Citrus Sinensis ID: 032541

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARYSISKAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccEEccccccccEEEEEEccHHHHHcccHcHHHcccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mdqstnigetegLKTGLELVKSVSdkhldllrpsarysiskapdtadrekgrytlirdpenfqfgiydkplpcfgcgvgwfSFLLGFVFPLMWYYgtflyfgnhcrkdprERAGLAASAIAAMACSVVMLVIVVFRLM
Flexible Loop (DISEMBL)
mdqstnigeteglktgLELVKSVSDkhldllrpsarysiskapdtadrekgrYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Low Complexity Region (SEG)
MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARYSISKAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERaglaasaiaamaCSVVMLVIVVFRLM
Disordered region (IsUnstruct)
***************************************************RYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFR**
Disordered Region (DISOPRED)
****************LELVKSVSDKHLDLL**************************DPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Disordered Region (DISEMBL)
*********TEGLKTGLELVKSVSDKHLDLLRPSARYSISKAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Disordered Region (DISPRO)
****TNIGETEGLKTGLELVKSVSDKHLDLLRPSARYSISKAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARYSISKAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q8L9S1	158	60S ribosomal protein L18	no	no	0.463	0.405	0.408	1e-05

>sp|Q8L9S1|R18A1_ARATH 60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA PE=2 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 68  DKPLPCFGCGVGWFSFLLGFVF-PLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACS 126
           +  LPC G G+GWF F++GF+F  + WY G F+        D RE+AG  A +IA    S
Sbjct: 87  EHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVT--SVDHREKAGYVACSIA----S 140

Query: 127 VVMLVIVVFRL 137
           VV L+ V+  +
Sbjct: 141 VVYLIAVMLGM 151

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
255546063	142	conserved hypothetical protein [Ricinus	0.978	0.950	0.753	1e-48
356565888	144	PREDICTED: uncharacterized protein LOC10	1.0	0.958	0.661	5e-48
224091200	141	predicted protein [Populus trichocarpa]	0.971	0.950	0.746	2e-47
224142908	146	predicted protein [Populus trichocarpa]	0.971	0.917	0.678	4e-45
356558389	138	PREDICTED: uncharacterized protein LOC10	0.898	0.898	0.700	7e-45
388497666	134	unknown [Lotus japonicus]	0.920	0.947	0.684	9e-45
356530415	138	PREDICTED: uncharacterized protein LOC10	0.898	0.898	0.692	2e-44
351722991	144	uncharacterized protein LOC100306083 [Gl	1.0	0.958	0.640	2e-44
388496450	134	unknown [Lotus japonicus]	0.920	0.947	0.676	7e-44
388506132	147	unknown [Medicago truncatula]	1.0	0.938	0.589	3e-41

>gi|255546063|ref|XP_002514091.1| conserved hypothetical protein [Ricinus communis] gi|223546547|gb|EEF48045.1| conserved hypothetical protein [Ricinus communis]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 119/138 (86%), Gaps = 3/138 (2%)

Query: 1   MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARY---SISKAPDTADREKGRYTLIR 57
           MDQ+  I E E L+TGLELVKS SDKH+DLLRPSARY   S  +APD ADREKG+YTL+R
Sbjct: 1   MDQNIAIEEKECLRTGLELVKSASDKHIDLLRPSARYYSASKGQAPDGADREKGKYTLLR 60

Query: 58  DPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAA 117
           D E+FQ GIYDKPLPCFGCGVGWFSFLLGF FPLMWYY TFLYFGN+ RKDPRERAGLAA
Sbjct: 61  DSEDFQIGIYDKPLPCFGCGVGWFSFLLGFAFPLMWYYATFLYFGNYYRKDPRERAGLAA 120

Query: 118 SAIAAMACSVVMLVIVVF 135
           +AIAAMA SV++++I+ +
Sbjct: 121 AAIAAMAFSVLLMIIIAY 138

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565888|ref|XP_003551168.1| PREDICTED: uncharacterized protein LOC100795083 [Glycine max]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 92/139 (66%), Positives = 109/139 (78%), Gaps = 1/139 (0%)

Query: 1   MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSAR-YSISKAPDTADREKGRYTLIRDP 59
           MD+   + ET  L+T +ELV+SVSDKH DLLRPSAR YS  ++ DT  R KG+Y LIRDP
Sbjct: 1   MDKDARVEETVDLRTNVELVRSVSDKHHDLLRPSARNYSRGQSTDTTGRGKGKYALIRDP 60

Query: 60  ENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASA 119
           E+FQ G+YDKPLPCFGCG+GWFSFL GF+ P MW+Y T LYFGNH RKDPRERAGL ASA
Sbjct: 61  EDFQMGVYDKPLPCFGCGIGWFSFLFGFLCPPMWFYATILYFGNHYRKDPRERAGLGASA 120

Query: 120 IAAMACSVVMLVIVVFRLM 138
           IAA+ CSV  L+I V  ++
Sbjct: 121 IAALVCSVTSLIIGVILVL 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091200|ref|XP_002309204.1| predicted protein [Populus trichocarpa] gi|222855180|gb|EEE92727.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/138 (74%), Positives = 117/138 (84%), Gaps = 4/138 (2%)

Query: 1   MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARY---SISKAPDTADREKGRYTLIR 57
           MD +  I E +G + G+ELVKSVSDKH+DLLRPSARY   S  +A D AD EKG+YTLIR
Sbjct: 1   MDPNAAIEERKGFRNGVELVKSVSDKHIDLLRPSARYYTASKGQATDAADGEKGKYTLIR 60

Query: 58  DPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAA 117
           DPE+FQ GIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGN+ R+DPRERAGLAA
Sbjct: 61  DPEDFQ-GIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNYHRRDPRERAGLAA 119

Query: 118 SAIAAMACSVVMLVIVVF 135
           +AIAAM  SVV++VI  +
Sbjct: 120 AAIAAMVFSVVLMVIAAY 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142908|ref|XP_002324774.1| predicted protein [Populus trichocarpa] gi|222866208|gb|EEF03339.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 115/143 (80%), Gaps = 9/143 (6%)

Query: 1   MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARYS--------ISKAPDTADREKGR 52
           MD + +I E +G + G+E VKSVSDKH+DLLRPSARY         + +  D  D EKG+
Sbjct: 1   MDPNASIDERDGFRNGVEKVKSVSDKHIDLLRPSARYYATSKELLMVGQVTDATDGEKGK 60

Query: 53  YTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRER 112
           YTL+ DPE+FQ GIYDKPLPCFGCG+GWFSFLLGFVFPLMWYYGTFLYFGN+ RKDPRER
Sbjct: 61  YTLVGDPEDFQ-GIYDKPLPCFGCGIGWFSFLLGFVFPLMWYYGTFLYFGNYYRKDPRER 119

Query: 113 AGLAASAIAAMACSVVMLVIVVF 135
           AGLAA+AI AM+ SVV+LVI+ +
Sbjct: 120 AGLAAAAIGAMSFSVVLLVIIAY 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558389|ref|XP_003547489.1| PREDICTED: uncharacterized protein LOC100814053 [Glycine max]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 89/127 (70%), Positives = 103/127 (81%), Gaps = 3/127 (2%)

Query: 9   ETEGLKTGLELVKSVSDKHLDLLRPSAR-YSI--SKAPDTADREKGRYTLIRDPENFQFG 65
           ET  L+ G+EL  SVSDKHLDLLRPSAR YSI   +A D AD EKG YTLIR PE+FQ G
Sbjct: 3   ETVDLRNGVELAASVSDKHLDLLRPSARNYSIFRGQAMDVADHEKGNYTLIRGPEDFQTG 62

Query: 66  IYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMAC 125
           +YDKPLPC+GCG+GWFSFL GF+ P +WYY T LYFGN+ RKDPRERAGL ASAIAA+ C
Sbjct: 63  LYDKPLPCYGCGIGWFSFLFGFLCPPLWYYATILYFGNYYRKDPRERAGLGASAIAALIC 122

Query: 126 SVVMLVI 132
           SV +L++
Sbjct: 123 SVALLIV 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497666|gb|AFK36899.1| unknown [Lotus japonicus]

 Score =  184 bits (467), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 89/130 (68%), Positives = 104/130 (80%), Gaps = 3/130 (2%)

Query: 9   ETEGLKTGLELVKSVSDKHLDLLRPSAR-YSISKAPDTADREKGRYTLIRDPENFQFGIY 67
           ET  L+ G+EL + VSDKHLDLLRPSAR YS+ +  D  D +KG+Y LIRDPE+FQ G+Y
Sbjct: 3   ETADLRNGVELTRPVSDKHLDLLRPSARNYSVFR--DATDNDKGKYALIRDPEDFQAGLY 60

Query: 68  DKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSV 127
           DKPLPCFGCGVGWFSFL GF+ PL+WYY T LYFGN+ RKDPRERAGL ASAIAA+ CSV
Sbjct: 61  DKPLPCFGCGVGWFSFLCGFLCPLLWYYATILYFGNYYRKDPRERAGLGASAIAALLCSV 120

Query: 128 VMLVIVVFRL 137
            +L+  V  L
Sbjct: 121 ALLITGVILL 130

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530415|ref|XP_003533777.1| PREDICTED: uncharacterized protein LOC100791750 [Glycine max]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/127 (69%), Positives = 103/127 (81%), Gaps = 3/127 (2%)

Query: 9   ETEGLKTGLELVKSVSDKHLDLLRPSAR-YSI--SKAPDTADREKGRYTLIRDPENFQFG 65
           ET  L+ G+EL  SVSDKHLDLLRPSAR YSI   +A D AD EKG YTLI+ PE+FQ G
Sbjct: 3   ETVDLRNGVELATSVSDKHLDLLRPSARNYSIFRGQAMDVADHEKGNYTLIKGPEDFQTG 62

Query: 66  IYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMAC 125
           +YDKPLPC+GCG+GWFSFL GF+ P +WYY T LYFGN+ RKDPRERAGL ASAIAA+ C
Sbjct: 63  LYDKPLPCYGCGIGWFSFLFGFLCPPLWYYATILYFGNYYRKDPRERAGLGASAIAALIC 122

Query: 126 SVVMLVI 132
           SV +L++
Sbjct: 123 SVALLIV 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722991|ref|NP_001237263.1| uncharacterized protein LOC100306083 [Glycine max] gi|255627483|gb|ACU14086.1| unknown [Glycine max]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/139 (64%), Positives = 105/139 (75%), Gaps = 1/139 (0%)

Query: 1   MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSAR-YSISKAPDTADREKGRYTLIRDP 59
           MD+   + ET  L+T +ELV+SVSDKH DLLRPSAR  S  ++ D A   KG+Y LIRDP
Sbjct: 1   MDKDARVEETVDLRTNVELVRSVSDKHHDLLRPSARNLSRGQSTDAAGHGKGKYALIRDP 60

Query: 60  ENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASA 119
           E FQ G+YDKPLP FGCG+GWFSFL GF+ P MW+Y T LYFGNH RKDPRERAGL ASA
Sbjct: 61  EVFQTGVYDKPLPFFGCGIGWFSFLFGFLCPPMWFYATILYFGNHYRKDPRERAGLGASA 120

Query: 120 IAAMACSVVMLVIVVFRLM 138
           IAA+ CSV  L+I V  ++
Sbjct: 121 IAALVCSVASLMIGVILVL 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496450|gb|AFK36291.1| unknown [Lotus japonicus]

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 88/130 (67%), Positives = 103/130 (79%), Gaps = 3/130 (2%)

Query: 9   ETEGLKTGLELVKSVSDKHLDLLRPSAR-YSISKAPDTADREKGRYTLIRDPENFQFGIY 67
           ET  L+ G+EL + VSDKHLDLLRPSAR YS+ +  D  D +KG+Y LIRDPE+FQ G+Y
Sbjct: 3   ETADLRNGVELTRPVSDKHLDLLRPSARNYSVFR--DATDNDKGKYALIRDPEDFQAGLY 60

Query: 68  DKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSV 127
           DKPLPCFGCGVGWFSFL GF+ P +WYY T LYFGN+ RKDPRERAGL ASAIAA+ CSV
Sbjct: 61  DKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGNYYRKDPRERAGLGASAIAALLCSV 120

Query: 128 VMLVIVVFRL 137
            +L+  V  L
Sbjct: 121 ALLITGVILL 130

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506132|gb|AFK41132.1| unknown [Medicago truncatula]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/139 (58%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 1   MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSAR-YSISKAPDTADREKGRYTLIRDP 59
           MD+   + E   L+ G+E  +S+S K+ DLLRP AR  S  +A D     KG+Y L+RDP
Sbjct: 1   MDKDGRVEENVDLRKGVESARSISVKNFDLLRPFARSNSRGQAGDPMAHGKGKYALVRDP 60

Query: 60  ENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASA 119
           E+FQ G+YDKPLPCFGCG+GWFSFL GF+ P MW+Y T LYFGNH RKDPRERAGL ASA
Sbjct: 61  EDFQSGLYDKPLPCFGCGIGWFSFLFGFICPPMWFYATILYFGNHYRKDPRERAGLGASA 120

Query: 120 IAAMACSVVMLVIVVFRLM 138
           IAA+ CSV ML+     L+
Sbjct: 121 IAALVCSVGMLIFAAILLL 139

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
TAIR|locus:2120840	133	AT4G26060 [Arabidopsis thalian	0.927	0.962	0.564	1.9e-35
TAIR|locus:2164620	137	AT5G57060 [Arabidopsis thalian	0.956	0.963	0.492	6.7e-33
TAIR|locus:1006230715	103	AT1G54217 [Arabidopsis thalian	0.659	0.883	0.478	1.3e-20
TAIR|locus:2024847	153	AT1G53560 [Arabidopsis thalian	0.442	0.398	0.371	1.6e-06
TAIR|locus:505006347	132	AT3G14595 [Arabidopsis thalian	0.268	0.280	0.5	5.5e-06
TAIR|locus:2020317	154	AT1G17080 [Arabidopsis thalian	0.326	0.292	0.428	1.9e-05
TAIR|locus:2198269	312	RPL18AA "60S ribosomal protein	0.210	0.092	0.533	9.9e-05

TAIR|locus:2120840 AT4G26060 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 74/131 (56%), Positives = 89/131 (67%)

Query:     7 IGET--EGLKTGLELVKSVSDKHLDLLRPSARYSISKAPDTADREKGRYTLIRDPENFQF 64
             +GET  E      ELVKSV+DKH  L+RP A+Y  S   D     KGRYTL++D +  + 
Sbjct:     1 MGETVKERGDGSAELVKSVADKHAGLVRPVAKY-YSAVKDAMVCGKGRYTLVKDVDEVEN 59

Query:    65 GIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERXXXXXXXXXXXX 124
             G+YDKPLPCFGCG+GWFSFLLGFVFP +WYY T LYFGN+ RKDPRER            
Sbjct:    60 GVYDKPLPCFGCGIGWFSFLLGFVFPFLWYYATLLYFGNYYRKDPRERAGLAASAITAMG 119

Query:   125 CSVVMLVIVVF 135
              S+++LVIVVF
Sbjct:   120 FSLLLLVIVVF 130

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:2164620 AT5G57060 [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 67/136 (49%), Positives = 90/136 (66%)

Query:     1 MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARYSISKAPDTADREKGRYTLIRDPE 60
             MD+++      G +T  ELVK ++D+H  L++ ++R+  S   D   R K RYTL++D +
Sbjct:     1 MDENSKFVSGNG-RT--ELVKFIADRHAKLMKQASRH-YSAIKDAMARGKKRYTLVKDVD 56

Query:    61 NFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERXXXXXXXX 120
             + + G YDKPLPCFGCG+GWFSFLLGF+FP +WYY  FLYFGN+ RKDPRER        
Sbjct:    57 DMETGAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFGNYYRKDPRERAGLAASAI 116

Query:   121 XXXXCSVVMLVIVVFR 136
                  S+V+LVI  FR
Sbjct:   117 TAMGFSLVLLVIFAFR 132

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019835 "cytolysis" evidence=IEA

GO:0050829 "defense response to Gram-negative bacterium" evidence=IEA

TAIR|locus:1006230715 AT1G54217 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 44/92 (47%), Positives = 59/92 (64%)

Query:    44 DTADREKGRYTLIRDP-ENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFG 102
             D  +++KG+Y LIRD  E+ + G + KPLPCFG G+GWFSFLLGFVFP  WY  TFLY  
Sbjct:     5 DLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 64

Query:   103 NHCRKDPRERXXXXXXXXXXXXCSVVMLVIVV 134
             ++  +DPRER             SV +++ V+
Sbjct:    65 SYYHRDPRERSGLAASAIAALIFSVALVITVL 96

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2024847 AT1G53560 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 26/70 (37%), Positives = 37/70 (52%)

Query:    71 LPCFGCGVGWFSFLLGFVF-PLMWYYGTFLYFGNHC-RKDPRERXXXXXXXXXXXXCSVV 128
             LPC G G+GWF F++GF+   + WY G F+     C R DPRE+             +VV
Sbjct:    84 LPCCGLGLGWFLFIIGFLLGAIPWYVGVFILV---CARIDPREKPGYVACTIA----AVV 136

Query:   129 MLVIVVFRLM 138
               + +VF +M
Sbjct:   137 ATITIVFGVM 146

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:505006347 AT3G14595 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query:    73 CFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRER 112
             C G G+GW  F+LGF F L WY G FL   +   ++PRER
Sbjct:    67 CCGIGIGWVLFILGFFFALPWYIGFFLLLFS---RNPRER 103

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:2020317 AT1G17080 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query:    66 IYDKPLPCFGCGVGWFSFLLGFVF-PLMWYYGTFLY-FGNHCRKDPRER 112
             +  + LPC G G+GWF F++GF    + WY G F+  FG   R D RE+
Sbjct:    80 VRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMMFGR--RIDYREK 126

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2198269 RPL18AA "60S ribosomal protein L18A-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 9.9e-05, P = 9.9e-05
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query:    71 LPCFGCGVGWFSFLLGFVFP-LMWYYGTFL 99
             LPC G G+GWF F++GF+F  + WY G F+
Sbjct:    90 LPCCGLGMGWFLFIMGFLFGGIPWYLGAFI 119


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.145   0.469    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      138       126   0.00091  102 3  11 22  0.47    30
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.34u 0.12s 13.46t   Elapsed:  00:00:01
  Total cpu time:  13.34u 0.12s 13.46t   Elapsed:  00:00:01
  Start:  Mon May 20 18:37:54 2013   End:  Mon May 20 18:37:55 2013

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0006914 "autophagy" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0112001901 hypothetical protein (142 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
PF10251	94	PEN-2: Presenilin enhancer-2 subunit of gamma secr	94.17
PF07787	248	DUF1625: Protein of unknown function (DUF1625); In	89.81
KOG3402	101	consensus Predicted membrane protein [Function unk	80.65

>PF10251 PEN-2: Presenilin enhancer-2 subunit of gamma secretase; InterPro: IPR019379 This entry is a short, 101 peptide protein, which is the smallest subunit of the gamma-secretase aspartyl protease complex

Probab=94.17  E-value=0.16  Score=37.50  Aligned_cols=49  Identities=31%  Similarity=0.604  Sum_probs=37.5

Q ss_pred             HHHHHHHH-hHHHHHHHHHhhcccccCC------cccchhHHHHHHHHHHHHHHHHH
Q 032541           82 SFLLGFVF-PLMWYYGTFLYFGNHCRKD------PRERAGLAASAIAAMACSVVMLV  131 (138)
Q Consensus        82 lFllGFf~-~ipWYvgafl~~~~~~r~D------pRErpGl~AcaIAa~v~tia~~I  131 (138)
                      .|+.||++ |..|.+-++-++- ....+      ++-|.=.+.|+|.+++.+++++.
T Consensus        13 yf~~GFa~LP~lW~vN~~wF~~-~af~~p~~~~~~~Ir~YVi~SaiG~~vw~v~l~~   68 (94)
T PF10251_consen   13 YFLGGFAFLPFLWLVNVVWFFR-EAFSKPPYDEQPQIRKYVIRSAIGFLVWTVVLIS   68 (94)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhH-HHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899988 7999999877652 33333      36677788999999999988765

It catalyses the intra-membrane cleavage of a subset of type I transmembrane proteins. The other active constituents of the complex are presenilin (PS) nicastrin and anterior pharynx defective-1 (APH-1) protein. Presenilin enhancer-2 (PEN-2) adopts a hairpin orientation in the membrane with its N- and C-terminal domains facing the luminal/extracellular space. The C-terminal domain maintains PS stability within the complex [].

>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species

Probab=89.81  E-value=1.3  Score=35.48  Aligned_cols=55  Identities=13%  Similarity=0.337  Sum_probs=34.5

Q ss_pred             chHHHHHHHHHHHh--HHHHHHHHHhhcccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 032541           77 GVGWFSFLLGFVFP--LMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM  138 (138)
Q Consensus        77 GiGWflFllGFf~~--ipWYvgafl~~~~~~r~DpRErpGl~AcaIAa~v~tia~~Il~~~r~~  138 (138)
                      .+||++..+||.+-  +.+.+..++++  ..     .-.+..-+.+|.++...+.+++.|+.|+
T Consensus       188 ~~G~llmf~G~~~~~~~l~~l~~~~P~--lg-----~l~~~~~~~~~~~~s~~lsl~~Ia~aW~  244 (248)
T PF07787_consen  188 FIGWLLMFIGFFLLFSPLYTLVDWIPL--LG-----NLVGFGLFLVAFIISFSLSLLTIALAWL  244 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhce--ee-----chhhhHHHHHHHHHHHHHHHHHHHHhhe
Confidence            56999999998884  44444455554  11     2445556666666666666667777664

The region in question is approximately 250 residues long.

>KOG3402 consensus Predicted membrane protein [Function unknown]

Probab=80.65  E-value=2.8  Score=31.85  Aligned_cols=48  Identities=31%  Similarity=0.697  Sum_probs=32.0

Q ss_pred             HHHHHHHH-hHHHHHHHHHhhcc--cccCCc--cc-chhHHHHHHHHHHHHHHH
Q 032541           82 SFLLGFVF-PLMWYYGTFLYFGN--HCRKDP--RE-RAGLAASAIAAMACSVVM  129 (138)
Q Consensus        82 lFllGFf~-~ipWYvgafl~~~~--~~r~Dp--RE-rpGl~AcaIAa~v~tia~  129 (138)
                      -+++||-| |..|.+-.|-++--  +.+..|  |. |.=.++|+|+.++.+|++
T Consensus        18 yyl~GfafLP~lW~VN~FwFf~~af~~pa~~~r~QIr~YVvrSavGf~fw~ivL   71 (101)
T KOG3402|consen   18 YYLFGFAFLPWLWFVNCFWFFPVAFHSPAFPHRRQIRNYVVRSAVGFSFWTIVL   71 (101)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            37889977 89999999987631  333344  12 233468888888777765

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00