Citrus Sinensis ID: 032587

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MDTSSILPLPQLSFLSLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFYLGWYLTG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHEccc
Coil and Loop (DISEMBL)
mdtssilplpqlsfLSLRLnrnkaswpcnlqrsprstgtihcqkmyvpgfgeaspeakgakhlHNFFTYIAVRIITAQLQSYNPEAYKELMEFLerhplndgdkFCADLMRESSRHKGLALRILEVSKFYLGWYLTG
Flexible Loop (DISEMBL)
mdtssilplpqLSFLSLRLNRNKAswpcnlqrsprstgtiHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSrhkglalrilevskfylgwyltg
Low Complexity Region (SEG)
MDTSSILPLPQLSFLSLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFYLGWYLTG
Disordered region (IsUnstruct)
***********LSFLSLRLNRNKASWPCNLQ*****TGTIHCQKMYVPGFGEA***AKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFYLGWYL**
Disordered Region (DISOPRED)
*************FL********************************PGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFYLGWYLTG
Disordered Region (DISEMBL)
MDTSSILPLPQLSFLSLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFYLGWYLTG
Disordered Region (DISPRO)
*****ILPLPQLSFLSLRLNRNKASWPCNL********TIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFYLGWYLTG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDTSSILPLPQLSFLSLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFYLGWYLTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
359483327	172	PREDICTED: uncharacterized protein LOC10	0.941	0.75	0.709	1e-44
302144090	186	unnamed protein product [Vitis vinifera]	0.941	0.693	0.709	1e-44
255554783	173	conserved hypothetical protein [Ricinus	0.941	0.745	0.696	4e-44
224113745	172	predicted protein [Populus trichocarpa]	0.795	0.633	0.741	5e-41
363806848	172	uncharacterized protein LOC100803175 [Gl	0.941	0.75	0.593	6e-39
356532205	172	PREDICTED: uncharacterized protein LOC10	0.941	0.75	0.601	1e-38
449531049	133	PREDICTED: uncharacterized LOC101222925	0.664	0.684	0.802	9e-38
449433988	173	PREDICTED: uncharacterized protein LOC10	0.664	0.526	0.802	1e-37
18412539	174	Chaperonin-like RbcX protein [Arabidopsi	0.773	0.609	0.666	5e-33
297813821	175	predicted protein [Arabidopsis lyrata su	0.795	0.622	0.619	1e-32

>gi|359483327|ref|XP_002264370.2| PREDICTED: uncharacterized protein LOC100252097 [Vitis vinifera]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/131 (70%), Positives = 105/131 (80%), Gaps = 2/131 (1%)

Query: 1   MDTSSILPLPQLSFLSLRLNRNKASWPCNLQRSPRSTGT-IHCQKMYVPGFGEASPEAKG 59
           M+ S+I P  QLSF S R +R +A +P    +   S  T IHCQKMYV GFGEASPEAK 
Sbjct: 5   MEASAISPSAQLSFFSYRPDRTRA-YPSRPWKQRISQPTRIHCQKMYVAGFGEASPEAKA 63

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           AK++HNFFTYIAVRI+TAQLQSYNPEAY+ELMEFL RH L+DGDKFC+DLMRESSRHKGL
Sbjct: 64  AKNIHNFFTYIAVRIVTAQLQSYNPEAYEELMEFLSRHSLSDGDKFCSDLMRESSRHKGL 123

Query: 120 ALRILEVSKFY 130
           ALRILEV   Y
Sbjct: 124 ALRILEVRSAY 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144090|emb|CBI23195.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/131 (70%), Positives = 105/131 (80%), Gaps = 2/131 (1%)

Query: 1   MDTSSILPLPQLSFLSLRLNRNKASWPCNLQRSPRSTGT-IHCQKMYVPGFGEASPEAKG 59
           M+ S+I P  QLSF S R +R +A +P    +   S  T IHCQKMYV GFGEASPEAK 
Sbjct: 19  MEASAISPSAQLSFFSYRPDRTRA-YPSRPWKQRISQPTRIHCQKMYVAGFGEASPEAKA 77

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           AK++HNFFTYIAVRI+TAQLQSYNPEAY+ELMEFL RH L+DGDKFC+DLMRESSRHKGL
Sbjct: 78  AKNIHNFFTYIAVRIVTAQLQSYNPEAYEELMEFLSRHSLSDGDKFCSDLMRESSRHKGL 137

Query: 120 ALRILEVSKFY 130
           ALRILEV   Y
Sbjct: 138 ALRILEVRSAY 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554783|ref|XP_002518429.1| conserved hypothetical protein [Ricinus communis] gi|223542274|gb|EEF43816.1| conserved hypothetical protein [Ricinus communis]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 92/132 (69%), Positives = 105/132 (79%), Gaps = 3/132 (2%)

Query: 1   MDTSSILPLPQLSFLSLRLNRNKA--SWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAK 58
           M + ++L   QLS  S + N NKA  SWPC   R+ +ST  + CQKMYVPGFGEASPEAK
Sbjct: 1   MGSYAVLSPCQLSVCSPKSNWNKAYPSWPCKKLRTAQST-RLRCQKMYVPGFGEASPEAK 59

Query: 59  GAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKG 118
            AK+LHNFFTY+AVRI+TAQLQSYNPEAY+ELM FL RH LNDGD+FCA+LMRESSRHK 
Sbjct: 60  AAKNLHNFFTYVAVRIVTAQLQSYNPEAYEELMGFLSRHSLNDGDEFCANLMRESSRHKS 119

Query: 119 LALRILEVSKFY 130
           LALRILEV   Y
Sbjct: 120 LALRILEVRSAY 131

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113745|ref|XP_002316559.1| predicted protein [Populus trichocarpa] gi|222859624|gb|EEE97171.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 83/112 (74%), Positives = 95/112 (84%), Gaps = 3/112 (2%)

Query: 21  RNKA--SWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQ 78
           RNKA  SW C   R+ + T  ++CQKMYVPGFGEASPE K AK+LH+FFTYIAVRI+TAQ
Sbjct: 21  RNKAYPSWSCKKPRTTQPT-RLYCQKMYVPGFGEASPEKKAAKNLHDFFTYIAVRIVTAQ 79

Query: 79  LQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFY 130
           L+SY+PEAY+ELMEFL RH LNDGDKFCA+LMRESSRHKGLA+RILEV   Y
Sbjct: 80  LESYSPEAYEELMEFLSRHSLNDGDKFCAELMRESSRHKGLAMRILEVRSAY 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806848|ref|NP_001242292.1| uncharacterized protein LOC100803175 [Glycine max] gi|255640618|gb|ACU20594.1| unknown [Glycine max]

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/133 (59%), Positives = 99/133 (74%), Gaps = 4/133 (3%)

Query: 1   MDTSSILPLPQLSFL---SLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEA 57
           M++ + LPL QL ++   +L  N+    WPC  +RS      +HC KM+VPGFGEASPEA
Sbjct: 1   MESCATLPLSQLPYVYPSTLSSNKAYPFWPCK-RRSSSQPTRLHCSKMFVPGFGEASPEA 59

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
           K A++LHNFFT++AV+I+ AQL+SYN EAY+E MEFL RH LNDGDKFCA + RESSRHK
Sbjct: 60  KAAQNLHNFFTFVAVKIVAAQLESYNHEAYEEPMEFLSRHSLNDGDKFCASMFRESSRHK 119

Query: 118 GLALRILEVSKFY 130
            LALRI+EV   Y
Sbjct: 120 NLALRIMEVRSAY 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532205|ref|XP_003534664.1| PREDICTED: uncharacterized protein LOC100820127 [Glycine max]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/133 (60%), Positives = 99/133 (74%), Gaps = 4/133 (3%)

Query: 1   MDTSSILPLPQLSFL---SLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEA 57
           M+  + LPL QL ++   +L  N+    W C  + S R T  +HC KM+VPGFGEASPEA
Sbjct: 1   MEFCATLPLSQLPYVYPSTLSSNKAYPFWSCKRRISSRPTR-LHCSKMFVPGFGEASPEA 59

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
           K A++LHNFFT++AV+I+ AQL+SYN EAY+ELMEFL RH LNDGDKFCA + RESSRHK
Sbjct: 60  KAAENLHNFFTFVAVKIVAAQLESYNHEAYEELMEFLSRHSLNDGDKFCATMFRESSRHK 119

Query: 118 GLALRILEVSKFY 130
            LALRI+EV   Y
Sbjct: 120 NLALRIMEVRSAY 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531049|ref|XP_004172500.1| PREDICTED: uncharacterized LOC101222925 [Cucumis sativus]

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 73/91 (80%), Positives = 81/91 (89%)

Query: 40  IHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPL 99
           +HC KMYVPGFGEASPE+K A++LHNFFTY+AVRI+TAQL+SYNPEAY ELMEFL+RH L
Sbjct: 3   LHCSKMYVPGFGEASPESKAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSL 62

Query: 100 NDGDKFCADLMRESSRHKGLALRILEVSKFY 130
           NDGDKF A LMRESSRHK LALRILEV   Y
Sbjct: 63  NDGDKFLASLMRESSRHKALALRILEVRSAY 93

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433988|ref|XP_004134778.1| PREDICTED: uncharacterized protein LOC101222925 [Cucumis sativus]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/91 (80%), Positives = 81/91 (89%)

Query: 40  IHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPL 99
           +HC KMYVPGFGEASPE+K A++LHNFFTY+AVRI+TAQL+SYNPEAY ELMEFL+RH L
Sbjct: 43  LHCSKMYVPGFGEASPESKAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSL 102

Query: 100 NDGDKFCADLMRESSRHKGLALRILEVSKFY 130
           NDGDKF A LMRESSRHK LALRILEV   Y
Sbjct: 103 NDGDKFLASLMRESSRHKALALRILEVRSAY 133

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412539|ref|NP_567263.1| Chaperonin-like RbcX protein [Arabidopsis thaliana] gi|15027851|gb|AAK76456.1| unknown protein [Arabidopsis thaliana] gi|23296672|gb|AAN13142.1| unknown protein [Arabidopsis thaliana] gi|332656979|gb|AEE82379.1| Chaperonin-like RbcX protein [Arabidopsis thaliana]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/108 (66%), Positives = 84/108 (77%), Gaps = 2/108 (1%)

Query: 24  ASWPCNLQRSPRSTGTIHC-QKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSY 82
            S+P  +Q S +   T  C  KMYVPGFGEASPEAK AKHLH+FFTY+AVRI++AQL+SY
Sbjct: 26  VSYPL-MQSSRKCKQTRICSNKMYVPGFGEASPEAKAAKHLHDFFTYVAVRIVSAQLESY 84

Query: 83  NPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFY 130
           NPEAY EL EFL+ + ++DGDKFCA LMR SSRH  LALRILEV   Y
Sbjct: 85  NPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHMNLALRILEVRSAY 132

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813821|ref|XP_002874794.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320631|gb|EFH51053.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 86/121 (71%), Gaps = 12/121 (9%)

Query: 10  PQLSFLSLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTY 69
           P LSF  +R +R      C   R       I   KMYVPGFGEASPEAK AKHLH+FFTY
Sbjct: 25  PLLSFALMRNSR-----KCKKTR-------ICSNKMYVPGFGEASPEAKAAKHLHDFFTY 72

Query: 70  IAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKF 129
           +AVRI++AQL+SYNPEAY EL EFL+ + ++DGDKFCA LMR SSRH  LALRILEV   
Sbjct: 73  VAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHMNLALRILEVRSA 132

Query: 130 Y 130
           Y
Sbjct: 133 Y 133

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
TAIR|locus:2134877	174	RbcX1 "AT4G04330" [Arabidopsis	0.927	0.729	0.6	1.7e-34

TAIR|locus:2134877 RbcX1 "AT4G04330" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 78/130 (60%), Positives = 96/130 (73%)

Query:     3 TSSILPLPQLSFLSLRLNRNK-ASWPCNLQRSPRSTGTIHCQ-KMYVPGFGEASPEAKGA 60
             +SS+L    LS+L+ +  +    S+P  +Q S +   T  C  KMYVPGFGEASPEAK A
Sbjct:     4 SSSLLHHSYLSYLNPKFGKRPLVSYPL-MQSSRKCKQTRICSNKMYVPGFGEASPEAKAA 62

Query:    61 KHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLA 120
             KHLH+FFTY+AVRI++AQL+SYNPEAY EL EFL+ + ++DGDKFCA LMR SSRH  LA
Sbjct:    63 KHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHMNLA 122

Query:   121 LRILEVSKFY 130
             LRILEV   Y
Sbjct:   123 LRILEVRSAY 132


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      137       137   0.00091  102 3  11 22  0.40    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  145 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.45u 0.07s 13.52t   Elapsed:  00:00:01
  Total cpu time:  13.45u 0.07s 13.52t   Elapsed:  00:00:01
  Start:  Thu May  9 17:09:24 2013   End:  Thu May  9 17:09:25 2013

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0044183 "protein binding involved in protein folding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006889001 SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (186 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	137
pfam02341	111	pfam02341, RcbX, RbcX protein	3e-11

>gnl|CDD|202210 pfam02341, RcbX, RbcX protein

 Score = 56.2 bits (136), Expect = 3e-11
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           AK L ++ TY AVR +  QL   NP     L +F     + DG+ +  +L++E+     L
Sbjct: 11  AKVLQSYLTYQAVRTVLDQLSETNPPLAIWLHQFSASGKIQDGEAYLEELLQEN---PEL 67

Query: 120 ALRILEV 126
           ALRI+ V
Sbjct: 68  ALRIMTV 74

The RBCX protein has been identified as having a possible chaperone-like function. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RuBisCO in Anabaena sp. CA. RbcX has been shown to possess a chaperone-like function assisting correct folding of RuBisCO in E. coli expression studies and is needed for RuBisCO to reach its maximal activity. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
PF02341	111	RcbX: RbcX protein; InterPro: IPR003435 The RbcX p	100.0

>PF02341 RcbX: RbcX protein; InterPro: IPR003435 The RbcX protein has been identified as having a possible chaperonin-like function []

Probab=100.00  E-value=3e-37  Score=229.95  Aligned_cols=77  Identities=48%  Similarity=0.688  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCcHHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhh
Q 032587           56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFYLGWYL  135 (137)
Q Consensus        56 E~daAk~L~~yfTy~AvRvVl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LAlRIMeVRe~ya~~~l  135 (137)
                      .+|||++|++||||+|||||++||+||||+.|.||++|+++||++|||+||++||+|+   ++||+|||+||+|||+++.
T Consensus         7 ~kdtak~L~~yfTy~Avr~Vl~QL~etnp~~~~wL~~F~~~~~~~DGd~fl~~L~~e~---~~LA~RIM~vR~~la~~~~   83 (111)
T PF02341_consen    7 AKDTAKVLQSYFTYQAVRTVLAQLYETNPPAYIWLYNFLSRNPLQDGDAFLEALMREN---QELALRIMEVREHLAEEVF   83 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHSTCSSHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999999999999999999999999999999999999998   9999999999999999864

The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RubisCO in Anabaena sp. (strain CA / ATCC 33047). RbcX has been shown to possess a chaperonin-like function assisting correct folding of RubisCO in Escherichia coli expression studies and is needed for RubisCO to reach its maximal activity [].; PDB: 2PEM_B 2PEI_L 2PEK_A 2Z46_E 2Z44_A 2PEJ_F 2PEN_D 2PEQ_B 2Z45_A 3Q20_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
4gr2_A	128	Structure Of Atrbcx1 From Arabidopsis Thaliana. Len		5e-34
2pem_A	134	Crystal Structure Of Rbcx In Complex With Substrate		2e-06
2pek_A	134	Crystal Structure Of Rbcx Point Mutant Q29a Length		1e-05
2z44_A	134	Crystal Structure Of Selenomethionine-Labeled Orf13		2e-05
2pei_A	109	Crystal Structure Of Selenomethionine-Labeled Rbcx		3e-05
2pej_A	134	Crystal Structure Of Rbcx Point Mutant Y17aY20L Len		4e-05
2py8_A	147	Rbcx Length = 147		7e-04

>pdb|4GR2|A Chain A, Structure Of Atrbcx1 From Arabidopsis Thaliana. Length = 128

Iteration: 1
 Score =  139 bits (350), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 73/86 (84%)
Query: 45  MYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDK 104
           MYVPGFGEASPEAK AKHLH+FFTY+AVRI++AQL+SYNPEAY EL EFL+ + ++DGDK
Sbjct: 1   MYVPGFGEASPEAKAAKHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDK 60
Query: 105 FCADLMRESSRHKGLALRILEVSKFY 130
           F A LMR SSRH  LALRILEV   Y
Sbjct: 61  FLATLMRRSSRHMNLALRILEVRSAY 86

>pdb|2PEM|A Chain A, Crystal Structure Of Rbcx In Complex With Substrate Length = 134

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +   +M E   +K L
Sbjct: 11  AITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NKEL 67
Query: 120 ALRILEV 126
            LRIL V
Sbjct: 68  VLRILTV 74

>pdb|2PEK|A Chain A, Crystal Structure Of Rbcx Point Mutant Q29a Length = 134

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
           + A  L ++ TY AVR+I+  L   NP     L EF +RHP+ + D +   +M E   +K
Sbjct: 9   ETAITLQSYLTYQAVRLISQALSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NK 65
Query: 118 GLALRILEV 126
            L LRIL V
Sbjct: 66  ELVLRILTV 74

>pdb|2Z44|A Chain A, Crystal Structure Of Selenomethionine-Labeled Orf134 Length = 134

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +      E   +K L
Sbjct: 11  AITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAXXLE---NKEL 67
Query: 120 ALRILEV 126
            LRIL V
Sbjct: 68  VLRILTV 74

>pdb|2PEI|A Chain A, Crystal Structure Of Selenomethionine-Labeled Rbcx Length = 109

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +      E   +K L
Sbjct: 11  AITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAXXLE---NKEL 67
Query: 120 ALRILEV 126
            LRIL V
Sbjct: 68  VLRILTV 74

>pdb|2PEJ|A Chain A, Crystal Structure Of Rbcx Point Mutant Y17aY20L Length = 134

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L +  T  AVR+I+ QL   NP     L EF +RHP+ + D +   +M E   +K L
Sbjct: 11  AITLQSALTLQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NKEL 67
Query: 120 ALRILEV 126
            LRIL V
Sbjct: 68  VLRILTV 74

>pdb|2PY8|A Chain A, Rbcx Length = 147

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
            K L ++ TY AV  I ++L   NP     L ++L  H + +G+ F  +L+ E   +K L
Sbjct: 11  VKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDE---NKEL 67
Query: 120 ALRILEV 126
            LRIL V
Sbjct: 68  VLRILAV 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
2py8_A	147	Hypothetical protein RBCX; all helical fold, chape	4e-25
2peq_A	134	ORF134; helix bundle, protein complex assembly, ch	6e-25
3ka1_A	126	RBCX protein; chaperone, helix bundle, rubisco ass	7e-25
3hyb_A	155	RBCX protein; rubisco, protein complex assembly, c	7e-24

>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1 Length = 147

 Score = 92.1 bits (228), Expect = 4e-25
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
              K L ++ TY AV  I ++L   NP     L ++L  H + +G+ F  +L+ E+    
Sbjct: 9   ATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKE-- 66

Query: 118 GLALRILEVSKFYLGW 133
            L LRIL V +     
Sbjct: 67  -LVLRILAVREDIAES 81

>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A Length = 134

 Score = 91.3 bits (226), Expect = 6e-25
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
           + A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +   +M E+   K
Sbjct: 9   ETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLEN---K 65

Query: 118 GLALRILEVSKFYLGWY 134
            L LRIL V +      
Sbjct: 66  ELVLRILTVRENLAEGV 82

>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C Length = 155

 Score = 89.4 bits (221), Expect = 7e-24
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 9/103 (8%)

Query: 31  QRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKEL 90
                S        M +    +       AK L ++ TY A+R + AQL   NP     L
Sbjct: 7   HHHHSSGLVPRGSHMNLKQIAK-----DTAKTLQSYLTYQALRTVLAQLGETNPPLALWL 61

Query: 91  MEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFYLGW 133
             F       DG+K+  +L  E      LALRI+ V +     
Sbjct: 62  HNFSAGKV-QDGEKYIEELFLEKPD---LALRIMTVREHIAEE 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
2peq_A	134	ORF134; helix bundle, protein complex assembly, ch	100.0
3ka1_A	126	RBCX protein; chaperone, helix bundle, rubisco ass	100.0
2py8_A	147	Hypothetical protein RBCX; all helical fold, chape	100.0
3hyb_A	155	RBCX protein; rubisco, protein complex assembly, c	100.0

>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A

Probab=100.00  E-value=2e-36  Score=230.68  Aligned_cols=77  Identities=38%  Similarity=0.514  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCcHHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhh
Q 032587           56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFYLGWYL  135 (137)
Q Consensus        56 E~daAk~L~~yfTy~AvRvVl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LAlRIMeVRe~ya~~~l  135 (137)
                      ++|||++|++||||+|||||++||+||||+.|.||++|+++||++|||+||++||+|+   ++||+|||+||+|||+++.
T Consensus         7 ~~daAk~L~~yfTy~AvR~Vl~QL~e~np~~~~wL~~F~~~~~l~DGd~fL~~L~~e~---~~LAlRIM~VRe~ya~e~~   83 (134)
T 2peq_A            7 AKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLEN---KELVLRILTVRENLAEGVL   83 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCTTSHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcCCCccHHHHHHHHHhHC---HHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999999999999999   9999999999999999863

>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1

Probab=100.00  E-value=8.8e-36  Score=230.02  Aligned_cols=77  Identities=32%  Similarity=0.461  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCcHHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhh
Q 032587           56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFYLGWYL  135 (137)
Q Consensus        56 E~daAk~L~~yfTy~AvRvVl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LAlRIMeVRe~ya~~~l  135 (137)
                      .+|||++|++||||+|||||++||+|+||+.|.||++|+++|||+|||+||++||+|+   ++||+|||+||+|||+|+.
T Consensus         7 ~kdaAk~L~~yfTy~AvR~VL~QL~EtNP~~y~wL~~Fl~~npl~DGd~fL~~Lmre~---~~LAlRIMeVR~~ya~e~f   83 (147)
T 2py8_A            7 AQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDEN---KELVLRILAVREDIAESVL   83 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSSHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCCccHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999999999999999999999999999999999999998   8999999999999999975

>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C

Probab=100.00  E-value=6.2e-35  Score=226.76  Aligned_cols=86  Identities=31%  Similarity=0.408  Sum_probs=78.9

Q ss_pred             eecCCCCCChh---HHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCcHHHHHHHHHhcccCCchhHHH
Q 032587           46 YVPGFGEASPE---AKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALR  122 (137)
Q Consensus        46 ~Vp~fGG~sPE---~daAk~L~~yfTy~AvRvVl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LAlR  122 (137)
                      .||.-.-+..-   +|||++|++||||+|||||++||+||||+.|.||++|++ +|++|||+||++||+|+   ++||+|
T Consensus        14 ~~~~~~~m~~k~iakDtak~L~~YfTYqAvr~VLaQL~EtNP~~y~wL~~F~s-~~iqDGe~fl~~L~~E~---~~LA~R   89 (155)
T 3hyb_A           14 LVPRGSHMNLKQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEK---PDLALR   89 (155)
T ss_dssp             SSCSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TCCSSHHHHHHHHHHHC---HHHHHH
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHc-CCcccHHHHHHHHHhhC---HHHHHH
Confidence            45544444544   999999999999999999999999999999999999999 99999999999999998   899999


Q ss_pred             HHHHHHHHHhhhh
Q 032587          123 ILEVSKFYLGWYL  135 (137)
Q Consensus       123 IMeVRe~ya~~~l  135 (137)
                      ||+||+|||+|+.
T Consensus        90 IM~VRehlae~v~  102 (155)
T 3hyb_A           90 IMTVREHIAEEIA  102 (155)
T ss_dssp             HHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	137
d2peqa1	108	a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synech	1e-28
d2py8a1	120	a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synech	5e-28
d2peoa1	115	a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabae	4e-25

>d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002 [TaxId: 32049]} Length = 108

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechococcus sp. pcc 7002 [TaxId: 32049]

 Score = 99.0 bits (247), Expect = 1e-28
 Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
           + A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +   +M E   +K
Sbjct: 8   ETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NK 64

Query: 118 GLALRILEVSKFYLGWYL 135
            L LRIL V +      L
Sbjct: 65  ELVLRILTVRENLAEGVL 82

>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]} Length = 120

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechocystis sp., strain PCC 6803 [TaxId: 1143]

 Score = 97.9 bits (244), Expect = 5e-28
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
              K L ++ TY AV  I ++L   NP     L ++L  H + +G+ F  +L+ E+    
Sbjct: 8   ATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKE-- 65

Query: 118 GLALRILEVSKFYLGWYL 135
            L LRIL V +      L
Sbjct: 66  -LVLRILAVREDIAESVL 82

>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]} Length = 115

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Anabaena sp. [TaxId: 1167]

 Score = 90.2 bits (224), Expect = 4e-25
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
             AK L ++ TY A+R + AQL   NP     L  F     + DG+K+  +L  E     
Sbjct: 9   DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEKPD-- 65

Query: 118 GLALRILEVSKFYLGW 133
            LALRI+ V +     
Sbjct: 66  -LALRIMTVREHIAEE 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d2peqa1	108	RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002	100.0
d2py8a1	120	RuBisCo chaperone RbcX {Synechocystis sp., strain	100.0
d2peoa1	115	RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]	100.0

>d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002 [TaxId: 32049]}

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechococcus sp. pcc 7002 [TaxId: 32049]

Probab=100.00  E-value=1.4e-37  Score=228.08  Aligned_cols=77  Identities=38%  Similarity=0.514  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCcHHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhh
Q 032587           56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFYLGWYL  135 (137)
Q Consensus        56 E~daAk~L~~yfTy~AvRvVl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LAlRIMeVRe~ya~~~l  135 (137)
                      .+|||++|++||||+|||||++||+|||||.|.||++|+++||++|||+||++||+|+   |+||+|||+||+|||+|+.
T Consensus         6 ~kd~ak~L~~yfTy~AvrvVl~Ql~e~np~~~~wL~~F~~~~~~~DGd~~l~~L~~e~---~~lA~RIm~vR~~ya~e~~   82 (108)
T d2peqa1           6 AKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLEN---KELVLRILTVRENLAEGVL   82 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCTTSHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcHhHHHHHHHHhcCCCCCHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999999999999999999999999999999999999998   8999999999999999954

>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]}

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechocystis sp., strain PCC 6803 [TaxId: 1143]

Probab=100.00  E-value=5.4e-37  Score=228.53  Aligned_cols=77  Identities=32%  Similarity=0.461  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCcHHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhh
Q 032587           56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFYLGWYL  135 (137)
Q Consensus        56 E~daAk~L~~yfTy~AvRvVl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LAlRIMeVRe~ya~~~l  135 (137)
                      .+||||+|++||||+|||||++||+||||+.|.||++|+++||++|||+||++||+|+   ++||+|||+||+|||++++
T Consensus         6 ~k~tak~L~~yfTy~Avr~Vl~QL~etnp~~~~wL~~f~~~~~~~DGd~fl~~L~~e~---~~lAlRIm~vRe~lAeev~   82 (120)
T d2py8a1           6 AQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDEN---KELVLRILAVREDIAESVL   82 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSSHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCCCCHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999999999999999999999999999999999999998   8999999999999999875

>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]}

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Anabaena sp. [TaxId: 1167]

Probab=100.00  E-value=2e-36  Score=223.91  Aligned_cols=76  Identities=33%  Similarity=0.441  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCcHHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhh
Q 032587           56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVSKFYLGWYL  135 (137)
Q Consensus        56 E~daAk~L~~yfTy~AvRvVl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LAlRIMeVRe~ya~~~l  135 (137)
                      .+|||++|++||||+|||||++||+|||||.|.||++|++ ||++|||+||++||+|+   |+||+|||+||+|||+|+.
T Consensus         7 ~kd~ak~L~~yfTy~AvrvVl~Ql~e~np~~~~wL~~f~~-~~~~DGd~~l~~L~~e~---~~lA~RIm~vR~~yae~~~   82 (115)
T d2peoa1           7 AKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEK---PDLALRIMTVREHIAEEIA   82 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC-C--CCHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHc-CCCcCHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999999999999999999996 89999999999999998   8999999999999999975