Citrus Sinensis ID: 032500

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCVLPATLNSTRVRHHRIEGKADEGEKKKLTSESNRFTSSNSSSSSSSSPSGTQTRGRSRTRSRRALAPASPLILGPSSS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccccHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccEcccccc
Coil and Loop (DISEMBL)
MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDAcirltgnpipswVNRLARIGFfcncvlpatlnstrvrhhriegkadegekkkltsesnrftssnsssssssspsgtqtrgrsrtrsrralapasplilgpsss
Flexible Loop (DISEMBL)
MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCVLPatlnstrvrhhriegkadegekkkltsesnrftssnsssssssspsgtqtrgrsrtrsrralapasplilgpsss
Low Complexity Region (SEG)
MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCVLPATLNSTRVRHHRIEGKADEGEKKKLtsesnrftssnsssssssspsgtqtrgrsrtrsrrALAPASPLILGPSSS
Disordered region (IsUnstruct)
************LAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCVLPATLNSTRV*******************************************************************
Disordered Region (DISOPRED)
***AEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCVLPATLN***********************************************************************
Disordered Region (DISEMBL)
MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCVLPATLNSTRVRHHRIEGK*********************************************LAPASPLILGPSSS
Disordered Region (DISPRO)
MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCVLPATLNST*********************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCVLPATLNSTRVRHHRIEGKADEGEKKKLTSESNRFTSSNSSSSSSSSPSGTQTRGRSRTRSRRALAPASPLILGPSSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q93VG8	224	DeSI-like protein At4g174	no	no	0.712	0.441	0.434	2e-20
Q5PQ09	192	Desumoylating isopeptidas	N/A	no	0.395	0.286	0.5	1e-10
Q5XIT6	194	Desumoylating isopeptidas	yes	no	0.395	0.283	0.465	2e-10
Q8X1T0	201	DeSI-like protein hag1 OS	yes	no	0.381	0.263	0.490	2e-10
Q9D291	194	Desumoylating isopeptidas	yes	no	0.395	0.283	0.465	2e-10
Q5R456	194	Desumoylating isopeptidas	yes	no	0.395	0.283	0.465	2e-10
Q9BSY9	194	Desumoylating isopeptidas	yes	no	0.395	0.283	0.465	2e-10
A3QRX8	194	Desumoylating isopeptidas	yes	no	0.395	0.283	0.465	2e-10
Q6DC39	196	Desumoylating isopeptidas	no	no	0.395	0.280	0.5	3e-10
Q5ZIV7	193	Desumoylating isopeptidas	no	no	0.395	0.284	0.465	4e-10

>sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 16/115 (13%)

Query: 1   MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
           M  ++ R+ ME L+ +Y G+ Y+LI KNCNHF  + C++LTG PIP W+NRLAR+G FCN
Sbjct: 97  MSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWINRLARVGSFCN 156

Query: 61  CVLPATLNSTRVRH--HRIEGKADEGEKKKLTSESNRFTSSNSSSSSSSSPSGTQ 113
           C+LP ++  T V     R+E  +DE E             SNS +SS S   G++
Sbjct: 157 CLLPESIQLTAVSALPERLE-FSDEDE-------------SNSEASSVSDEEGSE 197

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -

>sp|Q5PQ09|DESI2_XENLA Desumoylating isopeptidase 2 OS=Xenopus laevis GN=desi2 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 3/58 (5%)

Query: 5   EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCV 62
           ++  ++E+L +EYKGNAY+L+ KNCNHF +     L G  IP WVNRLA   +F  CV
Sbjct: 83  DIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRLA---YFSTCV 137

Protease which may deconjugate SUMO from some substrate proteins.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q5XIT6|DESI2_RAT Desumoylating isopeptidase 2 OS=Rattus norvegicus GN=Desi2 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 3/58 (5%)

Query: 5   EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCV 62
           ++  ++E+L +EYKGNAY+L+ KNCNHF +     L G  IP W+NRLA   +F +C+
Sbjct: 84  DIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLA---YFSSCI 138

Protease which may deconjugate SUMO from some substrate proteins.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q8X1T0|HAG1_SCHPO DeSI-like protein hag1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hag1 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 41/53 (77%)

Query: 5   EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGF 57
           +V  ++  L++E+ G +Y+L+ +NCNHF N A I LTG+PIPS++NR++RIG 
Sbjct: 81  DVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIPSFLNRISRIGL 133

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q9D291|DESI2_MOUSE Desumoylating isopeptidase 2 OS=Mus musculus GN=Desi2 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 3/58 (5%)

Query: 5   EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCV 62
           ++  ++E+L +EYKGNAY+L+ KNCNHF +     L G  IP W+NRLA   +F +C+
Sbjct: 84  DIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLA---YFSSCI 138

Protease which may deconjugate SUMO from some substrate proteins.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q5R456|DESI2_PONAB Desumoylating isopeptidase 2 OS=Pongo abelii GN=DESI2 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 3/58 (5%)

Query: 5   EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCV 62
           ++  ++E+L +EYKGNAY+L+ KNCNHF +     L G  IP W+NRLA   +F +C+
Sbjct: 84  DIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLA---YFSSCI 138

Protease which may deconjugate SUMO from some substrate proteins.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q9BSY9|DESI2_HUMAN Desumoylating isopeptidase 2 OS=Homo sapiens GN=DESI2 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 3/58 (5%)

Query: 5   EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCV 62
           ++  ++E+L +EYKGNAY+L+ KNCNHF +     L G  IP W+NRLA   +F +C+
Sbjct: 84  DIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLA---YFSSCI 138

Protease which may deconjugate SUMO from some substrate proteins.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|A3QRX8|DESI2_PIG Desumoylating isopeptidase 2 OS=Sus scrofa GN=DESI2 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 3/58 (5%)

Query: 5   EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCV 62
           ++  ++E+L +EYKGNAY+L+ KNCNHF +     L G  IP W+NRLA   +F +C+
Sbjct: 84  DIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLA---YFSSCI 138

Protease which may deconjugate SUMO from some substrate proteins.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q6DC39|DESI2_DANRE Desumoylating isopeptidase 2 OS=Danio rerio GN=desi2 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 3/58 (5%)

Query: 5   EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCV 62
           +V  ++E++ +EYKGNAY+L+ KNCNHF +     L G  IP WVNRLA   +F +CV
Sbjct: 83  DVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIPRWVNRLA---YFSSCV 137

Protease which may deconjugate SUMO from some substrate proteins.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q5ZIV7|DESI2_CHICK Desumoylating isopeptidase 2 OS=Gallus gallus GN=DESI2 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 3/58 (5%)

Query: 5   EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCV 62
           ++  ++E+L +E+KGNAY+L+ KNCNHF +     L G  IP WVNRLA   +F +C+
Sbjct: 83  DIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRLA---YFSSCI 137

Protease which may deconjugate SUMO from some substrate proteins.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
224053402	219	predicted protein [Populus trichocarpa]	0.956	0.607	0.775	4e-45
224075669	184	predicted protein [Populus trichocarpa]	0.697	0.527	0.855	6e-44
356526246	217	PREDICTED: UPF0326 protein At4g17486-lik	0.942	0.603	0.697	9e-43
255572769	227	conserved hypothetical protein [Ricinus	0.697	0.427	0.814	2e-42
356522294	219	PREDICTED: UPF0326 protein At4g17486-lik	0.956	0.607	0.669	3e-41
225443090	229	PREDICTED: UPF0326 protein At4g17486 [Vi	0.697	0.423	0.787	3e-38
255635760	192	unknown [Glycine max]	0.690	0.5	0.729	7e-38
449436631	1559	PREDICTED: uncharacterized protein LOC10	0.935	0.083	0.664	6e-37
18412886	227	PPPDE putative thiol peptidase family pr	0.992	0.607	0.638	1e-36
297839867	228	hypothetical protein ARALYDRAFT_477178 [	0.992	0.605	0.640	9e-36

>gi|224053402|ref|XP_002297801.1| predicted protein [Populus trichocarpa] gi|222845059|gb|EEE82606.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 107/138 (77%), Positives = 117/138 (84%), Gaps = 5/138 (3%)

Query: 1   MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
           +GP +VR VME+LAE Y+GNAYNLITKNCNHFCNDAC+RLTGNPIPSWVNRLARIGF CN
Sbjct: 86  LGPEQVRGVMEELAEVYRGNAYNLITKNCNHFCNDACVRLTGNPIPSWVNRLARIGFLCN 145

Query: 61  CVLPATLNSTRVRHHRIEGKADEGEKKKLTSESNRFTSSNSSSSSSSSPSGTQTRGRSRT 120
           CVLPA LNSTRV++H+ E KA EGEKKKLTSESNRFTSSNSSSSSSS P         R+
Sbjct: 146 CVLPANLNSTRVQNHKTEDKACEGEKKKLTSESNRFTSSNSSSSSSSPPVVR-----GRS 200

Query: 121 RSRRALAPASPLILGPSS 138
           RSRRAL P+SPLIL  SS
Sbjct: 201 RSRRALQPSSPLILRASS 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075669|ref|XP_002304720.1| predicted protein [Populus trichocarpa] gi|222842152|gb|EEE79699.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 83/97 (85%), Positives = 89/97 (91%)

Query: 1   MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
           +GP EVR +ME+LAE Y GNAYNLITKNCNHFCNDAC+RLTGNPIPSWVNRLARIGF CN
Sbjct: 77  LGPEEVRAMMEELAEVYGGNAYNLITKNCNHFCNDACLRLTGNPIPSWVNRLARIGFLCN 136

Query: 61  CVLPATLNSTRVRHHRIEGKADEGEKKKLTSESNRFT 97
           CVLPA LNSTRV+HH+IE KA EGEKKKLTSESNRFT
Sbjct: 137 CVLPANLNSTRVQHHKIEDKACEGEKKKLTSESNRFT 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526246|ref|XP_003531729.1| PREDICTED: UPF0326 protein At4g17486-like [Glycine max]

 Score =  177 bits (450), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 97/139 (69%), Positives = 111/139 (79%), Gaps = 8/139 (5%)

Query: 1   MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
           MGP EVR VME+LA EY+GNAYNLITKNCNHFCNDAC+RLTGNPIPSWVNRLARIGF CN
Sbjct: 87  MGPCEVRAVMEELAAEYRGNAYNLITKNCNHFCNDACLRLTGNPIPSWVNRLARIGFMCN 146

Query: 61  CVLPATLNSTRVRHHRIEGKADEGEKKKLTSESNRFTSSNSSSSSSSSPSGTQTRGRSRT 120
           CVLP TLNST+VRHH+IE K  E EK+ L SE  +      +SS+SSSP G +     R+
Sbjct: 147 CVLPVTLNSTKVRHHKIEDKQCEEEKQALASEPKKL-----NSSNSSSPKGLRR---GRS 198

Query: 121 RSRRALAPASPLILGPSSS 139
           R+RRAL P+SPLI+G SSS
Sbjct: 199 RTRRALPPSSPLIIGSSSS 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572769|ref|XP_002527317.1| conserved hypothetical protein [Ricinus communis] gi|223533317|gb|EEF35069.1| conserved hypothetical protein [Ricinus communis]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 79/97 (81%), Positives = 88/97 (90%)

Query: 1   MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
           +GPA+VR VME+LA EY+GNAYNLITKNCNHFCNDAC++LTGNPIP+WVNRLARIGF CN
Sbjct: 88  LGPAQVRAVMEELAAEYRGNAYNLITKNCNHFCNDACVKLTGNPIPNWVNRLARIGFLCN 147

Query: 61  CVLPATLNSTRVRHHRIEGKADEGEKKKLTSESNRFT 97
           CVLPA LNST+V HH+IE K DE EKKKLTS SNRFT
Sbjct: 148 CVLPANLNSTKVGHHKIEDKPDETEKKKLTSVSNRFT 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522294|ref|XP_003529782.1| PREDICTED: UPF0326 protein At4g17486-like [Glycine max]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 114/139 (82%), Gaps = 6/139 (4%)

Query: 1   MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
           M P EV+ VME+LA +Y+GNAYNLITKNCNHFCNDAC+RLTGNPIPSWVNRLARIGF CN
Sbjct: 87  MRPGEVKAVMEELAAKYRGNAYNLITKNCNHFCNDACLRLTGNPIPSWVNRLARIGFMCN 146

Query: 61  CVLPATLNSTRVRHHRIEGKADEGEKKKLTSESNRFTSSNSSSSSSSSPSGTQTRGRSRT 120
           CVLP TLNST+VRHH++E K  EGEK+ L +++ + +   +S+SSSSSP G +     R+
Sbjct: 147 CVLPVTLNSTKVRHHKMEEKQCEGEKQALATKAKKLS---ASNSSSSSPEGLRR---GRS 200

Query: 121 RSRRALAPASPLILGPSSS 139
           R+RRAL P+SPLI+G SSS
Sbjct: 201 RNRRALPPSSPLIIGSSSS 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443090|ref|XP_002273525.1| PREDICTED: UPF0326 protein At4g17486 [Vitis vinifera] gi|297743608|emb|CBI36475.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 84/99 (84%), Gaps = 2/99 (2%)

Query: 1   MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
           +GP EVR +M D AEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN
Sbjct: 86  VGPEEVRGIMGDFAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 145

Query: 61  CVLPATLNSTR--VRHHRIEGKADEGEKKKLTSESNRFT 97
           CVLP ++NSTR  +R +  E K DE EKKKL S SNRFT
Sbjct: 146 CVLPLSINSTRISIRPNGREEKVDEVEKKKLRSPSNRFT 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635760|gb|ACU18229.1| unknown [Glycine max]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 70/96 (72%), Positives = 83/96 (86%)

Query: 1   MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
           M P EV+ VME+LA +Y+GNAYNLITKNCNHFCNDAC+RLTGNPIPSWVNRLARIGF CN
Sbjct: 87  MRPGEVKAVMEELAAKYRGNAYNLITKNCNHFCNDACLRLTGNPIPSWVNRLARIGFMCN 146

Query: 61  CVLPATLNSTRVRHHRIEGKADEGEKKKLTSESNRF 96
           CVLP TLNST+VRHH++E K  EGEK+ L +++ + 
Sbjct: 147 CVLPGTLNSTKVRHHKMEEKQCEGEKQALATKAKKL 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436631|ref|XP_004136096.1| PREDICTED: uncharacterized protein LOC101205322 [Cucumis sativus]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 89/134 (66%), Positives = 104/134 (77%), Gaps = 4/134 (2%)

Query: 1   MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
           M P EVR++ME+LA+ YKGNAYNLITKNCNHFCNDACI+LTGN IP+WVNRLARIGF CN
Sbjct: 88  MKPTEVRSLMEELAQIYKGNAYNLITKNCNHFCNDACIKLTGNSIPNWVNRLARIGFLCN 147

Query: 61  CVLPATLNSTRVR-HHRIEGKADEGEKKKLTSESNRFTSSNSSSSSSSSPSGTQTR-GRS 118
           CVLP TLNSTR+R HHRIE K    E KK  +  +  TSS++SSSS++S      R GR+
Sbjct: 148 CVLPVTLNSTRIRHHHRIEDKVVTMEAKKELTSESTKTSSSNSSSSATSSPSLTFRPGRN 207

Query: 119 RTRSRRALAPASPL 132
           RT  RRA  P+SPL
Sbjct: 208 RT--RRAPPPSSPL 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412886|ref|NP_565243.1| PPPDE putative thiol peptidase family protein [Arabidopsis thaliana] gi|21593549|gb|AAM65516.1| unknown [Arabidopsis thaliana] gi|105830048|gb|ABF74712.1| At1g80690 [Arabidopsis thaliana] gi|332198316|gb|AEE36437.1| PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 107/141 (75%), Gaps = 3/141 (2%)

Query: 1   MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
           +GP EVR  ME LA+ YKG++YNLITKNCNHFC++ CI+LTGNPIPSWVNRLARIGF CN
Sbjct: 86  LGPLEVRATMEQLADNYKGSSYNLITKNCNHFCDETCIKLTGNPIPSWVNRLARIGFMCN 145

Query: 61  CVLPATLNSTRVRHHRIEGKAD---EGEKKKLTSESNRFTSSNSSSSSSSSPSGTQTRGR 117
           CVLPAT+N+TR  ++R+        E EKKKLTS S+R  S+ ++ SSSSS    Q RGR
Sbjct: 146 CVLPATINATRFGNNRVNQDKSCEAENEKKKLTSVSSRERSTIATPSSSSSSPSVQVRGR 205

Query: 118 SRTRSRRALAPASPLILGPSS 138
           SR R  RAL P+SPL LG SS
Sbjct: 206 SRKRRPRALQPSSPLTLGSSS 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839867|ref|XP_002887815.1| hypothetical protein ARALYDRAFT_477178 [Arabidopsis lyrata subsp. lyrata] gi|297333656|gb|EFH64074.1| hypothetical protein ARALYDRAFT_477178 [Arabidopsis lyrata subsp. lyrata]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 91/142 (64%), Positives = 107/142 (75%), Gaps = 4/142 (2%)

Query: 1   MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
           +GP EVR  ME LA+ YKG++YNLITKNCNHFC++ CI+LTGNPIPSWVNRLARIGF CN
Sbjct: 86  LGPLEVRATMEQLADNYKGSSYNLITKNCNHFCDETCIKLTGNPIPSWVNRLARIGFMCN 145

Query: 61  CVLPATLNSTRVRHHRIEGKAD---EGEKKKLTSESNRFTSSN-SSSSSSSSPSGTQTRG 116
           CVLPAT+N+TR  ++RI        E EKKKLTS S+R  S+  ++ SSSSS    Q RG
Sbjct: 146 CVLPATINATRFGNNRINQDKSCEAESEKKKLTSVSSRERSTTIATPSSSSSSPSVQVRG 205

Query: 117 RSRTRSRRALAPASPLILGPSS 138
           RSR R  RAL P+SPL LG SS
Sbjct: 206 RSRKRRPRALQPSSPLTLGSSS 227

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2025752	227	AT1G80690 "AT1G80690" [Arabido	0.992	0.607	0.517	3.6e-34
TAIR|locus:2146970	218	AT5G25170 "AT5G25170" [Arabido	0.640	0.408	0.677	9.1e-29
TAIR|locus:2040204	240	AT2G25190 "AT2G25190" [Arabido	0.597	0.345	0.616	3.6e-25
TAIR|locus:2116667	680	AT4G31980 "AT4G31980" [Arabido	0.633	0.129	0.606	6.7e-24
TAIR|locus:2202452	279	AT1G47740 "AT1G47740" [Arabido	0.625	0.311	0.534	4.3e-22
TAIR|locus:2129096	224	AT4G17486 "AT4G17486" [Arabido	0.604	0.375	0.494	5.7e-20
TAIR|locus:2171524	245	AT5G47310 "AT5G47310" [Arabido	0.532	0.302	0.486	7.2e-20
ZFIN|ZDB-GENE-040801-39	196	desi2 "desumoylating isopeptid	0.395	0.280	0.5	3.5e-11
TAIR|locus:2131371	252	AT4G25680 "AT4G25680" [Arabido	0.366	0.202	0.470	4e-11
UNIPROTKB|Q9BSY9	194	DESI2 "Desumoylating isopeptid	0.395	0.283	0.465	4.5e-11

TAIR|locus:2025752 AT1G80690 "AT1G80690" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 73/141 (51%), Positives = 88/141 (62%)

Query:     1 MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
             +GP EVR  ME LA+ YKG++YNLITKNCNHFC++ CI+LTGNPIPSWVNRLARIGF CN
Sbjct:    86 LGPLEVRATMEQLADNYKGSSYNLITKNCNHFCDETCIKLTGNPIPSWVNRLARIGFMCN 145

Query:    61 CVLPATLNSTRVRHHRI-EGKA--DEGEKKKLXXXXXXXXXXXXXXXXXXXXXXXXXXXX 117
             CVLPAT+N+TR  ++R+ + K+   E EKKKL                            
Sbjct:   146 CVLPATINATRFGNNRVNQDKSCEAENEKKKLTSVSSRERSTIATPSSSSSSPSVQVRGR 205

Query:   118 XXXXXXXALAPASPLILGPSS 138
                    AL P+SPL LG SS
Sbjct:   206 SRKRRPRALQPSSPLTLGSSS 226

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2146970 AT5G25170 "AT5G25170" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 61/90 (67%), Positives = 67/90 (74%)

Query:     1 MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
             + P  VR  ME LAEEY GN+Y+LITKNCNHFCND C++LT   IPSWVNRLAR G FCN
Sbjct:    89 LDPENVRVFMEKLAEEYSGNSYHLITKNCNHFCNDVCVQLTRRSIPSWVNRLARFGLFCN 148

Query:    61 CVLPATLNSTRVRHHRI-EGKADEGEKKKL 89
             CVLPA LN T+VR  R  E K  E EKKKL
Sbjct:   149 CVLPAELNETKVRQVRSKEEKIPEVEKKKL 178

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2040204 AT2G25190 "AT2G25190" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 53/86 (61%), Positives = 64/86 (74%)

Query:     5 EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCVLP 64
             EVR  ME LAEEY+GN Y+LIT+NCNHFCN+ C++L    IP WVNRLAR+G  CNCVLP
Sbjct:    92 EVRVFMEKLAEEYQGNKYHLITRNCNHFCNEVCLKLAQKSIPRWVNRLARLGVLCNCVLP 151

Query:    65 ATLNSTRVRHHRI-EGKADEGEKKKL 89
               LN  +VR  R+ +G+  E EKKKL
Sbjct:   152 PRLNEAKVR--RVGKGELSESEKKKL 175

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2116667 AT4G31980 "AT4G31980" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 6.7e-24, P = 6.7e-24
 Identities = 54/89 (60%), Positives = 65/89 (73%)

Query:     1 MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
             M   EVR+ ME L+EEY+GN Y+LIT+NCNHFCN   ++LT   IPSWVNRLAR+GF CN
Sbjct:    88 MKAKEVRSFMEKLSEEYQGNKYHLITRNCNHFCNHVSLKLTHKSIPSWVNRLARLGFLCN 147

Query:    61 CVLPATLNSTRVRHHRIEGKAD-EGEKKK 88
             CVLPA LN T+V+    +GK   EGE  K
Sbjct:   148 CVLPACLNETKVKRVGKDGKLLLEGENTK 176

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2202452 AT1G47740 "AT1G47740" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 47/88 (53%), Positives = 59/88 (67%)

Query:     1 MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
             + P +VR  MED+A  Y GN Y+LI KNCNHFC D C +LTG  IP WVNRLA+IG  C+
Sbjct:   140 LNPTQVREFMEDMACSYYGNMYHLIVKNCNHFCQDVCYKLTGKKIPKWVNRLAQIGSVCS 199

Query:    61 CVLPATLNSTRVRHHRIEGKADEGEKKK 88
             C+LP +L  T V H   +G+  E E +K
Sbjct:   200 CILPESLKITAVCHDP-DGQIPEEENEK 226

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129096 AT4G17486 "AT4G17486" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 43/87 (49%), Positives = 60/87 (68%)

Query:     1 MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
             M  ++ R+ ME L+ +Y G+ Y+LI KNCNHF  + C++LTG PIP W+NRLAR+G FCN
Sbjct:    97 MSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWINRLARVGSFCN 156

Query:    61 CVLPATLNSTRVRH--HRIEGKADEGE 85
             C+LP ++  T V     R+E  +DE E
Sbjct:   157 CLLPESIQLTAVSALPERLEF-SDEDE 182

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2171524 AT5G47310 "AT5G47310" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 36/74 (48%), Positives = 54/74 (72%)

Query:     1 MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCN 60
             M  ++ R+ ME L+ +Y G+ Y+LI KNCNHF  + C+++TG PIP W+NR+AR+G FCN
Sbjct:    99 MSRSDFRSFMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQVTGKPIPGWINRMARVGSFCN 158

Query:    61 CVLPATLNSTRVRH 74
             C+LP ++  + V H
Sbjct:   159 CILPESIQLSSVNH 172

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040801-39 desi2 "desumoylating isopeptidase 2" [Danio rerio (taxid:7955)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query:     5 EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCV 62
             +V  ++E++ +EYKGNAY+L+ KNCNHF +     L G  IP WVNRLA   +F +CV
Sbjct:    83 DVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIPRWVNRLA---YFSSCV 137

GO:0060027 "convergent extension involved in gastrulation" evidence=IGI;IMP

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

TAIR|locus:2131371 AT4G25680 "AT4G25680" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
 Identities = 24/51 (47%), Positives = 34/51 (66%)

Query:     6 VRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIG 56
             V  ++ +L+ E+ G+ Y+L++KNCNHFC+  C RL    IP WVNR A  G
Sbjct:    92 VNQMLRELSREWPGHTYDLLSKNCNHFCDVLCDRLGVPKIPGWVNRFANAG 142

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9BSY9 DESI2 "Desumoylating isopeptidase 2" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query:     5 EVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCV 62
             ++  ++E+L +EYKGNAY+L+ KNCNHF +     L G  IP W+NRLA   +F +C+
Sbjct:    84 DIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLA---YFSSCI 138

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
pfam05903	151	pfam05903, DUF862, PPPDE putative peptidase domain	2e-27

>gnl|CDD|218802 pfam05903, DUF862, PPPDE putative peptidase domain

 Score = 98.6 bits (246), Expect = 2e-27
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 3   PAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGF---FC 59
             E R ++  L+EEY G+ YNLI+KNCNHF ++ C  LTG  IPSW+NRL R      F 
Sbjct: 84  EEEFREILNSLSEEYTGDTYNLISKNCNHFTDELCQFLTGKKIPSWINRLPREVLSTPFG 143

Query: 60  NCVLPA 65
            C+LP 
Sbjct: 144 QCLLPM 149

The PPPDE superfamily (after Permuted Papain fold Peptidases of DsRNA viruses and Eukaryotes), consists of predicted thiol peptidases with a circularly permuted papain-like fold. The inference of the likely DUB function of the PPPDE superfamily proteins is based on the fusions of the catalytic domain to Ub-binding PUG (PUB)/UBA domains and a novel alpha-helical Ub-associated domain (the PUL domain, after PLAP, Ufd3p and Lub1p). Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG0324	214	consensus Uncharacterized conserved protein [Funct	99.97
PF05903	151	Peptidase_C97: PPPDE putative peptidase domain; In	99.88
PF04970	125	LRAT: Lecithin retinol acyltransferase; InterPro:	93.66
PF13387	176	DUF4105: Domain of unknown function (DUF4105)	86.47
PF05608	136	DUF778: Protein of unknown function (DUF778); Inte	84.81
PF09601	173	DUF2459: Protein of unknown function (DUF2459); In	82.59

>KOG0324 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=1.3e-30  Score=212.26  Aligned_cols=94  Identities=50%  Similarity=0.895  Sum_probs=84.3

Q ss_pred             CCHHHHHHHHHHHHhcccCCcccccccccccHHHHHHHHhcCCCCChHHHHhhhhh--hhcccCCCcccccCccccccc-
Q 032500            1 MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIG--FFCNCVLPATLNSTRVRHHRI-   77 (139)
Q Consensus         1 Lt~~ev~~~l~~L~~~f~g~tY~LL~kNCNHFs~~lc~~L~gk~IP~wVnrLA~iG--~~~~ClLP~~~~~tpvg~~~~-   77 (139)
                      +++++|++||++|+++|+|++||||.||||||||++|++|+||+||+||||||++|  ++++|++|.....|++.+... 
T Consensus        85 ~~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~~~~~~~~p~~~~~t~~~~~~~~  164 (214)
T KOG0324|consen   85 LTEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLCSLCNCLLPMLQNLTPVVLASSV  164 (214)
T ss_pred             CCHHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhhhHHhhcchhhhcCCcccccccc
Confidence            57899999999999999999999999999999999999999999999999999999  999999999999999987663 


Q ss_pred             ccc--cchhhhhhhccccc
Q 032500           78 EGK--ADEGEKKKLTSESN   94 (139)
Q Consensus        78 ~~~--~~e~ek~~~rS~~~   94 (139)
                      .++  .++.++++++|..+
T Consensus       165 ~~~~~~~~~~~~~~~s~~s  183 (214)
T KOG0324|consen  165 VERFDEEENSKKKLASSGS  183 (214)
T ss_pred             ccccCccccccccccccCC
Confidence            233  34455888888866

>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences

Probab=99.88  E-value=1.5e-23  Score=160.64  Aligned_cols=67  Identities=43%  Similarity=0.946  Sum_probs=53.6

Q ss_pred             CCHHHHHHHHHHHHhcccCCcccccccccccHHHHHHHHhcCCCCChHHHHhhhhhh---hcccCCCccc
Q 032500            1 MGPAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGF---FCNCVLPATL   67 (139)
Q Consensus         1 Lt~~ev~~~l~~L~~~f~g~tY~LL~kNCNHFs~~lc~~L~gk~IP~wVnrLA~iG~---~~~ClLP~~~   67 (139)
                      +++++|+++|++|+++|.+++||||.||||||+|+||++|+|++||+||||+|+++.   +..|++|..|
T Consensus        82 ~~~~~~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~L~g~~iP~~i~~~a~~~~~~p~~~~l~p~~~  151 (151)
T PF05903_consen   82 LSEEEFEEILRSLSREFTGDSYHLLNRNCNHFSDALCQFLTGKPIPSWINRLARIALSSPFGQMLLPMLW  151 (151)
T ss_dssp             --HHHHHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHHHHHHS----HHHHTHHHHHHTSHHHHHHCC---
T ss_pred             CCHHHHHHHHHHHHhhccCCcchhhhhhhhHHHHHHHHHhCCCCCCHHHHhhhHHhcccchhhhhCcCCC
Confidence            578999999999999999999999999999999999999999999999999999997   5678888643

The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.

>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes

Probab=93.66  E-value=0.028  Score=41.05  Aligned_cols=31  Identities=26%  Similarity=0.468  Sum_probs=17.8

Q ss_pred             HHHHHHHHHhccc-CCcccccccccccHHHHH
Q 032500            6 VRTVMEDLAEEYK-GNAYNLITKNCNHFCNDA   36 (139)
Q Consensus         6 v~~~l~~L~~~f~-g~tY~LL~kNCNHFs~~l   36 (139)
                      .++++++...... ...|||+.+||=||+...
T Consensus        88 ~~~iv~rA~~~lg~~~~Y~l~~nNCEhFa~~c  119 (125)
T PF04970_consen   88 PEEIVERAESRLGKEFEYNLLFNNCEHFATWC  119 (125)
T ss_dssp             HHHHHHHHHHTTT-EESS---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCccCCCcCCHHHHHHHH
Confidence            3445554443333 348999999999998753

It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.

>PF13387 DUF4105: Domain of unknown function (DUF4105)

Probab=86.47  E-value=0.98  Score=35.01  Aligned_cols=47  Identities=23%  Similarity=0.393  Sum_probs=37.7

Q ss_pred             CCHHHHHHHHHHHHhcc----cCCcccccccccccHHHHHHHHhcCCCCCh
Q 032500            1 MGPAEVRTVMEDLAEEY----KGNAYNLITKNCNHFCNDACIRLTGNPIPS   47 (139)
Q Consensus         1 Lt~~ev~~~l~~L~~~f----~g~tY~LL~kNCNHFs~~lc~~L~gk~IP~   47 (139)
                      |+++|.+.++..|.+.-    ..-.||.+..||=.-.-++.....++.++-
T Consensus       105 Ls~ee~~~l~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~~~~l~~  155 (176)
T PF13387_consen  105 LSPEEKQRLFRHLWENANPENRPYRYNFFTDNCATRIRDLLDKARPGSLPL  155 (176)
T ss_pred             CCHHHHHHHHHHHHHhccccccceeehhhhcchHHHHHHHHHHHcCCCeec
Confidence            68999999988886443    445899999999999998888888765543

>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function

Probab=84.81  E-value=1  Score=34.97  Aligned_cols=39  Identities=33%  Similarity=0.582  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHhcccCCcccccccccccHHHHHHHHhc
Q 032500            3 PAEVRTVMEDLAEEYKGNAYNLITKNCNHFCNDACIRLT   41 (139)
Q Consensus         3 ~~ev~~~l~~L~~~f~g~tY~LL~kNCNHFs~~lc~~L~   41 (139)
                      .++.++.|.+-.++|....|+|+..||=+|.-.....+.
T Consensus        76 ~~~wD~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~  114 (136)
T PF05608_consen   76 AESWDDAVQKASEEYKHRMYNLFTDNCHSFVANALNRMR  114 (136)
T ss_pred             HHHHHHHHHHHHHHHhhCceeeeccCcHHHHHHHHHhcc
Confidence            456667777778999999999999999999988887775

>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria

Probab=82.59  E-value=1.9  Score=34.11  Aligned_cols=40  Identities=18%  Similarity=0.394  Sum_probs=30.8

Q ss_pred             CCHHHHHHHHHHHHhcccCC-----------------------cccccccccccHHHHHHHHhc
Q 032500            1 MGPAEVRTVMEDLAEEYKGN-----------------------AYNLITKNCNHFCNDACIRLT   41 (139)
Q Consensus         1 Lt~~ev~~~l~~L~~~f~g~-----------------------tY~LL~kNCNHFs~~lc~~L~   41 (139)
                      |+++|++++++.++..|.-+                       .|||+ ++|||-+++..+...
T Consensus        98 ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~d~Fy~A~G~Y~l~-~TCNtWta~~L~aaG  160 (173)
T PF09601_consen   98 LSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPDDAFYEAKGRYSLF-NTCNTWTARALKAAG  160 (173)
T ss_pred             cCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCCCeeEeeccceEee-cCcHHHHHHHHHHcC
Confidence            57899999999998776643                       46655 799999998766543

Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
3ebq_A	170	Crystal Structure Of Human Pppde1 Length = 170		1e-04
2wp7_A	168	Crystal Structure Of Desumoylase(Duf862) Length = 1		1e-04

>pdb|3EBQ|A Chain A, Crystal Structure Of Human Pppde1 Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 17  YKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRL 52
           ++G AYNL   NCN F N+    LTG  IPS++  L
Sbjct: 98  FRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDL 133

>pdb|2WP7|A Chain A, Crystal Structure Of Desumoylase(Duf862) Length = 168

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 17  YKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRL 52
           ++G AYNL   NCN F N+    LTG  IPS++  L
Sbjct: 96  FRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDL 131

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
2wp7_A	168	PPPDE peptidase domain-containing protein 2; hydro	6e-19

>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A Length = 168

 Score = 77.0 bits (189), Expect = 6e-19
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 1   MGPAEVRTVMEDLAEE-YKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLAR----- 54
           +        +  L E  ++G AYNL   NCN F N+    LTG  IPS++  L       
Sbjct: 79  VTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLST 138

Query: 55  -IGFFCNCVLPATLNSTR 71
             G      L +      
Sbjct: 139 PFGQALRPFLDSIQIQPP 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
2wp7_A	168	PPPDE peptidase domain-containing protein 2; hydro	99.91
4dpz_X	137	HRAS-like suppressor 2; alpha/beta fold, enzyme ph	94.61
4dot_A	140	Group XVI phospholipase A2; alpha/beta fold, phosp	94.4

>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A

Probab=99.91  E-value=6.4e-26  Score=177.50  Aligned_cols=65  Identities=32%  Similarity=0.546  Sum_probs=57.6

Q ss_pred             CCHHHHHHHHHHHHhc-ccCCcccccccccccHHHHHHHHhcCCCCChHHHHhhhhhhhcccCCCcccccCcccccc
Q 032500            1 MGPAEVRTVMEDLAEE-YKGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFFCNCVLPATLNSTRVRHHR   76 (139)
Q Consensus         1 Lt~~ev~~~l~~L~~~-f~g~tY~LL~kNCNHFs~~lc~~L~gk~IP~wVnrLA~iG~~~~ClLP~~~~~tpvg~~~   76 (139)
                      ++++||++||++|+++ |.+++||||.||||||||++|++|+||+||+||||||+           .++.||+|+++
T Consensus        79 ~~~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~-----------~vl~tp~G~~l  144 (168)
T 2wp7_A           79 VTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPS-----------EVLSTPFGQAL  144 (168)
T ss_dssp             CCHHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHH-----------HHHTSHHHHHH
T ss_pred             CCHHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHH-----------HHhcCcHHHHH
Confidence            6899999999999998 99999999999999999999999999999999999554           45555555554

>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A

Probab=94.61  E-value=0.013  Score=44.06  Aligned_cols=32  Identities=28%  Similarity=0.553  Sum_probs=17.3

Q ss_pred             HHHHHHHHHhcccC--CcccccccccccHHHHHHH
Q 032500            6 VRTVMEDLAEEYKG--NAYNLITKNCNHFCNDACI   38 (139)
Q Consensus         6 v~~~l~~L~~~f~g--~tY~LL~kNCNHFs~~lc~   38 (139)
                      .++++++... ..|  ..|+||.+||-||+..+-.
T Consensus        89 ~~~iv~rA~~-~lG~~~~Y~ll~nNCEHFvt~cry  122 (137)
T 4dpz_X           89 SNKIVKRAEE-LVGQELPYSLTSDNCEHFVNHLRY  122 (137)
T ss_dssp             HHHHHHHHHH-HTTCEEC-----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HcCCCcccCcCccChHHHHHHHhc
Confidence            4455555533 334  4899999999999987543

>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}

Probab=94.40  E-value=0.016  Score=43.72  Aligned_cols=43  Identities=23%  Similarity=0.390  Sum_probs=25.1

Q ss_pred             HHHHHHHHHhcccC-CcccccccccccHHHHHHHHhcCCCCChHHHH
Q 032500            6 VRTVMEDLAEEYKG-NAYNLITKNCNHFCNDACIRLTGNPIPSWVNR   51 (139)
Q Consensus         6 v~~~l~~L~~~f~g-~tY~LL~kNCNHFs~~lc~~L~gk~IP~wVnr   51 (139)
                      .++++++....-.- ..|+||.+||-||+..+-.   |+..=.-|..
T Consensus        89 ~~~iv~rA~~~lG~e~~Y~ll~nNCEHFvt~cr~---G~~~S~Qv~~  132 (140)
T 4dot_A           89 CSKIIQRAEELVGQEVLYKLTSENCEHFVNELRY---GVARSDQVRD  132 (140)
T ss_dssp             HHHHHHHHHHTTTCBCSSCCCHHHHHHHHHHHHH---CCC-------
T ss_pred             HHHHHHHHHHHcCCcccccccccChHHHHHHHhc---CCcccchhhh
Confidence            45666665443332 6999999999999987543   6654444433

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00