Citrus Sinensis ID: 032505

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQYFAGEFES
Secondary Structure (PSIPRED)
ccccccccccccEEEEcccccEEEEEEEEccccccccccEEEEEEEccccccccccEEEEEcccccccccccccEEEEcccccccHHHcHHHHHHHHHHHHccccccccccHHHHHHHccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHccccEEEEEccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEcccccEccEccccEEccHHHcccccccccHHHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mslmmsggdlgvsafpegesiFTWIgtieggkgtmyEGLSYklslrfpldypfkppqvkfetmcfhpnvdqygnICLDILqdkwssaydCRTILLSIQSllgepnpesplNSYAAALLNNKEDYRKMVQKQyfagefes
Flexible Loop (DISEMBL)
MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQYFAGEFES
Low Complexity Region (SEG)
MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQYFAGEFES
Disordered region (IsUnstruct)
*************AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL*************AALL*********************
Disordered Region (DISOPRED)
*S*****GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY*******
Disordered Region (DISEMBL)
********DLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQYFAGEFES
Disordered Region (DISPRO)
MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQYFAGEFE*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQYFAGEFES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q9LJZ5	181	Ubiquitin-conjugating enz	yes	no	0.942	0.723	0.719	8e-50
Q54XS6	153	Probable ubiquitin-conjug	yes	no	0.942	0.856	0.651	3e-49
Q8L7T3	180	Ubiquitin-conjugating enz	no	no	0.870	0.672	0.735	3e-48
P56616	179	Ubiquitin-conjugating enz	N/A	no	0.942	0.731	0.666	1e-47
Q32PA5	179	Ubiquitin-conjugating enz	yes	no	0.942	0.731	0.636	5e-45
Q4R9D1	179	Ubiquitin-conjugating enz	N/A	no	0.942	0.731	0.636	5e-45
Q95044	177	Ubiquitin-conjugating enz	N/A	no	0.964	0.757	0.570	1e-44
O00762	179	Ubiquitin-conjugating enz	yes	no	0.942	0.731	0.628	1e-44
Q9D1C1	179	Ubiquitin-conjugating enz	yes	no	0.949	0.737	0.606	1e-44
Q9VTY6	178	Ubiquitin-conjugating enz	yes	no	0.942	0.735	0.606	2e-42

>sp|Q9LJZ5|UBC19_ARATH Ubiquitin-conjugating enzyme E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1

 Score =  195 bits (495), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 95/132 (71%), Positives = 107/132 (81%), Gaps = 1/132 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M LMM G D G+SAFPE ++IF W GTI G K T++EG  Y+LSL F  DYPFK P+VKF
Sbjct: 46  MGLMM-GADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKF 104

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
           ET CFHPNVD YGNICLDILQDKWSSAYD RTILLSIQSLLGEPN  SPLN+ AA L +N
Sbjct: 105 ETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWSN 164

Query: 121 KEDYRKMVQKQY 132
           +E+YRKMV+K Y
Sbjct: 165 QEEYRKMVEKLY 176

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Part of the anaphase-promoting complex (APC). May have a key function during cell cycle and be involved in cyclin B1 degradation.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|Q54XS6|UBE2C_DICDI Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1

 Score =  193 bits (490), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 86/132 (65%), Positives = 112/132 (84%), Gaps = 1/132 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M+LMM G   G+SAFP+G++IF WIGTI+G K T+YE + +K+SL+FP DYP+KPP VKF
Sbjct: 16  MNLMM-GPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKF 74

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
           ET CFHPNVD  GNICLDIL+DKWS  Y+ R++L+SIQSLLGEPN ESPLNSYAA+L +N
Sbjct: 75  ETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSN 134

Query: 121 KEDYRKMVQKQY 132
           +++Y+K++ K+Y
Sbjct: 135 QDEYKKVLDKRY 146

Catalyzes the covalent attachment of ubiquitin to other proteins. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by initiating polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q8L7T3|UBC20_ARATH Ubiquitin-conjugating enzyme E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1

 Score =  189 bits (481), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/121 (73%), Positives = 101/121 (83%)

Query: 12  VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 71
           +SAFPE ++IF W GTI G K T++EG  Y+LSL F  DYPFKPP+VKFET CFHPNVD 
Sbjct: 55  ISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDV 114

Query: 72  YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQ 131
           YGNICLDILQDKWSSAYD RTILLSIQSLLGEPN  SPLN+ AA L +N+E+YRKMV+K 
Sbjct: 115 YGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQEEYRKMVEKL 174

Query: 132 Y 132
           Y
Sbjct: 175 Y 175

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P56616|UBE2C_XENLA Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1

 Score =  187 bits (476), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/132 (66%), Positives = 104/132 (78%), Gaps = 1/132 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M+LMMSG D G+SAFPE +++F WIGTI+G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct: 40  MTLMMSG-DKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
            T CFHPNVD +GNICLDIL+DKWS+ YD RTILLS+QSLLGEPN ESPLN YAA L  N
Sbjct: 99  VTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQN 158

Query: 121 KEDYRKMVQKQY 132
           +  Y+K + +QY
Sbjct: 159 QTAYKKHLHEQY 170

Catalyzes the covalent attachment of ubiquitin to other proteins. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by initiating 'Lys-11'-linked polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q32PA5|UBE2C_BOVIN Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1

 Score =  179 bits (454), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 84/132 (63%), Positives = 102/132 (77%), Gaps = 1/132 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct: 40  MTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
            T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct: 99  LTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

Query: 121 KEDYRKMVQKQY 132
              ++K +Q+ Y
Sbjct: 159 PTAFKKYLQETY 170

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitination. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by initiating 'Lys-11'-linked polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q4R9D1|UBE2C_MACFA Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1

 Score =  179 bits (454), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 84/132 (63%), Positives = 102/132 (77%), Gaps = 1/132 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct: 40  MTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
            T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct: 99  LTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

Query: 121 KEDYRKMVQKQY 132
              ++K +Q+ Y
Sbjct: 159 PTAFKKYLQETY 170

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitination. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by initiating 'Lys-11'-linked polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q95044|UBE2C_SPISO Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1

 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 109/135 (80%), Gaps = 1/135 (0%)

Query: 2   SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFE 61
           +L+MSG D G++AFP+G+++F W+ T++G K T+YE L YKL+L FP DYP+KPP VKF 
Sbjct: 41  TLLMSG-DPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFT 99

Query: 62  TMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK 121
           T C+HPNVDQ GNICLDIL++ W+++YD RTILLS+QSLLGEPN  SPLN+ AA + +N+
Sbjct: 100 TPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQ 159

Query: 122 EDYRKMVQKQYFAGE 136
            +Y+K++ ++Y   +
Sbjct: 160 TEYKKVLHEKYKTAQ 174

Catalyzes the covalent attachment of ubiquitin to other proteins. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that is essential for the transition from metaphase to anaphase in mitosis. Involved in both degradation of proteins responsible for maintaining sister chromatid cohesion at the onset of anaphase and of mitotic cyclins A and B at the exit of mitosis. Acts by initiating polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Spisula solidissima (taxid: 6584)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|O00762|UBE2C_HUMAN Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1

 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/132 (62%), Positives = 102/132 (77%), Gaps = 1/132 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct: 40  MTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
            T C+HPNVD  GNICLDIL++KWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct: 99  LTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

Query: 121 KEDYRKMVQKQY 132
              ++K +Q+ Y
Sbjct: 159 PTAFKKYLQETY 170

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitination. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by initiating 'Lys-11'-linked polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9D1C1|UBE2C_MOUSE Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1

 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 101/132 (76%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           + ++M+ GD G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct: 39  LMILMTSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
            T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct: 99  LTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

Query: 121 KEDYRKMVQKQY 132
              ++K +Q+ Y
Sbjct: 159 PTAFKKYLQETY 170

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitination. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by initiating 'Lys-11'-linked polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9VTY6|UBE2C_DROME Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1

 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 102/132 (77%), Gaps = 1/132 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M+LMM+  + G+SAFP+GE+IF W+GTI G + T+Y G +Y+LSL FP  YP+  P VKF
Sbjct: 42  MNLMMAN-ERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKF 100

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
            T CFHPNVD  G ICLDIL+DKWS+ YD RTILLSIQSLLGEPN ESPLN+ AA + N+
Sbjct: 101 LTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWND 160

Query: 121 KEDYRKMVQKQY 132
           +++Y+K +   Y
Sbjct: 161 QKEYKKYLDAFY 172

Catalyzes the covalent attachment of ubiquitin to other proteins. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by initiating polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
449449354	188	PREDICTED: ubiquitin-conjugating enzyme	0.971	0.718	0.933	4e-70
356535652	186	PREDICTED: ubiquitin-conjugating enzyme	0.978	0.731	0.919	1e-69
225449088	190	PREDICTED: ubiquitin-conjugating enzyme	1.0	0.731	0.892	1e-68
356576213	186	PREDICTED: ubiquitin-conjugating enzyme	0.978	0.731	0.904	2e-68
255585082	188	ubiquitin-conjugating enzyme E2 C, putat	1.0	0.739	0.892	4e-68
224100801	187	predicted protein [Populus trichocarpa]	1.0	0.743	0.885	4e-68
224109742	187	predicted protein [Populus trichocarpa]	1.0	0.743	0.878	1e-67
357443331	192	Ubiquitin carrier protein [Medicago trun	0.978	0.708	0.845	4e-64
294461430	182	unknown [Picea sitchensis]	0.942	0.719	0.795	1e-58
168044035	184	predicted protein [Physcomitrella patens	0.942	0.711	0.772	1e-56

>gi|449449354|ref|XP_004142430.1| PREDICTED: ubiquitin-conjugating enzyme E2 19-like [Cucumis sativus] gi|449487188|ref|XP_004157522.1| PREDICTED: ubiquitin-conjugating enzyme E2 19-like [Cucumis sativus]

 Score =  268 bits (686), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 126/135 (93%), Positives = 130/135 (96%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           MSLMMSGGDLGVSAFP+GESIFTWIGTIEGGKGT YEGLSYKLSL FP++YPFKPP VKF
Sbjct: 49  MSLMMSGGDLGVSAFPDGESIFTWIGTIEGGKGTSYEGLSYKLSLHFPMEYPFKPPLVKF 108

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
           ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL NN
Sbjct: 109 ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNN 168

Query: 121 KEDYRKMVQKQYFAG 135
           KEDYRKMV KQYF+G
Sbjct: 169 KEDYRKMVHKQYFSG 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535652|ref|XP_003536358.1| PREDICTED: ubiquitin-conjugating enzyme E2 19-like [Glycine max]

 Score =  267 bits (682), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 125/136 (91%), Positives = 131/136 (96%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M+LMMSGGDLGVSAFP+GESIFTWIGTIEGGKGT YEGLSYKLSLRFPLDYPFKPPQVKF
Sbjct: 47  MALMMSGGDLGVSAFPDGESIFTWIGTIEGGKGTQYEGLSYKLSLRFPLDYPFKPPQVKF 106

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
           ETMCFHPNVDQ+GNICLDILQDKWSSAYDCRTILLSIQSLL EPN ESPLNSYAAAL N+
Sbjct: 107 ETMCFHPNVDQFGNICLDILQDKWSSAYDCRTILLSIQSLLEEPNLESPLNSYAAALWND 166

Query: 121 KEDYRKMVQKQYFAGE 136
           KEDYR+MV KQYF+GE
Sbjct: 167 KEDYRRMVHKQYFSGE 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449088|ref|XP_002275915.1| PREDICTED: ubiquitin-conjugating enzyme E2 19 [Vitis vinifera] gi|147800943|emb|CAN75562.1| hypothetical protein VITISV_032578 [Vitis vinifera] gi|296086039|emb|CBI31480.3| unnamed protein product [Vitis vinifera]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 125/140 (89%), Positives = 133/140 (95%), Gaps = 1/140 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M+LMMSGGDLGVSAFPE ESIFTWIGTI GG GT+YEGLSYKLSLRFPLDYPFKPPQVKF
Sbjct: 51  MALMMSGGDLGVSAFPESESIFTWIGTIMGGNGTVYEGLSYKLSLRFPLDYPFKPPQVKF 110

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
           ETMCFHPN+DQ+GNICLDILQDKWSSAYDC+T+LLSIQSLLGEPN ESPLNSYAA+L NN
Sbjct: 111 ETMCFHPNIDQFGNICLDILQDKWSSAYDCKTVLLSIQSLLGEPNIESPLNSYAASLWNN 170

Query: 121 KEDYRKMVQKQYFAGE-FES 139
           +EDYRKMV KQYFAGE FES
Sbjct: 171 QEDYRKMVHKQYFAGEAFES 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576213|ref|XP_003556228.1| PREDICTED: ubiquitin-conjugating enzyme E2 19-like [Glycine max]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 123/136 (90%), Positives = 130/136 (95%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M+LMMSGGDLGVSAFP+GESIFTWIGTIEGGKGT+YEGLSYKLSLRFPLDYPFK PQVKF
Sbjct: 47  MTLMMSGGDLGVSAFPDGESIFTWIGTIEGGKGTLYEGLSYKLSLRFPLDYPFKAPQVKF 106

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
           ETMCFHPN+DQ+GNICLDILQDKWSSAYDCRTILLSIQSLL EPN ESPLNSYAAAL N+
Sbjct: 107 ETMCFHPNIDQFGNICLDILQDKWSSAYDCRTILLSIQSLLEEPNLESPLNSYAAALWND 166

Query: 121 KEDYRKMVQKQYFAGE 136
           KEDYR+MV KQYFA E
Sbjct: 167 KEDYRRMVHKQYFARE 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585082|ref|XP_002533247.1| ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis] gi|223526927|gb|EEF29132.1| ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 125/140 (89%), Positives = 131/140 (93%), Gaps = 1/140 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGT YEGLSYKLSLRFPLDYPFKPPQVKF
Sbjct: 49  MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLRFPLDYPFKPPQVKF 108

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
           ET CFHPNVDQ+GNICLDILQ+KWSSAYDCRTILLSIQSLLGEPNP+SPL+SYAA LLNN
Sbjct: 109 ETNCFHPNVDQFGNICLDILQEKWSSAYDCRTILLSIQSLLGEPNPDSPLDSYAAKLLNN 168

Query: 121 KEDYRKMVQKQYFA-GEFES 139
           KE+Y+ MV K Y A G FES
Sbjct: 169 KEEYKTMVHKHYHAGGVFES 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100801|ref|XP_002312020.1| predicted protein [Populus trichocarpa] gi|222851840|gb|EEE89387.1| predicted protein [Populus trichocarpa]

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/140 (88%), Positives = 131/140 (93%), Gaps = 1/140 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           MSLMM GGDLGVSAFPEGESIF WIGTI GGKGT YEGLSYKLSLRFPLDYPFKPPQVKF
Sbjct: 48  MSLMMIGGDLGVSAFPEGESIFAWIGTIMGGKGTAYEGLSYKLSLRFPLDYPFKPPQVKF 107

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
           ETMCFHPNVDQ+GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNP+SPLN+YAA L NN
Sbjct: 108 ETMCFHPNVDQFGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPDSPLNNYAAKLWNN 167

Query: 121 KEDYRKMVQKQYFAGE-FES 139
           +EDY+ MV +QY+AGE FES
Sbjct: 168 EEDYKSMVHRQYYAGEAFES 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109742|ref|XP_002315296.1| predicted protein [Populus trichocarpa] gi|222864336|gb|EEF01467.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 123/140 (87%), Positives = 131/140 (93%), Gaps = 1/140 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           MSLMM GGDLGVSAFPEGESIF WIGTI GG+GT YEGLSYKLSLRFPLDYPFKPPQ+KF
Sbjct: 48  MSLMMIGGDLGVSAFPEGESIFAWIGTIAGGEGTAYEGLSYKLSLRFPLDYPFKPPQIKF 107

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
           ETMCFHPNVDQ+GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNP+SPLNSYAA L +N
Sbjct: 108 ETMCFHPNVDQFGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPDSPLNSYAAELWSN 167

Query: 121 KEDYRKMVQKQYFAGE-FES 139
           KEDY++ V KQY+AGE FES
Sbjct: 168 KEDYKRKVHKQYYAGEAFES 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443331|ref|XP_003591943.1| Ubiquitin carrier protein [Medicago truncatula] gi|355480991|gb|AES62194.1| Ubiquitin carrier protein [Medicago truncatula] gi|388521425|gb|AFK48774.1| unknown [Medicago truncatula]

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/136 (84%), Positives = 126/136 (92%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M+LMMSGGDLGVSAFP+GE+IFTWIGTIEGGKGT YEGLSYKLSL FP +YPFKPPQVKF
Sbjct: 51  MALMMSGGDLGVSAFPDGENIFTWIGTIEGGKGTPYEGLSYKLSLHFPPNYPFKPPQVKF 110

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
           ET CFHPNVDQ+GNICLDILQDKWSSAYDCRT+LLSIQSLL EPN ESPLN+YAA L N+
Sbjct: 111 ETTCFHPNVDQFGNICLDILQDKWSSAYDCRTMLLSIQSLLEEPNLESPLNNYAAELWND 170

Query: 121 KEDYRKMVQKQYFAGE 136
           KED+++MV KQY AGE
Sbjct: 171 KEDFKRMVHKQYLAGE 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294461430|gb|ADE76276.1| unknown [Picea sitchensis]

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 105/132 (79%), Positives = 122/132 (92%), Gaps = 1/132 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M+LMMSG D G+SAFPE +++F+W+GTI GGK T+YEGLSYKLSLRFP+DYPFKPPQVKF
Sbjct: 43  MALMMSG-DPGISAFPESDNMFSWVGTINGGKDTVYEGLSYKLSLRFPVDYPFKPPQVKF 101

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
           ET CFHPNVDQYGNICLDILQDKWSSAY+ RT+LLSIQSLLGEPN ESPLNS+AAA+ NN
Sbjct: 102 ETACFHPNVDQYGNICLDILQDKWSSAYEVRTVLLSIQSLLGEPNNESPLNSHAAAIWNN 161

Query: 121 KEDYRKMVQKQY 132
           +E+++K VQKQY
Sbjct: 162 QEEFKKAVQKQY 173

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168044035|ref|XP_001774488.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674200|gb|EDQ60712.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/132 (77%), Positives = 123/132 (93%), Gaps = 1/132 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           MSLMMSG D G+SAFPEG++IF+WIGTI+G  GT+YEGLSYKL+L+FP DYPFKPP VKF
Sbjct: 46  MSLMMSG-DPGISAFPEGDNIFSWIGTIKGSNGTVYEGLSYKLTLKFPTDYPFKPPVVKF 104

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
           +T+CFHPNVDQ+GNICLDILQDKWSSAYD RT+LLSIQSLLGEPN +SPLNSYAAAL ++
Sbjct: 105 DTLCFHPNVDQFGNICLDILQDKWSSAYDVRTVLLSIQSLLGEPNNDSPLNSYAAALWSD 164

Query: 121 KEDYRKMVQKQY 132
           +E+Y+K+++KQY
Sbjct: 165 QEEYKKVMRKQY 176

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2015819	180	UBC20 "AT1G50490" [Arabidopsis	0.942	0.727	0.727	2.3e-48
TAIR|locus:2087620	181	UBC19 "AT3G20060" [Arabidopsis	0.942	0.723	0.719	2.6e-47
DICTYBASE|DDB_G0278775	153	ube2c "ubiquitin-conjugating e	0.942	0.856	0.651	6.9e-47
UNIPROTKB|P56616	179	ube2c "Ubiquitin-conjugating e	0.942	0.731	0.666	7.1e-45
RGD|1305382	179	Ube2c "ubiquitin-conjugating e	0.942	0.731	0.643	5.7e-43
UNIPROTKB|Q32PA5	179	UBE2C "Ubiquitin-conjugating e	0.942	0.731	0.636	1.2e-42
UNIPROTKB|E2RN95	179	UBE2C "Uncharacterized protein	0.942	0.731	0.636	1.2e-42
UNIPROTKB|F1SC78	179	UBE2C "Uncharacterized protein	0.942	0.731	0.636	1.2e-42
UNIPROTKB|Q4R9D1	179	UBE2C "Ubiquitin-conjugating e	0.942	0.731	0.636	1.2e-42
UNIPROTKB|O00762	179	UBE2C "Ubiquitin-conjugating e	0.942	0.731	0.628	3.2e-42

TAIR|locus:2015819 UBC20 "AT1G50490" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 96/132 (72%), Positives = 108/132 (81%)

Query:     1 MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
             M LMM GG  G+SAFPE ++IF W GTI G K T++EG  Y+LSL F  DYPFKPP+VKF
Sbjct:    45 MGLMMGGGP-GISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKF 103

Query:    61 ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
             ET CFHPNVD YGNICLDILQDKWSSAYD RTILLSIQSLLGEPN  SPLN+ AA L +N
Sbjct:   104 ETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSN 163

Query:   121 KEDYRKMVQKQY 132
             +E+YRKMV+K Y
Sbjct:   164 QEEYRKMVEKLY 175

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEP;RCA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2087620 UBC19 "AT3G20060" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 95/132 (71%), Positives = 107/132 (81%)

Query:     1 MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
             M LMM G D G+SAFPE ++IF W GTI G K T++EG  Y+LSL F  DYPFK P+VKF
Sbjct:    46 MGLMM-GADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKF 104

Query:    61 ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
             ET CFHPNVD YGNICLDILQDKWSSAYD RTILLSIQSLLGEPN  SPLN+ AA L +N
Sbjct:   105 ETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWSN 164

Query:   121 KEDYRKMVQKQY 132
             +E+YRKMV+K Y
Sbjct:   165 QEEYRKMVEKLY 176

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008283 "cell proliferation" evidence=IEP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

DICTYBASE|DDB_G0278775 ube2c "ubiquitin-conjugating enzyme E2" [Dictyostelium discoideum (taxid:44689)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 86/132 (65%), Positives = 112/132 (84%)

Query:     1 MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
             M+LMM G   G+SAFP+G++IF WIGTI+G K T+YE + +K+SL+FP DYP+KPP VKF
Sbjct:    16 MNLMM-GPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKF 74

Query:    61 ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
             ET CFHPNVD  GNICLDIL+DKWS  Y+ R++L+SIQSLLGEPN ESPLNSYAA+L +N
Sbjct:    75 ETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSN 134

Query:   121 KEDYRKMVQKQY 132
             +++Y+K++ K+Y
Sbjct:   135 QDEYKKVLDKRY 146

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

UNIPROTKB|P56616 ube2c "Ubiquitin-conjugating enzyme E2 C" [Xenopus laevis (taxid:8355)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 88/132 (66%), Positives = 104/132 (78%)

Query:     1 MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
             M+LMMSG D G+SAFPE +++F WIGTI+G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct:    40 MTLMMSG-DKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

Query:    61 ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
              T CFHPNVD +GNICLDIL+DKWS+ YD RTILLS+QSLLGEPN ESPLN YAA L  N
Sbjct:    99 VTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQN 158

Query:   121 KEDYRKMVQKQY 132
             +  Y+K + +QY
Sbjct:   159 QTAYKKHLHEQY 170

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0010994 "free ubiquitin chain polymerization" evidence=ISS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0070979 "protein K11-linked ubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

RGD|1305382 Ube2c "ubiquitin-conjugating enzyme E2C" [Rattus norvegicus (taxid:10116)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 85/132 (64%), Positives = 102/132 (77%)

Query:     1 MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
             M+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct:    40 MTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

Query:    61 ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
              T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN ESPLN++AA L  N
Sbjct:    99 LTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIESPLNTHAAELWKN 158

Query:   121 KEDYRKMVQKQY 132
                ++K +Q+ Y
Sbjct:   159 PTAFKKYLQETY 170

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005680 "anaphase-promoting complex" evidence=IEA;ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0008054 "cyclin catabolic process" evidence=IEA;ISO

GO:0010458 "exit from mitosis" evidence=IEA;ISO

GO:0010994 "free ubiquitin chain polymerization" evidence=IEA;ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0031536 "positive regulation of exit from mitosis" evidence=IEA;ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA;ISO

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA;ISO

UNIPROTKB|Q32PA5 UBE2C "Ubiquitin-conjugating enzyme E2 C" [Bos taurus (taxid:9913)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 84/132 (63%), Positives = 102/132 (77%)

Query:     1 MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
             M+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct:    40 MTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

Query:    61 ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
              T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct:    99 LTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

Query:   121 KEDYRKMVQKQY 132
                ++K +Q+ Y
Sbjct:   159 PTAFKKYLQETY 170

GO:0070979 "protein K11-linked ubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0010994 "free ubiquitin chain polymerization" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0031536 "positive regulation of exit from mitosis" evidence=IEA

GO:0008054 "cyclin catabolic process" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2RN95 UBE2C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 84/132 (63%), Positives = 102/132 (77%)

Query:     1 MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
             M+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct:    40 MTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

Query:    61 ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
              T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct:    99 LTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

Query:   121 KEDYRKMVQKQY 132
                ++K +Q+ Y
Sbjct:   159 PTAFKKYLQETY 170

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0031536 "positive regulation of exit from mitosis" evidence=IEA

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0010994 "free ubiquitin chain polymerization" evidence=IEA

GO:0010458 "exit from mitosis" evidence=IEA

GO:0008054 "cyclin catabolic process" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|F1SC78 UBE2C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 84/132 (63%), Positives = 102/132 (77%)

Query:     1 MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
             M+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct:    40 MTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

Query:    61 ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
              T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct:    99 LTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

Query:   121 KEDYRKMVQKQY 132
                ++K +Q+ Y
Sbjct:   159 PTAFKKYLQETY 170

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0031536 "positive regulation of exit from mitosis" evidence=IEA

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0010994 "free ubiquitin chain polymerization" evidence=IEA

GO:0010458 "exit from mitosis" evidence=IEA

GO:0008054 "cyclin catabolic process" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q4R9D1 UBE2C "Ubiquitin-conjugating enzyme E2 C" [Macaca fascicularis (taxid:9541)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 84/132 (63%), Positives = 102/132 (77%)

Query:     1 MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
             M+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct:    40 MTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

Query:    61 ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
              T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct:    99 LTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

Query:   121 KEDYRKMVQKQY 132
                ++K +Q+ Y
Sbjct:   159 PTAFKKYLQETY 170

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0010994 "free ubiquitin chain polymerization" evidence=ISS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

GO:0070979 "protein K11-linked ubiquitination" evidence=ISS

UNIPROTKB|O00762 UBE2C "Ubiquitin-conjugating enzyme E2 C" [Homo sapiens (taxid:9606)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 83/132 (62%), Positives = 102/132 (77%)

Query:     1 MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
             M+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct:    40 MTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

Query:    61 ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
              T C+HPNVD  GNICLDIL++KWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct:    99 LTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

Query:   121 KEDYRKMVQKQY 132
                ++K +Q+ Y
Sbjct:   159 PTAFKKYLQETY 170

GO:0005524 "ATP binding" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0008054 "cyclin catabolic process" evidence=IDA

GO:0007049 "cell cycle" evidence=NAS

GO:0007051 "spindle organization" evidence=NAS

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0010458 "exit from mitosis" evidence=IMP

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0010994 "free ubiquitin chain polymerization" evidence=IDA

GO:0031536 "positive regulation of exit from mitosis" evidence=IMP

GO:0070936 "protein K48-linked ubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051488 "activation of anaphase-promoting complex activity" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00103	UBC11_SCHPO	6, ., 3, ., 2, ., 1, 9	0.5298	0.9424	0.7443	yes	no
P52478	UBC1_CAEEL	6, ., 3, ., 2, ., 1, 9	0.5371	0.8633	0.625	yes	no
Q9VTY6	UBE2C_DROME	6, ., 3, ., 2, ., 1, 9	0.6060	0.9424	0.7359	yes	no
Q9D1C1	UBE2C_MOUSE	6, ., 3, ., 2, ., 1, 9	0.6060	0.9496	0.7374	yes	no
O00762	UBE2C_HUMAN	6, ., 3, ., 2, ., 1, 9	0.6287	0.9424	0.7318	yes	no
Q32PA5	UBE2C_BOVIN	6, ., 3, ., 2, ., 1, 9	0.6363	0.9424	0.7318	yes	no
Q9LJZ5	UBC19_ARATH	6, ., 3, ., 2, ., 1, 9	0.7196	0.9424	0.7237	yes	no
P52492	UBC11_YEAST	6, ., 3, ., 2, ., 1, 9	0.5343	0.9280	0.8269	yes	no
Q54XS6	UBE2C_DICDI	6, ., 3, ., 2, ., 1, 9	0.6515	0.9424	0.8562	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.946
3rd Layer	6.3.2	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	8e-56
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	3e-53
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	4e-51
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	1e-47
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	4e-34
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	9e-32
pfam05773	113	pfam05773, RWD, RWD domain	0.004

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  170 bits (433), Expect = 8e-56
 Identities = 69/133 (51%), Positives = 89/133 (66%), Gaps = 2/133 (1%)

Query: 2   SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFE 61
             ++     G+SAFP  +++F W  TI G +GT YEG  +KL + FP DYPFKPP+VKF 
Sbjct: 7   KELLKDPPPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKPPKVKFT 66

Query: 62  TMCFHPNVDQYGNICLDILQDK-WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-N 119
           T  +HPNVD  G ICLDIL+D+ WS A     +LLSIQSLL EPNPE PLN+ AA L   
Sbjct: 67  TKIYHPNVDPSGEICLDILKDENWSPALTIEQVLLSIQSLLSEPNPEDPLNAEAAKLYRK 126

Query: 120 NKEDYRKMVQKQY 132
           N+E++ K V++  
Sbjct: 127 NREEFEKKVREYV 139

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  163 bits (416), Expect = 3e-53
 Identities = 65/124 (52%), Positives = 83/124 (66%), Gaps = 2/124 (1%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+SA P  E++  W GTI G   T YEG  +KL + FP DYPFKPP+V+F T  +HPNVD
Sbjct: 18  GISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD 77

Query: 71  QYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMV 128
           + G ICL IL    WS AY  RT+LLS+QSLL EPNP  PLN+ AA L   N+E+++K  
Sbjct: 78  ENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKA 137

Query: 129 QKQY 132
           ++  
Sbjct: 138 REWT 141

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  159 bits (404), Expect = 4e-51
 Identities = 69/124 (55%), Positives = 86/124 (69%), Gaps = 2/124 (1%)

Query: 11  GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
           G+SA P  +  +F W  TI G   T YEG  +KL+L FP DYPFKPP+V+F T  FHPNV
Sbjct: 24  GISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNV 83

Query: 70  DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 128
           D  GN+CLDIL+D+WS  Y   TILLS+QSLL  PNP+SPLN+ AA L   +KE+Y K V
Sbjct: 84  DPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKV 143

Query: 129 QKQY 132
           ++  
Sbjct: 144 REWV 147

Length = 153

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  150 bits (380), Expect = 1e-47
 Identities = 69/132 (52%), Positives = 89/132 (67%), Gaps = 4/132 (3%)

Query: 1   MSLMMSGGDLGVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVK 59
             L       G +A+P + E++  W GTI G  GT YEG  +KL++ FP DYPFKPP+VK
Sbjct: 7   KELRKDPPP-GFTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFKPPKVK 65

Query: 60  FETMCFHPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL- 117
           F T  +HPNVD  G ICLDIL Q+KWS A    T+LLS+QSLL EPNP+SPLN+ AA L 
Sbjct: 66  FITKIYHPNVDSSGEICLDILKQEKWSPALTLETVLLSLQSLLSEPNPDSPLNADAAELY 125

Query: 118 LNNKEDYRKMVQ 129
             N+E+++K  +
Sbjct: 126 KKNREEFKKKAR 137

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score =  116 bits (291), Expect = 4e-34
 Identities = 56/118 (47%), Positives = 75/118 (63%), Gaps = 1/118 (0%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+ A P+  +   +   +EG  GT YEG  YKL L  P  YP +PP+V+F T  +HPN+D
Sbjct: 21  GIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNID 80

Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA-LLNNKEDYRKM 127
           + G ICLDIL+DKWS A   RT+LLSIQ+LL  P P+ PL++  A    NN+ D  K+
Sbjct: 81  KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKV 138

Length = 152

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score =  109 bits (274), Expect = 9e-32
 Identities = 53/119 (44%), Positives = 73/119 (61%), Gaps = 1/119 (0%)

Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P  E++F W  +I G   + Y G  + LS+ FP DYPFKPP+V+F T  +HPN++  
Sbjct: 22  SAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81

Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 130
           G+ICLDIL+D+WS A     +LLSI SLL +PNP+ PL    A     N+  Y    ++
Sbjct: 82  GSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATARE 140

Length = 147

>gnl|CDD|218742 pfam05773, RWD, RWD domain

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 40 SYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSS 86
          S  L+   P DYP +PP++           DQ     L  L++    
Sbjct: 51 SLVLTFTLPEDYPDEPPKISLS--SPWLLRDQDKLQLLKELEELAEE 95

This domain was identified in WD40 repeat proteins and Ring finger domain proteins. The function of this domain is unknown. GCN2 is the alpha-subunit of the only translation initiation factor (eIF2 alpha) kinase that appears in all eukaryotes. Its function requires an interaction with GCN1 via the domain at its N-terminus, which is termed the RWD domain after three major RWD-containing proteins: RING finger-containing proteins, WD-repeat-containing proteins, and yeast DEAD (DEXD)-like helicases. The structure forms an alpha + beta sandwich fold consisting of two layers: a four-stranded antiparallel beta-sheet, and three side-by-side alpha-helices. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.95
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	99.93
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.91
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.82
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.68
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.55
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.49
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.65
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	98.56
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	98.46
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	97.08
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	96.38
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	95.18
smart00591	107	RWD domain in RING finger and WD repeat containing	95.06
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	94.66
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	93.76

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-54  Score=301.32  Aligned_cols=135  Identities=43%  Similarity=0.770  Sum_probs=132.3

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|.+ +|++|+++.+.++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+.+|.||+|+|+
T Consensus        12 ~l~~-dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDILk   90 (148)
T KOG0417|consen   12 DLLR-DPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDILK   90 (148)
T ss_pred             HHhc-CCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhhh
Confidence            3566 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      ++|+|+++|.+||++|++||.+||+++|++.++|++|+.| ++|.++||+||++||+
T Consensus        91 ~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~  147 (148)
T KOG0417|consen   91 DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM  147 (148)
T ss_pred             ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999 9999999999999997

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-52  Score=298.28  Aligned_cols=135  Identities=51%  Similarity=0.837  Sum_probs=131.8

Q ss_pred             cccccCCCCCeEEeeCCC-CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      +|++ ++++|+++.|.++ |+++|+++|.||++||||||+|++.|.||++||++||+|+|.++||||||+.+|+||+|+|
T Consensus        16 ~l~~-~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL   94 (153)
T COG5078          16 KLQK-DPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDIL   94 (153)
T ss_pred             HHhc-CCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHH
Confidence            4667 8899999999988 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           81 QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        81 ~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      ++.|+|++++++||.+|+++|.+||.++|+|.+||++|++| ++|.++||+++++||.
T Consensus        95 ~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~  152 (153)
T COG5078          95 KDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE  152 (153)
T ss_pred             hCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999 9999999999999986

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-49  Score=271.74  Aligned_cols=134  Identities=45%  Similarity=0.758  Sum_probs=130.3

Q ss_pred             CcccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            1 MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         1 ~~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      |+|++ +|+.||++.|.++|++.|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+++|||||+.+|.+|+|+|
T Consensus        14 krlqe-dpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiL   92 (152)
T KOG0419|consen   14 KRLQE-DPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDIL   92 (152)
T ss_pred             HHhhc-CCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHH
Confidence            46788 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhh
Q 032505           81 QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAG  135 (139)
Q Consensus        81 ~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~  135 (139)
                      ...|+|+|++.+||++||+||.+||+++|+|.+||++|.++ .+|.++++..+.+.
T Consensus        93 qNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs  148 (152)
T KOG0419|consen   93 QNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS  148 (152)
T ss_pred             hcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999 99999999987663

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=5.9e-49  Score=281.07  Aligned_cols=136  Identities=41%  Similarity=0.681  Sum_probs=132.1

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+++|.||+++|.
T Consensus        13 ~l~~-~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL~   91 (152)
T PTZ00390         13 NLAN-DPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILK   91 (152)
T ss_pred             HHHh-CCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccCc
Confidence            4566 889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      +.|+|++|+++||++|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||.-
T Consensus        92 ~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~  149 (152)
T PTZ00390         92 DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH  149 (152)
T ss_pred             ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999 99999999999999963

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=1.3e-48  Score=277.99  Aligned_cols=135  Identities=39%  Similarity=0.712  Sum_probs=131.5

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++||||+.+|.||+++|.
T Consensus        12 ~l~~-~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il~   90 (147)
T PLN00172         12 DLLK-DPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILR   90 (147)
T ss_pred             HHHh-CCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccCc
Confidence            5667 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      +.|+|++|+++||.+|+++|.+|++++|+|.+||++|.+| ++|.++||+|+++||.
T Consensus        91 ~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~  147 (147)
T PLN00172         91 DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT  147 (147)
T ss_pred             CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999 9999999999999983

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-47  Score=266.92  Aligned_cols=136  Identities=37%  Similarity=0.619  Sum_probs=128.6

Q ss_pred             CcccccCCCCCeEEeeCCC-CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeec
Q 032505            1 MSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI   79 (139)
Q Consensus         1 ~~l~~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~   79 (139)
                      |+|+. +|..|+++...++ |+++|.+.|.||++|+||||.|+..+.||.+||.+||+++|.+++|||||+++|.+|++|
T Consensus        15 k~L~~-~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISI   93 (171)
T KOG0425|consen   15 KELQE-EPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISI   93 (171)
T ss_pred             HHHhc-CCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEe
Confidence            35677 9999999998755 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-------------CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           80 LQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        80 l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      |.             +.|.|.+|+++||++|.+||.+||.++|+|.|||+.|+++ ++|++++++++.+...
T Consensus        94 LH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~e  165 (171)
T KOG0425|consen   94 LHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQE  165 (171)
T ss_pred             ecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence            94             4799999999999999999999999999999999999999 9999999999987643

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-44  Score=249.65  Aligned_cols=135  Identities=38%  Similarity=0.611  Sum_probs=129.2

Q ss_pred             cccccCCCCCeEEeeC-----CCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEe
Q 032505            2 SLMMSGGDLGVSAFPE-----GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC   76 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~-----~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~ic   76 (139)
                      .+++ +.+-|+++.|.     ..|++.|+|.|.|+.||+||||.|++++.||++||.+||+++|.+++|||||+.+|.||
T Consensus        15 ~wrk-~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVc   93 (158)
T KOG0424|consen   15 KWRK-DHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVC   93 (158)
T ss_pred             HHhh-cCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEe
Confidence            4566 88999999996     34899999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCc--CCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           77 LDILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        77 l~~l~~~--W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      |++|.++  |+|+.||.+||..||+||.+||..+|+|.+|..+|.+| .+|+++||.++++||.
T Consensus        94 LsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~  157 (158)
T KOG0424|consen   94 LSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK  157 (158)
T ss_pred             hhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence            9999865  99999999999999999999999999999999999999 9999999999999985

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.3e-44  Score=256.06  Aligned_cols=130  Identities=36%  Similarity=0.615  Sum_probs=127.3

Q ss_pred             CCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCCc
Q 032505            9 DLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSA   87 (139)
Q Consensus         9 ~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~   87 (139)
                      ..||.+...++|+.+.++.|.||+|||||||+|.+.|++|++||++||+|+|.|+||||||.+ +|.||+|++++.|+++
T Consensus        23 q~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~s  102 (200)
T KOG0418|consen   23 QAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKDQWAAS  102 (200)
T ss_pred             hcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhcccchh
Confidence            579999999999999999999999999999999999999999999999999999999999998 9999999999999999


Q ss_pred             ccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           88 YDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        88 ~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      +|++++|++||++|..|++.+|.+..+|+.|.++ +.|.++||.||.+||-.
T Consensus       103 lTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~  154 (200)
T KOG0418|consen  103 LTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG  154 (200)
T ss_pred             hhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999 99999999999999964

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-43  Score=244.26  Aligned_cols=133  Identities=63%  Similarity=1.102  Sum_probs=127.0

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      .|++ ...+||++.|++||++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|++||||||..|.||+|||+
T Consensus        40 ~Lmm-s~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILk  118 (175)
T KOG0421|consen   40 GLMM-SNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILK  118 (175)
T ss_pred             HHHh-cCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHH
Confidence            4566 778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhchHHHHHHHHHHHHhh
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQYFAG  135 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~~~f~~~~r~~~~~~  135 (139)
                      +.|+..|.+++||++||+||-+||.++|+|..||.++.+.++|++.+.+..++.
T Consensus       119 dKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~d~~eykk~l~~~Y~~~  172 (175)
T KOG0421|consen  119 DKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWSDQEEYKKYLEALYKEI  172 (175)
T ss_pred             HHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhcCHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999994499999999887764

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=4.6e-43  Score=247.32  Aligned_cols=130  Identities=49%  Similarity=0.857  Sum_probs=119.1

Q ss_pred             cccccCCCCCeEEeeCCC-CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      +|++ +++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.||+++|
T Consensus         8 ~l~~-~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l   86 (140)
T PF00179_consen    8 ELQK-NPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDIL   86 (140)
T ss_dssp             HHHH-SHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGG
T ss_pred             HHhh-CCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccccchhhhh
Confidence            4556 8999999999886 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-cCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHH
Q 032505           81 QD-KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQY  132 (139)
Q Consensus        81 ~~-~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~  132 (139)
                      .. .|+|++++.+||.+|+++|.+|+.++|+|.+|+++|+++ ++|.++||+|.
T Consensus        87 ~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~  140 (140)
T PF00179_consen   87 NPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA  140 (140)
T ss_dssp             TTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred             hcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence            85 599999999999999999999999999999999999999 99999999984

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=4.2e-42  Score=242.75  Aligned_cols=130  Identities=50%  Similarity=0.877  Sum_probs=125.4

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|.||++++.
T Consensus        10 ~l~~-~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l~   88 (141)
T cd00195          10 DLKK-DPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILK   88 (141)
T ss_pred             HHHh-CCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhcC
Confidence            4666 888999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Cc-CCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHH
Q 032505           82 DK-WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQY  132 (139)
Q Consensus        82 ~~-W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~  132 (139)
                      .. |+|++++.+||.+|+++|.+|+.++|+|.+||.+|++| ++|.++|++++
T Consensus        89 ~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~  141 (141)
T cd00195          89 THGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT  141 (141)
T ss_pred             CCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence            77 99999999999999999999999999999999999999 99999999874

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=100.00  E-value=1.5e-41  Score=240.91  Aligned_cols=134  Identities=51%  Similarity=0.883  Sum_probs=128.5

Q ss_pred             cccccCCCCCeEEeeCCC-CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      ++++ ++++|+++.+..+ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.++++||||+++|.||++++
T Consensus         9 ~~~~-~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l   87 (145)
T smart00212        9 ELLK-DPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDIL   87 (145)
T ss_pred             HHHh-CCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhc
Confidence            4556 8888999999875 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C-CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505           81 Q-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE  136 (139)
Q Consensus        81 ~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a  136 (139)
                      . ++|+|++++.+||.+|+++|.+|+.++|+|.+||++|.++ +.|.++|++++++++
T Consensus        88 ~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~  145 (145)
T smart00212       88 KQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA  145 (145)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            8 8999999999999999999999999999999999999999 999999999999874

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-41  Score=231.89  Aligned_cols=133  Identities=35%  Similarity=0.670  Sum_probs=127.0

Q ss_pred             CcccccCCCCCeEEeeC-CCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeec
Q 032505            1 MSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI   79 (139)
Q Consensus         1 ~~l~~~~~~~gi~~~p~-~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~   79 (139)
                      |||.. ++|+||.+.|. ++|+++|.|.|.||++|+|+||+|..++.||.+||.+||+++|...+|||||+.+|+||+++
T Consensus        14 kqLt~-~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISI   92 (165)
T KOG0426|consen   14 KQLTL-NPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISI   92 (165)
T ss_pred             HHHcc-CCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEE
Confidence            46777 99999999996 67999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-------------CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHh
Q 032505           80 LQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFA  134 (139)
Q Consensus        80 l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~  134 (139)
                      |.             +.|+|.++++.||+++.+||.+||.++++|.+|+.++++| ++|.+.||..+.+
T Consensus        93 LHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrK  161 (165)
T KOG0426|consen   93 LHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRK  161 (165)
T ss_pred             eeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHH
Confidence            94             5799999999999999999999999999999999999999 9999999998876

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-38  Score=223.28  Aligned_cols=129  Identities=33%  Similarity=0.591  Sum_probs=122.2

Q ss_pred             CCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCCcc
Q 032505           10 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAY   88 (139)
Q Consensus        10 ~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~~   88 (139)
                      .+..|...++++++++|.+.||.+||||||++++++.+|++||++.|.|.|.++||||||++ +|.||+|.++.-|+|-+
T Consensus        18 s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~y   97 (189)
T KOG0416|consen   18 SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLY   97 (189)
T ss_pred             cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHH
Confidence            46667778889999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             cHHHHHHH-HHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           89 DCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        89 ~i~~iL~~-i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      .+..|+.. |-.||..||+.+|+|.+||.+|.++ +.|.+++|+++++||.+
T Consensus        98 DL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~  149 (189)
T KOG0416|consen   98 DLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP  149 (189)
T ss_pred             HHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence            99998754 5788999999999999999999999 99999999999999986

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.6e-37  Score=217.02  Aligned_cols=131  Identities=32%  Similarity=0.579  Sum_probs=119.0

Q ss_pred             CCCCCeEEe--eCCCCce--EEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCCC
Q 032505            7 GGDLGVSAF--PEGESIF--TWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD   82 (139)
Q Consensus         7 ~~~~gi~~~--p~~~~~~--~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~   82 (139)
                      +-|++++..  ...+++.  +.+++|. |+++.|+||.|.|.+++|+.||+.||+|+|+|+||||||+.+|.||++||++
T Consensus        41 nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRe  119 (184)
T KOG0420|consen   41 NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILRE  119 (184)
T ss_pred             cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHh
Confidence            345566532  1234444  5999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           83 KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        83 ~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      +|+|+.++.+|+..|+.||.+|++++|+|.+||.++++| +.|...||.....++.+
T Consensus       120 dW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v~  176 (184)
T KOG0420|consen  120 DWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCVG  176 (184)
T ss_pred             cCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCccC
Confidence            999999999999999999999999999999999999999 99999999999988765

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-35  Score=204.22  Aligned_cols=124  Identities=28%  Similarity=0.612  Sum_probs=118.2

Q ss_pred             EeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC-CcCCCcccHHH
Q 032505           14 AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSAYDCRT   92 (139)
Q Consensus        14 ~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~-~~W~p~~~i~~   92 (139)
                      +..++.|++.|++.|. |.+-||..|.|+++|.||.+|||+||++.|.|+|||||||+.|.+|+.++. ++|.|+.+.++
T Consensus        25 ~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis~EnWkP~T~teq  103 (153)
T KOG0422|consen   25 IEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIISAENWKPATRTEQ  103 (153)
T ss_pred             hhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeeecccccCcccHHH
Confidence            3345789999999999 999999999999999999999999999999999999999999999999885 89999999999


Q ss_pred             HHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           93 ILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        93 iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      ||++|.+++.+|+++.|++.|+|..|.+| ..|.++|.++|++|+..
T Consensus       104 VlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~  150 (153)
T KOG0422|consen  104 VLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK  150 (153)
T ss_pred             HHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence            99999999999999999999999999999 99999999999999864

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-35  Score=208.74  Aligned_cols=136  Identities=32%  Similarity=0.520  Sum_probs=131.1

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      .|-. +||.||-|.+.++|+....+.|.||.||||++|+|++.+.+..+||.+||+-.|+|+||||||..+|.||.+.|.
T Consensus        21 ~l~~-~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLK   99 (223)
T KOG0423|consen   21 SLDE-SPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLK   99 (223)
T ss_pred             hccc-CCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhh
Confidence            3445 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      .+|.|..+|+.||..|+.+|..|++++.+|.+|.+++.++ ++|.++||-+|.-+|..
T Consensus       100 kDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p  157 (223)
T KOG0423|consen  100 KDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP  157 (223)
T ss_pred             cccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999999999999999999999999 99999999999988764

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=7.5e-28  Score=164.53  Aligned_cols=107  Identities=34%  Similarity=0.649  Sum_probs=98.0

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccc-cCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i-~Hpni~~~G~icl~~l   80 (139)
                      +++. +||+|+... ..+|+.+|.+-+.|-+||.|+|.+|.+.++||+.||+..|+|.|..++ .||+|+.+|.||+|+|
T Consensus        26 e~q~-~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL  103 (161)
T KOG0427|consen   26 EWQN-NPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDIL  103 (161)
T ss_pred             HHhc-CCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEee
Confidence            4566 999999887 678999999999999999999999999999999999999999999764 7999999999999999


Q ss_pred             CCcCCCcccHHHHHHHHHHhhC-CCCCCCcc
Q 032505           81 QDKWSSAYDCRTILLSIQSLLG-EPNPESPL  110 (139)
Q Consensus        81 ~~~W~p~~~i~~iL~~i~~ll~-~p~~~~p~  110 (139)
                      .+.|+|++++.+|+++|.+||+ +..-..|.
T Consensus       104 ~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~  134 (161)
T KOG0427|consen  104 YDSWSPAMSVQSVCLSILSMLSSSKEKQRPT  134 (161)
T ss_pred             cccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence            9999999999999999999998 44545554

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.1e-25  Score=165.40  Aligned_cols=104  Identities=31%  Similarity=0.523  Sum_probs=92.1

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      .|++ +|.++|.+.|..+|+++||.+|.||+||||+||.|+.+|.||++||++||.|+++|+-.  .+-.+-++|+++..
T Consensus        16 ~l~k-~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNG--RFktntRLCLSiSD   92 (244)
T KOG0894|consen   16 ALCK-DPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNG--RFKTNTRLCLSISD   92 (244)
T ss_pred             HHHh-CCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCC--ceecCceEEEeccc
Confidence            5677 99999999999999999999999999999999999999999999999999999998632  22235689998874


Q ss_pred             ---CcCCCcccHHHHHHHHHHhhCC--CCCCC
Q 032505           82 ---DKWSSAYDCRTILLSIQSLLGE--PNPES  108 (139)
Q Consensus        82 ---~~W~p~~~i~~iL~~i~~ll~~--p~~~~  108 (139)
                         +.|+|++++.+||..|.++|.+  |...+
T Consensus        93 fHPdsWNP~WsVStILtGLlSFM~e~~pTtGS  124 (244)
T KOG0894|consen   93 FHPDSWNPGWSVSTILTGLLSFMTEDSPTTGS  124 (244)
T ss_pred             cCcCcCCCcccHHHHHHHHHHHHhcCCCccCc
Confidence               8899999999999999999984  55444

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=7.3e-24  Score=156.21  Aligned_cols=128  Identities=25%  Similarity=0.437  Sum_probs=118.0

Q ss_pred             CCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCC--CCCeeEEeccccCCcccC-CCcEeeecCCCc
Q 032505            7 GGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF--KPPQVKFETMCFHPNVDQ-YGNICLDILQDK   83 (139)
Q Consensus         7 ~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~--~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~   83 (139)
                      .+.+||+|.|+-.|-+.|-++|++..| +|.||+|+|+|.+|++||.  .-|+|.|.+.++||+|.+ ++.+|++-....
T Consensus        34 ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~e  112 (258)
T KOG0429|consen   34 EKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFPE  112 (258)
T ss_pred             ccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhhh
Confidence            778899999999999999999997665 8999999999999999995  789999999999999999 999999877677


Q ss_pred             CCCc-ccHHHHHHHHHHhhCCCCCCCc-c-cHHHHHHhhch-HHHHHHHHHHHHhh
Q 032505           84 WSSA-YDCRTILLSIQSLLGEPNPESP-L-NSYAAALLNNK-EDYRKMVQKQYFAG  135 (139)
Q Consensus        84 W~p~-~~i~~iL~~i~~ll~~p~~~~p-~-N~~a~~~~~~~-~~f~~~~r~~~~~~  135 (139)
                      |.-. .+|..+|..||.+|++|+.+.+ + |++|+.+|.++ ++|.++|+++++..
T Consensus       113 WRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s  168 (258)
T KOG0429|consen  113 WRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS  168 (258)
T ss_pred             hhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            9766 5999999999999999998877 4 99999999999 99999999999864

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=6e-20  Score=137.60  Aligned_cols=97  Identities=30%  Similarity=0.533  Sum_probs=86.6

Q ss_pred             CCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC---Cc
Q 032505            7 GGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ---DK   83 (139)
Q Consensus         7 ~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~---~~   83 (139)
                      +|...+.+.|.+||+++|+.+|+||.||-||||+|+.+|.||.+||++||.+..+|+-.  .+.-+-+||+++..   +.
T Consensus        25 ~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG--RFE~nkKiCLSISgyHPEt  102 (314)
T KOG0428|consen   25 DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG--RFEVNKKICLSISGYHPET  102 (314)
T ss_pred             CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC--ceeeCceEEEEecCCCccc
Confidence            78888899999999999999999999999999999999999999999999999988643  33346789999885   78


Q ss_pred             CCCcccHHHHHHHHHHhhC-CCC
Q 032505           84 WSSAYDCRTILLSIQSLLG-EPN  105 (139)
Q Consensus        84 W~p~~~i~~iL~~i~~ll~-~p~  105 (139)
                      |.|+++|++.|.+|..+|- .|+
T Consensus       103 WqPSWSiRTALlAlIgFmPt~p~  125 (314)
T KOG0428|consen  103 WQPSWSIRTALLALIGFMPTKPE  125 (314)
T ss_pred             cCcchhHHHHHHHHHccccCCCC
Confidence            9999999999999999986 444

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=2.8e-17  Score=142.64  Aligned_cols=96  Identities=27%  Similarity=0.505  Sum_probs=90.6

Q ss_pred             CCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc--ccCCcccCCCcEeeecCC---
Q 032505            7 GGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM--CFHPNVDQYGNICLDILQ---   81 (139)
Q Consensus         7 ~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~--i~Hpni~~~G~icl~~l~---   81 (139)
                      +.|.||.|...++.+.-..++|.|+.||||..|+|.|.+.||.+||.+||.+...+.  .++||.+++|+||+++|+   
T Consensus       866 ~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~  945 (1101)
T KOG0895|consen  866 SLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWH  945 (1101)
T ss_pred             cCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhcccc
Confidence            778899999999999999999999999999999999999999999999999999874  689999999999999995   


Q ss_pred             ----CcCCCcccHHHHHHHHHHhhC
Q 032505           82 ----DKWSSAYDCRTILLSIQSLLG  102 (139)
Q Consensus        82 ----~~W~p~~~i~~iL~~i~~ll~  102 (139)
                          +-|+|+.++.++|.+||.|..
T Consensus       946 g~~~e~w~~~s~~lq~l~s~q~l~l  970 (1101)
T KOG0895|consen  946 GRGNEVWNPSSSILQVLVSIQGLVL  970 (1101)
T ss_pred             CCCccccCcchhHHHHHHHhhhhhc
Confidence                569999999999999999987

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1.6e-14  Score=125.68  Aligned_cols=98  Identities=30%  Similarity=0.486  Sum_probs=91.9

Q ss_pred             cCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc---ccCCcccCCCcEeeecCC-
Q 032505            6 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM---CFHPNVDQYGNICLDILQ-   81 (139)
Q Consensus         6 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~---i~Hpni~~~G~icl~~l~-   81 (139)
                      ++.++|+.+.|.+.++...++.|.||.||||++|+|.|.|.||..||..||.+.+++.   .+.||.+.+|+||+++|. 
T Consensus       296 kdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgT  375 (1101)
T KOG0895|consen  296 KDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGT  375 (1101)
T ss_pred             ccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeee
Confidence            3889999999999999999999999999999999999999999999999999999976   789999999999999883 


Q ss_pred             ------CcCCCc-ccHHHHHHHHHHhhCC
Q 032505           82 ------DKWSSA-YDCRTILLSIQSLLGE  103 (139)
Q Consensus        82 ------~~W~p~-~~i~~iL~~i~~ll~~  103 (139)
                            +.|+|. .++.++|.+||.++.+
T Consensus       376 wtg~~~e~wtp~~~sl~qvL~sIQ~Li~~  404 (1101)
T KOG0895|consen  376 WTGSRREKWTPNGSSLLQVLESIQGLILN  404 (1101)
T ss_pred             cccccccCCCccccchhhhhhhhhhhhcc
Confidence                  679998 7999999999999973

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=8.8e-14  Score=95.79  Aligned_cols=83  Identities=28%  Similarity=0.488  Sum_probs=73.4

Q ss_pred             CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecC--CCcCCCcccHHHHHHH
Q 032505           20 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDIL--QDKWSSAYDCRTILLS   96 (139)
Q Consensus        20 ~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l--~~~W~p~~~i~~iL~~   96 (139)
                      .+..|..+|.||+.|+||+.+|.++|...++||..||+|+|.+++--+.|+. +|.|.-.-+  -.+|+..+++..+|..
T Consensus        37 tl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~  116 (138)
T KOG0896|consen   37 TLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQ  116 (138)
T ss_pred             eEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHh
Confidence            3568999999999999999999999999999999999999999999999888 677753222  2799999999999999


Q ss_pred             HHHhhC
Q 032505           97 IQSLLG  102 (139)
Q Consensus        97 i~~ll~  102 (139)
                      ++.++.
T Consensus       117 lr~~m~  122 (138)
T KOG0896|consen  117 LRKEMM  122 (138)
T ss_pred             hhHHHH
Confidence            987665

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.65  E-value=1.3e-07  Score=66.19  Aligned_cols=66  Identities=32%  Similarity=0.602  Sum_probs=60.1

Q ss_pred             CCcEEEEEEEcCCCCCCCCCeeEEeccc---cCCcccCCCcEee---ecCCCcCCCcccHHHHHHHHHHhhC
Q 032505           37 EGLSYKLSLRFPLDYPFKPPQVKFETMC---FHPNVDQYGNICL---DILQDKWSSAYDCRTILLSIQSLLG  102 (139)
Q Consensus        37 egg~f~~~i~f~~~YP~~pP~v~f~t~i---~Hpni~~~G~icl---~~l~~~W~p~~~i~~iL~~i~~ll~  102 (139)
                      .|+.+.++|.+|+.||..||.|....+.   +-|||+.+|.+|+   ...-+.|.|...+..+|...+.+|.
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~  105 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLE  105 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999887544   6899999999999   6777899999999999999999998

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.7e-07  Score=63.18  Aligned_cols=89  Identities=26%  Similarity=0.451  Sum_probs=64.3

Q ss_pred             EEEEEEcCCCCCCCCCeeEEecccc-CCcccCCCcEeeecCC-CcCCCcccHHHHHHHHHHhhCCC--CCCCcccHHHHH
Q 032505           41 YKLSLRFPLDYPFKPPQVKFETMCF-HPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEP--NPESPLNSYAAA  116 (139)
Q Consensus        41 f~~~i~f~~~YP~~pP~v~f~t~i~-Hpni~~~G~icl~~l~-~~W~p~~~i~~iL~~i~~ll~~p--~~~~p~N~~a~~  116 (139)
                      .-+.+.|+++||+.||.++-..++- ---|-++|.||+.++. ++|+.+++|+.++++|...+-.-  ....+++.+.. 
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk-   91 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK-   91 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence            3466789999999999998765533 2334458999999984 78999999999999999999854  45566665544 


Q ss_pred             Hhhch---HHHHHHHHH
Q 032505          117 LLNNK---EDYRKMVQK  130 (139)
Q Consensus       117 ~~~~~---~~f~~~~r~  130 (139)
                      +|...   +.|+..++-
T Consensus        92 ~~s~~qa~~sfksLv~~  108 (122)
T KOG0897|consen   92 LYSHSQAQQSFKSLVQI  108 (122)
T ss_pred             HhhHHHHHHHHHHHHHH
Confidence            44332   555555443

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=98.46  E-value=5.9e-07  Score=61.95  Aligned_cols=77  Identities=25%  Similarity=0.563  Sum_probs=53.4

Q ss_pred             ceEEEEEEecCCCCCCCCcEE--EEEEEcCCCCCCCCCeeEEeccc-----cCCcccCCCcEeeecCCCcCCC-cccHHH
Q 032505           21 IFTWIGTIEGGKGTMYEGLSY--KLSLRFPLDYPFKPPQVKFETMC-----FHPNVDQYGNICLDILQDKWSS-AYDCRT   92 (139)
Q Consensus        21 ~~~w~~~i~Gp~~t~yegg~f--~~~i~f~~~YP~~pP~v~f~t~i-----~Hpni~~~G~icl~~l~~~W~p-~~~i~~   92 (139)
                      +....++|.    -.|+|..|  .+.|.+|.+||.+||.+......     -+.+|+.+|+|.+..| .+|.+ ..++.+
T Consensus        32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~  106 (121)
T PF05743_consen   32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD  106 (121)
T ss_dssp             EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred             EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence            444455553    34778777  56777899999999999776432     1449999999999888 67887 779999


Q ss_pred             HHHHHHHhhC
Q 032505           93 ILLSIQSLLG  102 (139)
Q Consensus        93 iL~~i~~ll~  102 (139)
                      ++..|++.|.
T Consensus       107 lv~~l~~~F~  116 (121)
T PF05743_consen  107 LVQELQAVFS  116 (121)
T ss_dssp             HHHHHHHCCC
T ss_pred             HHHHHHHHHh
Confidence            9999998886

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.0032  Score=50.16  Aligned_cols=74  Identities=23%  Similarity=0.500  Sum_probs=57.2

Q ss_pred             ecCCCCCCCCcEEE--EEEEcCCCCCCCCCeeEEecc-----ccCCcccCCCcEeeecCCCcCC-CcccHHHHHHHHHHh
Q 032505           29 EGGKGTMYEGLSYK--LSLRFPLDYPFKPPQVKFETM-----CFHPNVDQYGNICLDILQDKWS-SAYDCRTILLSIQSL  100 (139)
Q Consensus        29 ~Gp~~t~yegg~f~--~~i~f~~~YP~~pP~v~f~t~-----i~Hpni~~~G~icl~~l~~~W~-p~~~i~~iL~~i~~l  100 (139)
                      .|---.+|.|.+|.  +.|.+.+.||..||.+.....     -.|-+|+.+|.|.+..| -+|. |+..+..++..|.+.
T Consensus        56 ~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq~l~a~  134 (365)
T KOG2391|consen   56 DGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQELIAA  134 (365)
T ss_pred             cCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHHHHHHHHHHH
Confidence            33334567777765  566789999999999866531     13899999999999999 5687 556888899888888


Q ss_pred             hCC
Q 032505          101 LGE  103 (139)
Q Consensus       101 l~~  103 (139)
                      |.+
T Consensus       135 f~~  137 (365)
T KOG2391|consen  135 FSE  137 (365)
T ss_pred             hcC
Confidence            874

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=96.38  E-value=0.044  Score=37.81  Aligned_cols=91  Identities=20%  Similarity=0.274  Sum_probs=59.1

Q ss_pred             CeEEeeCCCCceEEEEEEec--CCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccC-------CcccC-----CCcEe
Q 032505           11 GVSAFPEGESIFTWIGTIEG--GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH-------PNVDQ-----YGNIC   76 (139)
Q Consensus        11 gi~~~p~~~~~~~w~~~i~G--p~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~H-------pni~~-----~G~ic   76 (139)
                      |+..+...+.-..|-+ |.|  -+.+.|.+..-.+-|.+|..||..+|-+.+..+-..       ||=.+     .|+.-
T Consensus        13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~w   91 (122)
T PF14462_consen   13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRTW   91 (122)
T ss_pred             CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCeee
Confidence            5566655555566755 665  455579999999999999999999998766654221       11100     22211


Q ss_pred             --eecCCCcCCCcc-cHHHHHHHHHHhhC
Q 032505           77 --LDILQDKWSSAY-DCRTILLSIQSLLG  102 (139)
Q Consensus        77 --l~~l~~~W~p~~-~i~~iL~~i~~ll~  102 (139)
                        .+.-...|.|+. +|.+.|..|...|.
T Consensus        92 QrWSRH~~~W~P~~D~l~T~l~~v~~~L~  120 (122)
T PF14462_consen   92 QRWSRHNNPWRPGVDDLWTHLARVEHALA  120 (122)
T ss_pred             eeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence              111135688887 88888888887764

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=95.18  E-value=0.075  Score=34.97  Aligned_cols=46  Identities=20%  Similarity=0.188  Sum_probs=28.3

Q ss_pred             CceEEEEEEe--cCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccc
Q 032505           20 SIFTWIGTIE--GGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF   65 (139)
Q Consensus        20 ~~~~w~~~i~--Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~   65 (139)
                      +...+.+.+.  ....+.-....+.+.+.||++||..+|.+...+...
T Consensus        28 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~~   75 (113)
T PF05773_consen   28 SPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPKN   75 (113)
T ss_dssp             SSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEESS
T ss_pred             CCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCCC
Confidence            3445555562  123333445689999999999999999998765433

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=95.06  E-value=0.55  Score=30.50  Aligned_cols=25  Identities=24%  Similarity=0.541  Sum_probs=21.6

Q ss_pred             CcEEEEEEEcCCCCCCCCCeeEEec
Q 032505           38 GLSYKLSLRFPLDYPFKPPQVKFET   62 (139)
Q Consensus        38 gg~f~~~i~f~~~YP~~pP~v~f~t   62 (139)
                      .-.+.+.+.||++||..+|.+.+.+
T Consensus        40 ~~~~~l~~~~p~~YP~~~P~i~~~~   64 (107)
T smart00591       40 YVSLTLQVKLPENYPDEAPPISLLN   64 (107)
T ss_pred             ceEEEEEEECCCCCCCCCCCeEEEC
Confidence            4568899999999999999998765

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=94.66  E-value=0.068  Score=38.63  Aligned_cols=60  Identities=22%  Similarity=0.368  Sum_probs=47.0

Q ss_pred             EEEEcCCCCCCCCCeeEEecccc---CCcccCC-----CcEeeecC-CCcCCCcccHHHHHHHHHHhhC
Q 032505           43 LSLRFPLDYPFKPPQVKFETMCF---HPNVDQY-----GNICLDIL-QDKWSSAYDCRTILLSIQSLLG  102 (139)
Q Consensus        43 ~~i~f~~~YP~~pP~v~f~t~i~---Hpni~~~-----G~icl~~l-~~~W~p~~~i~~iL~~i~~ll~  102 (139)
                      +.|.|+.+||..+|.|.++-+.|   +|++...     ..+|+--- -..|.+..++..+|..|..-|.
T Consensus        57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~  125 (162)
T PF14457_consen   57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLR  125 (162)
T ss_pred             EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHH
Confidence            56889999999999877765433   4666664     67898433 2579999999999999999886

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=93.76  E-value=0.07  Score=37.71  Aligned_cols=53  Identities=19%  Similarity=0.453  Sum_probs=23.3

Q ss_pred             EEEEEEcCCCCCCCCCeeEEecccc-CCcccCCCcEeeecCC-CcC---CCcccHHHH
Q 032505           41 YKLSLRFPLDYPFKPPQVKFETMCF-HPNVDQYGNICLDILQ-DKW---SSAYDCRTI   93 (139)
Q Consensus        41 f~~~i~f~~~YP~~pP~v~f~t~i~-Hpni~~~G~icl~~l~-~~W---~p~~~i~~i   93 (139)
                      |.+++.+|..||..||.+..-.--. -.-.+..|+||++.-. .-|   .|.++|...
T Consensus        77 F~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHa  134 (161)
T PF08694_consen   77 FDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHA  134 (161)
T ss_dssp             EEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHH
T ss_pred             EeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHH
Confidence            4556667999999999997643110 1123358999997653 335   455666554

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		1e-45
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		1e-44
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		9e-30
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		1e-29
1jas_A	152	Hsubc2b Length = 152		1e-28
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		3e-27
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		1e-26
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		1e-26
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		3e-26
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		8e-26
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		1e-25
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		3e-25
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		4e-25
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		4e-25
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		4e-25
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		5e-25
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		5e-25
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		6e-25
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		6e-25
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		6e-25
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		6e-25
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		6e-25
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		6e-25
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		7e-25
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		8e-25
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		8e-25
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		2e-24
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-24
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-24
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-24
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		3e-24
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		5e-24
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		5e-24
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		8e-24
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		8e-24
3jvz_A	146	E2~ubiquitin-Hect Length = 146		9e-24
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-23
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		1e-23
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-23
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		2e-23
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		2e-23
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		2e-23
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		2e-23
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		2e-23
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		5e-23
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		6e-23
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		7e-23
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		1e-22
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		2e-22
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		6e-22
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		5e-21
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		1e-19
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		2e-19
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		4e-19
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		5e-19
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		7e-19
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		8e-19
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		1e-18
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		1e-18
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		1e-18
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		1e-18
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		1e-18
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		1e-18
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		1e-18
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		1e-18
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		1e-18
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		2e-18
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		4e-18
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		6e-18
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		1e-17
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		2e-17
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		2e-17
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		2e-17
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		2e-17
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		7e-17
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		8e-17
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		9e-17
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-16
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		1e-15
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		2e-15
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		2e-15
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		2e-15
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		2e-15
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		2e-15
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		2e-15
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		2e-15
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		2e-15
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		3e-15
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		3e-15
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		4e-15
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		4e-15
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		9e-15
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		1e-14
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		2e-14
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		4e-13
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		4e-13
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		1e-09
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		2e-09
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		6e-09
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		1e-08
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		2e-08
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		2e-08
2h2y_A	136	Crystal Structure Of Ubiquitin Conjugating Enzyme E		4e-08
4ds2_A	167	Ubiquitin Conjugating Enzyme (Putative) From Trypan		2e-07
3e95_C	158	Crystal Structure Of The Plasmodium Falciparum Ubiq		4e-07
2q0v_A	156	Crystal Structure Of Ubiquitin Conjugating Enzyme E		4e-07
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		3e-06
3ceg_A	323	Crystal Structure Of The Ubc Domain Of Baculoviral		1e-05
1jat_B	138	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		3e-04
2gmi_B	137	Mms2UBC13~UBIQUITIN Length = 137		3e-04
2qgx_A	169	Ubiquitin-Conjugating Enzyme E2q Length = 169		4e-04
2c2v_C	142	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		8e-04
2a4d_A	160	Structure Of The Human Ubiquitin-Conjugating Enzyme		8e-04
2hlw_A	170	Solution Structure Of The Human Ubiquitin-Conjugati		8e-04

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score =  177 bits (449), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 109/135 (80%), Gaps = 1/135 (0%)
Query: 2   SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFE 61
           +L+MSG D G++AFP+G+++F W+ T++G K T+YE L YKL+L FP DYP+KPP VKF 
Sbjct: 20  TLLMSG-DPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFT 78
Query: 62  TMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK 121
           T C+HPNVDQ GNICLDIL++ W+++YD RTILLS+QSLLGEPN  SPLN+ AA + +N+
Sbjct: 79  TPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQ 138
Query: 122 EDYRKMVQKQYFAGE 136
            +Y+K++ ++Y   +
Sbjct: 139 TEYKKVLHEKYKTAQ 153

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score =  174 bits (441), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 101/132 (76%), Gaps = 1/132 (0%)
Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct: 40  MTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98
Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
            T C+HPNVD  GNI LDIL++KWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct: 99  LTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158
Query: 121 KEDYRKMVQKQY 132
              ++K +Q+ Y
Sbjct: 159 PTAFKKYLQETY 170

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score =  125 bits (313), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           GVS  P  ++I TW   I G + T +E  ++KLSL F  +YP KPP VKF +  FHPNV 
Sbjct: 23  GVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVY 82
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQ 129
             G+ICLDILQ++WS  YD   IL SIQSLL EPNP SP NS AA L   N+ +Y K VQ
Sbjct: 83  ADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQ 142
Query: 130 K 130
           +
Sbjct: 143 Q 143

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score =  125 bits (313), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           GVS  P  ++I TW   I G + T +E  ++KLSL F  +YP KPP VKF +  FHPNV 
Sbjct: 26  GVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVY 85
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQ 129
             G+ICLDILQ++WS  YD   IL SIQSLL EPNP SP NS AA L   N+ +Y K VQ
Sbjct: 86  ADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQ 145
Query: 130 K 130
           +
Sbjct: 146 Q 146

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 10  LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
           +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV
Sbjct: 22  VGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV 81
Query: 70  DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMV 128
              G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct: 82  YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+S  P+  +I  W   I G   T ++G ++KLSL+F  DYP KPP V+F +  FHPN+ 
Sbjct: 23  GISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIY 82
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQ 129
             G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA + + +K +Y + V+
Sbjct: 83  ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVR 142

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 76/122 (62%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+ A P  E+   +   I G  GT YEG +YKL L  P  YP +PP+V+F T  +HPN+D
Sbjct: 20  GIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNID 79
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQK 130
           + G ICLDIL+DKWS A   RT+LLSIQ+LL  P P+ PL+S  A      ++  + V +
Sbjct: 80  KLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVAR 139
Query: 131 QY 132
           Q+
Sbjct: 140 QW 141

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 76/122 (62%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+ A P  E+   +   I G  GT YEG +YKL L  P  YP +PP+V+F T  +HPN+D
Sbjct: 20  GIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNID 79
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQK 130
           + G ICLDIL+DKWS A   RT+LLSIQ+LL  P P+ PL+S  A      ++  + V +
Sbjct: 80  KLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVAR 139
Query: 131 QY 132
           Q+
Sbjct: 140 QW 141

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 4   MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 63
           M      GVSA P  +++  W   I G   T YE  +++L L F  +YP KPP VKF + 
Sbjct: 16  MKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE 75
Query: 64  CFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKE 122
            FHPNV   G ICLDILQ++W+  YD  +IL SIQSL  +PNP SP N  AA L  ++K 
Sbjct: 76  MFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKS 135
Query: 123 DYRKMVQK 130
            Y K V++
Sbjct: 136 QYVKRVKE 143

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score =  112 bits (279), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ IF W  TI G   + Y+G  + L + FP+DYPFK P+V F T  +HPN+++ 
Sbjct: 25  SAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKN 84
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQK 130
           G ICLDIL+D+WS A     +LLSI SLL +PNP  PL+   A +L  NK+ +    ++
Sbjct: 85  GVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTARE 143

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 66/98 (67%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y G  + LS+ FP DYPFKPP+V F T  +HPN++  
Sbjct: 22  SAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSN 81
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 110
           G+ICLDIL+D+WS A     +LLSI SLL +PNP+ PL
Sbjct: 82  GSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPL 119

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 27  SAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSN 86
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +  ++KE Y ++ ++
Sbjct: 87  GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLARE 145

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 73/120 (60%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 32  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 91
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 132
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D    + +++
Sbjct: 92  GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 151

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 73/120 (60%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 30  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 89
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 132
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D    + +++
Sbjct: 90  GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 149

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 73/120 (60%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 24  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 132
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D    + +++
Sbjct: 84  GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 143

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score =  109 bits (273), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 73/120 (60%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 21  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 80
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 132
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D    + +++
Sbjct: 81  GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 140

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score =  109 bits (272), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 32  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 91
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 92  GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIARE 150

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 40  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 99
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 100 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 158

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 27  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 86
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 87  GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 145

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 24  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 84  GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 68/105 (64%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G + + Y G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 42  SAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQ 101
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL 117
           G ICLDIL+D+WS A     +LLSI SLL +PNP+ PL    A L
Sbjct: 102 GAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHL 146

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 24  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 84  GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 22  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 81
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 82  GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score =  108 bits (271), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP++ F T  +HPN++  
Sbjct: 40  SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSN 99
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +  ++KE Y +  ++
Sbjct: 100 GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 158

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score =  108 bits (271), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP++ F T  +HPN++  
Sbjct: 28  SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSN 87
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +  ++KE Y +  ++
Sbjct: 88  GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 146

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score =  108 bits (271), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP++ F T  +HPN++  
Sbjct: 24  SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSN 83
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +  ++KE Y +  ++
Sbjct: 84  GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 142

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 25  SAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 84
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 85  GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLARE 143

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 24  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+ICLDIL+ +W  A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 84  GSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 24  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+ICLD L+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 84  GSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  T  G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 24  SAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 84  GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P+G++I+ W  TI G  G++YEG  + L + F  DYPFKPP+V F T  +H N++  
Sbjct: 24  SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQ 83
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 130
           G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   + N+ ++ +M ++
Sbjct: 84  GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 142

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score =  106 bits (264), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 3/119 (2%)
Query: 12  VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV-D 70
           + A  +  + F W+G I+G +GT YEG  + L++  P DYP+ PP++KF T  +HPN+  
Sbjct: 43  IDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISS 102
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQ 129
           Q G ICLD+L+++WS A   RT LLSIQ+LL +P P+ P ++  A +   KE++   V+
Sbjct: 103 QTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMY--KENHALFVK 159

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score =  106 bits (264), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 72/120 (60%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 22  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 81
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 132
           G+I LDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D    + +++
Sbjct: 82  GSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 141

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score =  105 bits (262), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 25  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 84
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+I LDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 85  GSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 143

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score =  105 bits (262), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 24  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+I LDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 84  GSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score =  105 bits (262), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 21  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 80
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+I LDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 81  GSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 139

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++  
Sbjct: 40  SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 99
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           G+I LDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 100 GSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 158

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 65/98 (66%)
Query: 13  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 72
           SA P G+ ++ W  +I G   + Y G  + LS+ FP DYPFKPP++ F T  +HPN++  
Sbjct: 23  SAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINAN 82
Query: 73  GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 110
           GNICLDIL+D+WS A     +LLSI SLL + NP+ PL
Sbjct: 83  GNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPL 120

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
             SA P+G++I+ W  TI G  G++YEG  + L + F  +YPFKPP+V F T  +H N++
Sbjct: 67  NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQ 129
             G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   + N+ ++ +M +
Sbjct: 127 SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMAR 186
Query: 130 K 130
           +
Sbjct: 187 Q 187

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 68/105 (64%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD
Sbjct: 22  GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 81
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
           + G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL +  A
Sbjct: 82  KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVA 126

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 68/105 (64%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD
Sbjct: 24  GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 83
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
           + G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL +  A
Sbjct: 84  KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVA 128

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 68/105 (64%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD
Sbjct: 25  GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 84
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
           + G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL +  A
Sbjct: 85  KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVA 129

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 68/105 (64%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD
Sbjct: 27  GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 86
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
           + G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL +  A
Sbjct: 87  KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVA 131

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 68/105 (64%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD
Sbjct: 20  GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 79
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
           + G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL +  A
Sbjct: 80  KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVA 124

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score =  102 bits (255), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 14  AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 73
           A P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP++ F T  +HPN++  G
Sbjct: 29  AGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNG 88
Query: 74  NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           +I LDIL+ +WS A     +LLSI SLL +PNP+ PL    A +  ++KE Y +  ++
Sbjct: 89  SIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 146

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score =  102 bits (254), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G++A P  +++  +  TIEG + + YE   ++L L  P DYP + P+V+F T  +HPN+D
Sbjct: 22  GITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 81
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKE 122
           + G ICLD+L+  WS A   RT+LLSIQ+LL  PNP  PL N  A   + N++
Sbjct: 82  RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQ 134

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score =  102 bits (254), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G++A P  +++  +  TIEG + + YE   ++L L  P DYP + P+V+F T  +HPN+D
Sbjct: 24  GITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKE 122
           + G ICLD+L+  WS A   RT+LLSIQ+LL  PNP  PL N  A   + N++
Sbjct: 84  RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQ 136

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV- 69
           GVSA   G  I  W G I G  GT YEG  + L +  P DYP+ PP++KF T  +HPN+ 
Sbjct: 64  GVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNIS 123
Query: 70  DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 118
            Q G ICLDIL+ +WS A   RT LLSIQ++L +P P  P ++  A ++
Sbjct: 124 SQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM 172

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 14  AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 73
           A P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HP ++  G
Sbjct: 23  AGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNG 82
Query: 74  NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           +I LDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct: 83  SISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G++A P  +++  +  TIEG + + YE   ++L L  P DYP + P+V+F T  +HPN+D
Sbjct: 22  GITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 81
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKE 122
           + G I LD+L+  WS A   RT+LLSIQ+LL  PNP  PL N  A   + N++
Sbjct: 82  RLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQ 134

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G++A P  +++  +  TIEG + + YE   ++L L  P DYP + P+V+F T  +HP +D
Sbjct: 22  GITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAID 81
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKE 122
           + G I LD+L+  WS A   RT+LLSIQ+LL  PNP  PL N  A   + N++
Sbjct: 82  RLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQ 134

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+  FP  E +     TIEG +GT Y G  +++ L    D+P  PP+  F T  FHPNV 
Sbjct: 32  GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG 91
Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA-LLNNKEDY 124
             G IC+++L+  W++    R +LL+I+ LL  PNPES LN  A   LL N E+Y
Sbjct: 92  ANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 146

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 77/123 (62%), Gaps = 4/123 (3%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G++A P  E +  W   IEG + ++++GL ++L++ F  +Y + PP VKF T+ FHPNVD
Sbjct: 42  GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101
Query: 71  QY-GNICLDILQ--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED-YRK 126
            + G  C+D L   +KW++ Y   +ILL++Q +L  P  E+P+N  AA +L   E  YR 
Sbjct: 102 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRT 161
Query: 127 MVQ 129
           +++
Sbjct: 162 ILR 164

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 15/127 (11%)
Query: 17  EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 76
           +   I+ W   + G   T+YEG  +K  L FP DYP KPP++KF +  +HPN+D+ GN+C
Sbjct: 29  DDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVC 88
Query: 77  LDILQD-------------KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 123
           + IL D             +W   +   TILLS+ S+L +PN ESP N  AA +   +E+
Sbjct: 89  ISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKM--QREN 146
Query: 124 YRKMVQK 130
           Y +  +K
Sbjct: 147 YAEFKKK 153

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 16  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 75  ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
           +CL IL++   W  A   + ILL IQ LL EPN +SP  + A  +   N+ +Y K V+ Q
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQ 154

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 89.4 bits (220), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 16  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGT 94
Query: 75  ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A  +   N+ +Y K V+ Q
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 154

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 89.0 bits (219), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 16  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 75  ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
           +CL IL++   W  A   + ILL IQ LL EPN ++P  + A  +   N+ +Y K V+ Q
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVRAQ 154

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 26  GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 84
           GT  G  GT YEG  + + +  P++YPFKPP+++F+T  +HPN+    G ICLDIL++ W
Sbjct: 36  GTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAW 95
Query: 85  SSAYDCRTILLSIQSLLGEPNPESPLNS-YAAALLNNKEDYRK 126
           S     ++ L+S+Q+LL  P P  P ++  A   L ++E + K
Sbjct: 96  SPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 138

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 16  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 37  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 96
Query: 75  ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A  +   N+ +Y K V+ Q
Sbjct: 97  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 156

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 26  GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 84
           GT  G  GT YEG  + + +  P++YPFKPP+++F+T  +HPN+    G ICLDIL++ W
Sbjct: 37  GTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAW 96
Query: 85  SSAYDCRTILLSIQSLLGEPNPESPLNSYAAA-LLNNKEDYRK 126
           S     ++ L+S+Q+LL  P P  P ++  A   L ++E + K
Sbjct: 97  SPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 16  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 33  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 92
Query: 75  ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A  +   N+ +Y K V+ Q
Sbjct: 93  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 152

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 16  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 34  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 75  ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A  +   N+ +Y K V+ Q
Sbjct: 94  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 153

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 21/148 (14%)
Query: 12  VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 71
           V+   EG+ ++ W   I G   T YEG  +K  L+FP+DYP+ PP  +F T  +HPN+ +
Sbjct: 29  VTLVDEGD-LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 87
Query: 72  YGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 118
            G++C+ IL              ++W+   + RTILLS+ SLL EPN  SP N  A+ + 
Sbjct: 88  TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 147
Query: 119 N-------NKEDYRKMVQKQYFAGEFES 139
                      +Y  +++KQ    + ++
Sbjct: 148 RKWKESKGKDREYTDIIRKQVLGTKVDA 175

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 16  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 75  ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A  +   N+ +Y K V+ Q
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 154

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 16  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 75  ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A  +   N+ +Y K V+ Q
Sbjct: 92  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 151

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 16  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 34  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 75  ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A  +   N+ +Y K V+ Q
Sbjct: 94  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 153

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 21/148 (14%)
Query: 12  VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 71
           V+   EG+ ++ W   I G   T YEG  +K  L+FP+DYP+ PP  +F T  +HPN+ +
Sbjct: 26  VTLVDEGD-LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 84
Query: 72  YGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 118
            G++C+ IL              ++W+   + RTILLS+ SLL EPN  SP N  A+ + 
Sbjct: 85  TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 144
Query: 119 N-------NKEDYRKMVQKQYFAGEFES 139
                      +Y  +++KQ    + ++
Sbjct: 145 RKWKESKGKDREYTDIIRKQVLGTKVDA 172

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G++ + + + +      I GG  T YE   +KL +  P  YPF+PPQ++F T  +HPN+D
Sbjct: 23  GITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID 82
Query: 71  QYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEPNPESPL 110
             G ICLD+L    +  W  + +  T+L SIQ L+ EPNP+ PL
Sbjct: 83  SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPL 126

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 16  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHP V   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGT 94
Query: 75  ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A  +   N+ +Y K V+ Q
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 154

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 13/109 (11%)
Query: 20  SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 79
            ++ W   I G   T+YEG  +K  L FP DYP +PP++KF T  +HPNVD+ G++C+ I
Sbjct: 46  DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISI 105
Query: 80  L-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
           L             +++W   +   TI++S+ S+L +PN +SP N  AA
Sbjct: 106 LHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAA 154

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 16  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 75  ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
           + L IL++   W  A   + ILL IQ LL EPN + P  + A  +   N+ +Y K V+ Q
Sbjct: 92  VSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 151

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 5/112 (4%)
Query: 30  GGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAY 88
           G +GT YEG  +K+ +  P  YPFK P + F    FHPN+D+  G +CLD++   W++ Y
Sbjct: 59  GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 89  DCRTILLS-IQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK--QYFAGE 136
           D   I  S +  LL  PNP  PLN  AAA+ L+  E+Y++ +++  Q +A E
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 170

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 18  GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICL 77
           G  +  W   I G   T +EG  YKL++ FP +YP +PP+ +F    FHPNV   G +CL
Sbjct: 41  GLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCL 100
Query: 78  DILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQ 131
            IL ++  W  A   + ILL IQ LL +PN  SP  + A  +   +K +Y K V+ Q
Sbjct: 101 SILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQ 157

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 16  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 75  ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 131
           + L IL++   W  A   + ILL IQ LL EPN + P  + A  +   N+ +Y K V+ Q
Sbjct: 92  VXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVRAQ 151

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 35  MYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTIL 94
            Y+   +  S +    YP  PP+VK ET  +HPN+D  GN+CL+IL++ W       +I+
Sbjct: 47  FYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSII 106
Query: 95  LSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAG 135
             +Q L  EPNPE PLN  AA +L NN+  + + VQ+    G
Sbjct: 107 YGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSXRGG 148

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 24  WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD- 82
           W   I G +GT + G  Y +++ +P +YP KPP+VKF    +HPNV   G ICL IL + 
Sbjct: 43  WEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED 102
Query: 83  -KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA-AALLNNKEDYRKMV---QKQY 132
             W  A   + I+L +Q LL  PNP SP    A  +   NK +Y K V    KQY
Sbjct: 103 QDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 157

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 24  WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD- 82
           W   I G +GT + G  Y +++ +P +YP KPP+VKF    +HPNV   G ICL IL + 
Sbjct: 41  WEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED 100
Query: 83  -KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA-AALLNNKEDYRKMV---QKQY 132
             W  A   + I+L +Q LL  PNP SP    A  +   NK +Y K V    KQY
Sbjct: 101 QDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 155

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 36  YEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILL 95
           Y+   +  S +    YP  PP+VK ETM +HPN+D  GN+ L+IL++ W       +I+ 
Sbjct: 68  YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIY 127
Query: 96  SIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAG 135
            +Q L  EPNPE PLN  AA +L NN+  + + VQ+    G
Sbjct: 128 GLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 168

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 11  GVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
           G+ A P   E+ F W   I G + T +E   +   L FPLDYP  PP+++F    FHPN+
Sbjct: 26  GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 85
Query: 70  DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
              G +C+ IL              ++WS       ILLS+ S+L EPN ES  N  A+ 
Sbjct: 86  YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 145
Query: 117 LL-NNKEDYRKMVQK 130
           +  +++E + K+ ++
Sbjct: 146 MWRDDREQFYKIAKQ 160

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 11  GVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
           G+ A P   E+ F W   I G + T +E   +   L FPLDYP  PP+++F    FHPN+
Sbjct: 25  GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 84
Query: 70  DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
              G +C+ IL              ++WS       ILLS+ S+L EPN ES  N  A+ 
Sbjct: 85  YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 144
Query: 117 LL-NNKEDYRKMVQK 130
           +  +++E + K+ ++
Sbjct: 145 MWRDDREQFYKIAKQ 159

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 11  GVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
           G+ A P   E+ F W   I G + T +E   +   L FPLDYP  PP+++F    FHPN+
Sbjct: 28  GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 87
Query: 70  DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
              G +C+ IL              ++WS       ILLS+ S+L EPN ES  N  A+ 
Sbjct: 88  YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 147
Query: 117 LL-NNKEDYRKMVQK 130
           +  +++E + K+ ++
Sbjct: 148 MWRDDREQFYKIAKQ 162

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 11  GVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
           G+ A P   E+ F W   I G + T +E   +   L FPLDYP  PP+++F    FHPN+
Sbjct: 22  GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81
Query: 70  DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
              G +C+ IL              ++WS       ILLS+ S+L EPN ES  N  A+ 
Sbjct: 82  YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 141
Query: 117 LL-NNKEDYRKMVQK 130
           +  +++E + K+ ++
Sbjct: 142 MWRDDREQFYKIAKQ 156

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 26  GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 84
           G I G   T YEG  Y+L ++ P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W
Sbjct: 58  GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQW 117
Query: 85  SSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
           ++A   RT+LLS+Q+LL    P+ P ++  A
Sbjct: 118 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 148

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 26  GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 84
           G I G   T YEG  Y+L ++ P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W
Sbjct: 94  GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQW 153
Query: 85  SSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
           ++A   RT+LLS+Q+LL    P+ P ++  A
Sbjct: 154 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 184

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 26  GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 84
           G I G   T YEG  Y+L ++ P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W
Sbjct: 45  GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQW 104
Query: 85  SSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
           ++A   RT+LLS+Q+LL    P+ P ++  A
Sbjct: 105 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 135

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 26  GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 84
           G I G   T YEG  Y+L ++ P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W
Sbjct: 42  GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQW 101
Query: 85  SSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
           ++A   RT+LLS+Q+LL    P+ P ++  A
Sbjct: 102 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 132

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 26  GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 84
           G I G   T YEG  Y+L ++ P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W
Sbjct: 43  GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQW 102
Query: 85  SSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
           ++A   RT+LLS+Q+LL    P+ P ++  A
Sbjct: 103 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 133

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 3   LMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 62
           L+M+G DL ++      S   +     G  GT YEG  +K+ +  P DYPF  P + F  
Sbjct: 14  LIMAGYDLELN----NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMN 69
Query: 63  MCFHPNVDQY-GNICLDILQDKWSSAYDCRTIL-LSIQSLLGEPNPESPLNSYAAALLNN 120
              HPNVD+  G++CLD++   W+  Y    +  + +  LL  PNP  PLNS AA+LL  
Sbjct: 70  KLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMK 129
Query: 121 KEDYRKMVQKQY 132
            ++  +   K+Y
Sbjct: 130 DKNIYEEKVKEY 141

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 11  GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
           G+ A P+ E+ IF W   I+G   T Y    +   L FP DYP  PP++ F     HPN+
Sbjct: 23  GIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI 82
Query: 70  DQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
              G +C+ IL             +++WS       ILLS+ S+L EPN ES  N  A  
Sbjct: 83  YPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACI 142
Query: 117 L-LNNKEDYRKMVQ 129
           L  +N+ ++ + V+
Sbjct: 143 LWRDNRPEFERQVK 156

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 20  SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 79
           ++ TW G I       Y+  ++++ + FP +YPFKPP++ F+T  +HPN+D+ G +CL +
Sbjct: 33  NLLTWQGLIVPD-NPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 91
Query: 80  LQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNS 112
           +  + W  A     ++ S+ +L+ +P PE PL +
Sbjct: 92  ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA 125

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 20  SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 79
           ++ TW G I       Y+  ++++ + FP +YPFKPP++ F+T  +HPN+D+ G +CL +
Sbjct: 31  NLLTWQGLIVPD-NPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 89
Query: 80  LQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNS 112
           +  + W  A     ++ S+ +L+ +P PE PL +
Sbjct: 90  ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA 123

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 75.5 bits (184), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 24  WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQD 82
           W+   +G +GT YE  ++ L ++ P DYPFK P + F     HPNVD+  G++CLD++  
Sbjct: 41  WV-EFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQ 99
Query: 83  KWSSAYDCRTIL-LSIQSLLGEPNPESPLNSYAAALLN 119
            W+  Y    I  + +  LL  PNP  PLN  AA LL+
Sbjct: 100 TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLH 137

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 20  SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF--ETMCFHPNVDQYGNICL 77
           SI  WI  +EG  GT+YEG  ++L  +F   YPF  PQV F  E +  HP+V   G+ICL
Sbjct: 52  SITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICL 111
Query: 78  DILQDKWSSAYDCRTILLSIQSLL 101
            IL + WS A   +++ LSI S+L
Sbjct: 112 SILTEDWSPALSVQSVCLSIISML 135

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 44  SLRFPLD----YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQS 99
           S+ F LD    YP +PP+V      FHPN+D  GN+CL+IL++ WS A D ++I+  +  
Sbjct: 81  SINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLF 140
Query: 100 LLGEPNPESPLNSYAAALL 118
           L  EPNP  PLN  AA LL
Sbjct: 141 LFLEPNPNDPLNKDAAKLL 159

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 17  EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 76
           +  ++  W   +   +   Y   ++ L + FP +YPFKPP +KF T  +HPNVD+ G IC
Sbjct: 27  DDANVLVWHALLLPDQPP-YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQIC 85
Query: 77  LDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRK 126
           L I+  + W        +L ++  L+  PN   PL    A LL  N E +RK
Sbjct: 86  LPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRK 137

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 17  EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 76
           +  ++  W   +   +   Y   ++ L + FP +YPFKPP +KF T  +HPNVD+ G IC
Sbjct: 30  DDANVLVWHALLLPDQPP-YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQIC 88
Query: 77  LDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRK 126
           L I+  + W        +L ++  L+  PN   PL    A LL  N E +RK
Sbjct: 89  LPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRK 140

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 24  WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQ-YGNICLDILQ 81
           W   I G   T YE   +++ +  P  YP  PP++ F +    H NV    G ICL+IL+
Sbjct: 50  WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 82  -DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN--NKEDYRKMVQKQYFAGEFE 138
            ++W+  +D    + ++  LL EP  +SPL+    A++   +   Y+ +V  +YF  E E
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQGIV--KYFLAERE 167

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 24  WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQ-YGNICLDILQ 81
           W   I G   T YE   +++ +  P  YP  PP++ F +    H NV    G ICL+IL+
Sbjct: 50  WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILK 109
Query: 82  -DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN--NKEDYRKMVQKQYFAGEFE 138
            ++W+  +D    + ++  LL EP  +SPL+     ++   +   Y+ +V  +YF  E E
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIRCGDMSAYQGIV--KYFLAERE 167

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 24  WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQ-YGNICLDILQ 81
           W   I G   T YE   +++ +  P  YP  PP++ F +    H NV    G ICL+IL+
Sbjct: 50  WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 82  -DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN--NKEDYRKMVQKQYFAGEFE 138
            ++W+  +D    + ++  LL EP  +SPL+     ++   +   Y+ +V  +YF  E E
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIV--KYFLAERE 167

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 19  ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQYGNICL 77
            +I  WI    G + T+Y    YKL + FP DYP KPP V F +    H +V   G+ICL
Sbjct: 33  NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICL 92
Query: 78  DILQDKWSSAYDCRTILLSIQSLLG 102
            +L D ++ +     ++LSI S+L 
Sbjct: 93  SLLGDDYNPSLSISGLVLSIISMLS 117

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 15  FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           FP+   +  +  T+   +G  Y+G  ++     P  Y   PP+VK  T  +HPN+ + G 
Sbjct: 38  FPDPNKLHCFQLTVTPDEG-YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGE 96
Query: 75  ICLDILQDK------WSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAA-LLNNKEDYRK 126
           ICL +L++       W+     + ++  + SL  +  N + PLN  AA   L +KED+R 
Sbjct: 97  ICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRN 156
Query: 127 MV 128
            V
Sbjct: 157 KV 158

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 15  FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           FP+   +  +  T+   +G  Y+G  ++     P  Y   PP+VK  T  +HPN+ + G 
Sbjct: 38  FPDPNKLHCFQLTVTPDEG-YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGE 96
Query: 75  ICLDILQDK------WSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAA-LLNNKEDYRK 126
           ICL +L++       W+     + ++  + SL  +  N + PLN  AA   L +KED+R 
Sbjct: 97  ICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRN 156
Query: 127 MV 128
            V
Sbjct: 157 KV 158

>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 20  SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQYGNICLD 78
           +I  WI    G + T+Y    YK+ + FP +YP KPP V F +    H +V   G+ICL 
Sbjct: 48  NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLS 107
Query: 79  ILQDKWSSAYDCRTILLSIQSLLG 102
           +L D ++ +     ++LSI S+L 
Sbjct: 108 VLGDDYNPSLSISGLILSIISMLS 131

>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma Cruzi Length = 167

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 17  EGESIFTWIGTIEGGKGTMYEGL--SYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           + ++I+ WI  ++    ++Y G   +Y+LS+ F  DYP +PP V+F T  + P V   G 
Sbjct: 45  DTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGG 104
Query: 75  ICLDILQDKWS 85
           IC  ++ D W+
Sbjct: 105 ICDRMVNDFWT 115

>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 20  SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC--- 76
           ++  W  TI G  GT++E   Y L++    +YP  PP VKF+T      VD  G +    
Sbjct: 57  TLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNN 116
Query: 77  LDILQDKWSSAYDCRTILLSI-QSLLGEPNPESP 109
           L IL++ W+  Y   TIL+S+ Q +L   N   P
Sbjct: 117 LHILKN-WNRNYTIETILISLRQEMLSSANKRLP 149

>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 20  SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC--- 76
           ++  W  TI G  GT++E   Y L++    +YP  PP VKF+T      VD  G +    
Sbjct: 53  TLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNN 112
Query: 77  LDILQDKWSSAYDCRTILLSI-QSLLGEPNPESPLNSYAAALLNN 120
           L IL++ W+  Y   TIL+S+ Q +L   N   P  +      NN
Sbjct: 113 LHILKN-WNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 12  VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 71
           + A P   +I  W   + G + T YEG  Y   L FP ++PFKPP +   T    PN   
Sbjct: 34  ICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRF 89
Query: 72  YGN--ICLDILQ---DKWSSAYDCRTILLSIQSLLGEPNP 106
             N  +CL I     D W+ A+   TIL  + S + E  P
Sbjct: 90  KCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129

>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap Repeat- Containing Protein 6 Length = 323

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 28  IEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET-----MCFHPNVDQYGNICLDIL-- 80
           I G   T Y    ++  + FP DYP  PP V  ET     + F+PN+   G +CL IL  
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 81  -----QDKWSSAYDC-RTILLSIQSLL 101
                ++KW+        +L+S+QSL+
Sbjct: 176 WHGRPEEKWNPQTSSFLQVLVSVQSLI 202

>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 138

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 20  SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLD 78
           ++  W GTI G   + +E   Y LS+    +YP  PP+V F +    P V+   G +  D
Sbjct: 38  TMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD 97
Query: 79  --ILQDKWSSAYDCRTILLSIQSLLGEP 104
              L+D W  AY   T+LL ++  +  P
Sbjct: 98  FHTLRD-WKRAYTMETLLLDLRKEMATP 124

>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN Length = 137

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 20  SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLD 78
           ++  W GTI G   + +E   Y LS+    +YP  PP+V F +    P V+   G +  D
Sbjct: 37  TMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD 96
Query: 79  --ILQDKWSSAYDCRTILLSIQSLLGEP 104
              L+D W  AY   T+LL ++  +  P
Sbjct: 97  FHTLRD-WKRAYTMETLLLDLRKEMATP 123

>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q Length = 169

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 43  LSLRFPLDYPFKPPQVKFETMCFHPN-VDQYGNICLDILQDK-WSSAYDCRTILLSIQSL 100
           L+  F  ++PF PP V+  +       V   G IC+++L  + WSSAY   ++++ I + 
Sbjct: 72  LNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISAT 131
Query: 101 L--GEPNPESPLNSYAAALLNNKEDYRKMVQ 129
           L  G+   +   N    +L   ++ Y+ +VQ
Sbjct: 132 LVKGKARVQFGANKSQYSLTRAQQSYKSLVQ 162

>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 142

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 17  EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI- 75
           E  ++  W G I G   T+YE   Y L +     YP  PP V+F T      V+    + 
Sbjct: 36  EDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 95
Query: 76  ---CLDILQDKWSSAYDCRTILLSIQSLL 101
               + +L  KW ++Y  + +L  ++ L+
Sbjct: 96  DPRAISVLA-KWQNSYSIKVVLQELRRLM 123

>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2 Variant 1 (Uev- 1) Length = 160

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 17  EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI- 75
           E  ++  W G I G   T+YE   Y L +     YP  PP V+F T      V+    + 
Sbjct: 54  EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113
Query: 76  ---CLDILQDKWSSAYDCRTILLSIQSLL 101
               + +L  KW ++Y  + +L  ++ L+
Sbjct: 114 DPRAISVLA-KWQNSYSIKVVLQELRRLM 141

>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating Enzyme Variant Uev1a Length = 170

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 17  EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI- 75
           E  ++  W G I G   T+YE   Y L +     YP  PP V+F T      V+    + 
Sbjct: 64  EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123
Query: 76  ---CLDILQDKWSSAYDCRTILLSIQSLL 101
               + +L  KW ++Y  + +L  ++ L+
Sbjct: 124 DPRAISVLA-KWQNSYSIKVVLQELRRLM 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	7e-69
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	3e-68
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	7e-66
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	1e-65
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	2e-64
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	3e-64
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	9e-64
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	2e-63
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	5e-63
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	6e-63
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	7e-63
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	1e-62
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	1e-62
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	2e-62
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	8e-62
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	1e-61
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	1e-60
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	5e-60
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	4e-59
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	6e-59
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	8e-59
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	1e-58
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	1e-58
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	1e-57
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	3e-57
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	8e-57
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	3e-56
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	4e-56
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	6e-56
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	8e-56
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	8e-56
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	9e-56
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	1e-55
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	1e-55
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	5e-55
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	1e-54
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	5e-54
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	1e-53
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	5e-53
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	2e-52
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	7e-52
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	2e-51
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	2e-51
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	4e-50
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	1e-49
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	5e-49
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	2e-48
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	3e-42
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	5e-42
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	3e-27
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  203 bits (519), Expect = 7e-69
 Identities = 77/132 (58%), Positives = 108/132 (81%), Gaps = 1/132 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
            +L+MSG D G++AFP+G+++F W+ T++G K T+YE L YKL+L FP DYP+KPP VKF
Sbjct: 19  RTLLMSG-DPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKF 77

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
            T C+HPNVDQ GNICLDIL++ W+++YD RTILLS+QSLLGEPN  SPLN+ AA + +N
Sbjct: 78  TTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSN 137

Query: 121 KEDYRKMVQKQY 132
           + +Y+K++ ++Y
Sbjct: 138 QTEYKKVLHEKY 149

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  202 bits (517), Expect = 3e-68
 Identities = 82/132 (62%), Positives = 101/132 (76%), Gaps = 1/132 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct: 40  MTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
            T C+HPNVD  GNI LDIL++KWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct: 99  LTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

Query: 121 KEDYRKMVQKQY 132
              ++K +Q+ Y
Sbjct: 159 PTAFKKYLQETY 170

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  196 bits (500), Expect = 7e-66
 Identities = 59/130 (45%), Positives = 76/130 (58%), Gaps = 1/130 (0%)

Query: 4   MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 63
           M      GVSA P  +++  W   I G   T YE  +++L L F  +YP KPP VKF + 
Sbjct: 16  MKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE 75

Query: 64  CFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKE 122
            FHPNV   G ICLDILQ++W+  YD  +IL SIQSL  +PNP SP N  AA L  ++K 
Sbjct: 76  MFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKS 135

Query: 123 DYRKMVQKQY 132
            Y K V++  
Sbjct: 136 QYVKRVKETV 145

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  195 bits (497), Expect = 1e-65
 Identities = 58/130 (44%), Positives = 79/130 (60%), Gaps = 1/130 (0%)

Query: 4   MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 63
           +      G+S  P+  +I  W   I G   T ++G ++KLSL+F  DYP KPP V+F + 
Sbjct: 16  LQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSR 75

Query: 64  CFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKE 122
            FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA +   +K 
Sbjct: 76  MFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKR 135

Query: 123 DYRKMVQKQY 132
           +Y + V+   
Sbjct: 136 EYNRRVRDVV 145

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  192 bits (489), Expect = 2e-64
 Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 1/120 (0%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+ A P  E+   +   I G  GT YEG +YKL L  P  YP +PP+V+F T  +HPN+D
Sbjct: 20  GIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNID 79

Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQ 129
           + G ICLDIL+DKWS A   RT+LLSIQ+LL  P P+ PL+S  A     +K D   + +
Sbjct: 80  KLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVAR 139

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  192 bits (489), Expect = 3e-64
 Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+  FP  E +     TIEG +GT Y G  +++ L    D+P  PP+  F T  FHPNV 
Sbjct: 32  GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG 91

Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQ 129
             G IC+++L+  W++    R +LL+I+ LL  PNPES LN  A  L L N E+Y    +
Sbjct: 92  ANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 151

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  190 bits (485), Expect = 9e-64
 Identities = 50/120 (41%), Positives = 72/120 (60%), Gaps = 1/120 (0%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD
Sbjct: 24  GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 83

Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQ 129
           + G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL +  A     N+    +  +
Sbjct: 84  KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR 143

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  190 bits (484), Expect = 2e-63
 Identities = 48/120 (40%), Positives = 74/120 (61%), Gaps = 1/120 (0%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G++A P  +++  +  TIEG + + YE   ++L L  P DYP + P+V+F T  +HPN+D
Sbjct: 24  GITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83

Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQ 129
           + G ICLD+L+  WS A   RT+LLSIQ+LL  PNP  PL +  A   + N++  +   +
Sbjct: 84  RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAR 143

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  188 bits (480), Expect = 5e-63
 Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
             SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++
Sbjct: 23  QCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 82

Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQ 129
             G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ +
Sbjct: 83  SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAR 142

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  189 bits (481), Expect = 6e-63
 Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
             SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++
Sbjct: 38  QCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97

Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQ 129
             G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ +
Sbjct: 98  SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAR 157

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  189 bits (481), Expect = 7e-63
 Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 1/120 (0%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
             SA P G+ +F W  TI G + + Y G  + L++ FP DYPFKPP+V F T  +HPN++
Sbjct: 40  NCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN 99

Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQ 129
             G ICLDIL+D+WS A     +LLSI SLL +PNP+ PL    A L  +++  Y +  +
Sbjct: 100 SQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAR 159

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  188 bits (480), Expect = 1e-62
 Identities = 46/132 (34%), Positives = 78/132 (59%), Gaps = 4/132 (3%)

Query: 4   MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 63
           +      G++A P  E +  W   IEG + ++++GL ++L++ F  +Y + PP VKF T+
Sbjct: 35  LKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI 94

Query: 64  CFHPNVD-QYGNICLDILQ--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-N 119
            FHPNVD   G  C+D L   +KW++ Y   +ILL++Q +L  P  E+P+N  AA +L  
Sbjct: 95  PFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVK 154

Query: 120 NKEDYRKMVQKQ 131
           ++  YR +++  
Sbjct: 155 DESLYRTILRLF 166

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score =  188 bits (479), Expect = 1e-62
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 2/131 (1%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           +          +      E+     G I G   T YEG  Y+L ++ P  YPF PP+V+F
Sbjct: 20  VLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF 79

Query: 61  ETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-L 118
            T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    P+ P ++  A    
Sbjct: 80  ITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYK 139

Query: 119 NNKEDYRKMVQ 129
            N E +++  +
Sbjct: 140 QNPEMFKQTAR 150

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  188 bits (480), Expect = 2e-62
 Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 1/121 (0%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
             SA P+G++I+ W  TI G  G++YEG  + L + F  +YPFKPP+V F T  +H N++
Sbjct: 67  NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126

Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQ 129
             G ICLDIL+D WS A     +LLSI SLL + NP  PL    A   + N+ ++ +M +
Sbjct: 127 SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMAR 186

Query: 130 K 130
           +
Sbjct: 187 Q 187

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score =  187 bits (476), Expect = 8e-62
 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 2/121 (1%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           GVSA   G  I  W G I G  GT YEG  + L +  P DYP+ PP++KF T  +HPN+ 
Sbjct: 64  GVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNIS 123

Query: 71  -QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMV 128
            Q G ICLDIL+ +WS A   RT LLSIQ++L +P P  P ++  A + + N   + +  
Sbjct: 124 SQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTA 183

Query: 129 Q 129
           +
Sbjct: 184 K 184

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  187 bits (476), Expect = 1e-61
 Identities = 49/121 (40%), Positives = 74/121 (61%), Gaps = 2/121 (1%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
            + A  +  + F W+G I+G +GT YEG  + L++  P DYP+ PP++KF T  +HPN+ 
Sbjct: 42  EIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNIS 101

Query: 71  -QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMV 128
            Q G ICLD+L+++WS A   RT LLSIQ+LL +P P+ P ++  A +   N   + K  
Sbjct: 102 SQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTA 161

Query: 129 Q 129
            
Sbjct: 162 S 162

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  184 bits (468), Expect = 1e-60
 Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
            +      E+     G I G   T YEG  Y+L ++ P  YPF PP+V+F T  +HPN+ 
Sbjct: 27  QIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS 86

Query: 71  QY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 128
              G ICLDIL+D+W++A   RT+LLS+Q+LL    P+ P ++  A     N E +++  
Sbjct: 87  SVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTA 146

Query: 129 Q 129
           +
Sbjct: 147 R 147

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  181 bits (462), Expect = 5e-60
 Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 5/124 (4%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G++ + + + +      I GG  T YE   +KL +  P  YPF+PPQ++F T  +HPN+D
Sbjct: 23  GITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID 82

Query: 71  QYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYR 125
             G ICLD+L    +  W  + +  T+L SIQ L+ EPNP+ PL +  ++    NK  + 
Sbjct: 83  SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFL 142

Query: 126 KMVQ 129
           K  +
Sbjct: 143 KNAR 146

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score =  182 bits (463), Expect = 4e-59
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 2/131 (1%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           +          +      E+     G I G   T YEG  Y+L ++ P  YPF PP+V+F
Sbjct: 69  VLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF 128

Query: 61  ETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL- 118
            T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    P+ P ++  A    
Sbjct: 129 ITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYK 188

Query: 119 NNKEDYRKMVQ 129
            N E +++  +
Sbjct: 189 QNPEMFKQTAR 199

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  178 bits (454), Expect = 6e-59
 Identities = 49/130 (37%), Positives = 67/130 (51%), Gaps = 8/130 (6%)

Query: 11  GVSAFPEGES-----IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 65
           G  A P   S     +  W   I G   T +EG  YKL++ FP +YP +PP+ +F    F
Sbjct: 29  GFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLF 88

Query: 66  HPNVDQYGNICLDILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKE 122
           HPNV   G +CL IL ++  W  A   + ILL IQ LL +PN  SP  + A  +   +K 
Sbjct: 89  HPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKV 148

Query: 123 DYRKMVQKQY 132
           +Y K V+ Q 
Sbjct: 149 EYEKRVRAQA 158

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  178 bits (453), Expect = 8e-59
 Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 2/117 (1%)

Query: 15  FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 74
           F + + +  +   I       Y+   +  S +    YP  PP+VK ETM +HPN+D  GN
Sbjct: 28  FSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGN 86

Query: 75  ICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           +CL+IL++ W       +I+  +Q L  EPNPE PLN  AA +L NN+  + + VQ+
Sbjct: 87  VCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQR 143

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  179 bits (455), Expect = 1e-58
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 4   MMSGGDLGVSAFPEGESIFTW----IGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVK 59
           +     + ++     +S        +  I       Y   S   +L F   YP +PP+V 
Sbjct: 41  LDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVV 100

Query: 60  FETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL- 118
                FHPN+D  GN+CL+IL++ WS A D ++I+  +  L  EPNP  PLN  AA LL 
Sbjct: 101 CLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLC 160

Query: 119 NNKEDYRKMVQK 130
             ++++ + V+ 
Sbjct: 161 EGEKEFAEAVRL 172

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  178 bits (453), Expect = 1e-58
 Identities = 52/129 (40%), Positives = 67/129 (51%), Gaps = 8/129 (6%)

Query: 11  GVSAFPEGES-----IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 65
           G  A P         +  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   F
Sbjct: 26  GFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF 85

Query: 66  HPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKE 122
           HPNV   G +CL IL++   W  A   + ILL IQ LL EPN +SP  + A  +   N+ 
Sbjct: 86  HPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRV 145

Query: 123 DYRKMVQKQ 131
           +Y K V+ Q
Sbjct: 146 EYEKRVRAQ 154

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  176 bits (448), Expect = 1e-57
 Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 2/118 (1%)

Query: 14  AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 73
           +F + + +  +   I       Y+   +  S +    YP  PP+VK ETM +HPN+D  G
Sbjct: 47  SFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEG 105

Query: 74  NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 130
           N+ L+IL++ W       +I+  +Q L  EPNPE PLN  AA +L NN+  + + VQ+
Sbjct: 106 NVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQR 163

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  173 bits (442), Expect = 3e-57
 Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 8/129 (6%)

Query: 11  GVSAFPEGES-----IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 65
           G  A P  ++     +  W   I G +GT + G  Y +++ +P +YP KPP+VKF    +
Sbjct: 23  GFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 82

Query: 66  HPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKE 122
           HPNV   G ICL IL +   W  A   + I+L +Q LL  PNP SP    A      NK 
Sbjct: 83  HPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKA 142

Query: 123 DYRKMVQKQ 131
           +Y K V  Q
Sbjct: 143 EYDKKVLLQ 151

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score =  173 bits (440), Expect = 8e-57
 Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 6   SGGDLGVSAFPEGESIFTWIGTIEGGKGTMY--EGLSYKLSLRFPLDYPFKPPQVKFETM 63
                      + ++I+ WI  ++    ++Y   G +Y+LS+ F  DYP +PP V+F T 
Sbjct: 34  GSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTP 93

Query: 64  CFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL---GEPNPESPLNSYAAALL-N 119
            + P V   G IC  ++ D W+       ++  +   +    +   +  +N  A   L  
Sbjct: 94  VYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEK 153

Query: 120 NKEDYRKMVQK 130
             +D+   V++
Sbjct: 154 FPQDFAARVRR 164

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  171 bits (436), Expect = 3e-56
 Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 11  GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
            ++     ES I    GT  G  GT YEG  + + +  P++YPFKPP+++F+T  +HPN+
Sbjct: 20  HITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI 79

Query: 70  D-QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKM 127
               G ICLDIL++ WS     ++ L+S+Q+LL  P P  P ++  A   L ++E + K 
Sbjct: 80  SSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKT 139

Query: 128 VQ 129
             
Sbjct: 140 AA 141

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  170 bits (433), Expect = 4e-56
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 4   MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET- 62
            ++   +  +      +I  WI    G + T+Y    YKL + FP DYP KPP V F   
Sbjct: 18  FLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK 77

Query: 63  MCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 108
              H +V   G+ICL +L D ++ +     ++LSI S+L     + 
Sbjct: 78  PPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score =  171 bits (435), Expect = 6e-56
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 8/132 (6%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M L  S        +P  +++  +    +G +GT YE  ++ L ++ P DYPFK P + F
Sbjct: 22  MRLCNST----RKVYPS-DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGF 76

Query: 61  ETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTIL-LSIQSLLGEPNPESPLNSYAAALL 118
                HPNVD + G++CLD++   W+  Y    I  + +  LL  PNP  PLN  AA LL
Sbjct: 77  CNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLL 136

Query: 119 -NNKEDYRKMVQ 129
             ++  +  +++
Sbjct: 137 HADRVGFDALLR 148

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score =  170 bits (433), Expect = 8e-56
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 7/132 (5%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
             L+M+G            S   +     G  GT YEG  +K+ +  P DYPF  P + F
Sbjct: 12  TKLIMAG----YDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGF 67

Query: 61  ETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTIL-LSIQSLLGEPNPESPLNSYAAALL 118
                HPNVD   G++CLD++   W+  Y    +  + +  LL  PNP  PLNS AA+LL
Sbjct: 68  MNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLL 127

Query: 119 -NNKEDYRKMVQ 129
             +K  Y + V+
Sbjct: 128 MKDKNIYEEKVK 139

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  170 bits (434), Expect = 8e-56
 Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 15/136 (11%)

Query: 11  GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
           G+ A P  E   F W   I G + T +E   +   L FPLDYP  PP+++F    FHPN+
Sbjct: 22  GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81

Query: 70  DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
              G +C+ IL              ++WS       ILLS+ S+L EPN ES  N  A+ 
Sbjct: 82  YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 141

Query: 117 LL-NNKEDYRKMVQKQ 131
           +  +++E + K+ ++ 
Sbjct: 142 MWRDDREQFYKIAKQI 157

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  169 bits (431), Expect = 9e-56
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 1/105 (0%)

Query: 4   MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET- 62
            +    +  +      +I  WI    G + T+Y    YK+ + FP +YP KPP V F   
Sbjct: 32  FLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQK 91

Query: 63  MCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPE 107
              H +V   G+ICL +L D ++ +     ++LSI S+L     +
Sbjct: 92  PPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKEK 136

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  170 bits (433), Expect = 1e-55
 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 16/136 (11%)

Query: 11  GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
           G SA    ++ ++ W   I G   T+YEG  +K  L FP DYP +PP++KF T  +HPNV
Sbjct: 36  GFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV 95

Query: 70  DQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
           D+ G++C+ IL             +++W   +   TI++S+ S+L +PN +SP N  AA 
Sbjct: 96  DKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAK 155

Query: 117 LL--NNKEDYRKMVQK 130
               +   ++++ V +
Sbjct: 156 EWREDRNGEFKRKVAR 171

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  170 bits (433), Expect = 1e-55
 Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 15/136 (11%)

Query: 11  GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
           G+ A P+ E+ IF W   I+G   T Y    +   L FP DYP  PP++ F     HPN+
Sbjct: 23  GIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI 82

Query: 70  DQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
              G +C+ IL             +++WS       ILLS+ S+L EPN ES  N  A  
Sbjct: 83  YPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACI 142

Query: 117 LL-NNKEDYRKMVQKQ 131
           L  +N+ ++ + V+  
Sbjct: 143 LWRDNRPEFERQVKLS 158

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  169 bits (430), Expect = 5e-55
 Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 8/133 (6%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           + L+ S  +           +  ++    G +GT YEG  +K+ +  P  YPFK P + F
Sbjct: 35  IKLIESKHE-VTIL----GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGF 89

Query: 61  ETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAAL- 117
               FHPN+D   G +CLD++   W++ YD   I  S +  LL  PNP  PLN  AAA+ 
Sbjct: 90  MNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMY 149

Query: 118 LNNKEDYRKMVQK 130
           L+  E+Y++ +++
Sbjct: 150 LHRPEEYKQKIKE 162

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  167 bits (424), Expect = 1e-54
 Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 5/122 (4%)

Query: 1   MSLMMSGGDLGVSAFPEGE---SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQ 57
                  G    S         ++  W GTI G   + +E   Y LS+    +YP  PP+
Sbjct: 16  EKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPK 75

Query: 58  VKFETMCFHPNVD-QYGNICLDILQDK-WSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 115
           V F +    P V+   G +  D    + W  AY   T+LL ++  +  P  +        
Sbjct: 76  VTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEG 135

Query: 116 AL 117
             
Sbjct: 136 ET 137

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  166 bits (423), Expect = 5e-54
 Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 21/142 (14%)

Query: 11  GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
           G       E  ++ W   I G   T YEG  +K  L+FP+DYP+ PP  +F T  +HPN+
Sbjct: 26  GFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI 85

Query: 70  DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
            + G++C+ IL              ++W+   + RTILLS+ SLL EPN  SP N  A+ 
Sbjct: 86  YETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASV 145

Query: 117 LL-NNKE------DYRKMVQKQ 131
           +    KE      +Y  +++KQ
Sbjct: 146 MYRKWKESKGKDREYTDIIRKQ 167

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  167 bits (424), Expect = 1e-53
 Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 11  GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
            ++     ES I    GT  G  GT YEG  + + +  P++YPFKPP+++F+T  +HPN+
Sbjct: 21  HITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI 80

Query: 70  D-QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKM 127
               G ICLDIL++ WS     ++ L+S+Q+LL  P P  P ++  A   L ++E + K 
Sbjct: 81  SSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKT 140

Query: 128 VQ 129
             
Sbjct: 141 AA 142

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  163 bits (415), Expect = 5e-53
 Identities = 39/127 (30%), Positives = 54/127 (42%), Gaps = 8/127 (6%)

Query: 1   MSLMMSGGDLGVSAFPEGES---IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQ 57
                     GVS   E      +  W  TI G  GT++E   Y L++    +YP  PP 
Sbjct: 31  ERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPT 90

Query: 58  VKFETMCFHPNVDQYGNIC---LDILQDKWSSAYDCRTILLSI-QSLLGEPNPESPLNSY 113
           VKF+T      VD  G +    L IL++ W+  Y   TIL+S+ Q +L   N   P  + 
Sbjct: 91  VKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEMLSSANKRLPQPNE 149

Query: 114 AAALLNN 120
                NN
Sbjct: 150 GEVYSNN 156

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  162 bits (411), Expect = 2e-52
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 11  GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
            +      ++ +  W   +       Y   ++ L + FP +YPFKPP +KF T  +HPNV
Sbjct: 23  YLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV 81

Query: 70  DQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKM 127
           D+ G ICL I+  + W        +L ++  L+  PN   PL    A LL  N E +RK 
Sbjct: 82  DENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKN 141

Query: 128 VQK 130
            ++
Sbjct: 142 AEE 144

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  160 bits (407), Expect = 7e-52
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 1   MSLMMSGGDLGVSAFPEGE----SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPP 56
                  GD G  ++   +    ++  W G I G   T+YE   Y L +     YP  PP
Sbjct: 35  EEGQKGVGD-GTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP 93

Query: 57  QVKFETMCFHPNVDQYGNI----CLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNS 112
            V+F T      V+    +     + +L  KW ++Y  + +L  ++ L+           
Sbjct: 94  FVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENMKLPQP 152

Query: 113 YAAALLNN 120
                 +N
Sbjct: 153 PEGQCYSN 160

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  167 bits (423), Expect = 2e-51
 Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 1/122 (0%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
             SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T  +HPN++
Sbjct: 22  QCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81

Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQ 129
             G+I LDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ +
Sbjct: 82  SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAR 141

Query: 130 KQ 131
           + 
Sbjct: 142 EW 143

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  159 bits (405), Expect = 2e-51
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 6/125 (4%)

Query: 12  VSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNV 69
            S  P  E+ +  W   I G   T YE   +++ +  P  YP  PP++ F +    H NV
Sbjct: 37  ESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNV 96

Query: 70  D-QYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL--NNKEDYR 125
               G ICL+IL+ ++W+  +D    + ++  LL EP  +SPL+     ++   +   Y+
Sbjct: 97  KSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQ 156

Query: 126 KMVQK 130
            +V+ 
Sbjct: 157 GIVKY 161

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  156 bits (397), Expect = 4e-50
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 1   MSLMMSGGDLGVSAFP----EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPP 56
                  GD G  ++     E  ++  W G I G   T+YE   Y L +     YP  PP
Sbjct: 45  EEGQKGVGD-GTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP 103

Query: 57  QVKFETMCFHPNVDQYGNI----CLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNS 112
            V+F T      V+    +     + +L  KW ++Y  + +L  ++ L+           
Sbjct: 104 FVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENMKLPQP 162

Query: 113 YAAALLNN 120
                 +N
Sbjct: 163 PEGQCYSN 170

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  155 bits (393), Expect = 1e-49
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 11  GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
                   E+ + TW G I       Y+  ++++ + FP +YPFKPP++ F+T  +HPN+
Sbjct: 21  NFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNI 79

Query: 70  DQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKM 127
           D+ G +CL ++  + W  A     ++ S+ +L+ +P PE PL +  A     +++ + K 
Sbjct: 80  DEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKN 139

Query: 128 VQ 129
            +
Sbjct: 140 AE 141

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  152 bits (387), Expect = 5e-49
 Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 5/105 (4%)

Query: 1   MSLMMSGGDLGVSAFPE--GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQV 58
           ++L       G++   +    SI  WI  +EG  GT+YEG  ++L  +F   YPF  PQV
Sbjct: 32  LALQNDPPP-GMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQV 90

Query: 59  KFET--MCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL 101
            F    +  HP+V   G+ICL IL + WS A   +++ LSI S+L
Sbjct: 91  MFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISML 135

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  152 bits (385), Expect = 2e-48
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 8/128 (6%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
                    +               Y+G  ++     P  Y   PP+VK  T  +HPN+ 
Sbjct: 33  TCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNIT 92

Query: 71  QYGNICLDILQDK------WSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAALL-NNKE 122
           + G ICL +L++       W+     + ++  + SL  +  N + PLN  AA     +KE
Sbjct: 93  ETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKE 152

Query: 123 DYRKMVQK 130
           D+R  V  
Sbjct: 153 DFRNKVDD 160

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score =  136 bits (345), Expect = 3e-42
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 18/147 (12%)

Query: 1   MSLMMSG--GDLGVSAFPEGESIFTWIGTIEGG-KGTMYEG-----------LSYKLSLR 46
             +  S        S     +S++ W   ++     +                   L+  
Sbjct: 37  RDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFS 96

Query: 47  FPLDYPFKPPQVKFETMCFHPN-VDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEP 104
           F  ++PF PP V+          V   G +C+++L    WSSAY   ++++ I + L + 
Sbjct: 97  FKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKG 156

Query: 105 NPESPLNSYAAA--LLNNKEDYRKMVQ 129
                  +      L   ++ Y  +VQ
Sbjct: 157 KARVQFGANKNQYNLARAQQSYNSIVQ 183

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score =  136 bits (345), Expect = 5e-42
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 3/109 (2%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
            + A P   +I  W   + G + T YEG  Y   L FP ++PFKPP +   T       +
Sbjct: 33  YICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN 92

Query: 71  -QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPE--SPLNSYAAA 116
            +      D   D W+ A+   TIL  + S + E  P   S   S    
Sbjct: 93  TRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTK 141

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score =  102 bits (254), Expect = 3e-27
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 18/143 (12%)

Query: 7   GGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-- 64
                V    + E +      I G   T Y    ++  + FP DYP  PP V  ET    
Sbjct: 95  SSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGH 154

Query: 65  ---FHPNVDQYGNICLDIL-------QDKWSSAYDC-RTILLSIQSLLGEPNP--ESPLN 111
              F+PN+   G +CL IL       ++KW+        +L+S+QSL+    P    P  
Sbjct: 155 SVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGY 214

Query: 112 SYAAALLNNKED---YRKMVQKQ 131
             +    +  +    Y   +++ 
Sbjct: 215 ERSRGTPSGTQSSREYDGNIRQA 237

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 28  IEGGKGTMYEGLSYKLSLRF--PLDYPFKPPQVKF---ETM--CFHPNVDQYGNICLDIL 80
           + G     Y G +Y + +       YP+ PP        +M      +VD  G I L  L
Sbjct: 56  LTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYL 115

Query: 81  QDKWSSAYDCRTILLSIQSLLGEPNPESPLNS 112
            +      D   ++  +  + G+   E P+ S
Sbjct: 116 HEWKHPQSDLLGLIQVMIVVFGD---EPPVFS 144

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 41/124 (33%)

Query: 5   MSG-G----------DLGV-SAFPEGESIFTWIGTIEGGKGT------MYEGLSYKLSLR 46
           + G G             V         IF W+  +     +      M + L Y++   
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFK--IF-WL-NL-KNCNSPETVLEMLQKLLYQIDPN 212

Query: 47  F--PLDYPFKPP------QVKFETMCFHPNVDQYGNICLDILQDKWSS----AYD--CRT 92
           +    D+           Q +   +        Y N CL +L +  ++    A++  C+ 
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYEN-CLLVLLNVQNAKAWNAFNLSCKI 268

Query: 93  ILLS 96
           +L +
Sbjct: 269 LLTT 272

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	100.0
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.89
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.83
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.63
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.61
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	95.89
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	94.4
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	94.02
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	93.86
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	93.8
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	91.73
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	90.95
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	89.59
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	85.43

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=1.7e-50  Score=287.93  Aligned_cols=136  Identities=38%  Similarity=0.700  Sum_probs=132.6

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus        15 ~l~~-~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL~   93 (151)
T 4gpr_A           15 EIQQ-DPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILK   93 (151)
T ss_dssp             HHHH-SCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGT
T ss_pred             HHHh-CCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECCCCEEEccccc
Confidence            4566 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||++
T Consensus        94 ~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p  151 (151)
T 4gpr_A           94 DQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP  151 (151)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999 99999999999999985

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.8e-50  Score=288.57  Aligned_cols=137  Identities=36%  Similarity=0.609  Sum_probs=130.9

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus        16 ~l~~-~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~   94 (154)
T 2c2v_B           16 RLLA-EPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK   94 (154)
T ss_dssp             HHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCHHHH
T ss_pred             HHHh-CCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccCCeEEchhcc
Confidence            4566 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES  139 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~~  139 (139)
                      ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||.+.
T Consensus        95 ~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~~  153 (154)
T 2c2v_B           95 DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNN  153 (154)
T ss_dssp             TSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999 999999999999999863

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=2.2e-50  Score=286.77  Aligned_cols=137  Identities=41%  Similarity=0.675  Sum_probs=132.6

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus        12 ~l~~-~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~   90 (149)
T 2r0j_A           12 NLAN-EPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILK   90 (149)
T ss_dssp             HHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGT
T ss_pred             HHHh-CCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCCEEechhcC
Confidence            4566 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES  139 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~~  139 (139)
                      ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||+++
T Consensus        91 ~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~  149 (149)
T 2r0j_A           91 DKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANNN  149 (149)
T ss_dssp             TTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC-
T ss_pred             CCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccCC
Confidence            9999999999999999999999999999999999999999 999999999999999863

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=1.2e-49  Score=287.47  Aligned_cols=134  Identities=40%  Similarity=0.718  Sum_probs=130.9

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus        32 ~l~~-~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~G~ICL~iL~  110 (166)
T 2ayv_A           32 DLSK-DPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILK  110 (166)
T ss_dssp             HHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGT
T ss_pred             HHHh-CCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCCCCeEEccccc
Confidence            4566 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE  136 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a  136 (139)
                      ++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++| ++|.++||+|+++||
T Consensus       111 ~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A  166 (166)
T 2ayv_A          111 DQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA  166 (166)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999 999999999999997

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=1.2e-49  Score=283.26  Aligned_cols=135  Identities=39%  Similarity=0.710  Sum_probs=131.5

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus        15 ~l~~-~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~   93 (150)
T 1z2u_A           15 DLGR-DPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR   93 (150)
T ss_dssp             HHHH-SCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGT
T ss_pred             HHHh-CCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCCCCeEeecccc
Confidence            4566 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++||+
T Consensus        94 ~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~  150 (150)
T 1z2u_A           94 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM  150 (150)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999 9999999999999995

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=1.7e-49  Score=286.37  Aligned_cols=135  Identities=39%  Similarity=0.726  Sum_probs=131.6

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.
T Consensus        30 ~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~~G~ICl~iL~  108 (165)
T 2c4o_A           30 DLAR-DPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR  108 (165)
T ss_dssp             HHHS-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGT
T ss_pred             HHHh-CCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCCCCeEeehhhc
Confidence            4566 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      ++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++| ++|.++||+|+++||+
T Consensus       109 ~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~  165 (165)
T 2c4o_A          109 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM  165 (165)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999 9999999999999995

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=1.7e-49  Score=282.94  Aligned_cols=136  Identities=43%  Similarity=0.712  Sum_probs=131.7

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus        15 ~l~~-~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~   93 (152)
T 2aak_A           15 RLQQ-DPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ   93 (152)
T ss_dssp             HHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGT
T ss_pred             HHHh-CCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCCCEEechhhc
Confidence            4566 889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++||.+
T Consensus        94 ~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~  151 (152)
T 2aak_A           94 NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA  151 (152)
T ss_dssp             TSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred             CCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence            9999999999999999999999999999999999999999 99999999999999976

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=9.6e-50  Score=288.65  Aligned_cols=136  Identities=42%  Similarity=0.692  Sum_probs=132.1

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.
T Consensus        15 ~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~G~ICl~iL~   93 (169)
T 1ayz_A           15 RMKE-DAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ   93 (169)
T ss_dssp             HHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGT
T ss_pred             HHHh-CCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCCCeEeehhhc
Confidence            4566 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      +.|+|+++|.+||.+|++||.+|++++|+|.+||++|+++ ++|.++||+|+++||.+
T Consensus        94 ~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~  151 (169)
T 1ayz_A           94 NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWED  151 (169)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999 99999999999999964

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-49  Score=285.61  Aligned_cols=134  Identities=36%  Similarity=0.593  Sum_probs=130.8

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus        24 ~l~~-~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~  102 (158)
T 1zdn_A           24 TLTA-DPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLK  102 (158)
T ss_dssp             HHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCHHHHT
T ss_pred             HHHh-CCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCCCCEEehhhcC
Confidence            4566 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE  136 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a  136 (139)
                      ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+||++||
T Consensus       103 ~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A  158 (158)
T 1zdn_A          103 RDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  158 (158)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999 999999999999997

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.2e-49  Score=285.97  Aligned_cols=137  Identities=31%  Similarity=0.567  Sum_probs=132.7

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus        15 ~l~~-~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~iL~   93 (169)
T 1yh2_A           15 MLAT-EPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLK   93 (169)
T ss_dssp             HHHH-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGS
T ss_pred             HHHh-CCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCcCCeEeccccc
Confidence            4566 899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ----CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032505           82 ----DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES  139 (139)
Q Consensus        82 ----~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~~  139 (139)
                          ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||+.+
T Consensus        94 ~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~  156 (169)
T 1yh2_A           94 LPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQK  156 (169)
T ss_dssp             CTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Confidence                8999999999999999999999999999999999999999 999999999999999863

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=7.7e-50  Score=283.92  Aligned_cols=135  Identities=31%  Similarity=0.561  Sum_probs=130.8

Q ss_pred             cccccCCCCCeEEeeCCC-CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeec
Q 032505            2 SLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDI   79 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~   79 (139)
                      +|++ ++++||++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++
T Consensus        12 ~l~~-~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~i   90 (149)
T 1fxt_A           12 AVKD-DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDI   90 (149)
T ss_dssp             HHHH-CGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSSCCBCCHH
T ss_pred             HHHh-CCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCCCeEeCCc
Confidence            4566 8899999999887 9999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             CCCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           80 LQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        80 l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      |.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||+
T Consensus        91 L~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~  149 (149)
T 1fxt_A           91 LKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             HHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999 9999999999999985

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=1.2e-49  Score=284.64  Aligned_cols=136  Identities=35%  Similarity=0.585  Sum_probs=132.3

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus        16 ~l~~-~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~   94 (155)
T 1jat_A           16 KLVS-DPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK   94 (155)
T ss_dssp             HHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCCBCCGGGT
T ss_pred             HHHh-CCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCCCCEEEchhhc
Confidence            4566 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||++
T Consensus        95 ~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~  152 (155)
T 1jat_A           95 TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK  152 (155)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999 99999999999999975

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=4.8e-49  Score=281.77  Aligned_cols=136  Identities=55%  Similarity=1.101  Sum_probs=131.0

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus        20 ~l~~-~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~   98 (156)
T 2e2c_A           20 TLLM-SGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK   98 (156)
T ss_dssp             HHHH-HCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGT
T ss_pred             HHHh-CCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCccCceEECcccc
Confidence            4556 789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES  139 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~~  139 (139)
                      ++|+|+++|.+||.+|+++|.+|++++|+|.+||++| +| ++|.++||+|+++||.++
T Consensus        99 ~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~~~  156 (156)
T 2e2c_A           99 ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSDK  156 (156)
T ss_dssp             TTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999999999999999999999 78 999999999999999763

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-48  Score=282.16  Aligned_cols=136  Identities=32%  Similarity=0.595  Sum_probs=130.4

Q ss_pred             cccccCCCCCeEEeeCC-CCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~-~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      +|++ ++++||++.|.+ +|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus        15 ~l~~-~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~iL   93 (165)
T 2ucz_A           15 QLIK-DSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISIL   93 (165)
T ss_dssp             HHHH-SCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTTSBBCCGGG
T ss_pred             HHHh-CCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCCCCcEeehhh
Confidence            4566 899999999975 79999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -------------CCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           81 -------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        81 -------------~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                                   .++|+|+++|++||.+|++||.+|++++|+|.+||.+|++| ++|.++||+++++++.+
T Consensus        94 ~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~~~~  165 (165)
T 2ucz_A           94 HSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSLGF  165 (165)
T ss_dssp             SCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHTTC
T ss_pred             CCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhhC
Confidence                         68999999999999999999999999999999999999999 99999999999999864

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-48  Score=281.55  Aligned_cols=134  Identities=35%  Similarity=0.627  Sum_probs=129.3

Q ss_pred             cccccCCCCCeEEeeCCC-----CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEe
Q 032505            2 SLMMSGGDLGVSAFPEGE-----SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC   76 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~-----~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~ic   76 (139)
                      +|++ ++++||++.|.++     |+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||
T Consensus        21 ~l~~-~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HPnV~~~G~iC   99 (163)
T 3rcz_B           21 QWRR-DHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVC   99 (163)
T ss_dssp             HHHH-SCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTSBBC
T ss_pred             HHHh-CCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccCCCCCCCcEe
Confidence            4667 9999999999866     999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCc--CCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505           77 LDILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE  136 (139)
Q Consensus        77 l~~l~~~--W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a  136 (139)
                      +++|...  |+|+++|++||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||
T Consensus       100 l~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya  162 (163)
T 3rcz_B          100 LSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA  162 (163)
T ss_dssp             CGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred             ccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9999764  99999999999999999999999999999999999999 999999999999998

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=2e-48  Score=280.45  Aligned_cols=135  Identities=34%  Similarity=0.609  Sum_probs=129.9

Q ss_pred             cccccCCCCCeEEeeCCC-CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      +|++ ++++||++.|.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus        14 ~l~~-~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~~G~iCl~iL   92 (164)
T 3h8k_A           14 QLTL-NPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISIL   92 (164)
T ss_dssp             HHHH-SCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTSBBCCGGG
T ss_pred             HHHh-CCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCCCCcEeeecc
Confidence            4566 8999999999876 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C-------------CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           81 Q-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        81 ~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      .             ++|+|++||++||.+|+++|.+|++++|+|.+||.+|++| ++|.++||+++++++.
T Consensus        93 ~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s~~  163 (164)
T 3h8k_A           93 HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLG  163 (164)
T ss_dssp             SCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred             cCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence            7             7899999999999999999999999999999999999999 9999999999999874

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-48  Score=287.34  Aligned_cols=129  Identities=40%  Similarity=0.667  Sum_probs=125.2

Q ss_pred             CCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCCcc
Q 032505           10 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAY   88 (139)
Q Consensus        10 ~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~~   88 (139)
                      +||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|++
T Consensus        63 ~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~  142 (193)
T 2f4z_A           63 HGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPAL  142 (193)
T ss_dssp             -CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTS
T ss_pred             CcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEecCCccCCCcCCCCEEECccccccCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999994 99999999999999999


Q ss_pred             cHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           89 DCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        89 ~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      +|.+||++|++||.+|++++|+|.+||++|++| ++|.++||+|+++||.|
T Consensus       143 ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya~~  193 (193)
T 2f4z_A          143 TIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAKE  193 (193)
T ss_dssp             CHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred             CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence            999999999999999999999999999999999 99999999999999975

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=3.3e-48  Score=285.95  Aligned_cols=135  Identities=37%  Similarity=0.634  Sum_probs=131.5

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus        59 ~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~iL~  137 (194)
T 3bzh_A           59 DITL-DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK  137 (194)
T ss_dssp             HHHH-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTCBBCCGGGT
T ss_pred             HHHh-CCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECCCCceechhhh
Confidence            4566 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      ++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++| ++|.++||+|+++||+
T Consensus       138 ~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~  194 (194)
T 3bzh_A          138 DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  194 (194)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999 9999999999999985

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=1.6e-48  Score=291.70  Aligned_cols=136  Identities=35%  Similarity=0.661  Sum_probs=131.7

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l   80 (139)
                      +|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|
T Consensus        34 ~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL  112 (216)
T 2pwq_A           34 DIEN-ENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVL  112 (216)
T ss_dssp             HHHH-SCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCHHH
T ss_pred             HHHh-CCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCCEEEchhh
Confidence            4566 88999999999999999999999999999999999999999999999999999999999999995 999999999


Q ss_pred             CCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           81 QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        81 ~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      .+.|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++||..
T Consensus       113 ~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~  171 (216)
T 2pwq_A          113 KNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG  171 (216)
T ss_dssp             HHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             cccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999 99999999999999975

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=3.2e-48  Score=277.77  Aligned_cols=135  Identities=34%  Similarity=0.581  Sum_probs=129.6

Q ss_pred             cccccCCCCCeEEeeCC-----CCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEe
Q 032505            2 SLMMSGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC   76 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~-----~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~ic   76 (139)
                      +|++ ++++||++.|..     +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||
T Consensus        15 ~l~~-~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iC   93 (157)
T 2gjd_A           15 KWRK-DHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTIC   93 (157)
T ss_dssp             HHHH-CCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTTBCTTSBBC
T ss_pred             HHHh-CCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCCCCCCCcEe
Confidence            4666 899999999874     4899999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCC--cCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           77 LDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        77 l~~l~~--~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      +++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++||+
T Consensus        94 l~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~  157 (157)
T 2gjd_A           94 LSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK  157 (157)
T ss_dssp             CGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred             eecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            999987  799999999999999999999999999999999999999 9999999999999995

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=4.1e-48  Score=277.69  Aligned_cols=130  Identities=34%  Similarity=0.603  Sum_probs=127.3

Q ss_pred             CCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCC
Q 032505            8 GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSS   86 (139)
Q Consensus         8 ~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p   86 (139)
                      +++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|
T Consensus        27 ~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p  106 (159)
T 2bep_A           27 SKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA  106 (159)
T ss_dssp             HTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCT
T ss_pred             CCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCCCCCCEEeChhhhccCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999995 999999999999999


Q ss_pred             cccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           87 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        87 ~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      +++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||.
T Consensus       107 ~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~  158 (159)
T 2bep_A          107 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG  158 (159)
T ss_dssp             TCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999 9999999999999996

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.9e-48  Score=283.05  Aligned_cols=136  Identities=58%  Similarity=1.024  Sum_probs=130.1

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus        41 ~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~iL~  119 (179)
T 1i7k_A           41 TLMM-SGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILK  119 (179)
T ss_dssp             HHHH-HCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTCBBCCGGGT
T ss_pred             HHHh-CCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccccCCeEEcccCc
Confidence            4556 789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES  139 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~~  139 (139)
                      +.|+|+++|.+||.+|++||.+|++++|+|.+||++| +| ++|.++|++++++++..+
T Consensus       120 ~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~~  177 (179)
T 1i7k_A          120 EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTSQ  177 (179)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC--
T ss_pred             CcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999 88 999999999999998753

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=9.8e-48  Score=274.67  Aligned_cols=135  Identities=28%  Similarity=0.539  Sum_probs=130.7

Q ss_pred             cccccCCCCCeEE-eeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSA-FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~-~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      +|++ ++++||++ .++++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus        15 ~l~~-~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL   92 (155)
T 1wzv_A           15 DLQK-KPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII   92 (155)
T ss_dssp             HHHH-SCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBCCCGGG
T ss_pred             HHHh-CCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCCCeEeecCC
Confidence            4566 88999999 888999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             -CCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           81 -QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        81 -~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                       .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++||++
T Consensus        93 ~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~  152 (155)
T 1wzv_A           93 SSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD  152 (155)
T ss_dssp             CTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred             CccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             89999999999999999999999999999999999999999 99999999999999975

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=1.3e-47  Score=275.63  Aligned_cols=136  Identities=38%  Similarity=0.606  Sum_probs=129.5

Q ss_pred             cccccCCCCCeEEeeCC-----CCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEe
Q 032505            2 SLMMSGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC   76 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~-----~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~ic   76 (139)
                      +|++ ++++||++.|..     +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||
T Consensus        18 ~l~~-~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iC   96 (161)
T 2grr_A           18 AWRK-DHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVC   96 (161)
T ss_dssp             HHHH-SCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCTTSBBC
T ss_pred             HHHh-CCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccCCCCCCCeEe
Confidence            4566 899999999863     6899999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCC--cCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           77 LDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        77 l~~l~~--~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      +++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++| ++|.++||+++++||.+
T Consensus        97 l~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~  161 (161)
T 2grr_A           97 LSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS  161 (161)
T ss_dssp             CGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred             ehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence            999976  899999999999999999999999999999999999999 99999999999999964

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=2.2e-47  Score=283.08  Aligned_cols=131  Identities=34%  Similarity=0.598  Sum_probs=127.8

Q ss_pred             CCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCC
Q 032505            8 GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSS   86 (139)
Q Consensus         8 ~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p   86 (139)
                      ++.||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|
T Consensus        24 ~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~~G~iCl~iL~~~W~p  103 (201)
T 3k9o_A           24 SKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA  103 (201)
T ss_dssp             HTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCT
T ss_pred             CCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCcCCCCeeeCcccccCCCC
Confidence            4789999999999999999999999999999999999999999999999999999999999995 999999999999999


Q ss_pred             cccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           87 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        87 ~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      +++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||..
T Consensus       104 ~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~  156 (201)
T 3k9o_A          104 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA  156 (201)
T ss_dssp             TCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999 99999999999999974

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=1.2e-47  Score=286.73  Aligned_cols=136  Identities=32%  Similarity=0.566  Sum_probs=130.6

Q ss_pred             cccccCCCCCeEEeeCCC-CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeec
Q 032505            2 SLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDI   79 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~   79 (139)
                      +|++ ++++||++.|.++ ++++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++
T Consensus        13 ~l~~-~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~i   91 (215)
T 1tte_A           13 AVKD-DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDI   91 (215)
T ss_dssp             HHHT-TTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSSSCCCSST
T ss_pred             HHHh-CCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCCCEEECcc
Confidence            4566 8999999999876 5679999999999999999999999999999999999999999999999999 99999999


Q ss_pred             CCCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           80 LQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        80 l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      |.+.|+|++||.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++||..
T Consensus        92 L~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~  151 (215)
T 1tte_A           92 LRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE  151 (215)
T ss_dssp             TTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999 99999999999999975

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=9.4e-47  Score=272.52  Aligned_cols=134  Identities=24%  Similarity=0.385  Sum_probs=127.5

Q ss_pred             cccccCCCCCeEEeeC-CCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~-~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      +|++ ++++||++.+. ++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus        25 ~l~~-~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL  102 (167)
T 3fn1_B           25 ELEA-NLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL  102 (167)
T ss_dssp             HHGG-GSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCTTCCBCCGGG
T ss_pred             HHHh-CCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCCCCEEechhh
Confidence            4666 89999999964 67899999998 899999999999999999999999999999999999999999999999999


Q ss_pred             CC------cCCCcccHHHHHHHHHHhhCC-CCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           81 QD------KWSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        81 ~~------~W~p~~~i~~iL~~i~~ll~~-p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      ..      +|+|+++|.+||.+|+++|.+ ||+++|+|.+||++|++| ++|.++||+|+++||+
T Consensus       103 ~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~  167 (167)
T 3fn1_B          103 REHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR  167 (167)
T ss_dssp             SBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            75      799999999999999999999 799999999999999999 9999999999999995

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=9.3e-47  Score=276.12  Aligned_cols=135  Identities=36%  Similarity=0.693  Sum_probs=128.6

Q ss_pred             cccccCCCCCeEEe-eCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~-p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      +|++ ++++||++. ++++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus        18 ~l~~-~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iClsiL   96 (183)
T 3rz3_A           18 GLQE-EPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISIL   96 (183)
T ss_dssp             HHHH-SCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCTTSBBCCTTC
T ss_pred             HHHh-CCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCCCCcEehhhc
Confidence            4666 899999999 67889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C-------------CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhc------h-HHHHHHHHHHHHhhcc
Q 032505           81 Q-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN------K-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        81 ~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~------~-~~f~~~~r~~~~~~a~  137 (139)
                      .             ++|+|+++|++||++|++||.+||+++|+|.+||.+|++      + ++|.++||+++++++.
T Consensus        97 ~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v~~~v~~s~~  173 (183)
T 3rz3_A           97 HPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKV  173 (183)
T ss_dssp             --------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred             CcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence            6             789999999999999999999999999999999999998      7 8999999999999865

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=1.6e-46  Score=268.16  Aligned_cols=136  Identities=25%  Similarity=0.576  Sum_probs=127.3

Q ss_pred             CcccccCCCCCeEEee-CCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeec
Q 032505            1 MSLMMSGGDLGVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI   79 (139)
Q Consensus         1 ~~l~~~~~~~gi~~~p-~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~   79 (139)
                      ++|++ ++++|+++.+ .++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++
T Consensus        12 ~~l~~-~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~i   89 (154)
T 1c4z_D           12 EEIRK-CGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV   89 (154)
T ss_dssp             TTCSS-SCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCBBCCTT
T ss_pred             HHHHh-CCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCCCEEECCC
Confidence            46777 8899998665 6789999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             CC-CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           80 LQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        80 l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      |. ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++||++
T Consensus        90 L~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~  150 (154)
T 1c4z_D           90 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK  150 (154)
T ss_dssp             TSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence            96 8999999999999999999999999999999999999999 99999999999999975

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-46  Score=272.21  Aligned_cols=131  Identities=35%  Similarity=0.689  Sum_probs=125.1

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcc-cCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV-DQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni-~~~G~icl~~l   80 (139)
                      +|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||| +.+|.||+++|
T Consensus        34 ~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL  112 (169)
T 1yrv_A           34 DLKE-NNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFL  112 (169)
T ss_dssp             HHHH-HCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCBCCHHH
T ss_pred             HHHh-CCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCCCCeEeehhh
Confidence            4566 889999999999999999999999999999999999999999999999999999999999999 78999999999


Q ss_pred             C--CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHh
Q 032505           81 Q--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFA  134 (139)
Q Consensus        81 ~--~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~  134 (139)
                      .  ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++| ++|.++ |+++++
T Consensus       113 ~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~  168 (169)
T 1yrv_A          113 DNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR  168 (169)
T ss_dssp             HCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred             cCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence            8  8999999999999999999999999999999999999999 999999 888764

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=2.5e-46  Score=285.28  Aligned_cols=131  Identities=34%  Similarity=0.598  Sum_probs=127.9

Q ss_pred             CCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCC
Q 032505            8 GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSS   86 (139)
Q Consensus         8 ~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p   86 (139)
                      ++.||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|
T Consensus        76 ~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~~G~ICL~iL~~~WsP  155 (253)
T 3e46_A           76 SKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA  155 (253)
T ss_dssp             HTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTCCCT
T ss_pred             CCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCccCCCCeeecccccCCCCC
Confidence            4789999999999999999999999999999999999999999999999999999999999995 999999999999999


Q ss_pred             cccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           87 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        87 ~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      +++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||..
T Consensus       156 ~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~  208 (253)
T 3e46_A          156 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA  208 (253)
T ss_dssp             TCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999 99999999999999974

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=2.4e-47  Score=271.89  Aligned_cols=129  Identities=33%  Similarity=0.558  Sum_probs=125.0

Q ss_pred             CCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCCcc
Q 032505           10 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAY   88 (139)
Q Consensus        10 ~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~~   88 (139)
                      .|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.+.|+|++
T Consensus        17 ~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~iCl~il~~~W~p~~   96 (152)
T 2onu_A           17 AGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLY   96 (152)
T ss_dssp             HTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBBCHHHHHHHCCTTC
T ss_pred             CCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeEecccccccCCCCC
Confidence            48889999999999999999999999999999999999999999999999999999999995 99999999999999999


Q ss_pred             cHHHHHHH-HHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           89 DCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        89 ~i~~iL~~-i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      +|.+||.+ |++||.+|++++|+|.+||++|++| ++|.++||+++++||++
T Consensus        97 ~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~  148 (152)
T 2onu_A           97 SLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK  148 (152)
T ss_dssp             CHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCG
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence            99999999 6899999999999999999999999 99999999999999975

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=2e-46  Score=271.97  Aligned_cols=129  Identities=36%  Similarity=0.661  Sum_probs=97.7

Q ss_pred             cccccCCCCCeEEeeCC-CCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~-~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      +|++ ++++||++.|.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus        28 ~l~~-~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~~G~IClsiL  106 (172)
T 2awf_A           28 ELNK-NPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISIL  106 (172)
T ss_dssp             HHHH-SCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCGGG
T ss_pred             HHHh-CCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCCCCcEehhhc
Confidence            4666 899999999975 79999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C-------------CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-H-HHHHHHHHH
Q 032505           81 Q-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-E-DYRKMVQKQ  131 (139)
Q Consensus        81 ~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~-~f~~~~r~~  131 (139)
                      .             +.|+|+++|++||.+|++||.+|++++|+|.+||++|++| + +|.++||+|
T Consensus       107 ~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~  172 (172)
T 2awf_A          107 HEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC  172 (172)
T ss_dssp             SCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred             CCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence            6             6899999999999999999999999999999999999999 9 999999975

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.2e-45  Score=265.14  Aligned_cols=129  Identities=32%  Similarity=0.580  Sum_probs=124.3

Q ss_pred             CCCCCeEEe-eCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCCCcCC
Q 032505            7 GGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS   85 (139)
Q Consensus         7 ~~~~gi~~~-p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~   85 (139)
                      ++++|+++. |+++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+
T Consensus        19 ~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~   97 (160)
T 1y8x_A           19 NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWK   97 (160)
T ss_dssp             CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCC
T ss_pred             CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCCCCeEEcccchhhcc
Confidence            567899998 7899999999988 99999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505           86 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE  136 (139)
Q Consensus        86 p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a  136 (139)
                      |+++|.+||.+|+++|.+|++++|+|.+||.+|++| ++|.++||++++...
T Consensus        98 p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~~  149 (160)
T 1y8x_A           98 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY  149 (160)
T ss_dssp             TTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEE
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCc
Confidence            999999999999999999999999999999999999 999999999998643

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.9e-45  Score=267.52  Aligned_cols=129  Identities=31%  Similarity=0.552  Sum_probs=124.5

Q ss_pred             CCCCCeEEe-eCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCCCcCC
Q 032505            7 GGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS   85 (139)
Q Consensus         7 ~~~~gi~~~-p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~   85 (139)
                      ++++|+++. |+++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+
T Consensus        39 ~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~  117 (180)
T 2nvu_C           39 NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWK  117 (180)
T ss_dssp             CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTSBBCCGGGTTSCC
T ss_pred             CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCCCCcEEcccccccCC
Confidence            577899998 8899999999998 99999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505           86 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE  136 (139)
Q Consensus        86 p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a  136 (139)
                      |+++|.+||.+|+++|.+|++++|+|.+||.+|++| ++|.++||++++...
T Consensus       118 p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~~  169 (180)
T 2nvu_C          118 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY  169 (180)
T ss_dssp             TTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSEE
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999 999999999998653

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.4e-46  Score=274.02  Aligned_cols=128  Identities=33%  Similarity=0.615  Sum_probs=124.1

Q ss_pred             CCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCCcc
Q 032505           10 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAY   88 (139)
Q Consensus        10 ~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~~   88 (139)
                      +|+++.+. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|++
T Consensus        40 ~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ICL~iL~~~WsP~~  118 (179)
T 2z5d_A           40 SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY  118 (179)
T ss_dssp             SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTC
T ss_pred             CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCeEeccccccCCCCCC
Confidence            58888887 67999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             cHHHHHHH-HHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           89 DCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        89 ~i~~iL~~-i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      +|++||.+ |++||.+|++++|+|.+||++|++| ++|.++||+|+++||++
T Consensus       119 ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~  170 (179)
T 2z5d_A          119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE  170 (179)
T ss_dssp             CTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence            99999999 9999999999999999999999999 99999999999999974

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=1.4e-44  Score=262.35  Aligned_cols=127  Identities=28%  Similarity=0.535  Sum_probs=122.6

Q ss_pred             CeEEee-CCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEec-cccCCccc-CCCcEeeecCC-CcCCC
Q 032505           11 GVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET-MCFHPNVD-QYGNICLDILQ-DKWSS   86 (139)
Q Consensus        11 gi~~~p-~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t-~i~Hpni~-~~G~icl~~l~-~~W~p   86 (139)
                      |+++.| +++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.| +||||||+ .+|.||+++|. ++|+|
T Consensus        36 ~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p  115 (172)
T 2y9m_A           36 IESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTP  115 (172)
T ss_dssp             EEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECTTSCCCTTEETTTTEECCGGGSTTTCCT
T ss_pred             eEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEeeCCeecCCCcCCCCEEeccccCCCCCCC
Confidence            577888 7889999999999999999999999999999999999999999999 99999996 79999999998 89999


Q ss_pred             cccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhc-h-HHHHHHHHHHHHhhcc
Q 032505           87 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN-K-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        87 ~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~-~-~~f~~~~r~~~~~~a~  137 (139)
                      +++|.+||.+|+++|.+|++++|+|.+||++|++ | ++|.++||+|++++++
T Consensus       116 ~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~~~~~  168 (172)
T 2y9m_A          116 VWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAERER  168 (172)
T ss_dssp             TCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHHHHHC
T ss_pred             cCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999 9 9999999999999875

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=6.2e-45  Score=293.56  Aligned_cols=136  Identities=38%  Similarity=0.691  Sum_probs=132.7

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++|+++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus        14 ~l~~-~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~   92 (399)
T 4ddg_A           14 DLAR-DPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILR   92 (399)
T ss_dssp             HHHH-SCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCTTCBBCCGGGT
T ss_pred             HHHh-CCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCCCCeEeCcccc
Confidence            4667 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      ++|+|++||.+||.+|+++|.+||+++|+|.+||++|++| ++|.++||+|+++||..
T Consensus        93 ~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~  150 (399)
T 4ddg_A           93 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG  150 (399)
T ss_dssp             TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred             cCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999 99999999999999975

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=5.1e-45  Score=264.27  Aligned_cols=131  Identities=31%  Similarity=0.582  Sum_probs=122.5

Q ss_pred             ccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCC
Q 032505            3 LMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQ   81 (139)
Q Consensus         3 l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~   81 (139)
                      |++ ++ .++   +.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.
T Consensus        24 l~~-~~-~~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~iCl~iL~   98 (171)
T 1yf9_A           24 LCN-ST-RKV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVIN   98 (171)
T ss_dssp             HHS-SS-SCE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHH
T ss_pred             HHh-CC-CCC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeEeccccc
Confidence            445 55 344   35789999999999999999999999999999999999999999999999999995 9999999999


Q ss_pred             CcCCCcccHHHHHHHH-HHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           82 DKWSSAYDCRTILLSI-QSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i-~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      ++|+|+++|++||.+| ++||.+|++++|+|.+||++|++| ++|.++||+++++||++
T Consensus        99 ~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~  157 (171)
T 1yf9_A           99 QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP  157 (171)
T ss_dssp             HHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred             cCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCh
Confidence            9999999999999997 799999999999999999999999 99999999999999974

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=9.9e-44  Score=261.35  Aligned_cols=129  Identities=32%  Similarity=0.514  Sum_probs=124.2

Q ss_pred             CCCCeEEe----eCCCCce---EEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            8 GDLGVSAF----PEGESIF---TWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         8 ~~~gi~~~----p~~~~~~---~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      +++|+++.    |+++|++   +|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus        43 ~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL  121 (190)
T 3o2u_A           43 LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNIL  121 (190)
T ss_dssp             CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTSBBCCGGG
T ss_pred             CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcccCCCCCCCeEechhc
Confidence            67899998    8899999   9999997 88899999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           81 QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        81 ~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      .++|+|+++|++||.+|+++|.+||+++|+|.+||++|++| ++|.++||+|++.+..
T Consensus       122 ~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~~~  179 (190)
T 3o2u_A          122 REDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSI  179 (190)
T ss_dssp             TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTCEE
T ss_pred             cCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999 9999999999987654

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=3.3e-42  Score=248.73  Aligned_cols=121  Identities=25%  Similarity=0.529  Sum_probs=115.6

Q ss_pred             CCCeEEeeCCCCceEEEEEEecCCCCCCC--CcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCCCcCCC
Q 032505            9 DLGVSAFPEGESIFTWIGTIEGGKGTMYE--GLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSS   86 (139)
Q Consensus         9 ~~gi~~~p~~~~~~~w~~~i~Gp~~t~ye--gg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~p   86 (139)
                      +.|+++.+.++|+++|+++|.||++|||+  ||.|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|
T Consensus        37 ~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p  116 (167)
T 4ds2_A           37 HSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTP  116 (167)
T ss_dssp             SSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSCCCCSSCCTTSCCCTHHHHTTCCT
T ss_pred             CCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCCcccccCCCCCEEEcccCcCCCCC
Confidence            78999999999999999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHH-HHHHHhhCC--CCCCCcccHHHHHHhhch-HHHHHHHH
Q 032505           87 AYDCRTIL-LSIQSLLGE--PNPESPLNSYAAALLNNK-EDYRKMVQ  129 (139)
Q Consensus        87 ~~~i~~iL-~~i~~ll~~--p~~~~p~N~~a~~~~~~~-~~f~~~~r  129 (139)
                      +++++++| ..|++|+.+  |++++|+|.+||++|++| ++|.++||
T Consensus       117 ~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr  163 (167)
T 4ds2_A          117 DQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR  163 (167)
T ss_dssp             TSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred             CCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence            99999965 567888874  899999999999999999 99999998

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=4e-41  Score=240.59  Aligned_cols=118  Identities=30%  Similarity=0.443  Sum_probs=107.8

Q ss_pred             cccccC-CCCCeEEeeCC-C--CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcE--
Q 032505            2 SLMMSG-GDLGVSAFPEG-E--SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI--   75 (139)
Q Consensus         2 ~l~~~~-~~~gi~~~p~~-~--~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~i--   75 (139)
                      +|++ + +++||++.+.. +  |+++|+++|.||++||||||+|+++|.||++||++||+|+|.|+||||||+.+|.|  
T Consensus        32 ~l~~-~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~ici  110 (156)
T 2q0v_A           32 RGQK-GNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIK  110 (156)
T ss_dssp             HHHC-C-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTSBBCG
T ss_pred             HHHh-CCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCCccCCeEeh
Confidence            3555 6 78899999853 3  59999999999999999999999999999999999999999999999999999999  


Q ss_pred             -eeecCCCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch
Q 032505           76 -CLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK  121 (139)
Q Consensus        76 -cl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~  121 (139)
                       |+++|+ +|+|+++|++||.+|+++|.+|++++|+|.+||.+|++|
T Consensus       111 sCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n  156 (156)
T 2q0v_A          111 NNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN  156 (156)
T ss_dssp             GGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred             hhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence             899986 599999999999999999999999999999999999875

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=2e-40  Score=259.52  Aligned_cols=135  Identities=27%  Similarity=0.411  Sum_probs=124.4

Q ss_pred             ccccCCCC----CeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc-----ccCCcccCCC
Q 032505            3 LMMSGGDL----GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM-----CFHPNVDQYG   73 (139)
Q Consensus         3 l~~~~~~~----gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~-----i~Hpni~~~G   73 (139)
                      |++ ++++    ++.+.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+     +|||||+.+|
T Consensus        88 L~k-~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G  166 (323)
T 3ceg_A           88 LST-SLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDG  166 (323)
T ss_dssp             HHH-HCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTC
T ss_pred             HHh-CCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCcCC
Confidence            445 6665    45677889999999999999999999999999999999999999999999998     9999999999


Q ss_pred             cEeeecCC-------CcCCCcc-cHHHHHHHHHHhhC--CCCCCCcccHHH--HHHhhch-HHHHHHHHHHHHhhccC
Q 032505           74 NICLDILQ-------DKWSSAY-DCRTILLSIQSLLG--EPNPESPLNSYA--AALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        74 ~icl~~l~-------~~W~p~~-~i~~iL~~i~~ll~--~p~~~~p~N~~a--~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      .||+++|.       +.|+|++ +|.+||.+|++||.  +|++++|+|.++  +.++.+| ++|.++||+++++||+.
T Consensus       167 ~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~~  244 (323)
T 3ceg_A          167 KVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAML  244 (323)
T ss_dssp             BBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             eEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence            99999997       6899999 89999999999996  788899999986  6789999 99999999999999973

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=6.6e-40  Score=226.61  Aligned_cols=106  Identities=30%  Similarity=0.514  Sum_probs=96.8

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccc-cCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i-~Hpni~~~G~icl~~l   80 (139)
                      +|++ ++++|+++.+.++|+++|+++|.||++||||||.|+++|.||++||++||+|+|.|++ |||||+.+|.||+++|
T Consensus        17 ~l~~-~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~iCl~iL   95 (125)
T 2fo3_A           17 NFLN-NPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLL   95 (125)
T ss_dssp             HHHH-SCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSBBCCGGG
T ss_pred             HHHh-CCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCCCCEEEchhc
Confidence            4566 8899999999999999999999999999999999999999999999999999999996 9999999999999999


Q ss_pred             CCcCCCcccHHHHHHHHHHhhCCCCCCC
Q 032505           81 QDKWSSAYDCRTILLSIQSLLGEPNPES  108 (139)
Q Consensus        81 ~~~W~p~~~i~~iL~~i~~ll~~p~~~~  108 (139)
                      .++|+|++++++||.+|+++|.+|+...
T Consensus        96 ~~~W~P~~~i~~vl~si~~ll~~p~~~~  123 (125)
T 2fo3_A           96 GDDYNPSLSISGLVLSIISMLSSAKEKK  123 (125)
T ss_dssp             TTTCCTTCCHHHHHHHHHHHHC------
T ss_pred             CCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence            9999999999999999999999998754

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=4.5e-39  Score=225.37  Aligned_cols=104  Identities=29%  Similarity=0.513  Sum_probs=99.8

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccc-cCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i-~Hpni~~~G~icl~~l   80 (139)
                      +|++ ++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+.+|.||+++|
T Consensus        31 ~l~~-~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~ICl~iL  109 (136)
T 2h2y_A           31 NFLK-NPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVL  109 (136)
T ss_dssp             HHHH-SCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCTTCCBCCGGG
T ss_pred             HHHh-CCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCCCCEEECccc
Confidence            4566 8899999999999999999999999999999999999999999999999999999996 9999999999999999


Q ss_pred             CCcCCCcccHHHHHHHHHHhhCCCCC
Q 032505           81 QDKWSSAYDCRTILLSIQSLLGEPNP  106 (139)
Q Consensus        81 ~~~W~p~~~i~~iL~~i~~ll~~p~~  106 (139)
                      .++|+|+++|++||.+|++||.+|+.
T Consensus       110 ~~~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A          110 GDDYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             TTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             cCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence            99999999999999999999999874

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=2e-39  Score=232.48  Aligned_cols=113  Identities=27%  Similarity=0.397  Sum_probs=104.5

Q ss_pred             cccccCCCCC-eEEee-CCCC--ceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCccc-CCCcEe
Q 032505            2 SLMMSGGDLG-VSAFP-EGES--IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNIC   76 (139)
Q Consensus         2 ~l~~~~~~~g-i~~~p-~~~~--~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~-~~G~ic   76 (139)
                      +|++ ++++| +++.+ +++|  +++|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+ .+|.||
T Consensus        36 ~l~~-~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~IC  114 (160)
T 2a4d_A           36 EGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVD  114 (160)
T ss_dssp             HHHS-CCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBC
T ss_pred             HHHh-CCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCEECCCCEEe
Confidence            4556 78888 78887 4454  99999999999999999999999999999999999999999999999999 599999


Q ss_pred             eecCC--CcCCCcccHHHHHHHHHHhhC-CCCCCCcccHHHH
Q 032505           77 LDILQ--DKWSSAYDCRTILLSIQSLLG-EPNPESPLNSYAA  115 (139)
Q Consensus        77 l~~l~--~~W~p~~~i~~iL~~i~~ll~-~p~~~~p~N~~a~  115 (139)
                      +++|.  ++|+|+++|++||.+|+++|. +||.++|+|.|||
T Consensus       115 l~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  156 (160)
T 2a4d_A          115 PRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  156 (160)
T ss_dssp             GGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred             hhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence            99998  899999999999999999996 7999999999987

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=3.2e-40  Score=231.69  Aligned_cols=115  Identities=25%  Similarity=0.393  Sum_probs=103.8

Q ss_pred             cccccC-CCCCeEEeeCC-C--CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCC-CcE-
Q 032505            2 SLMMSG-GDLGVSAFPEG-E--SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNI-   75 (139)
Q Consensus         2 ~l~~~~-~~~gi~~~p~~-~--~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~-G~i-   75 (139)
                      +|++ + +++|+++.+.+ +  |+++|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+.+ |.| 
T Consensus        17 ~l~~-~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~~G~i~   95 (138)
T 1jat_B           17 KGEK-GFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQ   95 (138)
T ss_dssp             HHHC-----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBC
T ss_pred             HHHh-cCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEeCCCCEEe
Confidence            3555 6 78999999953 3  59999999999999999999999999999999999999999999999999996 999 


Q ss_pred             -eeecCCCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHh
Q 032505           76 -CLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL  118 (139)
Q Consensus        76 -cl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~  118 (139)
                       |+++++ +|+|+++|++||.+|+++|.+|++++|+|.+||.+|
T Consensus        96 ~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y  138 (138)
T 1jat_B           96 TDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF  138 (138)
T ss_dssp             TTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             eecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence             899885 899999999999999999999999999999988655

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=6.2e-39  Score=232.04  Aligned_cols=113  Identities=27%  Similarity=0.397  Sum_probs=104.1

Q ss_pred             cccccCCCCC-eEEee-CCCC--ceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCccc-CCCcEe
Q 032505            2 SLMMSGGDLG-VSAFP-EGES--IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNIC   76 (139)
Q Consensus         2 ~l~~~~~~~g-i~~~p-~~~~--~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~-~~G~ic   76 (139)
                      +|++ ++++| +++.+ +++|  +++|+++|.||++||||||+|+++|.||++||++||+|+|.|+||||||+ .+|.||
T Consensus        46 ~l~~-~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~IC  124 (170)
T 2hlw_A           46 EGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVD  124 (170)
T ss_dssp             HHHH-CCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSSBCSSSCBBC
T ss_pred             HHHh-CCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCCEeCCCCEEE
Confidence            3556 77788 77887 4554  99999999999999999999999999999999999999999999999999 699999


Q ss_pred             eecCC--CcCCCcccHHHHHHHHHHhhC-CCCCCCcccHHHH
Q 032505           77 LDILQ--DKWSSAYDCRTILLSIQSLLG-EPNPESPLNSYAA  115 (139)
Q Consensus        77 l~~l~--~~W~p~~~i~~iL~~i~~ll~-~p~~~~p~N~~a~  115 (139)
                      +++|.  ++|+|+++|++||.+|+++|. .||.++|+|.|||
T Consensus       125 l~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  166 (170)
T 2hlw_A          125 PRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  166 (170)
T ss_dssp             TTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred             hhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence            99997  899999999999999999997 6999999999987

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=5.6e-38  Score=219.71  Aligned_cols=100  Identities=39%  Similarity=0.706  Sum_probs=95.2

Q ss_pred             cccccCCCCCeEEe--eCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccc--CCcccCCCcEee
Q 032505            2 SLMMSGGDLGVSAF--PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF--HPNVDQYGNICL   77 (139)
Q Consensus         2 ~l~~~~~~~gi~~~--p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~--Hpni~~~G~icl   77 (139)
                      +|++ ++++||++.  +.++|+++|+++|.||+|||||||.|+++|.||++||++||+|+|.|++|  ||||+.+|.||+
T Consensus        33 ~l~~-~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~~~G~ICL  111 (136)
T 2a7l_A           33 ALQN-DPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICL  111 (136)
T ss_dssp             HHHH-SCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCTTCBBCC
T ss_pred             HHHh-CCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCCCCCeEEc
Confidence            4566 899999965  88999999999999999999999999999999999999999999999999  999999999999


Q ss_pred             ecCCCcCCCcccHHHHHHHHHHhhC
Q 032505           78 DILQDKWSSAYDCRTILLSIQSLLG  102 (139)
Q Consensus        78 ~~l~~~W~p~~~i~~iL~~i~~ll~  102 (139)
                      ++|.++|+|+++|++||.+|++||.
T Consensus       112 ~iL~~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A          112 SILTEDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             GGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             hhcCCCCCCCCcHHHHHHHHHHHhC
Confidence            9999999999999999999999984

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1e-35  Score=218.16  Aligned_cols=105  Identities=30%  Similarity=0.484  Sum_probs=93.0

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC-
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l-   80 (139)
                      +|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+  ||||+.+|.||+++| 
T Consensus        25 ~l~~-~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~~G~ICL~iL~  101 (187)
T 2f4w_A           25 RIKK-DPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITD  101 (187)
T ss_dssp             HHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCTTSCBC-----
T ss_pred             HHHh-CCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--CceeccCCeEeeeccc
Confidence            4566 899999999999999999999999999999999999999999999999999999999  999999999999999 


Q ss_pred             --CCcCCCcccHHHHHHHHHHhhCCCCCCCc
Q 032505           81 --QDKWSSAYDCRTILLSIQSLLGEPNPESP  109 (139)
Q Consensus        81 --~~~W~p~~~i~~iL~~i~~ll~~p~~~~p  109 (139)
                        .+.|+|+++|.+||.+|+++|.+|+++..
T Consensus       102 ~~~~~W~P~~ti~~vL~si~sll~~p~p~~g  132 (187)
T 2f4w_A          102 FHPDTWNPAWSVSTILTGLLSFMVEKGPTLG  132 (187)
T ss_dssp             -----CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred             cCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence              68999999999999999999999887643

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=100.00  E-value=7.5e-37  Score=224.01  Aligned_cols=126  Identities=18%  Similarity=0.330  Sum_probs=110.1

Q ss_pred             cccccCC---CCCeEEeeCCCCceEEEEEEecC-CCCCCCC-----------cEEEEEEEcCCCCCCCCCeeEEeccccC
Q 032505            2 SLMMSGG---DLGVSAFPEGESIFTWIGTIEGG-KGTMYEG-----------LSYKLSLRFPLDYPFKPPQVKFETMCFH   66 (139)
Q Consensus         2 ~l~~~~~---~~gi~~~p~~~~~~~w~~~i~Gp-~~t~yeg-----------g~f~~~i~f~~~YP~~pP~v~f~t~i~H   66 (139)
                      +|++ ++   +.||++.|.++|+++|+++|.|| ++|||+|           |.|+++|.||++||++||+|+|.|++||
T Consensus        38 ~l~~-~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f~tpi~h  116 (186)
T 1zuo_A           38 DIYR-SQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLS  116 (186)
T ss_dssp             HHHT-SHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESCEE
T ss_pred             HHHh-CCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEEeCCccC
Confidence            3455 66   68899999999999999999998 9999998           8999999999999999999999999999


Q ss_pred             C-cccCCCcEeeecCC-CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505           67 P-NVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE  136 (139)
Q Consensus        67 p-ni~~~G~icl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a  136 (139)
                      | ||+.+|.||+++|. ++|+|+++|++||++|+++|.+|+...        .+.++ .+|.+++++++.+.+
T Consensus       117 PnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~~~~~~~~  181 (186)
T 1zuo_A          117 GGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARAQQSYNSI  181 (186)
T ss_dssp             STTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHHHHHHHHH
T ss_pred             CCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHHHHHHHHH
Confidence            9 69999999999997 789999999999999999999885432        34555 777777777766543

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.89  E-value=5.6e-25  Score=156.56  Aligned_cols=99  Identities=14%  Similarity=0.272  Sum_probs=83.4

Q ss_pred             EeeCCCCceEEEEEEecCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeEEecc-ccCCcccCCCcEeeecC-C
Q 032505           14 AFPEGESIFTWIGTIEGGKGTMYEGL----------SYKLSLRFPLDYPFKPPQVKFETM-CFHPNVDQYGNICLDIL-Q   81 (139)
Q Consensus        14 ~~p~~~~~~~w~~~i~Gp~~t~yegg----------~f~~~i~f~~~YP~~pP~v~f~t~-i~Hpni~~~G~icl~~l-~   81 (139)
                      +.+..+|+..|.+.+.||+||+|+||          .|+++|.||++||.+||+|+|.++ ++||||+.+|+||+|++ .
T Consensus        48 v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpnmY~~G~ICLdIL~k  127 (172)
T 2z6o_A           48 VENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFK  127 (172)
T ss_dssp             HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSBCTTSBBCCCTTHH
T ss_pred             hccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCCCCCCCcEechhhcc
Confidence            44556799999999999999999999          999999999999999999999998 99999999999999999 4


Q ss_pred             C---cCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhc
Q 032505           82 D---KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN  120 (139)
Q Consensus        82 ~---~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~  120 (139)
                      .   .|+|.++|..+|.-        .....+..|+..+...
T Consensus       128 p~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~~  161 (172)
T 2z6o_A          128 PLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQK  161 (172)
T ss_dssp             HHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHHH
T ss_pred             ccccccCCccCHHHHHhh--------ccCchhhhhhHHHHHc
Confidence            3   45699999998843        2344455666655543

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.83  E-value=1.3e-20  Score=134.64  Aligned_cols=95  Identities=26%  Similarity=0.416  Sum_probs=82.9

Q ss_pred             EEeeCCCCceEEEEEEecCCCCCCCCcE---EEEEEEcCCCCCCCCCeeEEec-------c---cc-CCcccCCCcEeee
Q 032505           13 SAFPEGESIFTWIGTIEGGKGTMYEGLS---YKLSLRFPLDYPFKPPQVKFET-------M---CF-HPNVDQYGNICLD   78 (139)
Q Consensus        13 ~~~p~~~~~~~w~~~i~Gp~~t~yegg~---f~~~i~f~~~YP~~pP~v~f~t-------~---i~-Hpni~~~G~icl~   78 (139)
                      .+...+|...++-+.+.|.-.++|+|+.   |.+.|.||++||++||.|.|.+       +   |+ |||||.+|+||++
T Consensus        52 ~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lp  131 (162)
T 3r3q_A           52 RVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALP  131 (162)
T ss_dssp             EEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCG
T ss_pred             eeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCc
Confidence            3445567777777888888789999999   8899999999999999998865       1   77 9999999999999


Q ss_pred             cCCCcCCC-cccHHHHHHHHHHhhCCCCCCC
Q 032505           79 ILQDKWSS-AYDCRTILLSIQSLLGEPNPES  108 (139)
Q Consensus        79 ~l~~~W~p-~~~i~~iL~~i~~ll~~p~~~~  108 (139)
                      +| .+|++ +.++.++|.+|+++|.+|+++.
T Consensus       132 yL-~~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          132 IL-HAWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             GG-GSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             cc-ccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence            99 56999 5799999999999999999875

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.63  E-value=4e-17  Score=113.99  Aligned_cols=64  Identities=19%  Similarity=0.505  Sum_probs=59.0

Q ss_pred             eEEEEEEecCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeEEecc-ccCCcccCCCcEeeecCCCcCCCcc
Q 032505           22 FTWIGTIEGGKGTMYEGL----------SYKLSLRFPLDYPFKPPQVKFETM-CFHPNVDQYGNICLDILQDKWSSAY   88 (139)
Q Consensus        22 ~~w~~~i~Gp~~t~yegg----------~f~~~i~f~~~YP~~pP~v~f~t~-i~Hpni~~~G~icl~~l~~~W~p~~   88 (139)
                      ..|...+.||.||+|+|+          .|++++.||.+||.+||+|+|.+. .+|||++.+|+||++++   |+|.+
T Consensus        58 ~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~kmYr~GkICLdIh---wkPlW  132 (168)
T 3kpa_A           58 SHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGGKICMTTH---FFPLW  132 (168)
T ss_dssp             CCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSEETTTEECCCTT---HHHHH
T ss_pred             CCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCccccCCCcEEeccc---cchhh
Confidence            469999999999999999          999999999999999999999995 89999999999999986   66654

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.61  E-value=1.3e-15  Score=107.08  Aligned_cols=79  Identities=27%  Similarity=0.516  Sum_probs=70.5

Q ss_pred             CCCceEEEEEEecCCCCCCCCcEEEE--EEEcCCCCCCCCCeeEEecc------ccCCcccCCCcEeeecCCCcCCC-cc
Q 032505           18 GESIFTWIGTIEGGKGTMYEGLSYKL--SLRFPLDYPFKPPQVKFETM------CFHPNVDQYGNICLDILQDKWSS-AY   88 (139)
Q Consensus        18 ~~~~~~w~~~i~Gp~~t~yegg~f~~--~i~f~~~YP~~pP~v~f~t~------i~Hpni~~~G~icl~~l~~~W~p-~~   88 (139)
                      ..++..|.++|.    .+|+|+.|.+  .|.||++||++||.| |.++      ..|||||.+|+||+++|.+ |++ ..
T Consensus        50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~s  123 (146)
T 3obq_A           50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQS  123 (146)
T ss_dssp             TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTTC
T ss_pred             hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCCC
Confidence            358899999997    6799999995  999999999999999 6655      5899999999999999955 987 78


Q ss_pred             cHHHHHHHHHHhhC
Q 032505           89 DCRTILLSIQSLLG  102 (139)
Q Consensus        89 ~i~~iL~~i~~ll~  102 (139)
                      ++.+++..|+++|.
T Consensus       124 nL~~ll~~l~~~F~  137 (146)
T 3obq_A          124 DLLGLIQVMIVVFG  137 (146)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999999997

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.89  E-value=0.052  Score=36.12  Aligned_cols=41  Identities=17%  Similarity=0.256  Sum_probs=28.0

Q ss_pred             eEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEec
Q 032505           22 FTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET   62 (139)
Q Consensus        22 ~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t   62 (139)
                      ..+.+.|..-.+..-+.-.+.+.+.||++||.+||.+...+
T Consensus        38 ~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           38 PSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             CEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             CEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            45555555322222234478899999999999999987654

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=94.40  E-value=0.25  Score=34.09  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.7

Q ss_pred             EEEEEEEcCCCCCCCCCeeEEec
Q 032505           40 SYKLSLRFPLDYPFKPPQVKFET   62 (139)
Q Consensus        40 ~f~~~i~f~~~YP~~pP~v~f~t   62 (139)
                      .+.+.|.+|.+||..+|.+...+
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~   98 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRS   98 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEEC
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEe
Confidence            79999999999999999997554

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.02  E-value=0.39  Score=31.80  Aligned_cols=40  Identities=15%  Similarity=0.236  Sum_probs=27.8

Q ss_pred             ceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEe
Q 032505           21 IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFE   61 (139)
Q Consensus        21 ~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~   61 (139)
                      ...+.+.|..... .-..-.+.+.+.+|++||..+|.+...
T Consensus        39 ~~~f~i~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~   78 (128)
T 2ebk_A           39 GTVFRIHTKAEGF-MDADIPLELVFHLPVNYPSCLPGISIN   78 (128)
T ss_dssp             CEEEEEEEECCTT-TTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred             CCeEEEEecCCCC-CCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence            4567777763321 111247899999999999999998644

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=93.86  E-value=0.24  Score=32.80  Aligned_cols=42  Identities=19%  Similarity=0.381  Sum_probs=28.1

Q ss_pred             ceEEEEEEecCCCCCCC--CcEEEEEEEcCCCCCCCCCeeEEec
Q 032505           21 IFTWIGTIEGGKGTMYE--GLSYKLSLRFPLDYPFKPPQVKFET   62 (139)
Q Consensus        21 ~~~w~~~i~Gp~~t~ye--gg~f~~~i~f~~~YP~~pP~v~f~t   62 (139)
                      ...+.+.+..+.+..-+  .-.+.+.|.+|++||..+|.+...+
T Consensus        39 ~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~   82 (128)
T 2day_A           39 PWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   82 (128)
T ss_dssp             CEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             CeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence            34555556532221111  2478899999999999999998775

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=93.80  E-value=0.21  Score=33.57  Aligned_cols=41  Identities=17%  Similarity=0.275  Sum_probs=28.8

Q ss_pred             ceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEec
Q 032505           21 IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET   62 (139)
Q Consensus        21 ~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t   62 (139)
                      ...+.+.|.+..+ .-..-.+.+.+.+|++||..+|.+...+
T Consensus        45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A           45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN   85 (138)
T ss_dssp             CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred             CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence            3456677763322 1123478899999999999999998754

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=91.73  E-value=1.6  Score=31.32  Aligned_cols=65  Identities=15%  Similarity=0.224  Sum_probs=48.3

Q ss_pred             CCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCCCcCCCcccHHHHHHHH
Q 032505           18 GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSI   97 (139)
Q Consensus        18 ~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~p~~~i~~iL~~i   97 (139)
                      +.++...++.+..-.     |....++|.++.+||.++|.+...-+.  |.            .-.|++..++.+++...
T Consensus        22 d~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~------------~~~w~~~ssL~~v~~qF   82 (186)
T 3zqs_A           22 DTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--PF------------CASWTPQSSLISIYSQF   82 (186)
T ss_dssp             CTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--CC------------CCCCCTTCCHHHHHHHH
T ss_pred             cCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc------------ccccCCCccHHHHHHHH
Confidence            457788888887444     679999999999999999987643332  11            13799888888887776


Q ss_pred             HHhh
Q 032505           98 QSLL  101 (139)
Q Consensus        98 ~~ll  101 (139)
                      +..+
T Consensus        83 ~~~L   86 (186)
T 3zqs_A           83 LAAI   86 (186)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6665

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=90.95  E-value=0.15  Score=34.22  Aligned_cols=23  Identities=22%  Similarity=0.557  Sum_probs=20.5

Q ss_pred             cEEEEEEEcCCCCCCCCCeeEEe
Q 032505           39 LSYKLSLRFPLDYPFKPPQVKFE   61 (139)
Q Consensus        39 g~f~~~i~f~~~YP~~pP~v~f~   61 (139)
                      -.+.+.|.||++||..+|.|...
T Consensus        63 ~~~~L~v~~p~~YP~~~P~i~l~   85 (137)
T 1ukx_A           63 VQVELRVKCPPTYPDVVPEIDLK   85 (137)
T ss_dssp             CEEEEEECCCTTTTSSCCCCEEE
T ss_pred             eEEEEEEECCCCCCCCCCcEEEe
Confidence            46889999999999999999874

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=89.59  E-value=0.29  Score=33.53  Aligned_cols=24  Identities=21%  Similarity=0.549  Sum_probs=20.8

Q ss_pred             cEEEEEEEcCCCCCCCCCeeEEec
Q 032505           39 LSYKLSLRFPLDYPFKPPQVKFET   62 (139)
Q Consensus        39 g~f~~~i~f~~~YP~~pP~v~f~t   62 (139)
                      -.+.+.+.+|.+||..||.+....
T Consensus        73 ~~l~L~v~lP~~YP~~~P~i~l~~   96 (152)
T 2dax_A           73 AMFSLACILPFKYPAVLPEITVRS   96 (152)
T ss_dssp             EEEEEEEEECSSTTSSCCCCEEEC
T ss_pred             ceEEEEEECCCCCCCCCCeEEEEc
Confidence            368899999999999999998665

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=85.43  E-value=0.16  Score=33.34  Aligned_cols=32  Identities=3%  Similarity=0.040  Sum_probs=0.0

Q ss_pred             CCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505          105 NPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE  136 (139)
Q Consensus       105 ~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a  136 (139)
                      ....|.++++|++|.++ +.|.++||.|+.-+|
T Consensus        22 ~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a   54 (108)
T 2cwb_A           22 TTTEAVDAATAEKVFKQYANDNGVDGEWTYDDA   54 (108)
T ss_dssp             ---------------------------------
T ss_pred             ccCCchhHHHHHHHHhchhccccccccccccCc
Confidence            35678999999999999 999999999996555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	7e-38
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	3e-35
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	4e-35
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-33
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	3e-33
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	6e-32
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	1e-31
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	1e-31
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	2e-31
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	3e-31
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-30
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	1e-28
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	2e-28
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	4e-28
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	4e-28
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	5e-28
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	6e-28
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	8e-28
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	9e-28
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	2e-27
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	2e-27
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	6e-27
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	4e-26
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	6e-26
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	4e-25
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	6e-25
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	2e-23
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	6e-23
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	9e-23
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	1e-21
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	8e-21

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score =  124 bits (311), Expect = 7e-38
 Identities = 77/132 (58%), Positives = 108/132 (81%), Gaps = 1/132 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
            +L+MSG D G++AFP+G+++F W+ T++G K T+YE L YKL+L FP DYP+KPP VKF
Sbjct: 19  RTLLMSG-DPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKF 77

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
            T C+HPNVDQ GNICLDIL++ W+++YD RTILLS+QSLLGEPN  SPLN+ AA + +N
Sbjct: 78  TTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSN 137

Query: 121 KEDYRKMVQKQY 132
           + +Y+K++ ++Y
Sbjct: 138 QTEYKKVLHEKY 149

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score =  116 bits (292), Expect = 3e-35
 Identities = 82/132 (62%), Positives = 101/132 (76%), Gaps = 1/132 (0%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF
Sbjct: 11  MTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 69

Query: 61  ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 120
            T C+HPNVD  GNI LDIL++KWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct: 70  LTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 129

Query: 121 KEDYRKMVQKQY 132
              ++K +Q+ Y
Sbjct: 130 PTAFKKYLQETY 141

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score =  116 bits (292), Expect = 4e-35
 Identities = 59/129 (45%), Positives = 76/129 (58%), Gaps = 1/129 (0%)

Query: 4   MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 63
           M      GVSA P  +++  W   I G   T YE  +++L L F  +YP KPP VKF + 
Sbjct: 15  MKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE 74

Query: 64  CFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKE 122
            FHPNV   G ICLDILQ++W+  YD  +IL SIQSL  +PNP SP N  AA L  ++K 
Sbjct: 75  MFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKS 134

Query: 123 DYRKMVQKQ 131
            Y K V++ 
Sbjct: 135 QYVKRVKET 143

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score =  112 bits (282), Expect = 2e-33
 Identities = 52/129 (40%), Positives = 74/129 (57%), Gaps = 1/129 (0%)

Query: 4   MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 63
           +        SA P+G++I+ W  TI G  G++YEG  + L + F  DYPFKPP+V F T 
Sbjct: 14  ITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTR 73

Query: 64  CFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKE 122
            +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  PL    A     N+ 
Sbjct: 74  IYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRA 133

Query: 123 DYRKMVQKQ 131
           ++ +M ++ 
Sbjct: 134 EHDRMARQW 142

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score =  112 bits (281), Expect = 3e-33
 Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 15/136 (11%)

Query: 11  GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
           G SA    ++ I+ W   + G   T+YEG  +K  L FP DYP KPP++KF +  +HPN+
Sbjct: 19  GFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNI 78

Query: 70  DQYGNICLDILQD-------------KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 116
           D+ GN+C+ IL D             +W   +   TILLS+ S+L +PN ESP N  AA 
Sbjct: 79  DKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAK 138

Query: 117 LL-NNKEDYRKMVQKQ 131
           +   N  +++K V + 
Sbjct: 139 MQRENYAEFKKKVAQC 154

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score =  108 bits (271), Expect = 6e-32
 Identities = 65/129 (50%), Positives = 80/129 (62%), Gaps = 1/129 (0%)

Query: 4   MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 63
           +      GVS  P  ++I TW   I G + T +E  ++KLSL F  +YP KPP VKF + 
Sbjct: 15  LQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISK 74

Query: 64  CFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKE 122
            FHPNV   G+ICLDILQ++WS  YD   IL SIQSLL EPNP SP NS AA L   N+ 
Sbjct: 75  MFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRR 134

Query: 123 DYRKMVQKQ 131
           +Y K VQ+ 
Sbjct: 135 EYEKRVQQI 143

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score =  107 bits (269), Expect = 1e-31
 Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 1/129 (0%)

Query: 4   MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 63
           +        SA P G+ +F W  TI G   + Y+G  + L++ FP DYPFKPP+V F T 
Sbjct: 13  LGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 72

Query: 64  CFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKE 122
            +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E
Sbjct: 73  IYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 132

Query: 123 DYRKMVQKQ 131
            Y ++ ++ 
Sbjct: 133 RYNQLAREW 141

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score =  108 bits (270), Expect = 1e-31
 Identities = 49/121 (40%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET-MCFHPNV 69
           GVSA   G  I  W G I G  GT YEG  + L +  P DYP+ PP++KF T +      
Sbjct: 33  GVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNIS 92

Query: 70  DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 128
            Q G ICLDIL+ +WS A   RT LLSIQ++L +P P  P ++  A ++  N   + +  
Sbjct: 93  SQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTA 152

Query: 129 Q 129
           +
Sbjct: 153 K 153

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score =  107 bits (267), Expect = 2e-31
 Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 1/122 (0%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD
Sbjct: 21  GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 80

Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQ 129
           + G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL +  A     N+    +  +
Sbjct: 81  KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR 140

Query: 130 KQ 131
             
Sbjct: 141 AW 142

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score =  107 bits (267), Expect = 3e-31
 Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 2/119 (1%)

Query: 14  AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 73
           +F + + +  +   I       Y+   +  S +    YP  PP+VK ETM +HPN+D  G
Sbjct: 24  SFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEG 82

Query: 74  NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQ 131
           N+CL+IL++ W       +I+  +Q L  EPNPE PLN  AA +L NN+  + + VQ+ 
Sbjct: 83  NVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRS 141

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score =  105 bits (263), Expect = 1e-30
 Identities = 48/122 (39%), Positives = 74/122 (60%), Gaps = 1/122 (0%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G++A P  +++  +  TIEG + + YE   ++L L  P DYP + P+V+F T  +HPN+D
Sbjct: 22  GITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 81

Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQ 129
           + G ICLD+L+  WS A   RT+LLSIQ+LL  PNP  PL +  A     N++  +   +
Sbjct: 82  RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAR 141

Query: 130 KQ 131
           + 
Sbjct: 142 EW 143

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score =  100 bits (250), Expect = 1e-28
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 8/134 (5%)

Query: 1   MSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           M L  S        +P  +++  +    +G +GT YE  ++ L ++ P DYPFK P + F
Sbjct: 10  MRLCNST----RKVYPS-DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGF 64

Query: 61  ETMCFHPNVDQYGN-ICLDILQDKWSSAYDCRT-ILLSIQSLLGEPNPESPLNSYAAALL 118
                HPNVD+    +CLD++   W+  Y       + +  LL  PNP  PLN  AA LL
Sbjct: 65  CNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLL 124

Query: 119 -NNKEDYRKMVQKQ 131
             ++  +  ++++ 
Sbjct: 125 HADRVGFDALLREH 138

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-28
 Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G+  FP  E +     TIEG +GT Y G  +++ L    D+P  PP+  F T  FHPNV 
Sbjct: 25  GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG 84

Query: 71  QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQ 129
             G IC+++L+  W++    R +LL+I+ LL  PNPES LN  A  LL  N E+Y    +
Sbjct: 85  ANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 144

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 99.5 bits (247), Expect = 4e-28
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 15/143 (10%)

Query: 4   MMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 62
           ++     G+ A P+ E+ IF W   I+G   T Y    +   L FP DYP  PP++ F  
Sbjct: 15  LIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTP 74

Query: 63  MCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESP 109
              HPN+   G +C+ IL             +++WS       ILLS+ S+L EPN ES 
Sbjct: 75  SILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESG 134

Query: 110 LNSYAAALL-NNKEDYRKMVQKQ 131
            N  A  L  +N+ ++ + V+  
Sbjct: 135 ANIDACILWRDNRPEFERQVKLS 157

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 98.7 bits (245), Expect = 5e-28
 Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 4/131 (3%)

Query: 4   MMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 62
           +   G          E+ + TW G I       Y+  ++++ + FP +YPFKPP++ F+T
Sbjct: 11  IRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKT 69

Query: 63  MCFHPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NN 120
             +HPN+D+ G +CL ++  + W  A     ++ S+ +L+ +P PE PL +  A     +
Sbjct: 70  KIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKD 129

Query: 121 KEDYRKMVQKQ 131
           ++ + K  ++ 
Sbjct: 130 RKKFCKNAEEF 140

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 98.7 bits (245), Expect = 6e-28
 Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 4/129 (3%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
            +      E+     G I G   T YEG  Y+L ++ P  YPF PP+V+F T  +HPN+ 
Sbjct: 26  QIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS 85

Query: 71  QY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 128
              G ICLDIL+D+W++A   RT+LLS+Q+LL    P+ P ++  A     N E +++  
Sbjct: 86  SVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTA 145

Query: 129 QKQY--FAG 135
           +     +AG
Sbjct: 146 RLWAHVYAG 154

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 98.3 bits (244), Expect = 8e-28
 Identities = 45/123 (36%), Positives = 77/123 (62%), Gaps = 4/123 (3%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
           G++A P  E +  W   IEG + ++++GL ++L++ F  +Y + PP VKF T+ FHPNVD
Sbjct: 23  GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 82

Query: 71  QYGN-ICLDILQ--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRK 126
            +    C+D L   +KW++ Y   +ILL++Q +L  P  E+P+N  AA +L  ++  YR 
Sbjct: 83  PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRT 142

Query: 127 MVQ 129
           +++
Sbjct: 143 ILR 145

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 98.3 bits (244), Expect = 9e-28
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 3/129 (2%)

Query: 4   MMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 62
           +       ++     ES I    GT  G  GT YEG  + + +  P++YPFKPP+++F+T
Sbjct: 13  VKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDT 72

Query: 63  MCFHPNVDQYGNI-CLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NN 120
             +HPN+       CLDIL++ WS     ++ L+S+Q+LL  P P  P ++  A     +
Sbjct: 73  KVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRD 132

Query: 121 KEDYRKMVQ 129
           +E + K   
Sbjct: 133 RESFNKTAA 141

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 97.5 bits (242), Expect = 2e-27
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 4/124 (3%)

Query: 11  GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
            +      ++ +  W   +       Y   ++ L + FP +YPFKPP +KF T  +HPNV
Sbjct: 19  YLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV 77

Query: 70  DQYGNICLDILQDKW-SSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKM 127
           D+ G ICL I+  +          +L ++  L+  PN   PL    A LL  N E +RK 
Sbjct: 78  DENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKN 137

Query: 128 VQKQ 131
            ++ 
Sbjct: 138 AEEF 141

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 97.5 bits (242), Expect = 2e-27
 Identities = 50/129 (38%), Positives = 65/129 (50%), Gaps = 8/129 (6%)

Query: 11  GVSAFPEGES-----IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 65
           G  A P         +  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   F
Sbjct: 21  GFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF 80

Query: 66  HPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKE 122
           HPNV   G + L IL++   W  A   + ILL IQ LL EPN + P  + A  +   N+ 
Sbjct: 81  HPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRV 140

Query: 123 DYRKMVQKQ 131
           +Y K V+ Q
Sbjct: 141 EYEKRVRAQ 149

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.1 bits (236), Expect = 6e-27
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 12  VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET--MCFHPNV 69
           ++      SI  WI  +EG  GT+YEG  ++L  +F   YPF  PQV F    +  HP+V
Sbjct: 25  LNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV 84

Query: 70  DQYGNICLDILQDKWSSAYDCRTILLSIQSLL 101
              G+ICL IL + WS A   +++ LSI S+L
Sbjct: 85  YSNGHICLSILTEDWSPALSVQSVCLSIISML 116

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 93.2 bits (231), Expect = 4e-26
 Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 14/108 (12%)

Query: 11  GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 69
           G SA    ++ ++ W   I G   T+YEG  +K  L FP DYP +PP++KF T  +HPNV
Sbjct: 18  GFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV 77

Query: 70  DQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEP 104
           D+ G++C+ IL             +++W   +   TI++S+ S+L +P
Sbjct: 78  DKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP 125

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.1 bits (231), Expect = 6e-26
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLR--FPLDYPFKPPQVKFETMC---- 64
            + ++   +     +  + G     Y G +Y + +       YP+ PP    +       
Sbjct: 36  VLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTI 95

Query: 65  -FHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNP 106
               +VD  G I L  L +      D   ++  +  + G+  P
Sbjct: 96  KTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPP 138

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 90.8 bits (225), Expect = 4e-25
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 14  AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 73
              E  ++  W G I G   T+YE   Y L +     YP  PP V+F T      V+   
Sbjct: 31  EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN 90

Query: 74  NI----CLDILQDKWSSAYDCRTILLSIQSLLGEP-NPESPLN 111
            +     + +L  KW ++Y  + +L  ++ L+    N + P  
Sbjct: 91  GVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENMKLPQP 132

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 89.8 bits (222), Expect = 6e-25
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 4   MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 63
            ++   +  +      +I  WI    G + T+Y    YKL + FP DYP KPP V F   
Sbjct: 10  FLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK 69

Query: 64  CF-HPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL 101
              H +V   G+ICL +L D ++ +     ++LSI S+L
Sbjct: 70  PPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISML 108

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 87.0 bits (215), Expect = 2e-23
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 6   SGGDLGVSAFPEGE---SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 62
             G    S         ++  W GTI G   + +E   Y LS+    +YP  PP+V F +
Sbjct: 19  GFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFIS 78

Query: 63  MCFHPNVDQY-GNICLDILQDK-WSSAYDCRTILLSIQSLLGEPNPESPLN 111
               P V+   G +  D    + W  AY   T+LL ++  +  P  +    
Sbjct: 79  KINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQ 129

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 86.1 bits (212), Expect = 6e-23
 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 5/133 (3%)

Query: 4   MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 63
           + +    G++ + + + +      I GG  T YE   +KL +  P  YPF+PPQ++F T 
Sbjct: 14  LATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTP 73

Query: 64  CFHPNVDQYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL- 118
            +HPN+D  G ICLD+L    +  W  + +  T+L SIQ L+ EPNP+ PL +  ++   
Sbjct: 74  IYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFK 133

Query: 119 NNKEDYRKMVQKQ 131
            NK  + K  ++ 
Sbjct: 134 YNKPAFLKNARQW 146

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 9e-23
 Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 7/117 (5%)

Query: 11  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 70
            + A P   +I  W   + G + T YEG  Y   L FP ++PFKPP +   T       +
Sbjct: 20  YICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN 79

Query: 71  QYGNICLDIL---QDKWSSAYDCRTILLSIQSLLGEPNP--ESPLNSYAAALLNNKE 122
               +CL I     D W+ A+   TIL  + S + E  P   S   S         +
Sbjct: 80  --TRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQ 134

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.7 bits (204), Expect = 1e-21
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 14/93 (15%)

Query: 28  IEGGKGTMYEG---LSYKLSLRFPLDYPFKPPQVKFETMC-----------FHPNVDQYG 73
           I G   T  +G    S  + +  P  YP KPP +                     +D  G
Sbjct: 58  IYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNG 117

Query: 74  NICLDILQDKWSSAYDCRTILLSIQSLLGEPNP 106
            I L IL     +A +   ++  + SLL EP  
Sbjct: 118 WIALPILHCWDPAAMNLIMVVQELMSLLHEPPQ 150

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 8e-21
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 16/133 (12%)

Query: 13  SAFPEGESIFTWIGTIEGG------------KGTMYEGLSYKLSLRFPLDYPFKPPQVKF 60
           S     +S++ W   ++                         L+  F  ++PF PP V+ 
Sbjct: 28  SVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRV 87

Query: 61  ETMCF-HPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPE--SPLNSYAAA 116
                    V   G +C+++L +  WSSAY   ++++ I + L +         N     
Sbjct: 88  VLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYN 147

Query: 117 LLNNKEDYRKMVQ 129
           L   ++ Y  +VQ
Sbjct: 148 LARAQQSYNSIVQ 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.98
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.84
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.78
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	94.49
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	93.95
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	93.36
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	90.85
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	86.95

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=8.8e-49  Score=276.76  Aligned_cols=135  Identities=37%  Similarity=0.614  Sum_probs=132.5

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ +++.||++.|.++|+++|+++|.||.||||+||+|+++|.||++||++||+|+|.|+++||||+++|.||++++.
T Consensus        13 ~l~~-~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~   91 (149)
T d1j7db_          13 RLLA-EPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK   91 (149)
T ss_dssp             HHTT-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGT
T ss_pred             HHHh-CCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECCCCcEehHHhc
Confidence            5677 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      +.|+|++++.+||.+|+++|.+|+.++|+|.+||++|+++ ++|.++||+|+++|||
T Consensus        92 ~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~ar~~~~kyA~  148 (149)
T d1j7db_          92 DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM  148 (149)
T ss_dssp             TSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999 9999999999999997

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=3e-48  Score=275.13  Aligned_cols=137  Identities=31%  Similarity=0.567  Sum_probs=132.7

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|+++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||++++.
T Consensus        13 ~l~~-~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~~~g~icl~~l~   91 (154)
T d1yh2a1          13 MLAT-EPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLK   91 (154)
T ss_dssp             HHHH-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGS
T ss_pred             HHHH-CcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCcCCCCCccccccc
Confidence            4667 999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             ----CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032505           82 ----DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES  139 (139)
Q Consensus        82 ----~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~~  139 (139)
                          +.|+|++++.+||.+|+++|.+|++++|+|.+||.+|++| ++|.++||+|+++||+++
T Consensus        92 ~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~k~a~~~  154 (154)
T d1yh2a1          92 LPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQK  154 (154)
T ss_dssp             CTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhcCC
Confidence                5899999999999999999999999999999999999999 999999999999999974

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=4e-48  Score=273.02  Aligned_cols=135  Identities=38%  Similarity=0.639  Sum_probs=131.8

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ +++.||++.+.++|++.|+++|.||.+|||+||+|+++|.||++||++||+|+|.|+++||||+++|.||++++.
T Consensus        13 ~l~~-~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~~l~   91 (148)
T d1y6la_          13 EITL-DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILK   91 (148)
T ss_dssp             HHHH-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGT
T ss_pred             HHhh-CCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceECCCCeEEEEecC
Confidence            4667 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      +.|+|++++.+||.+|+++|.+|+.++|+|.+||++|++| ++|.++||+|+++||.
T Consensus        92 ~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~k~A~  148 (148)
T d1y6la_          92 DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  148 (148)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999 9999999999999983

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=1.6e-48  Score=276.35  Aligned_cols=136  Identities=35%  Similarity=0.585  Sum_probs=133.1

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|.++|+++|+++|.||.+|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.+|++++.
T Consensus        14 ~l~~-~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~G~icl~~~~   92 (152)
T d1jata_          14 KLVS-DPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK   92 (152)
T ss_dssp             HHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCCBCCGGGT
T ss_pred             HHHh-CCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCCCCCCeeecccc
Confidence            5677 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      +.|+|+++|.+||.+|++||.+|+.++|+|.+||++|.+| ++|.++||+++++||++
T Consensus        93 ~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~d~~~f~~~~r~~~~~~a~~  150 (152)
T d1jata_          93 TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK  150 (152)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred             ccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999 99999999999999985

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=4.6e-48  Score=272.23  Aligned_cols=135  Identities=39%  Similarity=0.710  Sum_probs=132.2

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ +++.||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+++|.||++++.
T Consensus        12 ~l~~-~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~iCl~~l~   90 (147)
T d1z2ua1          12 DLGR-DPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR   90 (147)
T ss_dssp             HHHH-SCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGT
T ss_pred             HHHh-CCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeECCCCCEeeehhc
Confidence            4667 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      +.|+|++++.+||.+|+++|.+|+.++|+|.+||++|++| ++|.++||+++++||+
T Consensus        91 ~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~k~A~  147 (147)
T d1z2ua1          91 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM  147 (147)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999 9999999999999996

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=1.1e-47  Score=270.25  Aligned_cols=133  Identities=59%  Similarity=1.052  Sum_probs=129.4

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+++||||+.+|.||++++.
T Consensus        12 ~l~~-~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~icl~~l~   90 (146)
T d1i7ka_          12 TLMM-SGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILK   90 (146)
T ss_dssp             HHHH-HCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTCBBCCGGGT
T ss_pred             HHhh-CCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCCCCCcccccccc
Confidence            4667 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE  136 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a  136 (139)
                      +.|+|++|+.+||.+|+++|.+|++++|+|.+||++|+ | ++|.++|+++++|||
T Consensus        91 ~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~~-n~~~f~k~~~~~~~K~~  145 (146)
T d1i7ka_          91 EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQV  145 (146)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHTT-SHHHHHHHHHHHHHTTC
T ss_pred             ccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHhh-CHHHHHHHHHHHHHccC
Confidence            99999999999999999999999999999999999996 6 999999999999998

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=2.5e-47  Score=269.28  Aligned_cols=133  Identities=49%  Similarity=0.764  Sum_probs=129.9

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ +++.||++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||++++.
T Consensus        14 ~l~~-~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~~~G~iCl~~l~   92 (149)
T d1z3da1          14 KLQE-DPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ   92 (149)
T ss_dssp             HHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCBBCCGGGT
T ss_pred             HHhh-CCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccceeEcCCCCEEecccc
Confidence            5677 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhh
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAG  135 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~  135 (139)
                      +.|+|++|+.+||.+|+++|.+|+.++|+|.+||++|++| ++|.++||+++++.
T Consensus        93 ~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~ks  147 (149)
T d1z3da1          93 NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS  147 (149)
T ss_dssp             TSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999 99999999999875

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=1.5e-47  Score=271.06  Aligned_cols=134  Identities=36%  Similarity=0.593  Sum_probs=130.6

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|+++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||++++.
T Consensus        17 ~l~~-~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~G~ic~~~l~   95 (151)
T d1zdna1          17 TLTA-DPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLK   95 (151)
T ss_dssp             HHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCHHHHT
T ss_pred             HHHh-CCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCCceecCCCCccccccc
Confidence            4667 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE  136 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a  136 (139)
                      ++|+|++++.+||.+|+++|.+|+.++|+|.+||++|++| ++|.++||+||++|.
T Consensus        96 ~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~ar~~~~~~g  151 (151)
T d1zdna1          96 RDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  151 (151)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ccCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999 999999999999984

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=2.6e-47  Score=271.03  Aligned_cols=136  Identities=36%  Similarity=0.572  Sum_probs=130.4

Q ss_pred             CcccccCCCCCeEEeeCCC-----CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcE
Q 032505            1 MSLMMSGGDLGVSAFPEGE-----SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI   75 (139)
Q Consensus         1 ~~l~~~~~~~gi~~~p~~~-----~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~i   75 (139)
                      ++|++ +++.|+++.|..+     |+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+++||||+.+|.+
T Consensus        12 ~~~~~-~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~i   90 (156)
T d2uyza1          12 KAWRK-DHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTV   90 (156)
T ss_dssp             HHHHH-SCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCTTSBB
T ss_pred             HHHHH-CCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccccccccccee
Confidence            35677 9999999999865     99999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCC--CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           76 CLDILQ--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        76 cl~~l~--~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      |++++.  ++|+|++||.+||.+|+++|.+|++++|+|.+||++|+++ ++|.++||+++++||+
T Consensus        91 cl~~l~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~k~A~  155 (156)
T d2uyza1          91 SLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP  155 (156)
T ss_dssp             CCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             eecccCcccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHCC
Confidence            999995  4799999999999999999999999999999999999999 9999999999999997

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=3.9e-47  Score=269.08  Aligned_cols=136  Identities=42%  Similarity=0.692  Sum_probs=132.3

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ +++.||++.|.++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||++++.
T Consensus        14 ~l~~-~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~~~G~icl~~l~   92 (153)
T d1ayza_          14 RMKE-DAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ   92 (153)
T ss_dssp             HHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGT
T ss_pred             HHhH-CCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccCCCCCCcccccccc
Confidence            5677 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      +.|+|++++.+||.+|+++|.+|+.++|+|.+||++|+++ ++|.++||+++++++++
T Consensus        93 ~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~~~~~~~f~~~~~~~~~ks~~~  150 (153)
T d1ayza_          93 NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWED  150 (153)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999 99999999999998754

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=2e-46  Score=266.41  Aligned_cols=136  Identities=56%  Similarity=1.111  Sum_probs=130.2

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~   81 (139)
                      +|++ ++++||++.|+++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+++||||+.+|.||++++.
T Consensus        20 ~l~~-~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~   98 (156)
T d2e2ca_          20 TLLM-SGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK   98 (156)
T ss_dssp             HHHH-HCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGT
T ss_pred             HHhH-CCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCCCCCCCCCccccccC
Confidence            5667 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhchHHHHHHHHHHHHhhccC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~~~f~~~~r~~~~~~a~~  138 (139)
                      +.|+|+++|.+||.+|+++|.+|++++|+|.+||++|+++.+|.++|++++++...+
T Consensus        99 ~~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~~n~~~y~k~~~e~~~~~~~~  155 (156)
T d2e2ca_          99 ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQTEYKKVLHEKYKTAQSD  155 (156)
T ss_dssp             TTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999986677999999999887655

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=2.2e-46  Score=267.44  Aligned_cols=136  Identities=38%  Similarity=0.602  Sum_probs=129.0

Q ss_pred             cccccCCCCCeEEeeCC-CCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~-~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      +|++ ++++||+|.+.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus        11 ~l~~-~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~G~vcl~~l   89 (161)
T d1pzva_          11 DMRR-VPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISIL   89 (161)
T ss_dssp             HHHH-SCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCTTSBBCCGGG
T ss_pred             HHHh-CCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCCCCccchhhc
Confidence            5677 999999999964 57999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-------------cCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           81 QD-------------KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        81 ~~-------------~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      ..             .|+|+++|.+||.+|+++|.+|++++|+|.+||++|+++ ++|.++|+++++++.+|
T Consensus        90 ~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~v~k~~e~  161 (161)
T d1pzva_          90 HDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQEE  161 (161)
T ss_dssp             CCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             CCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence            53             599999999999999999999999999999999999999 99999999999998765

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=1.9e-46  Score=264.62  Aligned_cols=134  Identities=31%  Similarity=0.566  Sum_probs=128.8

Q ss_pred             cccccCCCCCeEEee-CCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeec
Q 032505            2 SLMMSGGDLGVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDI   79 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p-~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~   79 (139)
                      +|++ ++++||++.+ .++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+++||||+. +|.+|+++
T Consensus        12 ~l~~-~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~~~~~~~~~   90 (149)
T d1fzya_          12 AVKD-DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDI   90 (149)
T ss_dssp             HHHT-CGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCCBCCGG
T ss_pred             HHHH-CCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCcccCCcceeechh
Confidence            4667 8999999986 4679999999999999999999999999999999999999999999999999998 78899999


Q ss_pred             CCCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505           80 LQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE  136 (139)
Q Consensus        80 l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a  136 (139)
                      +.+.|+|++||.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||++|++||
T Consensus        91 ~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~k~A  148 (149)
T d1fzya_          91 LKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA  148 (149)
T ss_dssp             GTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             hcccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999 999999999999998

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=6.5e-46  Score=265.00  Aligned_cols=131  Identities=38%  Similarity=0.647  Sum_probs=124.6

Q ss_pred             CCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCC
Q 032505            7 GGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWS   85 (139)
Q Consensus         7 ~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~   85 (139)
                      ++..|+++.+.++|+++|+++|.||.||||+||+|+|+|.||++||++||+|+|.|+++||||+. +|.||++++.+.|+
T Consensus        29 ~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPni~~~~G~icl~~l~~~W~  108 (161)
T d2f4za1          29 STSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWS  108 (161)
T ss_dssp             ----CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCC
T ss_pred             CCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEEecCCCCCCceECCCCCeecCcccccCC
Confidence            55679999999999999999999999999999999999999999999999999999999999966 89999999999999


Q ss_pred             CcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032505           86 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF  137 (139)
Q Consensus        86 p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~  137 (139)
                      |+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||++|++||+
T Consensus       109 p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~~~d~~~y~~~v~~~t~~~a~  161 (161)
T d2f4za1         109 PALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAK  161 (161)
T ss_dssp             TTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CcccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999 9999999999999995

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=5.8e-46  Score=265.87  Aligned_cols=134  Identities=33%  Similarity=0.622  Sum_probs=127.7

Q ss_pred             cccccCCCCCeEEeeC-CCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~-~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      +|++ ++++||++.|. ++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus        14 ~l~~-~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~vCl~il   92 (164)
T d2ucza_          14 QLIK-DSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISIL   92 (164)
T ss_dssp             HHHH-SCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTTSBBCCGGG
T ss_pred             HHhh-CCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceeceEcCCCCeeeccc
Confidence            5677 99999999995 569999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C-------------CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505           81 Q-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE  136 (139)
Q Consensus        81 ~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a  136 (139)
                      .             +.|+|+++|.+||.+|+++|.+|++++|+|.+||++|+++ ++|.++||+++.+++
T Consensus        93 ~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~~r~~~~k~~  162 (164)
T d2ucza_          93 HSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSL  162 (164)
T ss_dssp             SCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred             cCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence            4             4699999999999999999999999999999999999999 999999999999874

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-45  Score=260.88  Aligned_cols=129  Identities=34%  Similarity=0.621  Sum_probs=126.3

Q ss_pred             CCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCC
Q 032505            8 GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSS   86 (139)
Q Consensus         8 ~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p   86 (139)
                      ...+|++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++||||+. +|.+|++++.+.|+|
T Consensus        23 ~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~~g~ic~~~~~~~W~p  102 (154)
T d2bepa1          23 SKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA  102 (154)
T ss_dssp             HTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCT
T ss_pred             CCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCCCCCeeCCCCccccccccccCCC
Confidence            4679999999999999999999999999999999999999999999999999999999999997 899999999999999


Q ss_pred             cccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032505           87 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE  136 (139)
Q Consensus        87 ~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a  136 (139)
                      ++||.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+||++||
T Consensus       103 ~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~t~k~A  153 (154)
T d2bepa1         103 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA  153 (154)
T ss_dssp             TCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999 999999999999998

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=9.8e-46  Score=261.24  Aligned_cols=135  Identities=28%  Similarity=0.541  Sum_probs=128.1

Q ss_pred             cccccCCCCCeEEeeC-CCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~-~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      +|++ ++++||++.+. ++|+..|++.| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+++|.||++++
T Consensus        11 ~l~~-~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~G~icl~~l   88 (150)
T d1wzva1          11 DLQK-KPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII   88 (150)
T ss_dssp             HHHH-SCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBCCCGGG
T ss_pred             HHHH-CCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceECCCCCcccccc
Confidence            5677 99999999887 46899999866 899999999999999999999999999999999999999999999999999


Q ss_pred             C-CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           81 Q-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        81 ~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      . +.|+|++|+.+||.+|+++|.+|+.++|+|.+||++|++| ++|.++||+++++||..
T Consensus        89 ~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~a~~~~~kya~~  148 (150)
T d1wzva1          89 SSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD  148 (150)
T ss_dssp             CTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred             cccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence            5 6899999999999999999999999999999999999999 99999999999999975

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=3e-45  Score=257.19  Aligned_cols=133  Identities=26%  Similarity=0.583  Sum_probs=126.6

Q ss_pred             CcccccCCCCCeEEeeC-CCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeec
Q 032505            1 MSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI   79 (139)
Q Consensus         1 ~~l~~~~~~~gi~~~p~-~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~   79 (139)
                      ++|++ +++.|+++.+. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++
T Consensus         9 ~~l~~-~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~icl~~   86 (144)
T d1c4zd_           9 EEIRK-CGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV   86 (144)
T ss_dssp             TTCSS-SCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCBBCCTT
T ss_pred             HHHHh-CCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCccCCcccccc
Confidence            46777 89999997774 67999999998 99999999999999999999999999999999999999999999999999


Q ss_pred             CC-CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhh
Q 032505           80 LQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAG  135 (139)
Q Consensus        80 l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~  135 (139)
                      +. +.|+|++++.+||.+|+++|.+|+.++|+|.+||++|++| ++|.++||+++++|
T Consensus        87 l~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~ky  144 (144)
T d1c4zd_          87 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY  144 (144)
T ss_dssp             TSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC
T ss_pred             ccCCCCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            97 5799999999999999999999999999999999999999 99999999999987

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=2.1e-45  Score=259.10  Aligned_cols=129  Identities=36%  Similarity=0.705  Sum_probs=124.1

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l   80 (139)
                      +|++ ++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++||||+. +|.||++++
T Consensus        15 ~l~~-~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G~iC~~~l   93 (148)
T d1yrva1          15 DLKE-NNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFL   93 (148)
T ss_dssp             HHHH-HCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCBCCHHH
T ss_pred             HHHH-CCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccCceecCccccccccc
Confidence            5677 89999999999999999999999999999999999999999999999999999999999999995 899999998


Q ss_pred             C--CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHH
Q 032505           81 Q--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQ  131 (139)
Q Consensus        81 ~--~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~  131 (139)
                      .  ++|+|++|+++||.+|+++|.+|+.++|+|.+||++|++| ++|.++||++
T Consensus        94 ~~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1          94 DNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF  147 (148)
T ss_dssp             HCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CchhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHhh
Confidence            5  6899999999999999999999999999999999999999 9999999975

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=1.3e-42  Score=246.93  Aligned_cols=129  Identities=32%  Similarity=0.591  Sum_probs=120.8

Q ss_pred             CCCeEEe-eCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCCCcCCCc
Q 032505            9 DLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSA   87 (139)
Q Consensus         9 ~~gi~~~-p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~p~   87 (139)
                      ++++.+. ++++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.+++|||||+.+|.||++++.+.|+|+
T Consensus        18 ~~~~~i~~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnv~~~G~ic~~~~~~~W~p~   96 (157)
T d1y8xa1          18 PKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPV   96 (157)
T ss_dssp             CTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTT
T ss_pred             CCCCcEEEcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCccccccceeeeeecccCCCCC
Confidence            3455554 4568999999988 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           88 YDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        88 ~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      ++|++||.+|+++|.+|++++|+|.+||++|++| ++|.++||++++.++..
T Consensus        97 ~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~~~~~~~f~~~v~~~~~~~~~~  148 (157)
T d1y8xa1          97 LTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIG  148 (157)
T ss_dssp             CCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEEET
T ss_pred             CcHHHHHHHHHHHHcCCCCcChHHHHHHHHHHHCHHHHHHHHHHHHcCCCcC
Confidence            9999999999999999999999999999999999 99999999999887654

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=4e-43  Score=249.75  Aligned_cols=124  Identities=31%  Similarity=0.663  Sum_probs=117.5

Q ss_pred             EeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeeecCCCcCCCcccHHH
Q 032505           14 AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAYDCRT   92 (139)
Q Consensus        14 ~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~~~i~~   92 (139)
                      +.| +||+++|+++|.||+||||+||+|+++|.||++||.+||+|+|.|++|||||+. +|.||++++.++|+|++++.+
T Consensus        19 ~~~-~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~~G~vcl~il~~~W~p~~~i~~   97 (158)
T d1yf9a1          19 VYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLEN   97 (158)
T ss_dssp             EEE-CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTHH
T ss_pred             CCC-CCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccCcccccccccccccCchHhhhh
Confidence            566 479999999999999999999999999999999999999999999999999987 899999999999999999999


Q ss_pred             HHHH-HHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032505           93 ILLS-IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE  138 (139)
Q Consensus        93 iL~~-i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~~r~~~~~~a~~  138 (139)
                      +|.. |+.||.+|+.++|+|.+||++|++| ++|.++||+++++||..
T Consensus        98 il~~~i~~ll~~P~~~~p~N~eaa~l~~~n~~~f~~~~k~~~~k~a~~  145 (158)
T d1yf9a1          98 IFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP  145 (158)
T ss_dssp             HHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHhcCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHHCCh
Confidence            9865 6788899999999999999999999 99999999999999964

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=2.2e-38  Score=217.26  Aligned_cols=102  Identities=38%  Similarity=0.730  Sum_probs=96.4

Q ss_pred             cccccCCCCCeEEeeC-CCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~-~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l   80 (139)
                      +|++ ++++|+++.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++||||+.+|.||+++|
T Consensus        10 ~l~~-~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~iCl~iL   88 (125)
T d2awfa1          10 ELNK-NPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISIL   88 (125)
T ss_dssp             HHHH-SCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCGGG
T ss_pred             HHHh-CCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCCCCEEEeccc
Confidence            5677 99999999984 568999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C-------------CcCCCcccHHHHHHHHHHhhCCC
Q 032505           81 Q-------------DKWSSAYDCRTILLSIQSLLGEP  104 (139)
Q Consensus        81 ~-------------~~W~p~~~i~~iL~~i~~ll~~p  104 (139)
                      .             ++|+|++|+++||++|++||.+|
T Consensus        89 ~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          89 HEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             SCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             cCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence            4             57999999999999999999887

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=3.2e-38  Score=211.82  Aligned_cols=100  Identities=32%  Similarity=0.537  Sum_probs=96.2

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccc-cCCcccCCCcEeeecC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FHPNVDQYGNICLDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i-~Hpni~~~G~icl~~l   80 (139)
                      +|++ ++++|+++.++++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++ +||||+++|.||+++|
T Consensus         9 ~l~~-~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~~G~iCl~il   87 (109)
T d2fo3a1           9 NFLN-NPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLL   87 (109)
T ss_dssp             HHHH-SCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSBBCCGGG
T ss_pred             HHHh-CCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECCCCeEEeecc
Confidence            5677 8999999999999999999999999999999999999999999999999999999985 8999999999999999


Q ss_pred             CCcCCCcccHHHHHHHHHHhhC
Q 032505           81 QDKWSSAYDCRTILLSIQSLLG  102 (139)
Q Consensus        81 ~~~W~p~~~i~~iL~~i~~ll~  102 (139)
                      .++|+|++|+++||.+|++||.
T Consensus        88 ~~~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          88 GDDYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             TTTCCTTCCHHHHHHHHHHHHC
T ss_pred             cCCCCccCCHHHHHHHHHHHhC
Confidence            9999999999999999999984

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-38  Score=212.62  Aligned_cols=100  Identities=39%  Similarity=0.700  Sum_probs=94.0

Q ss_pred             cccccCCCCCeEEee--CCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccc--cCCcccCCCcEee
Q 032505            2 SLMMSGGDLGVSAFP--EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC--FHPNVDQYGNICL   77 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p--~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i--~Hpni~~~G~icl   77 (139)
                      +|++ ++++|+++.+  .++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++  |||||+.+|.||+
T Consensus        14 ~l~~-~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpnv~~~G~iCl   92 (117)
T d2a7la1          14 ALQN-DPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICL   92 (117)
T ss_dssp             HHHH-SCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCTTCBBCC
T ss_pred             HHhh-CCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccccCcCCCeEEe
Confidence            4667 8999999875  467999999999999999999999999999999999999999999976  8999999999999


Q ss_pred             ecCCCcCCCcccHHHHHHHHHHhhC
Q 032505           78 DILQDKWSSAYDCRTILLSIQSLLG  102 (139)
Q Consensus        78 ~~l~~~W~p~~~i~~iL~~i~~ll~  102 (139)
                      ++|.++|+|++|+++||.+|++||.
T Consensus        93 ~~l~~~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          93 SILTEDWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             GGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             ecCcCCCCCcCcHHHHHHHHHHHhC
Confidence            9999999999999999999999984

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=4.4e-37  Score=218.20  Aligned_cols=134  Identities=23%  Similarity=0.260  Sum_probs=111.2

Q ss_pred             cccccCCCCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEe-eecC
Q 032505            2 SLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC-LDIL   80 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~ic-l~~l   80 (139)
                      +|++ +|++|+++.|.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+++|+|++..|.+| +++.
T Consensus        12 ~l~~-~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~g~~~~~~l~~~   90 (157)
T d2f4wa1          12 RIKK-DPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFH   90 (157)
T ss_dssp             HHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTTSCBC-------
T ss_pred             HHHh-CCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCCCCeeeeecccc
Confidence            5677 9999999999999999999999999999999999999999999999999999999999998887654433 3555


Q ss_pred             CCcCCCcccHHHHHHHHHHhhCCCCCCC--cccHH-HHHHhhch-HHHHHHHHHHHHhhc
Q 032505           81 QDKWSSAYDCRTILLSIQSLLGEPNPES--PLNSY-AAALLNNK-EDYRKMVQKQYFAGE  136 (139)
Q Consensus        81 ~~~W~p~~~i~~iL~~i~~ll~~p~~~~--p~N~~-a~~~~~~~-~~f~~~~r~~~~~~a  136 (139)
                      .++|+|++||.+||.+|++||.+|+++.  +.+.+ +.+.|..+ .+|.++++.++++|.
T Consensus        91 ~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~~~~~~~~~~f~~k~~~~~~~~~  150 (157)
T d2f4wa1          91 PDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFP  150 (157)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCHHHHHHCH
T ss_pred             CCCCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999888754  34344 45577778 999999999998875

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=100.00  E-value=2.2e-36  Score=209.90  Aligned_cols=114  Identities=25%  Similarity=0.341  Sum_probs=97.0

Q ss_pred             ccccCCCCCeEEeeCCC---CceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEeee
Q 032505            3 LMMSGGDLGVSAFPEGE---SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLD   78 (139)
Q Consensus         3 l~~~~~~~gi~~~p~~~---~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~   78 (139)
                      +++..++.++++.+.++   |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++||||+. +|.||++
T Consensus        16 ~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~HpnV~~~~G~icl~   95 (136)
T d1jatb_          16 GEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD   95 (136)
T ss_dssp             HHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCTT
T ss_pred             HhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccccccccCCCeEECC
Confidence            45523466777766543   4999999999999999999999999999999999999999999999999996 6999999


Q ss_pred             cCC-CcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHH
Q 032505           79 ILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA  116 (139)
Q Consensus        79 ~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~  116 (139)
                      ++. ++|+|++||++||++|+++|.+|+.....+.++..
T Consensus        96 ~l~~~~Wsp~~ti~~IL~~i~~lL~~P~n~~~~q~~~g~  134 (136)
T d1jatb_          96 FHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGE  134 (136)
T ss_dssp             SHHHHTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTC
T ss_pred             CCcccCcCccCcHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence            875 68999999999999999999998877666655543

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=100.00  E-value=2.5e-35  Score=205.28  Aligned_cols=112  Identities=24%  Similarity=0.390  Sum_probs=98.8

Q ss_pred             cccccCCCCCeEEeeC----CCCceEEEEEEecCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccCCcccC-CCcEe
Q 032505            2 SLMMSGGDLGVSAFPE----GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNIC   76 (139)
Q Consensus         2 ~l~~~~~~~gi~~~p~----~~~~~~w~~~i~Gp~~t~yegg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~-~G~ic   76 (139)
                      +|++ ++++|+.+.+.    ++|+++|+++|.||.+|||+||.|+++|.||++||++||+|+|.|+++||||+. +|.+|
T Consensus        16 ~l~k-~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnV~~~~g~~~   94 (139)
T d2a4da1          16 EGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVD   94 (139)
T ss_dssp             HHHS-CCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBC
T ss_pred             HHhh-CCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCcccccCcCCCCEEc
Confidence            5677 88888777664    337999999999999999999999999999999999999999999999999998 57777


Q ss_pred             eecCC--CcCCCcccHHHHHHHHHHhhCCC-CCCCcccHHH
Q 032505           77 LDILQ--DKWSSAYDCRTILLSIQSLLGEP-NPESPLNSYA  114 (139)
Q Consensus        77 l~~l~--~~W~p~~~i~~iL~~i~~ll~~p-~~~~p~N~~a  114 (139)
                      .+.+.  ++|+|++||++||.+|+++|.+| |.++|.|.|.
T Consensus        95 ~~~l~~l~~Wsp~~ti~~iL~~i~slL~~peN~~~p~~~e~  135 (139)
T d2a4da1          95 PRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG  135 (139)
T ss_dssp             GGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTT
T ss_pred             ceecCcccCCCccCcHHHHHHHHHHHHCCCCCCCCCCCCCc
Confidence            66553  57999999999999999999976 7888988873

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.7e-34  Score=203.91  Aligned_cols=119  Identities=22%  Similarity=0.395  Sum_probs=105.0

Q ss_pred             eEEeeCCCCceEEEEEEec-CCCCCCCCcE-----------EEEEEEcCCCCCCCCCeeEEeccccCCc-ccCCCcEeee
Q 032505           12 VSAFPEGESIFTWIGTIEG-GKGTMYEGLS-----------YKLSLRFPLDYPFKPPQVKFETMCFHPN-VDQYGNICLD   78 (139)
Q Consensus        12 i~~~p~~~~~~~w~~~i~G-p~~t~yegg~-----------f~~~i~f~~~YP~~pP~v~f~t~i~Hpn-i~~~G~icl~   78 (139)
                      +.+.+.++|+++|++.|.| |++|||+||.           |+++|.||++||++||+|+|.|+++||| ++.+|.||++
T Consensus        27 ~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~PP~v~f~t~i~hpn~~~~~G~iCl~  106 (162)
T d1zuoa1          27 YSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCME  106 (162)
T ss_dssp             EEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESCEESTTBCGGGBBCCG
T ss_pred             EEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhhcceEEEEEEeeccccccCCceeecc
Confidence            5677889999999999999 8999999986           9999999999999999999999999998 5669999999


Q ss_pred             cCC-CcCCCcccHHHHHHHHHHhhCCCC--CCCcccHHHHHHhhchHHHHHHHHH
Q 032505           79 ILQ-DKWSSAYDCRTILLSIQSLLGEPN--PESPLNSYAAALLNNKEDYRKMVQK  130 (139)
Q Consensus        79 ~l~-~~W~p~~~i~~iL~~i~~ll~~p~--~~~p~N~~a~~~~~~~~~f~~~~r~  130 (139)
                      +|. ++|+|++||++||.+|+++|.+|+  .+.+.|.+++.+.++.++|.+.||.
T Consensus       107 iL~~~~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y~~~~~~~~y~~~~~~  161 (162)
T d1zuoa1         107 LLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQI  161 (162)
T ss_dssp             GGSTTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCCCHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHhHHHHHHHHhh
Confidence            995 569999999999999999998655  4677787777765544889999885

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.2e-22  Score=136.69  Aligned_cols=95  Identities=18%  Similarity=0.275  Sum_probs=84.5

Q ss_pred             CCCeEEeeCCCCceEEEEEEecCCCCCCCCcEEEE--EEEcCCCCCCCCCeeEEecc-----ccCCcccCCCcEeeecCC
Q 032505            9 DLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKL--SLRFPLDYPFKPPQVKFETM-----CFHPNVDQYGNICLDILQ   81 (139)
Q Consensus         9 ~~gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~f~~--~i~f~~~YP~~pP~v~f~t~-----i~Hpni~~~G~icl~~l~   81 (139)
                      .++..+...+|+..+|.+.|.|+.+++|+||+|.+  .|.||.+||.+||.|.|.+.     ++||||+.+|+||+++|.
T Consensus        34 ~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~h~~V~~~G~V~lp~L~  113 (141)
T d1s1qa_          34 KPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLH  113 (141)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECCSSSBCTTCBBCCHHHH
T ss_pred             CCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccCCCeECCCCCCcchhhc
Confidence            35677778889999999999999999999999998  66689999999999988753     789999999999999997


Q ss_pred             CcCCCcccHHHHHHHHHHhhCC
Q 032505           82 DKWSSAYDCRTILLSIQSLLGE  103 (139)
Q Consensus        82 ~~W~p~~~i~~iL~~i~~ll~~  103 (139)
                      +.|.+..++.++|..|+++|.+
T Consensus       114 ~W~~~~s~L~~ll~~L~~~f~~  135 (141)
T d1s1qa_         114 EWKHPQSDLLGLIQVMIVVFGD  135 (141)
T ss_dssp             TCCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCcccccHHHHHHHHHHHhCC
Confidence            6556778999999999999984

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2.3e-19  Score=125.57  Aligned_cols=97  Identities=25%  Similarity=0.315  Sum_probs=79.5

Q ss_pred             CeEEeeCCCCceEEEEEEecCCCCCCCCcE---EEEEEEcCCCCCCCCCeeEEecc-----------ccCCcccCCCcEe
Q 032505           11 GVSAFPEGESIFTWIGTIEGGKGTMYEGLS---YKLSLRFPLDYPFKPPQVKFETM-----------CFHPNVDQYGNIC   76 (139)
Q Consensus        11 gi~~~p~~~~~~~w~~~i~Gp~~t~yegg~---f~~~i~f~~~YP~~pP~v~f~t~-----------i~Hpni~~~G~ic   76 (139)
                      ...+...+|....+-+.+.|.-..+|+|+.   |.+.|.||++||++||.++|.++           ++||||+.+|+||
T Consensus        41 ~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~~~~~~~i~~hp~Vd~~G~V~  120 (152)
T d1uzxa_          41 RTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIA  120 (152)
T ss_dssp             EEEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCSCC----CGGGGGBCTTSCBC
T ss_pred             ccceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccccCCCcccccCCCCCCCCcEe
Confidence            444445566677888899999999999996   78899999999999999999865           5799999999999


Q ss_pred             eecCCCcCCCcccHHHHHHHHHHhhCCCCCC
Q 032505           77 LDILQDKWSSAYDCRTILLSIQSLLGEPNPE  107 (139)
Q Consensus        77 l~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~  107 (139)
                      +++|.+.|.++.++.++|..|+++|.++..|
T Consensus       121 lp~L~~W~~~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_         121 LPILHCWDPAAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             CHHHHSCCTTTCCHHHHHHHHHTGGGSCCCC
T ss_pred             hHHhcCCCCccCcHHHHHHHHHHHhcCCCCC
Confidence            9999877789999999999999999976443

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.12  Score=33.12  Aligned_cols=66  Identities=17%  Similarity=0.216  Sum_probs=44.5

Q ss_pred             cEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCCCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHHh
Q 032505           39 LSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL  118 (139)
Q Consensus        39 g~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~~  118 (139)
                      -.+.+.+.+|++||..+|.+...+                    .|-+......++..|......-....+.=-+...+.
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~--------------------~~l~~~~~~~l~~~l~~~~~e~~~Ge~mif~lv~~l  127 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRS--------------------SELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWL  127 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEEC--------------------SSSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHH
T ss_pred             ceEEEEEEeCCCCCCCCCCceeec--------------------cccCHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            367888999999999999986542                    133444566777777777765444556555666666


Q ss_pred             hch-HHH
Q 032505          119 NNK-EDY  124 (139)
Q Consensus       119 ~~~-~~f  124 (139)
                      +++ ..|
T Consensus       128 qe~~~~~  134 (141)
T d2dawa1         128 QDNSASY  134 (141)
T ss_dssp             HHTTHHH
T ss_pred             HHHHHHH
Confidence            655 444

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.2  Score=30.98  Aligned_cols=25  Identities=28%  Similarity=0.700  Sum_probs=21.3

Q ss_pred             cEEEEEEEcCCCCCCCCCeeEEecc
Q 032505           39 LSYKLSLRFPLDYPFKPPQVKFETM   63 (139)
Q Consensus        39 g~f~~~i~f~~~YP~~pP~v~f~t~   63 (139)
                      ....+.+.+|++||..+|.+.+...
T Consensus        52 ~~v~L~~~~p~~YP~~~P~i~~~~~   76 (115)
T d2daya1          52 VCFTLVLQVPAEYPHEVPQISIRNP   76 (115)
T ss_dssp             CEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             eEEEEEEEcCCCCCCCCCcEEeecc
Confidence            4688889999999999999987653

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.13  Score=32.79  Aligned_cols=64  Identities=13%  Similarity=0.178  Sum_probs=38.4

Q ss_pred             CcEEEEEEEcCCCCCCCCCeeEEeccccCCcccCCCcEeeecCCCcCCCcccHHHHHHHHHHhhCCCCCCCcccHHHHHH
Q 032505           38 GLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL  117 (139)
Q Consensus        38 gg~f~~~i~f~~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~~a~~~  117 (139)
                      .....+.+.+|.+||..+|.|...+.                    |-.......++..+...+.+-....+.=-+.+..
T Consensus        65 ~~~l~L~~~lP~~YP~~~P~i~l~~~--------------------~l~~~~~~~l~~~l~~~~~~~~~Ge~~if~lve~  124 (140)
T d2daxa1          65 MAMFSLACILPFKYPAVLPEITVRSV--------------------LLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEW  124 (140)
T ss_dssp             EEEEEEEEEECSSTTSSCCCCEEECT--------------------TSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHH
T ss_pred             CceEEEEEEecCcCCCcCCceeccCC--------------------CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            45688999999999999999875431                    2222334455556655554323344544455544


Q ss_pred             hhch
Q 032505          118 LNNK  121 (139)
Q Consensus       118 ~~~~  121 (139)
                      .+++
T Consensus       125 lqe~  128 (140)
T d2daxa1         125 VREH  128 (140)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.052  Score=35.71  Aligned_cols=54  Identities=17%  Similarity=0.468  Sum_probs=33.7

Q ss_pred             EEEEEEcCCCCCCCCCeeEEecccc-CCcccCCCcEeeecCC-CcC---CCcccHHHHH
Q 032505           41 YKLSLRFPLDYPFKPPQVKFETMCF-HPNVDQYGNICLDILQ-DKW---SSAYDCRTIL   94 (139)
Q Consensus        41 f~~~i~f~~~YP~~pP~v~f~t~i~-Hpni~~~G~icl~~l~-~~W---~p~~~i~~iL   94 (139)
                      |.+++.+|..||..||.+..-.--. -.-.+..|+||++.-. .-|   .|.++|...|
T Consensus        78 Fd~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWarN~PkfGIaHal  136 (162)
T d2in1a1          78 FDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM  136 (162)
T ss_dssp             EEEEEECCTTTTTSCCCCBCGGGSSSCSSSCGGGBCCCCTTSHHHHHTTTTSCCHHHHH
T ss_pred             EEEEeccCCCCCCCCcceeccccCCchhhhhcCceeeccccchhhhhhcCCchhHHHHH
Confidence            4456667999999999997542100 1122347899997653 335   4666766543

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.95  E-value=0.39  Score=30.46  Aligned_cols=27  Identities=19%  Similarity=0.400  Sum_probs=22.5

Q ss_pred             CCcEEEEEEEcCCCCCCCCCeeEEecc
Q 032505           37 EGLSYKLSLRFPLDYPFKPPQVKFETM   63 (139)
Q Consensus        37 egg~f~~~i~f~~~YP~~pP~v~f~t~   63 (139)
                      ....+.+.+.||.+||..+|.+.+...
T Consensus        61 ~~~~i~L~~~lp~~YP~~~P~i~~~~~   87 (137)
T d1ukxa_          61 VYVQVELRVKCPPTYPDVVPEIDLKNA   87 (137)
T ss_dssp             CSCEEEEEECCCTTTTSSCCCCEEEEE
T ss_pred             ceEEEEEEEECCCCCCcccceEEEecC
Confidence            345788999999999999999987653