EEN +L+Q 
Sbjct: 122 EELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQ 170

Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Solanum lycopersicum (taxid: 4081)

>sp|Q5K4R0|MAD47_ORYSJ MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 79/109 (72%), Gaps = 1/109 (0%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLE-SSTYAILSKEMADRTRELRQMKGEELQELNM 59
           M+Q+IDR+N HS+ L + +   L LQ E SST A L +E+A+ +  LRQM+GEEL  LN+
Sbjct: 81  MEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNV 140

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH 108
           E+L  LEKSLE GL  V++TK +++L+EID L RK  QL EENLRLK+ 
Sbjct: 141 EQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQ 189

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XJ66|MAD22_ORYSJ MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 81/106 (76%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           M ++ID++N HS NL K +QPSL L LE S YA L++++A+ +  LRQM+GEEL+ L+++
Sbjct: 62  MNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSID 121

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLK 106
           EL +LEK+LE GL RV+ TK ++ + +I  L+RK +QL EEN++L+
Sbjct: 122 ELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLR 167

Probable transcription factor. May be required for spikelet (rice flower) development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82794|AGL24_ARATH MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 81/108 (75%), Gaps = 1/108 (0%)

Query: 1   MKQVIDRHNLHSQNLHKF-DQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           M+ ++ R++LH+ N++K  D PS  L+LE+   + LSKE+ D+T++LR+++GE+L  LN+
Sbjct: 62  MRDILGRYSLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLNL 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ 107
           EEL RLEK LE GLSRV + KGE ++++I +L ++ ++L +EN RL+ 
Sbjct: 122 EELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVDENKRLRD 169

Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q69TG5|MAD55_ORYSJ MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2

 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 81/129 (62%), Gaps = 23/129 (17%)

Query: 1   MKQVIDRHNLHSQNLHKFD-QPSLQL----------------------QLESSTYAILSK 37
           M ++ID++  HS+NL K D QPS+ L                      QLE S  + L++
Sbjct: 62  MNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNE 121

Query: 38  EMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQ 97
           ++A+ + +LRQM+GEEL+ L++EEL ++EK+LE GL RV+ TK ++ + EI  L+RK  Q
Sbjct: 122 QLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQ 181

Query: 98  LTEENLRLK 106
           L EEN+RL+
Sbjct: 182 LAEENMRLR 190

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 42/63 (66%)

Query: 44  RELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENL 103
           R  R M GE+L  L+++EL +LEK LE  LS+  Q K + ++ ++D LRRKE QL E N 
Sbjct: 107 RSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNK 166

Query: 104 RLK 106
           +LK
Sbjct: 167 QLK 169

Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 54/105 (51%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           MK VI+R++         + P+ ++Q      AIL +++ +     RQM GEEL  L++E
Sbjct: 62  MKSVIERYSDAKGETSSENDPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELSGLSVE 121

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRL 105
            L  LE  LE  L  V   K + L+ EI  L R+   + +ENL L
Sbjct: 122 ALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDL 166

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 53/105 (50%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           MK VIDR+            P+ +L+      A L +++ +     RQ+ GE+L  LN++
Sbjct: 62  MKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVK 121

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRL 105
           EL  LE  LE  L  V   K   L++EI  L RK + + +EN+ L
Sbjct: 122 ELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMEL 166

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EU39|MADS6_ORYSJ MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 42/63 (66%)

Query: 44  RELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENL 103
           R  R + GE+L  L+++EL +LEK LE  LS+  Q K + ++ +++ LRRKE QL E N 
Sbjct: 105 RTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINR 164

Query: 104 RLK 106
           +LK
Sbjct: 165 QLK 167

Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
326415786	193	AGAMOUS-like E 24-like protein 1 [Aquile	0.907	0.658	0.549	2e-31
255545954	161	mads box protein, putative [Ricinus comm	0.821	0.714	0.612	3e-29
224141161	215	predicted protein [Populus trichocarpa]	0.75	0.488	0.619	4e-29
449451385	228	PREDICTED: MADS-box protein SVP-like [Cu	0.778	0.478	0.627	4e-29
375155240	215	SVP4 [Actinidia chinensis]	0.928	0.604	0.552	2e-28
255563302	184	MADS-box transcription factor, putative	0.757	0.576	0.638	2e-28
224141159	169	predicted protein [Populus trichocarpa]	0.75	0.621	0.609	2e-28
33943515	241	short vegetative phase protein [Brassica	0.778	0.452	0.590	2e-28
392522070	241	MADS-box protein SVP [Brassica juncea]	0.778	0.452	0.6	2e-28
118482054	215	unknown [Populus trichocarpa]	0.75	0.488	0.609	3e-28

>gi|326415786|gb|ADZ72840.1| AGAMOUS-like E 24-like protein 1 [Aquilegia formosa]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 103/131 (78%), Gaps = 4/131 (3%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           MK++++RHNLHS+NLHK DQPSL+LQLE+  YA LSKE+A+R+R+LR M+GEELQ LN+E
Sbjct: 31  MKEILERHNLHSKNLHKLDQPSLELQLENGNYARLSKEVAERSRQLRNMRGEELQGLNIE 90

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQMYKATHLT 120
           EL +LEKSLE GLSRV++TK + ++NEI  L+ K A+L EEN RLKQ    +M + + + 
Sbjct: 91  ELQQLEKSLETGLSRVLETKSDWIMNEISTLQAKGAKLMEENERLKQ----KMVEISKVQ 146

Query: 121 PSSAVHLEIIL 131
            + A+  ++++
Sbjct: 147 KNMAIDSDVVV 157

Source: Aquilegia formosa

Species: Aquilegia formosa

Genus: Aquilegia

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545954|ref|XP_002514037.1| mads box protein, putative [Ricinus communis] gi|223547123|gb|EEF48620.1| mads box protein, putative [Ricinus communis]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 91/116 (78%), Gaps = 1/116 (0%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           MK+ I R+NLHS NL K DQPSL+LQLE+S    LSKE+AD+T +LRQM+GE+LQ L++E
Sbjct: 1   MKETITRYNLHSNNLDKLDQPSLELQLENSNNIRLSKEVADKTHQLRQMRGEDLQGLSIE 60

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQMYKA 116
           EL +LEK LE GL+RV+QTKGER++NEI  L +K AQL EEN +LKQ  +I + K 
Sbjct: 61  ELQQLEKMLESGLTRVLQTKGERIMNEISTLEKKGAQLLEENKQLKQK-MIALCKG 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141161|ref|XP_002323943.1| predicted protein [Populus trichocarpa] gi|222866945|gb|EEF04076.1| predicted protein [Populus trichocarpa]

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/105 (61%), Positives = 88/105 (83%)

Query: 3   QVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEEL 62
           QVI+R NLH +NL KF QPS++LQL+S+ +A+L+KE+A++TRELR+ +GE+LQ LNMEEL
Sbjct: 64  QVIERRNLHPKNLDKFSQPSVELQLDSAVHAMLNKEIAEKTRELRRTRGEDLQGLNMEEL 123

Query: 63  MRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ 107
            +LEK +EG L RV++TKGE++L E+DAL+ KE QL EEN RL Q
Sbjct: 124 EKLEKLIEGSLCRVMETKGEKILKEVDALKSKEQQLIEENQRLTQ 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451385|ref|XP_004143442.1| PREDICTED: MADS-box protein SVP-like [Cucumis sativus]

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 90/110 (81%), Gaps = 1/110 (0%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           MK +I+RHNLHS+NL K +QPSL+LQL E+S Y  L+KE+A++T +LRQM+GEELQ LN+
Sbjct: 62  MKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHG 109
           EEL +LEKSLE GLSRV++ KGER++ EI  L+RK A+L +EN RLKQ  
Sbjct: 122 EELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQA 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|375155240|gb|AFA37970.1| SVP4 [Actinidia chinensis]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/134 (55%), Positives = 94/134 (70%), Gaps = 4/134 (2%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           M QVI+RHNL   NL + +QPSL+LQLE+STYA+L  E+ +RTRELRQ++GEEL  L +E
Sbjct: 62  MNQVIERHNLQGDNLVQQNQPSLELQLENSTYAMLCNEVEERTRELRQLRGEELHGLGVE 121

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQMYKATHLT 120
           EL  LEKSLEGGL R+++TK ER   EI AL+RKE +L EENL L+Q   +Q+  A+  T
Sbjct: 122 ELKNLEKSLEGGLGRILKTKDERFEKEITALKRKETRLREENLWLQQR--LQIVNAS--T 177

Query: 121 PSSAVHLEIILKTG 134
           P      E I   G
Sbjct: 178 PEQGQSSESITNNG 191

Source: Actinidia chinensis

Species: Actinidia chinensis

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563302|ref|XP_002522654.1| MADS-box transcription factor, putative [Ricinus communis] gi|223538130|gb|EEF39741.1| MADS-box transcription factor, putative [Ricinus communis]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 89/108 (82%), Gaps = 2/108 (1%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           + QVI+RHNLH +NL + DQPSL+LQLE+ T   LSKE+A++T+ELRQM+GEELQ L+ME
Sbjct: 22  LNQVIERHNLHPRNLGRLDQPSLELQLENCT--ALSKEVAEKTQELRQMRGEELQGLSME 79

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH 108
           EL +LEKSLEGGL RV++TK + + NEI+ L+RK A+L EEN RLKQ 
Sbjct: 80  ELQQLEKSLEGGLKRVMETKDDAITNEINDLKRKGAELMEENERLKQQ 127

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141159|ref|XP_002323942.1| predicted protein [Populus trichocarpa] gi|222866944|gb|EEF04075.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 87/105 (82%)

Query: 3   QVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEEL 62
           QVI+R NLH +NL  F QPS++LQL+S+ +A+L+KE+A++TRELR+ +GE+LQ LNMEEL
Sbjct: 64  QVIERRNLHPKNLDTFSQPSVELQLDSAVHAMLNKEIAEKTRELRRTRGEDLQGLNMEEL 123

Query: 63  MRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ 107
            +LEK +E  L RV++TKGE++L E+DAL+ KE QL EEN RLKQ
Sbjct: 124 EKLEKLIEKSLCRVIETKGEKILKEVDALKSKEHQLIEENQRLKQ 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33943515|gb|AAQ55452.1| short vegetative phase protein [Brassica rapa subsp. campestris]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 94/110 (85%), Gaps = 1/110 (0%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           M++V++RHNL S+NL K DQPSL+LQL E+S +A+LSKE+A+++ +LRQM+GEELQ LN+
Sbjct: 62  MREVLERHNLQSKNLEKLDQPSLELQLVENSDHALLSKEIAEKSHQLRQMRGEELQGLNI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHG 109
           EEL +LEK+LE GL+RV++TK E++++EI  L+RK  +L +EN RL+QHG
Sbjct: 122 EELQQLEKALEAGLTRVIETKSEKIMSEISDLQRKGMKLMDENKRLRQHG 171

Source: Brassica rapa subsp. campestris

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|392522070|gb|AFM77905.1| MADS-box protein SVP [Brassica juncea]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/110 (60%), Positives = 92/110 (83%), Gaps = 1/110 (0%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           M++V++RHNL S+NL K DQPSL+LQL E+S +A+LSKE+A+++  LRQM+GEELQ LN+
Sbjct: 62  MREVLERHNLQSKNLEKLDQPSLELQLVENSDHALLSKEIAEKSHRLRQMRGEELQGLNI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHG 109
           EEL +LEK+LE GL+RV++TK E+++NEI  L+RK  QL +EN RL+Q G
Sbjct: 122 EELQQLEKALEAGLTRVIETKSEKIMNEISYLQRKGMQLMDENKRLRQQG 171

Source: Brassica juncea

Species: Brassica juncea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482054|gb|ABK92958.1| unknown [Populus trichocarpa]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 87/105 (82%)

Query: 3   QVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEEL 62
           QVI+R NLH +NL  F QPS++LQL+S+ +A+L+KE+A++TRELR+ +GE+LQ LNMEEL
Sbjct: 64  QVIERRNLHPKNLDTFSQPSVELQLDSAVHAMLNKEIAEKTRELRRTRGEDLQGLNMEEL 123

Query: 63  MRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ 107
            +LEK +E  L RV++TKGE++L E+DAL+ KE QL EEN RLKQ
Sbjct: 124 EKLEKLIEKSLCRVIETKGEKILKEVDALKSKEHQLIEENQRLKQ 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2041233	240	SVP "AT2G22540" [Arabidopsis t	0.778	0.454	0.481	7.8e-23
UNIPROTKB|Q5K4R0	246	MADS47 "MADS-box transcription	0.95	0.540	0.401	1.1e-18
UNIPROTKB|Q9XJ66	228	MADS22 "MADS-box transcription	0.757	0.464	0.424	1.1e-18
TAIR|locus:2121924	220	AGL24 "AT4G24540" [Arabidopsis	0.921	0.586	0.335	1.3e-15
TAIR|locus:2082618	240	AGL16 "AGAMOUS-like 16" [Arabi	0.75	0.437	0.266	0.00045
TAIR|locus:2121070	228	AGL21 "AT4G37940" [Arabidopsis	0.914	0.561	0.233	0.00052

TAIR|locus:2041233 SVP "AT2G22540" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 53/110 (48%), Positives = 78/110 (70%)

Query:     1 MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGXXXXXXXX 59
             MK+V++RHNL S+NL K DQPSL+LQL E+S +A +SKE+AD++  LRQM+G        
Sbjct:    62 MKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDI 121

Query:    60 XXXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHG 109
                    K+LE GL+RV++TK +++++EI  L++K  QL +EN RL+Q G
Sbjct:   122 EELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQG 171

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048438 "floral whorl development" evidence=IGI

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010076 "maintenance of floral meristem identity" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|Q5K4R0 MADS47 "MADS-box transcription factor 47" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 55/137 (40%), Positives = 80/137 (58%)

Query:     1 MKQVIDRHNLHSQNLHKFDQPSLQLQLE-SSTYAILSKEMADRTRELRQMKGXXXXXXXX 59
             M+Q+IDR+N HS+ L + +   L LQ E SST A L +E+A+ +  LRQM+G        
Sbjct:    81 MEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNV 140

Query:    60 XXXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI-QMYKATH 118
                    KSLE GL  V++TK +++L+EID L RK  QL EENLRLK+   + +M +   
Sbjct:   141 EQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQLQVSRMSRMEE 200

Query:   119 LTPSSAVHLEIILKTGR 135
             + P      EI+ + G+
Sbjct:   201 MQPGP--DSEIVYEEGQ 215

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

UNIPROTKB|Q9XJ66 MADS22 "MADS-box transcription factor 22" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 45/106 (42%), Positives = 68/106 (64%)

Query:     1 MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGXXXXXXXXX 60
             M ++ID++N HS NL K +QPSL L LE S YA L++++A+ +  LRQM+G         
Sbjct:    62 MNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSID 121

Query:    61 XXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLK 106
                   K+LE GL RV+ TK ++ + +I  L+RK +QL EEN++L+
Sbjct:   122 ELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLR 167

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IMP

TAIR|locus:2121924 AGL24 "AT4G24540" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 44/131 (33%), Positives = 78/131 (59%)

Query:     1 MKQVIDRHNLHSQNLHKF-DQPSLQLQLESSTYAILSKEMADRTRELRQMKGXXXXXXXX 59
             M+ ++ R++LH+ N++K  D PS  L+LE+   + LSKE+ D+T++LR+++G        
Sbjct:    62 MRDILGRYSLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLNL 121

Query:    60 XXXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQMYKATHL 119
                    K LE GLSRV + KGE ++++I +L ++ ++L +EN RL+   L  + +A   
Sbjct:   122 EELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVDENKRLRDK-LETLERAKLT 180

Query:   120 TPSSAVHLEII 130
             T   A+  E +
Sbjct:   181 TLKEALETESV 191

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0010220 "positive regulation of vernalization response" evidence=IEP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0000060 "protein import into nucleus, translocation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048438 "floral whorl development" evidence=IGI

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEP

GO:0010076 "maintenance of floral meristem identity" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2082618 AGL16 "AGAMOUS-like 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 92 (37.4 bits), Expect = 0.00045, P = 0.00045
 Identities = 28/105 (26%), Positives = 44/105 (41%)

Query:     1 MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGXXXXXXXXX 60
             MK VI+R++         + P+ ++Q      AIL +++ +     RQM G         
Sbjct:    62 MKSVIERYSDAKGETSSENDPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELSGLSVE 121

Query:    61 XXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRL 105
                     LE  L  V   K + L+ EI  L R+   + +ENL L
Sbjct:   122 ALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDL 166

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010440 "stomatal lineage progression" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2121070 AGL21 "AT4G37940" [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 0.00052, P = 0.00052
 Identities = 32/137 (23%), Positives = 56/137 (40%)

Query:     1 MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGXXXXXXXXX 60
             MK VIDR+N       +   P+ +++      A+L +E+       RQM G         
Sbjct:    62 MKSVIDRYNKSKIEQQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVN 121

Query:    61 XXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENL-------RLKQHGLIQM 113
                     +E  L  +   K + L  EI  L +K   + +ENL       R+ Q   +++
Sbjct:   122 ELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQRIHQEN-VEL 180

Query:   114 YKATHLTPSSA-VHLEI 129
             YK  ++  ++   H E+
Sbjct:   181 YKKAYMANTNGFTHREV 197


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.346    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       125   0.00091  102 3  10 22  0.38    31
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  136 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.87u 0.11s 16.98t   Elapsed:  00:00:01
  Total cpu time:  16.87u 0.11s 16.98t   Elapsed:  00:00:01
  Start:  Sat May 11 06:28:02 2013   End:  Sat May 11 06:28:03 2013

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
pfam01486	100	pfam01486, K-box, K-box region	2e-11

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 56.8 bits (138), Expect = 2e-11
 Identities = 30/64 (46%), Positives = 44/64 (68%)

Query: 44  RELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENL 103
           RE R + GE+L  L+++EL +LE+ LE GL  +   K E LLN+I+ L++KE +L EEN 
Sbjct: 33  REQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKNELLLNQIEELQKKERELQEENR 92

Query: 104 RLKQ 107
            L+Q
Sbjct: 93  NLRQ 96

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.92
KOG0014	195	consensus MADS box transcription factor [Transcrip	97.14
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.36
PRK15422	79	septal ring assembly protein ZapB; Provisional	93.62
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	92.7
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	88.02
PRK13169	110	DNA replication intiation control protein YabA; Re	86.92
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	83.44

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.92  E-value=2e-24  Score=150.04  Aligned_cols=91  Identities=36%  Similarity=0.469  Sum_probs=86.8

Q ss_pred             ChhHHhhhHHHHHHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477           21 PSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTE  100 (140)
Q Consensus        21 ~~~~~~~~~~e~~~L~~e~e~L~~~~R~l~GEdL~~Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~e  100 (140)
                      ...+.+.|..++++|+.+++.|+..+|+|+|+||++||++||++||++|+.||.+||++|+++|+++|+.|++|++.+.+
T Consensus        10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~   89 (100)
T PF01486_consen   10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE   89 (100)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 032477          101 ENLRLKQHGLI  111 (140)
Q Consensus       101 eN~~L~~k~~~  111 (140)
                      +|..|+.++.+
T Consensus        90 en~~L~~~~~e  100 (100)
T PF01486_consen   90 ENNQLRQKIEE  100 (100)
T ss_pred             HHHHHHHHhcC
Confidence            99999999864

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=97.14  E-value=0.00011  Score=55.55  Aligned_cols=72  Identities=32%  Similarity=0.366  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHHHHHHH---HhccCcccCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 032477           28 ESSTYAILSKEMADRTR---ELRQMKGEELQELNM-EELMRLEKSLEGGLSRVVQTKGERLLNEID-ALRRKEAQLT   99 (140)
Q Consensus        28 ~~~e~~~L~~e~e~L~~---~~R~l~GEdL~~Lsl-~EL~~LE~qLe~aL~~IR~rK~qll~e~I~-~Lk~Ke~~L~   99 (140)
                      +......++...+.+..   .+++++|+++.++++ .+|..+|.+++.++..+|..+...+..++. .++.+...+.
T Consensus       112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (195)
T KOG0014|consen  112 KKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLE  188 (195)
T ss_pred             hhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhcc
Confidence            34455667777777764   499999999999999 999999999999999999999998888776 4555444443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.36  E-value=0.015  Score=38.21  Aligned_cols=49  Identities=29%  Similarity=0.425  Sum_probs=36.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032477           57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGL  110 (140)
Q Consensus        57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~  110 (140)
                      +|++-|.+||..+..|+..|     .+|..+++.|+.+...+.++|..|.....
T Consensus         1 M~~E~l~~LE~ki~~aveti-----~~Lq~e~eeLke~n~~L~~e~~~L~~en~   49 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETI-----ALLQMENEELKEKNNELKEENEELKEENE   49 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            57899999999999999999     45666778888886666666666655544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=93.62  E-value=0.61  Score=31.08  Aligned_cols=43  Identities=23%  Similarity=0.420  Sum_probs=35.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477           57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLR  104 (140)
Q Consensus        57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~  104 (140)
                      +|++=|.+||..+..|+..|     .++.-+|++|+.|...|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888999999999999998     67777889998887666665444

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.70  E-value=1.3  Score=29.02  Aligned_cols=46  Identities=22%  Similarity=0.403  Sum_probs=36.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477           57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ  107 (140)
Q Consensus        57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~  107 (140)
                      +|++=|.+||..+..|+..|     .++.-+|++|+.|...|..+-..+..
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~   46 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH   46 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence            57888999999999999998     67777889998887766655554433

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=88.02  E-value=7.2  Score=27.31  Aligned_cols=49  Identities=24%  Similarity=0.265  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032477           59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQ  112 (140)
Q Consensus        59 l~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~  112 (140)
                      ++.+..||+++..-+..|..-|.+     +..|-.....|.-||..|+..+.+.
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK~~-----~~~l~EEN~~L~~EN~~Lr~~l~~~   55 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELKKQ-----LQELLEENARLRIENEHLRERLEEL   55 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999998888887665554     3566666777888888888888764

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=86.92  E-value=6.3  Score=27.84  Aligned_cols=49  Identities=22%  Similarity=0.190  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032477           59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQ  112 (140)
Q Consensus        59 l~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~  112 (140)
                      ++-+.+||+++..-+..+..-|.+     +..+-.....|.-||..|+..+.+.
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~~-----~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKKQ-----LAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467889999999888888665554     4566667777888888888888863

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=83.44  E-value=2.4  Score=26.73  Aligned_cols=29  Identities=34%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             cCcccCCCCCCHHHHHHHHHHHHHHHHHH
Q 032477           48 QMKGEELQELNMEELMRLEKSLEGGLSRV   76 (140)
Q Consensus        48 ~l~GEdL~~Lsl~EL~~LE~qLe~aL~~I   76 (140)
                      +..|+||+.||++||..==..|+.=+.++
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~   40 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARL   40 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHH
Confidence            67899999999999976434444333333

The function of this family is unknown.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	94.76
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	80.88
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	80.83

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=94.76  E-value=0.28  Score=31.99  Aligned_cols=43  Identities=23%  Similarity=0.420  Sum_probs=36.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032477           57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLR  104 (140)
Q Consensus        57 Lsl~EL~~LE~qLe~aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~  104 (140)
                      +|++=|.+||..++.|+..|     .++..+|+.|+.|...|..++..
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999998     67777888888887776665555

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=80.88  E-value=5.8  Score=24.17  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032477           72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLI  111 (140)
Q Consensus        72 aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~  111 (140)
                      |-.+.|.||.+.    +..|..++..|..+|..|...+..
T Consensus        20 AArrsR~RK~~~----~~~Le~~v~~L~~eN~~L~~ev~~   55 (63)
T 2dgc_A           20 AARRSRARKLQR----MKQLEDKVEELLSKNYHLENEVAR   55 (63)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777755    477788888888888888777654

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=80.83  E-value=7  Score=23.47  Aligned_cols=37  Identities=27%  Similarity=0.256  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032477           72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHGLIQ  112 (140)
Q Consensus        72 aL~~IR~rK~qll~e~I~~Lk~Ke~~L~eeN~~L~~k~~~~  112 (140)
                      |..+-|.||.+.    +..|..++..|..+|..|...+...
T Consensus        12 AA~k~R~rKk~~----~~~Le~~v~~L~~~n~~L~~~v~~L   48 (62)
T 1jnm_A           12 AASKSRKRKLER----IARLEEKVKTLKAQNSELASTANML   48 (62)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555667777755    4788888888888888888887654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00