Citrus Sinensis ID: 032590

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIWLSVCHGFDCTN
Secondary Structure (PSIPRED)
cHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mradfkkrygggkadTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIWLSvchgfdctn
Flexible Loop (DISEMBL)
mradfkkrygggkadtaiaKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLEnidkavdrgENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIWLSVCHGFDCTN
Low Complexity Region (SEG)
MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKlvvlgillilvliiwlsvCHGFDCTN
Disordered region (IsUnstruct)
*********************LNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVD*********************YKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIWLSVCHGFDC**
Disordered Region (DISOPRED)
*RADFKKRYG******AI**SLNKEFGPIMK*********************QVSEVKSIMLENIDKAVDRGENIQNLA*******************IRRKMWYQNMKIKLVVLGILLILVLIIWLSVCHGFDCT*
Disordered Region (DISEMBL)
***********GKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIWLSVCHGFDCTN
Disordered Region (DISPRO)
MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIWLSVCHGFDCT*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENxxxxxxxxxxxxxxxxxxxxxGTQIRRKMWYQNMKIKLVVLGILLILVLIIWLSVCHGFDCTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
O23429	222	Vesicle-associated membra	yes	no	1.0	0.617	0.854	2e-58
Q9MAS5	220	Putative vesicle-associat	no	no	0.992	0.618	0.654	5e-45
Q9ZTW3	219	Vesicle-associated membra	no	no	0.985	0.616	0.681	4e-43
O48850	285	Vesicle-associated membra	no	no	0.992	0.477	0.661	7e-42
P47192	221	Vesicle-associated membra	no	no	0.985	0.610	0.666	2e-41
Q9M376	240	Vesicle-associated membra	no	no	0.883	0.504	0.512	5e-36
Q8VY69	217	Vesicle-associated membra	no	no	0.956	0.603	0.555	1e-28
Q9LFP1	221	Vesicle-associated membra	no	no	0.919	0.570	0.335	2e-18
Q9FMR5	221	Vesicle-associated membra	no	no	0.919	0.570	0.320	5e-17
O49377	219	Vesicle-associated membra	no	no	0.919	0.575	0.296	2e-13

>sp|O23429|VA724_ARATH Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2

 Score =  223 bits (569), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 129/137 (94%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           ++ADFKKRYGGGKA TAIAKSLNKEFGP+MKEHM YI+DHAEEIEKLIKVKAQVSEVKSI
Sbjct: 86  VKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSI 145

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           MLENIDKA+DRGEN+  L DKTENLR QAQ YKK GTQ+RRK+WYQNMKIKLVVLGILL+
Sbjct: 146 MLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLL 205

Query: 121 LVLIIWLSVCHGFDCTN 137
           LVLIIW+SVCHGF+CT+
Sbjct: 206 LVLIIWISVCHGFNCTD 222

Involved in the targeting and/or fusion of transport vesicles to their target membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=3 SV=2

 Score =  179 bits (454), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/136 (65%), Positives = 111/136 (81%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           ++ DF KRYGGGKA TA A SLNKEFG  +KEHM+Y  DH EEI KL KVKAQV+EVK +
Sbjct: 85  VKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGV 144

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GT+++RK+W++NMKIKL+V GI++ 
Sbjct: 145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVA 204

Query: 121 LVLIIWLSVCHGFDCT 136
           L+LII LSVCHGF CT
Sbjct: 205 LILIIILSVCHGFKCT 220

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZTW3|VA721_ARATH Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=1 SV=1

 Score =  173 bits (438), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 92/135 (68%), Positives = 110/135 (81%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           ++ DF KRYGGGKA TA A SLNKEFG  +KEHM+Y +DH +EI KL KVKAQVSEVK +
Sbjct: 85  VKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGV 144

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GTQ+RRKMW QNMKIKL+VL I++ 
Sbjct: 145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIA 204

Query: 121 LVLIIWLSVCHGFDC 135
           L+LII LSVCHGF C
Sbjct: 205 LILIIVLSVCHGFKC 219

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|O48850|VA725_ARATH Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2

 Score =  169 bits (427), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/136 (66%), Positives = 112/136 (82%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           ++ DF KRYGGGKA TA A SLN+EFG  +KEHM+Y +DH +EI KL KVKAQV+EVK +
Sbjct: 150 VKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGV 209

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GT+IRRKMW++NMKIKL+VLGI++ 
Sbjct: 210 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIIT 269

Query: 121 LVLIIWLSVCHGFDCT 136
           L+LII LSVC GF CT
Sbjct: 270 LILIIILSVCGGFKCT 285

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|P47192|VA722_ARATH Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/135 (66%), Positives = 111/135 (82%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           ++ DF KRYGGGKA TA A SLNKEFG  +KEHM+Y +DH +EI KL KVKAQVSEVK +
Sbjct: 85  VKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGV 144

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GTQ+RRKMW+QNMKIKL+VL I++ 
Sbjct: 145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIA 204

Query: 121 LVLIIWLSVCHGFDC 135
           L+LII LS+C GF+C
Sbjct: 205 LILIIILSICGGFNC 219

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M376|VA727_ARATH Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1

 Score =  149 bits (376), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 62/121 (51%), Positives = 96/121 (79%)

Query: 17  AIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQ 76
           ++A +L++EFGPI+KEHM+Y + H EE+ KL K+KAQ++EVK IM++NI+K +DRGE I+
Sbjct: 120 SVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIE 179

Query: 77  NLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIWLSVCHGFDCT 136
            L DKTENL+ QA ++++ G Q+RRKMW Q++++KL+V G +   +LI+W+  C GF C+
Sbjct: 180 LLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKCS 239

Query: 137 N 137
           +
Sbjct: 240 S 240

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY69|VA723_ARATH Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 95/135 (70%), Gaps = 4/135 (2%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           ++ DF KRYGG KA T  A SLNKEFG  +KEHM+Y +DH +EI  L K KAQVSEVKS+
Sbjct: 85  VKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSL 144

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           M+ENI+K + RG   + L         Q QA+    TQ++RK W+QNMKIKL+VL I++ 
Sbjct: 145 MMENIEKVLARGVICEMLGSS----ESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIA 200

Query: 121 LVLIIWLSVCHGFDC 135
           L+LII LSVC GF+C
Sbjct: 201 LILIIILSVCGGFNC 215

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFP1|VA713_ARATH Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 81/128 (63%), Gaps = 2/128 (1%)

Query: 5   FKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLEN 64
           F K YG     +A A S+N EF  ++ + M++  +     +++ ++K ++S+V+++M+EN
Sbjct: 88  FVKTYGRA-IHSAQAYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIEN 145

Query: 65  IDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLI 124
           IDK +DRGE ++ L DKTEN++     ++K   + R  MW++N+K+ + ++ +L ++V I
Sbjct: 146 IDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTIALILVLALVVYI 205

Query: 125 IWLSVCHG 132
               VCHG
Sbjct: 206 AMAFVCHG 213

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMR5|VA714_ARATH Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 81/128 (63%), Gaps = 2/128 (1%)

Query: 5   FKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLEN 64
           F K YG   A  A A ++N EF  ++ + M++   +   ++ L +V+ +VSE++S+M+EN
Sbjct: 88  FMKNYGK-VAHNAPAYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVEN 145

Query: 65  IDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLI 124
           I+K ++RG+ I+ L DKT  +++ +  ++K   ++RR +W +N K+ +++  +++ L+ I
Sbjct: 146 IEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKNAKLLVLLTCLIVFLLYI 205

Query: 125 IWLSVCHG 132
           I  S C G
Sbjct: 206 IIASFCGG 213

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|O49377|VA711_ARATH Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 81/128 (63%), Gaps = 2/128 (1%)

Query: 5   FKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLEN 64
           F + YG     TA+A ++N+EF  ++ + + Y  +     +++ ++K ++++V+ +M+EN
Sbjct: 87  FVRTYGRA-VHTALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIEN 144

Query: 65  IDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLI 124
           IDK +DRGE ++ L DKT N++     ++K   + R  +W++N K+ ++++ +LL+++ I
Sbjct: 145 IDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLLVIIYI 204

Query: 125 IWLSVCHG 132
               +CHG
Sbjct: 205 AVAFLCHG 212

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
297800592	222	hypothetical protein ARALYDRAFT_915207 [	1.0	0.617	0.854	3e-65
388500362	221	unknown [Lotus japonicus]	1.0	0.619	0.846	1e-64
351724103	221	uncharacterized protein LOC100527252 [Gl	1.0	0.619	0.854	3e-64
217072068	221	unknown [Medicago truncatula] gi|3885181	1.0	0.619	0.839	4e-64
255551725	221	Vesicle-associated membrane protein, put	1.0	0.619	0.905	5e-58
27805752	222	RecName: Full=Vesicle-associated membran	1.0	0.617	0.854	2e-56
240255876	222	vesicle-associated membrane protein 724	1.0	0.617	0.846	7e-56
225432294	229	PREDICTED: vesicle-associated membrane p	0.992	0.593	0.816	8e-56
225432292	221	PREDICTED: vesicle-associated membrane p	0.992	0.615	0.816	8e-56
224123220	221	predicted protein [Populus trichocarpa]	1.0	0.619	0.905	9e-56

>gi|297800592|ref|XP_002868180.1| hypothetical protein ARALYDRAFT_915207 [Arabidopsis lyrata subsp. lyrata] gi|297314016|gb|EFH44439.1| hypothetical protein ARALYDRAFT_915207 [Arabidopsis lyrata subsp. lyrata]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 128/137 (93%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           +RADFKKRYGGGKA TAIAKSLNKEFGP+MKEHM YI+DHAEEIEKLIKVKAQVSEVKSI
Sbjct: 86  VRADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSI 145

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           MLENIDKA+DRGEN+  L DKTENLR QAQ YKK GTQ+RRK+WYQNMKIKLVVLGILL+
Sbjct: 146 MLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLL 205

Query: 121 LVLIIWLSVCHGFDCTN 137
            VLIIW+SVCHGF+CT+
Sbjct: 206 FVLIIWISVCHGFNCTD 222

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500362|gb|AFK38247.1| unknown [Lotus japonicus]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/137 (84%), Positives = 128/137 (93%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           ++ADFKKRYGGGKADTA+AKSLNKEFGP+MKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI
Sbjct: 85  VKADFKKRYGGGKADTAVAKSLNKEFGPVMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 144

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           MLENIDKA+DRGEN+  LADKTE LR QAQ ++K GTQ+RRKMWYQNMKIKLVV GILL 
Sbjct: 145 MLENIDKAIDRGENMTILADKTETLRSQAQDFRKQGTQVRRKMWYQNMKIKLVVFGILLF 204

Query: 121 LVLIIWLSVCHGFDCTN 137
           LVL+IWLS+C GFDC+N
Sbjct: 205 LVLVIWLSICGGFDCSN 221

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724103|ref|NP_001237046.1| uncharacterized protein LOC100527252 [Glycine max] gi|255631884|gb|ACU16309.1| unknown [Glycine max]

 Score =  249 bits (636), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 128/137 (93%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           ++ADFKKRYGGGKADTAIAKSLNKEFGP+MKEHMKYIIDHAEEI KLIKV+AQVSEVKSI
Sbjct: 85  VKADFKKRYGGGKADTAIAKSLNKEFGPVMKEHMKYIIDHAEEIVKLIKVEAQVSEVKSI 144

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           MLENIDKA+DRGEN+  LADKTE LR QAQ ++K GTQ+RRKMWYQNMKIKLVVLGILL 
Sbjct: 145 MLENIDKAIDRGENLTILADKTETLRSQAQDFRKQGTQVRRKMWYQNMKIKLVVLGILLF 204

Query: 121 LVLIIWLSVCHGFDCTN 137
           LVL+IWLS+C GFDCTN
Sbjct: 205 LVLVIWLSICGGFDCTN 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072068|gb|ACJ84394.1| unknown [Medicago truncatula] gi|388518109|gb|AFK47116.1| unknown [Medicago truncatula]

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/137 (83%), Positives = 129/137 (94%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           ++ADFKKRYGGGKADTAIAKSLNKEFGP+MKEHMKYIIDHAEEIEKL+KVKAQVSEVKSI
Sbjct: 85  VKADFKKRYGGGKADTAIAKSLNKEFGPVMKEHMKYIIDHAEEIEKLLKVKAQVSEVKSI 144

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           MLENIDKA+DRGEN+  L+DKTE LR QAQ ++K GTQ+RRKMWYQNMKIKLVVLGILL 
Sbjct: 145 MLENIDKAIDRGENLSVLSDKTETLRAQAQDFRKQGTQVRRKMWYQNMKIKLVVLGILLF 204

Query: 121 LVLIIWLSVCHGFDCTN 137
           LVL+IWLS+C GF+C+N
Sbjct: 205 LVLVIWLSICGGFNCSN 221

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551725|ref|XP_002516908.1| Vesicle-associated membrane protein, putative [Ricinus communis] gi|223543996|gb|EEF45522.1| Vesicle-associated membrane protein, putative [Ricinus communis]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 124/137 (90%), Positives = 132/137 (96%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           M+ADFKKRYGGGKADTA+AKSLNKEFGP+MKEHMKYIIDHAEEIEKL+KVKAQVSEVKSI
Sbjct: 85  MKADFKKRYGGGKADTAVAKSLNKEFGPVMKEHMKYIIDHAEEIEKLLKVKAQVSEVKSI 144

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           ML NIDK +DRGE I NLADKTENLR+QAQAYKK GTQIRRKMWYQNMKIKLVVLGILL+
Sbjct: 145 MLGNIDKVIDRGEAITNLADKTENLRDQAQAYKKQGTQIRRKMWYQNMKIKLVVLGILLL 204

Query: 121 LVLIIWLSVCHGFDCTN 137
           LVLIIWLS+CHGFDCTN
Sbjct: 205 LVLIIWLSICHGFDCTN 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27805752|sp|O23429.2|VA724_ARATH RecName: Full=Vesicle-associated membrane protein 724; Short=AtVAMP724; AltName: Full=SYBL1-like protein gi|48310135|gb|AAT41760.1| At4g15780 [Arabidopsis thaliana] gi|50198886|gb|AAT70463.1| At4g15780 [Arabidopsis thaliana]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 129/137 (94%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           ++ADFKKRYGGGKA TAIAKSLNKEFGP+MKEHM YI+DHAEEIEKLIKVKAQVSEVKSI
Sbjct: 86  VKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSI 145

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           MLENIDKA+DRGEN+  L DKTENLR QAQ YKK GTQ+RRK+WYQNMKIKLVVLGILL+
Sbjct: 146 MLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLL 205

Query: 121 LVLIIWLSVCHGFDCTN 137
           LVLIIW+SVCHGF+CT+
Sbjct: 206 LVLIIWISVCHGFNCTD 222

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255876|ref|NP_193313.5| vesicle-associated membrane protein 724 [Arabidopsis thaliana] gi|332658251|gb|AEE83651.1| vesicle-associated membrane protein 724 [Arabidopsis thaliana]

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 116/137 (84%), Positives = 129/137 (94%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           ++ADFKKRYGGGKA TAIAKSLNKEFGP+MKEHM YI+DHAEEIEKLIKVKAQVSEVKSI
Sbjct: 86  VKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSI 145

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           MLENIDKA+DRGEN+  L DKTENLR QA+ YKK GTQ+RRK+WYQNMKIKLVVLGILL+
Sbjct: 146 MLENIDKAIDRGENLTVLTDKTENLRSQAREYKKQGTQVRRKLWYQNMKIKLVVLGILLL 205

Query: 121 LVLIIWLSVCHGFDCTN 137
           LVLIIW+SVCHGF+CT+
Sbjct: 206 LVLIIWISVCHGFNCTD 222

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432294|ref|XP_002273167.1| PREDICTED: vesicle-associated membrane protein 724 isoform 2 [Vitis vinifera]

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 111/136 (81%), Positives = 128/136 (94%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           M+ADFKKRYGGGKADTA AKSLNK+FGPIMKEHM+YIIDHAEEIEKL+KVKAQVSEVKSI
Sbjct: 93  MKADFKKRYGGGKADTATAKSLNKDFGPIMKEHMQYIIDHAEEIEKLLKVKAQVSEVKSI 152

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           MLENIDK ++RGEN+  LADKTE+LR QAQ +KK G+Q+RRKMW+QNMKIKLVVLGILLI
Sbjct: 153 MLENIDKTLERGENLTILADKTEDLRSQAQQFKKQGSQVRRKMWFQNMKIKLVVLGILLI 212

Query: 121 LVLIIWLSVCHGFDCT 136
           L L+IW+S+CHGF+C+
Sbjct: 213 LALVIWVSICHGFNCS 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432292|ref|XP_002273101.1| PREDICTED: vesicle-associated membrane protein 724 isoform 1 [Vitis vinifera] gi|297736869|emb|CBI26070.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 111/136 (81%), Positives = 128/136 (94%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           M+ADFKKRYGGGKADTA AKSLNK+FGPIMKEHM+YIIDHAEEIEKL+KVKAQVSEVKSI
Sbjct: 85  MKADFKKRYGGGKADTATAKSLNKDFGPIMKEHMQYIIDHAEEIEKLLKVKAQVSEVKSI 144

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           MLENIDK ++RGEN+  LADKTE+LR QAQ +KK G+Q+RRKMW+QNMKIKLVVLGILLI
Sbjct: 145 MLENIDKTLERGENLTILADKTEDLRSQAQQFKKQGSQVRRKMWFQNMKIKLVVLGILLI 204

Query: 121 LVLIIWLSVCHGFDCT 136
           L L+IW+S+CHGF+C+
Sbjct: 205 LALVIWVSICHGFNCS 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123220|ref|XP_002330368.1| predicted protein [Populus trichocarpa] gi|222871572|gb|EEF08703.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (563), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 124/137 (90%), Positives = 130/137 (94%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           M+ADFKKRYGGGKADTA AKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI
Sbjct: 85  MKADFKKRYGGGKADTAAAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 144

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI 120
           ML NIDKA+DRGE I  LADKTE LR+QAQAYKK GTQIRRKMWYQNMKIKLVVLG+LLI
Sbjct: 145 MLGNIDKAIDRGEAIATLADKTETLRDQAQAYKKQGTQIRRKMWYQNMKIKLVVLGVLLI 204

Query: 121 LVLIIWLSVCHGFDCTN 137
           LVLIIWLS+CHGFDC+N
Sbjct: 205 LVLIIWLSICHGFDCSN 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
TAIR|locus:2010642	219	VAMP721 "AT1G04750" [Arabidops	0.985	0.616	0.6	1.8e-39
TAIR|locus:2046595	229	SAR1 "AT2G33120" [Arabidopsis	0.985	0.589	0.592	6.1e-39
TAIR|locus:2010627	220	VAMP726 "AT1G04760" [Arabidops	0.992	0.618	0.573	9.9e-39
TAIR|locus:2046367	285	VAMP725 "AT2G32670" [Arabidops	0.992	0.477	0.573	2.1e-38
TAIR|locus:2080340	240	VAMP727 "AT3G54300" [Arabidops	0.883	0.504	0.462	3.3e-30
TAIR|locus:2046490	217	VAMP723 "AT2G33110" [Arabidops	0.956	0.603	0.481	1.2e-26
FB|FBgn0033452	218	CG1599 [Drosophila melanogaste	0.781	0.490	0.369	2.3e-16
TAIR|locus:2147952	221	VAMP713 "AT5G11150" [Arabidops	0.919	0.570	0.304	2.3e-16
TAIR|locus:2116672	219	VAMP711 "vesicle-associated me	0.919	0.575	0.273	3.3e-15
UNIPROTKB|E2R5S5	220	VAMP7 "Uncharacterized protein	0.927	0.577	0.318	5.4e-15

TAIR|locus:2010642 VAMP721 "AT1G04750" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 81/135 (60%), Positives = 95/135 (70%)

Query:     1 MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
             ++ DF KRYGGGKA TA A SLNKEFG  +KEHM+Y +DH +EI KL KVKAQVSEVK +
Sbjct:    85 VKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGV 144

Query:    61 MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXX 120
             M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GTQ+RRKMW QNMKIK         
Sbjct:   145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIA 204

Query:   121 XXXXXXXXXCHGFDC 135
                      CHGF C
Sbjct:   205 LILIIVLSVCHGFKC 219

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005768 "endosome" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0009920 "cell plate formation involved in plant-type cell wall biogenesis" evidence=IGI

GO:0072661 "protein targeting to plasma membrane" evidence=IGI

TAIR|locus:2046595 SAR1 "AT2G33120" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 80/135 (59%), Positives = 96/135 (71%)

Query:     1 MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
             ++ DF KRYGGGKA TA A SLNKEFG  +KEHM+Y +DH +EI KL KVKAQVSEVK +
Sbjct:    93 VKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGV 152

Query:    61 MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXX 120
             M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GTQ+RRKMW+QNMKIK         
Sbjct:   153 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIA 212

Query:   121 XXXXXXXXXCHGFDC 135
                      C GF+C
Sbjct:   213 LILIIILSICGGFNC 227

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0005768 "endosome" evidence=IDA;TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0009920 "cell plate formation involved in plant-type cell wall biogenesis" evidence=IGI

GO:0072661 "protein targeting to plasma membrane" evidence=IGI

TAIR|locus:2010627 VAMP726 "AT1G04760" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 78/136 (57%), Positives = 96/136 (70%)

Query:     1 MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
             ++ DF KRYGGGKA TA A SLNKEFG  +KEHM+Y  DH EEI KL KVKAQV+EVK +
Sbjct:    85 VKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGV 144

Query:    61 MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXX 120
             M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GT+++RK+W++NMKIK         
Sbjct:   145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVA 204

Query:   121 XXXXXXXXXCHGFDCT 136
                      CHGF CT
Sbjct:   205 LILIIILSVCHGFKCT 220

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005768 "endosome" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2046367 VAMP725 "AT2G32670" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 78/136 (57%), Positives = 96/136 (70%)

Query:     1 MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
             ++ DF KRYGGGKA TA A SLN+EFG  +KEHM+Y +DH +EI KL KVKAQV+EVK +
Sbjct:   150 VKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGV 209

Query:    61 MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXX 120
             M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GT+IRRKMW++NMKIK         
Sbjct:   210 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIIT 269

Query:   121 XXXXXXXXXCHGFDCT 136
                      C GF CT
Sbjct:   270 LILIIILSVCGGFKCT 285

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005768 "endosome" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

TAIR|locus:2080340 VAMP727 "AT3G54300" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 56/121 (46%), Positives = 85/121 (70%)

Query:    17 AIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQ 76
             ++A +L++EFGPI+KEHM+Y + H EE+ KL K+KAQ++EVK IM++NI+K +DRGE I+
Sbjct:   120 SVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIE 179

Query:    77 NLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXXXXXXXXXXXCHGFDCT 136
              L DKTENL+ QA ++++ G Q+RRKMW Q++++K                  C GF C+
Sbjct:   180 LLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKCS 239

Query:   137 N 137
             +
Sbjct:   240 S 240

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005768 "endosome" evidence=IDA;TAS

GO:0006623 "protein targeting to vacuole" evidence=RCA;IMP

GO:0007033 "vacuole organization" evidence=RCA;IMP

GO:0031201 "SNARE complex" evidence=IPI

TAIR|locus:2046490 VAMP723 "AT2G33110" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 65/135 (48%), Positives = 83/135 (61%)

Query:     1 MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
             ++ DF KRYGG KA T  A SLNKEFG  +KEHM+Y +DH +EI  L K KAQVSEVKS+
Sbjct:    85 VKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSL 144

Query:    61 MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXX 120
             M+ENI+K + RG  I  +   +E+   Q QA+    TQ++RK W+QNMKIK         
Sbjct:   145 MMENIEKVLARGV-ICEMLGSSES---QPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIA 200

Query:   121 XXXXXXXXXCHGFDC 135
                      C GF+C
Sbjct:   201 LILIIILSVCGGFNC 215

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=TAS

FB|FBgn0033452 CG1599 [Drosophila melanogaster (taxid:7227)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 41/111 (36%), Positives = 71/111 (63%)

Query:     3 ADFKKRY---GGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKS 59
             AD K+++    G +  TAIA S+N EF  I+ + M Y    + E++ + +V  Q+ E+K 
Sbjct:    80 ADIKQKFIQTYGLQVATAIAYSMNTEFSKILAQQMVYF-SQSREVDTISRVHGQIDELKD 138

Query:    60 IMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKI 110
             IM++NID   DRGE ++ L +KTENL   + A++KA   + R+M+++N+++
Sbjct:   139 IMVKNIDSLRDRGEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIRV 189

GO:0006886 "intracellular protein transport" evidence=IC

GO:0005484 "SNAP receptor activity" evidence=NAS

GO:0005886 "plasma membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

TAIR|locus:2147952 VAMP713 "AT5G11150" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 39/128 (30%), Positives = 71/128 (55%)

Query:     5 FKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLEN 64
             F K YG     +A A S+N EF  ++ + M++   +    +++ ++K ++S+V+++M+EN
Sbjct:    88 FVKTYGRA-IHSAQAYSMNDEFSRVLSQQMEFY-SNDPNADRMSRIKGEMSQVRNVMIEN 145

Query:    65 IDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXXXXXX 124
             IDK +DRGE ++ L DKTEN++     ++K   + R  MW++N+K+              
Sbjct:   146 IDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTIALILVLALVVYI 205

Query:   125 XXXXXCHG 132
                  CHG
Sbjct:   206 AMAFVCHG 213

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=TAS

GO:0009651 "response to salt stress" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2116672 VAMP711 "vesicle-associated membrane protein 711" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 35/128 (27%), Positives = 69/128 (53%)

Query:     5 FKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLEN 64
             F + YG     TA+A ++N+EF  ++ + + Y   +    +++ ++K ++++V+ +M+EN
Sbjct:    87 FVRTYGRA-VHTALAYAMNEEFSRVLSQQIDYY-SNDPNADRINRIKGEMNQVRGVMIEN 144

Query:    65 IDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXXXXXXXX 124
             IDK +DRGE ++ L DKT N++     ++K   + R  +W++N K+              
Sbjct:   145 IDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLLVIIYI 204

Query:   125 XXXXXCHG 132
                  CHG
Sbjct:   205 AVAFLCHG 212

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0046909 "intermembrane transport" evidence=TAS

GO:0009651 "response to salt stress" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|E2R5S5 VAMP7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 43/135 (31%), Positives = 70/135 (51%)

Query:     4 DFKKRYG---GGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEE--IEKLIKVKAQVSEVK 58
             + KKR+    G +A TA+  ++N EF  ++   +K+   H+E   I+K+++ +AQV E+K
Sbjct:    81 EIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKH---HSENKGIDKVVETQAQVDELK 137

Query:    59 SIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKXXXXXXX 118
              IM+ NID    RGE ++ L DKTENL + +  +K     + R M  +N+K+        
Sbjct:   138 GIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVS 197

Query:   119 XXXXXXXXXXXCHGF 133
                        C GF
Sbjct:   198 IVFIYIIVSPLCGGF 212

GO:1900483 "regulation of protein targeting to vacuolar membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23429	VA724_ARATH	No assigned EC number	0.8540	1.0	0.6171	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_702949.1 annotation not avaliable (222 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	137
pfam00957	89	pfam00957, Synaptobrevin, Synaptobrevin	2e-30
COG5143	190	COG5143, SNC1, Synaptobrevin/VAMP-like protein [In	5e-08
COG5143	190	COG5143, SNC1, Synaptobrevin/VAMP-like protein [In	6e-06

>gnl|CDD|201526 pfam00957, Synaptobrevin, Synaptobrevin

 Score =  104 bits (262), Expect = 2e-30
 Identities = 44/89 (49%), Positives = 67/89 (75%)

Query: 43  EIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRK 102
             +KL K++AQV EVK IM ENIDK ++RGE +  L DKTENL+  AQ ++K   +++RK
Sbjct: 1   SNDKLNKIQAQVDEVKDIMTENIDKVLERGEKLDLLVDKTENLQSSAQQFRKQARKLKRK 60

Query: 103 MWYQNMKIKLVVLGILLILVLIIWLSVCH 131
           MW++NMK+K+++  ++LIL+LII + +C 
Sbjct: 61  MWWKNMKLKIILGLVVLILILIIIIVICG 89

Length = 89

>gnl|CDD|227472 COG5143, SNC1, Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 46  KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWY 105
           KL +++ ++ E K ++ +NI+K + R E +  L D +  L   ++ + K+  +       
Sbjct: 130 KLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNLCCLI 189

Query: 106 Q 106
            
Sbjct: 190 N 190

Length = 190

>gnl|CDD|227472 COG5143, SNC1, Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 36  YIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKA 95
           Y+   A E  K   ++  + +   IM  NIDK +++G    ++ DK + L+++ +  K+ 
Sbjct: 85  YLNSIATEFLKSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRV 144

Query: 96  GTQIRRKMWYQNMKI-KLVVLGILLILVLII 125
             +   K+ Y++ K+  LV L  +L+L   +
Sbjct: 145 LNKNIEKVLYRDEKLDLLVDLSSILLLSSKM 175

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	100.0
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	99.97
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	99.97
KOG0861	198	consensus SNARE protein YKT6, synaptobrevin/VAMP s	99.77
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	99.76
COG5143	190	SNC1 Synaptobrevin/VAMP-like protein [Intracellula	99.54
COG5143	190	SNC1 Synaptobrevin/VAMP-like protein [Intracellula	98.08
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	97.29
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	96.97
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	96.7
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	95.68
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	95.5
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	94.14
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	93.71
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	93.04
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	92.63
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	91.28
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	90.66
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	87.59
PRK09400	61	secE preprotein translocase subunit SecE; Reviewed	87.43
PF04799	171	Fzo_mitofusin: fzo-like conserved region; InterPro	87.29
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	87.17
PTZ00478	81	Sec superfamily; Provisional	86.72
cd07912	418	Tweety_N N-terminal domain of the protein encoded	86.36
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	85.36
PRK10884	206	SH3 domain-containing protein; Provisional	84.86
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	82.26
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	80.21

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7e-43  Score=259.12  Aligned_cols=135  Identities=55%  Similarity=0.949  Sum_probs=130.4

Q ss_pred             ChhhhHhhhCCCCCccccccchhhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHH
Q 032590            1 MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLAD   80 (137)
Q Consensus         1 i~~~F~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~   80 (137)
                      |+++|.++| |..+.+|.+|+|+.+|+++|++.|+||.++|. .|+++++++||+||+++|.+|||++++|||+||.|++
T Consensus        83 Ik~~F~k~Y-G~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM~eNIekvldRGekiELLVd  160 (217)
T KOG0859|consen   83 IKEDFKKRY-GGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVD  160 (217)
T ss_pred             HHHHHHHHh-ccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeec
Confidence            578999999 66688999999999999999999999999998 6999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCC
Q 032590           81 KTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIWLSVCHGFDCTN  137 (137)
Q Consensus        81 kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii~~~~c~g~~C~~  137 (137)
                      ||++|++++..|++++++++|+|||+|+|+++++++++++++++|++.+||||.|.+
T Consensus       161 KTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~CgG~~~~s  217 (217)
T KOG0859|consen  161 KTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRCGGFTCPS  217 (217)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhccCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999864

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.6e-30  Score=179.02  Aligned_cols=87  Identities=33%  Similarity=0.694  Sum_probs=82.8

Q ss_pred             HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVL  123 (137)
Q Consensus        44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~  123 (137)
                      .+++.++|+||+||.+||++|++|+||||+||++|++||+.|++.|..|++.|.+++|+|||+|.|+++++++|++++++
T Consensus        28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~  107 (116)
T KOG0860|consen   28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV  107 (116)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHhh
Q 032590          124 IIWLSVC  130 (137)
Q Consensus       124 ii~~~~c  130 (137)
                      +|++++.
T Consensus       108 iiii~~~  114 (116)
T KOG0860|consen  108 VIIIYIF  114 (116)
T ss_pred             HHHHHHh
Confidence            8877654

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=99.97  E-value=2.9e-30  Score=172.27  Aligned_cols=87  Identities=44%  Similarity=0.841  Sum_probs=84.2

Q ss_pred             HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLI  124 (137)
Q Consensus        45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~i  124 (137)
                      |++.++++++++|+++|.+|++++++|||+|++|+++|++|+++|..|+++|++++|++||++||+++++++++++++++
T Consensus         3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~   82 (89)
T PF00957_consen    3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI   82 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q 032590          125 IWLSVCH  131 (137)
Q Consensus       125 i~~~~c~  131 (137)
                      |++.+||
T Consensus        83 i~~~~~g   89 (89)
T PF00957_consen   83 IIIVICG   89 (89)
T ss_dssp             HHHTT--
T ss_pred             HHHHHhC
Confidence            9999997

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.2e-18  Score=127.85  Aligned_cols=96  Identities=21%  Similarity=0.400  Sum_probs=84.4

Q ss_pred             hhhhHhhhCCCCCccccccchhhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHH
Q 032590            2 RADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADK   81 (137)
Q Consensus         2 ~~~F~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~k   81 (137)
                      .++|..+.++.+|+...+..  .+| |.|..++..| +||.+.|++.++|+++||+|.||++.|+.+|+||||||+|++|
T Consensus        98 ld~~~~k~~~~~W~~~~~~~--~~~-~~L~~~l~ky-qdP~ead~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~K  173 (198)
T KOG0861|consen   98 LDEFTTKVPATQWPVGETAD--LSY-PYLDTLLSKY-QDPAEADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSK  173 (198)
T ss_pred             HHHHhhcCcccccCcCCCcC--CCc-hhHHHHHHHh-cChhhhChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            47888888888888554444  344 4799999888 6799999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhHHHHH
Q 032590           82 TENLREQAQAYKKAGTQIRR  101 (137)
Q Consensus        82 t~~L~~~a~~F~~~a~~l~r  101 (137)
                      |+.|+.+|+.|+++|++.++
T Consensus       174 Se~Ls~qSKmfYKsAKK~Ns  193 (198)
T KOG0861|consen  174 SENLSLQSKMFYKSAKKTNS  193 (198)
T ss_pred             HHhhhHHHHHHHHHHhhcCC
Confidence            99999999999999998763

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.2e-17  Score=126.19  Aligned_cols=110  Identities=23%  Similarity=0.437  Sum_probs=98.7

Q ss_pred             ChhhhHhhhCCCCCc-cccccchhhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHH
Q 032590            1 MRADFKKRYGGGKAD-TAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLA   79 (137)
Q Consensus         1 i~~~F~~~~~~~~~~-~~~~~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~   79 (137)
                      +.++|...|+..... ..+||+| .+|++.|++..+.||+ ++..+++.++.+++.+|+.+|.+||+.++.|||.|+.|.
T Consensus        91 L~~EF~~~~~~~~~~~~~RPY~F-ieFD~~IQk~Kk~ynd-~r~~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~  168 (216)
T KOG0862|consen   91 LAQEFDKSYGKNIIQPASRPYAF-IEFDTFIQKTKKRYND-TRSQRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALS  168 (216)
T ss_pred             HHHHHHHhcccccCCccCCCeeE-EehhHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhh
Confidence            358999999544333 6799999 8999999999999964 666699999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 032590           80 DKTENLREQAQAYKKAGTQIRRKMWYQNMKIKL  112 (137)
Q Consensus        80 ~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~i  112 (137)
                      ..+.+|...|..++++|+.++++..|.+|.-++
T Consensus       169 ~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~  201 (216)
T KOG0862|consen  169 SMASELSSESRKYPKTAKGINRKSLIRKYAAYV  201 (216)
T ss_pred             hhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999887443

>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

Probab=99.54  E-value=2.5e-14  Score=106.75  Aligned_cols=98  Identities=16%  Similarity=0.229  Sum_probs=82.5

Q ss_pred             hhHhhhCCCCC-ccccccchhhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHh
Q 032590            4 DFKKRYGGGKA-DTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKT   82 (137)
Q Consensus         4 ~F~~~~~~~~~-~~~~~~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt   82 (137)
                      +|..+++..++ ++..++.+ .+|++.+++  . | ++|...|++.+++.+++|++.+|.+|++++|+|||+|+.|.++|
T Consensus        92 ~~~~s~~~~~~~d~~~~~~~-~~~d~~~e~--~-y-~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~s  166 (190)
T COG5143          92 EFLKSSALEQLIDDTVGIMR-VNIDKVIEK--G-Y-RDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLS  166 (190)
T ss_pred             HhhhhhhHhhcccCccchhh-hhHHHHHHh--h-c-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence            44445543333 34455666 688888887  2 5 56877799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHH
Q 032590           83 ENLREQAQAYKKAGTQIRRKMWYQ  106 (137)
Q Consensus        83 ~~L~~~a~~F~~~a~~l~r~~~wk  106 (137)
                      +.|...|..|++.|++.+..+||+
T Consensus       167 s~L~~~s~~~~k~akk~n~~~~~~  190 (190)
T COG5143         167 SILLLSSKMFPKSAKKSNLCCLIN  190 (190)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeC
Confidence            999999999999999999999984

>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

Probab=98.08  E-value=2.1e-05  Score=59.09  Aligned_cols=81  Identities=22%  Similarity=0.310  Sum_probs=71.6

Q ss_pred             HHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           46 KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLII  125 (137)
Q Consensus        46 ~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii  125 (137)
                      ....++...+++.++|..|+++.+++|.+..-+.++.+++++++..|++-+.+...++|||.-|+-..++....+.+-.+
T Consensus        95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~  174 (190)
T COG5143          95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSK  174 (190)
T ss_pred             hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence            45678888999999999999999999999999999999999999999999999999999999998888776665544444


Q ss_pred             H
Q 032590          126 W  126 (137)
Q Consensus       126 ~  126 (137)
                      .
T Consensus       175 ~  175 (190)
T COG5143         175 M  175 (190)
T ss_pred             H
Confidence            3

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=97.29  E-value=0.012  Score=38.68  Aligned_cols=77  Identities=19%  Similarity=0.333  Sum_probs=55.8

Q ss_pred             HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLI  124 (137)
Q Consensus        45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~i  124 (137)
                      +.++.++..+.+.-+.+.++-+++=+=.++-+.|.+.|..+..+|...++....-    .++-+-+.+++++++++++++
T Consensus        10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~----~~k~~~i~~~iv~~~~~~i~~   85 (89)
T PF00957_consen   10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWR----NYKLYIIIIIIVIIIILIIII   85 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHhHHhhhhhhhhHHHH
Confidence            5677788888888888888888888888889999999999999999887755332    234445555555555555554


Q ss_pred             H
Q 032590          125 I  125 (137)
Q Consensus       125 i  125 (137)
                      .
T Consensus        86 ~   86 (89)
T PF00957_consen   86 V   86 (89)
T ss_dssp             T
T ss_pred             H
Confidence            3

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=96.97  E-value=0.051  Score=36.07  Aligned_cols=81  Identities=12%  Similarity=0.215  Sum_probs=35.5

Q ss_pred             HHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           46 KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLII  125 (137)
Q Consensus        46 ~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii  125 (137)
                      .+..+.+.+.+.-+-...|.+.+.+.-+.|..+.+.=..+...-..=++--+++.|+.|.-.+-+++.+++.++.++||+
T Consensus         9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~yI~   88 (92)
T PF03908_consen    9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLYIL   88 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            33333333433333334444444444433333333333333322222333444556666555555555555555555555


Q ss_pred             H
Q 032590          126 W  126 (137)
Q Consensus       126 ~  126 (137)
                      +
T Consensus        89 ~   89 (92)
T PF03908_consen   89 W   89 (92)
T ss_pred             h
Confidence            4

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.70  E-value=0.033  Score=44.20  Aligned_cols=45  Identities=16%  Similarity=0.257  Sum_probs=39.2

Q ss_pred             HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHH
Q 032590           44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQ   88 (137)
Q Consensus        44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~   88 (137)
                      ...+.+++.++.||..|+++=-..+=+-|+.+|.+++.-++.+..
T Consensus       179 ~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~n  223 (269)
T KOG0811|consen  179 EQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVN  223 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Confidence            477899999999999999999999999999999998877766643

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.68  E-value=0.19  Score=40.45  Aligned_cols=73  Identities=19%  Similarity=0.353  Sum_probs=44.8

Q ss_pred             HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENL---REQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILL  119 (137)
Q Consensus        45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L---~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~  119 (137)
                      +.+.++...+.|+..+-.+=--.+...||-++.++...++-   -..+..=-+.|.+..++..  .+|+++|++++|+
T Consensus       206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaR--K~k~i~ii~~iii  281 (297)
T KOG0810|consen  206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKAR--KWKIIIIIILIII  281 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hceeeeehHHHHH
Confidence            66777778888888876666666777888777776544433   3444444556666666653  4444444444443

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=95.50  E-value=0.63  Score=36.22  Aligned_cols=46  Identities=11%  Similarity=0.293  Sum_probs=24.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 032590           76 QNLADKTENLREQAQAYKKAGTQIRRKMW--YQNMKIKLVVLGILLILV  122 (137)
Q Consensus        76 ~~L~~kt~~L~~~a~~F~~~a~~l~r~~~--wkn~k~~iii~~vv~~~~  122 (137)
                      ..|..-.+.+..+.......+.+++....  |. +.+|+++++|+++++
T Consensus       195 ~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~-~~~~~~i~~v~~~Fi  242 (251)
T PF09753_consen  195 KVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG-CWTWLMIFVVIIVFI  242 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHH
Confidence            34555555566666677776666665432  11 444444444444333

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=94.14  E-value=1  Score=29.67  Aligned_cols=75  Identities=13%  Similarity=0.375  Sum_probs=54.1

Q ss_pred             HHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           48 IKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKK------AGTQIRRKMWYQNMKIKLVVLGILLIL  121 (137)
Q Consensus        48 ~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~------~a~~l~r~~~wkn~k~~iii~~vv~~~  121 (137)
                      ..+.+.+..+...|.+.+++-   ...++.|++.|+.|......|..      .|+++=+++-.+...=.+++.+.+.++
T Consensus         4 ~~vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f   80 (92)
T PF03908_consen    4 SDVTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFF   80 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            456778889999999888654   56788899999999987777654      466777777777777666665554444


Q ss_pred             HHHH
Q 032590          122 VLII  125 (137)
Q Consensus       122 ~~ii  125 (137)
                      +.++
T Consensus        81 ~~~v   84 (92)
T PF03908_consen   81 LLVV   84 (92)
T ss_pred             HHHH
Confidence            4433

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=93.71  E-value=1.7  Score=34.11  Aligned_cols=72  Identities=13%  Similarity=0.267  Sum_probs=37.6

Q ss_pred             HHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           49 KVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLRE---QAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLI  120 (137)
Q Consensus        49 ~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~---~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~  120 (137)
                      ++..-+.|+.....+=-+.+.++.|..|.+++..++-..   ++..-...|-+-.|+..-+++..|+|+++++|+
T Consensus       189 kiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~v  263 (280)
T COG5074         189 KIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIV  263 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHH
Confidence            333344444444444445677888888888777766553   222222334444555554555555555444433

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=93.04  E-value=0.058  Score=34.75  Aligned_cols=27  Identities=33%  Similarity=0.679  Sum_probs=23.7

Q ss_pred             ChhhhHhhhCCCCCccccccchhhhhhH
Q 032590            1 MRADFKKRYGGGKADTAIAKSLNKEFGP   28 (137)
Q Consensus         1 i~~~F~~~~~~~~~~~~~~~~~~~~F~~   28 (137)
                      |+++|..+|+++++.++.||+| .+|++
T Consensus        56 i~~~F~~~~~~~~~~~a~~~~~-~~F~~   82 (83)
T PF13774_consen   56 IKQEFIQTYGGDQIKSASPYSF-KEFDS   82 (83)
T ss_dssp             HHHHHHHHCTTTTTTTSTTTTT-HHHHH
T ss_pred             HHHHHHHHcCcchhcccCCcch-hhcCC
Confidence            4689999997688899999999 89986

...

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.63  E-value=2.5  Score=29.50  Aligned_cols=38  Identities=16%  Similarity=0.121  Sum_probs=26.6

Q ss_pred             HHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 032590           66 DKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKM  103 (137)
Q Consensus        66 ~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~  103 (137)
                      +++=+-++|-|.|.+-|+.....|...++.--..+-||
T Consensus        57 ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km   94 (116)
T KOG0860|consen   57 EKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKM   94 (116)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566777888999999999998877544444443

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.28  E-value=0.19  Score=46.52  Aligned_cols=48  Identities=15%  Similarity=0.322  Sum_probs=39.7

Q ss_pred             HHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032590           60 IMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQN  107 (137)
Q Consensus        60 im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn  107 (137)
                      ....--+.+.+|||+|+.++++|++|.++|.+|...|.++.-++-.+.
T Consensus       942 ~~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~kk  989 (993)
T KOG1983|consen  942 AASGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVKK  989 (993)
T ss_pred             hhhhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhhh
Confidence            344456778899999999999999999999999999998876654443

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=90.66  E-value=4.3  Score=31.90  Aligned_cols=82  Identities=18%  Similarity=0.230  Sum_probs=41.8

Q ss_pred             HHHHHHHHHhHhHHHHHHH-------HhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 032590           44 IEKLIKVKAQVSEVKSIML-------ENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLG  116 (137)
Q Consensus        44 ~d~l~~~~~~v~~v~~im~-------~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~  116 (137)
                      .-++++.-+++.+.-+-|.       +|++.+-..-   ++-++.++.=......=-+.||..|.+ -|+-|.+.+|+++
T Consensus       187 ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~---~~~~~n~~~g~~h~d~AvksaRaaRkk-ki~c~gI~~iii~  262 (280)
T COG5074         187 IKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNV---EDAQENVEQGVGHTDKAVKSARAARKK-KIRCYGICFIIII  262 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhH---hhHHhhHHHhhhhHHHHHHHHHHHHhc-ceehhhhHHHHHH
Confidence            4566666666666555544       3444443332   222333333332222222335444443 4567888888877


Q ss_pred             HHHHHHHHHHHHh
Q 032590          117 ILLILVLIIWLSV  129 (137)
Q Consensus       117 vv~~~~~ii~~~~  129 (137)
                      +|+.+++-..+++
T Consensus       263 viv~vv~~v~~~v  275 (280)
T COG5074         263 VIVVVVFKVVPFV  275 (280)
T ss_pred             HHHHHHhcccchh
Confidence            7777775554433

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=87.59  E-value=5.1  Score=25.13  Aligned_cols=51  Identities=14%  Similarity=0.269  Sum_probs=23.8

Q ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           72 GENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLII  125 (137)
Q Consensus        72 ge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii  125 (137)
                      .++++.|+..++.+......-..+=.++.-...|   -+.++++++|.+++++|
T Consensus        19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW---~~r~iiGaiI~~i~~~i   69 (71)
T PF10779_consen   19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW---IWRTIIGAIITAIIYLI   69 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            4445555555555555544444444444433322   22345555555444443

>PRK09400 secE preprotein translocase subunit SecE; Reviewed

Probab=87.43  E-value=4.9  Score=24.79  Aligned_cols=51  Identities=16%  Similarity=0.233  Sum_probs=34.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           76 QNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIW  126 (137)
Q Consensus        76 ~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii~  126 (137)
                      +.+.+...++-.++..+-+.|++=-|+-+++..+...+..+++-++.|+|-
T Consensus         4 ~~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~Ik   54 (61)
T PRK09400          4 NKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFIIY   54 (61)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555666667777777778877777787777777666555555555543

>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases

Probab=87.29  E-value=7.7  Score=28.87  Aligned_cols=51  Identities=16%  Similarity=0.292  Sum_probs=41.1

Q ss_pred             HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHH
Q 032590           45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKA   95 (137)
Q Consensus        45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~   95 (137)
                      .-..++.++|++++.-|.+.|+++-+.-++||.+..++..|.+.|......
T Consensus       109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~e  159 (171)
T PF04799_consen  109 STFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESE  159 (171)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999999999999999888888888888777777776666543

Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=87.17  E-value=13  Score=29.84  Aligned_cols=63  Identities=19%  Similarity=0.240  Sum_probs=41.2

Q ss_pred             HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhH----HHHHHHHHHHHHhHHHHHHHHHHH
Q 032590           45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTE----NLREQAQAYKKAGTQIRRKMWYQN  107 (137)
Q Consensus        45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~----~L~~~a~~F~~~a~~l~r~~~wkn  107 (137)
                      ..+..+..-+.|+..|-++==..+.+.|+-++.++-.-+    +|+..++...+.-..-||.--|+-
T Consensus       195 ~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~  261 (283)
T COG5325         195 EEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRF  261 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchh
Confidence            567777788888888888888888899988887765444    444445555554444444433333

>PTZ00478 Sec superfamily; Provisional

Probab=86.72  E-value=4.7  Score=26.38  Aligned_cols=56  Identities=9%  Similarity=0.045  Sum_probs=38.0

Q ss_pred             HHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           69 VDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLI  124 (137)
Q Consensus        69 l~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~i  124 (137)
                      .+..+.++.+.+...+.-.++..|-+.+++=.|+-+.+-.+...+..+++-++.|+
T Consensus        10 ~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~   65 (81)
T PTZ00478         10 TDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYS   65 (81)
T ss_pred             hcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455566777777788888888888888888887777777665554444443443

>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels

Probab=86.36  E-value=19  Score=30.44  Aligned_cols=41  Identities=10%  Similarity=0.075  Sum_probs=23.4

Q ss_pred             hhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHH
Q 032590           23 NKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENID   66 (137)
Q Consensus        23 ~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~   66 (137)
                      |.+|..-..+..++.+ +  ..+-+..+.++++.+...|...++
T Consensus       104 N~~~h~gV~~t~~si~-~--an~tv~~l~nqv~~l~~al~~t~~  144 (418)
T cd07912         104 NDETHDGVVQLTYSLR-N--ANHTVAGIDNQTSDTEASLNVTVE  144 (418)
T ss_pred             cHHHhhhHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4566665655555442 1  235566666677777666655554

The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.36  E-value=6.1  Score=27.58  Aligned_cols=74  Identities=14%  Similarity=0.189  Sum_probs=37.9

Q ss_pred             HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHH----HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLAD----KTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILL  119 (137)
Q Consensus        44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~----kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~  119 (137)
                      ...++.+++.|.-.|..-.+--+++-....-|+.+.+    -|.-|..+=..|+.-|++=.++.|     .|.+++++|+
T Consensus        35 ee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~-----~~m~~f~lV~  109 (118)
T KOG3385|consen   35 EEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLL-----CWMAVFSLVA  109 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchH-----HHHHHHHHHH
Confidence            3667888888888887755444444333333333332    333344455555555555333333     3455554444


Q ss_pred             HHH
Q 032590          120 ILV  122 (137)
Q Consensus       120 ~~~  122 (137)
                      +++
T Consensus       110 ~fi  112 (118)
T KOG3385|consen  110 FFI  112 (118)
T ss_pred             HHH
Confidence            333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.86  E-value=15  Score=27.98  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=12.8

Q ss_pred             hhhhHHHHHHHhHHHHHHHHHHHHH
Q 032590           71 RGENIQNLADKTENLREQAQAYKKA   95 (137)
Q Consensus        71 Rge~L~~L~~kt~~L~~~a~~F~~~   95 (137)
                      +...+++|.+.-++|.++-..-+..
T Consensus       130 ~~~~~~~L~~~n~~L~~~l~~~~~~  154 (206)
T PRK10884        130 SDSVINGLKEENQKLKNQLIVAQKK  154 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444666655665554444443

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.26  E-value=22  Score=27.80  Aligned_cols=25  Identities=16%  Similarity=0.373  Sum_probs=10.4

Q ss_pred             HHHHHHhHhHHHHHHHHhHHHHHHh
Q 032590           47 LIKVKAQVSEVKSIMLENIDKAVDR   71 (137)
Q Consensus        47 l~~~~~~v~~v~~im~~Ni~~il~R   71 (137)
                      +...|.++-+=+++.-++|..-+.|
T Consensus       139 ~~~~qqqm~~eQDe~Ld~ls~ti~r  163 (235)
T KOG3202|consen  139 IVQLQQQMLQEQDEGLDGLSATVQR  163 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444443333

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=80.21  E-value=26  Score=27.30  Aligned_cols=11  Identities=9%  Similarity=0.160  Sum_probs=4.6

Q ss_pred             HHHHHHhHhHH
Q 032590           47 LIKVKAQVSEV   57 (137)
Q Consensus        47 l~~~~~~v~~v   57 (137)
                      +..++.++++|
T Consensus        99 ~~~Lq~~Lk~V  109 (230)
T PF03904_consen   99 QDILQDELKDV  109 (230)
T ss_pred             HHHHHHHHHhh
Confidence            34444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
4b93_A	189	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-14
2nps_A	74	Crystal Structure Of The Early Endosomal Snare Comp		2e-10
3hd7_A	91	Helical Extension Of The Neuronal Snare Complex Int		9e-07
3b5n_A	61	Structure Of The Yeast Plasma Membrane Snare Comple		9e-07
2kog_A	119	Lipid-Bound Synaptobrevin Solution Nmr Structure Le		1e-06
1sfc_A	96	Neuronal Synaptic Fusion Complex Length = 96		2e-06
1l4a_A	80	X-Ray Structure Of The Neuronal ComplexinSNARE COMP		2e-06
1kil_A	66	Three-Dimensional Structure Of The ComplexinSNARE C		1e-05
1n7s_A	63	High Resolution Structure Of A Truncated Neuronal S		1e-04
1gl2_A	65	Crystal Structure Of An Endosomal Snare Core Comple		3e-04

>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 189

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 64/107 (59%), Gaps = 6/107 (5%)
Query: 5   FKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAE--EIEKLIKVKAQVSEVKSIML 62
           F+  YG  +A TA+  ++N EF  ++   +K+   H+E   ++K+++ +AQV E+K IM+
Sbjct: 87  FQTTYGS-RAQTALPYAMNSEFSSVLAAQLKH---HSENKSLDKVMETQAQVDELKGIMV 142
Query: 63  ENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMK 109
            NID    RGE ++ L DKTENL + +  +K     + R M  +N+K
Sbjct: 143 RNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIK 189

>pdb|2NPS|A Chain A, Crystal Structure Of The Early Endosomal Snare Complex Length = 74

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 45  EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMW 104
           +K+  V+ QV EV  +M ENI K ++RGE +  L DK+E+L + A A+     Q+RR+MW
Sbjct: 8   DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMW 67
Query: 105 YQNMKIK 111
           ++  KIK
Sbjct: 68  WRGCKIK 74

>pdb|3HD7|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 91

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 43/67 (64%)
Query: 44  IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKM 103
           + +L + +AQV EV  IM  N+DK ++R + +  L D+ + L+  A  ++ +  +++RK 
Sbjct: 4   MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 63
Query: 104 WYQNMKI 110
           W++N+K+
Sbjct: 64  WWKNLKM 70

>pdb|3B5N|A Chain A, Structure Of The Yeast Plasma Membrane Snare Complex Length = 61

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 38/59 (64%)
Query: 46  KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMW 104
           +  +++A++ +   IM +NI+K  +RGE + ++ DK +NL   AQ +K+   ++R+ MW
Sbjct: 3   RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61

>pdb|2KOG|A Chain A, Lipid-Bound Synaptobrevin Solution Nmr Structure Length = 119

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 42/65 (64%)
Query: 46  KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWY 105
           +L + +AQV EV  IM  N+DK ++R + +  L D+ + L+  A  ++ +  +++RK W+
Sbjct: 34  RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 93
Query: 106 QNMKI 110
           +N+K+
Sbjct: 94  KNLKM 98

>pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex Length = 96

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 42/65 (64%)
Query: 46  KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWY 105
           +L + +AQV EV  IM  N+DK ++R + +  L D+ + L+  A  ++ +  +++RK W+
Sbjct: 31  RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 106 QNMKI 110
           +N+K+
Sbjct: 91  KNLKM 95

>pdb|1L4A|A Chain A, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 80

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 46  KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWY 105
           +L + +AQV EV  IM  N+DK ++R   I  L D+ + L+  A  ++ +  +++RK W+
Sbjct: 16  RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWW 75
Query: 106 QNMKI 110
           +N K+
Sbjct: 76  KNCKM 80

>pdb|1KIL|A Chain A, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 66

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 39/62 (62%)
Query: 46  KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWY 105
           +L + +AQV EV  IM  N+DK ++R + +  L D+ + L+  A  ++ +  +++RK W+
Sbjct: 5   RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 64
Query: 106 QN 107
           +N
Sbjct: 65  KN 66

>pdb|1N7S|A Chain A, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 63

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 46  KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMW 104
           +L + +AQV EV  IM  N+DK ++R + +  L D+ + L+  A  ++ +  +++RK W
Sbjct: 5   RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63

>pdb|1GL2|A Chain A, Crystal Structure Of An Endosomal Snare Core Complex Length = 65

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 39/57 (68%)
Query: 45  EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRR 101
           +++  ++++V  VK+IM +N+++ + RGEN+ +L +KTE+L   ++ +K    ++ R
Sbjct: 9   DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	5e-28
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	1e-25
1l4a_A	80	Synaptobrevin; snare, snare complex, membrane fusi	2e-23
2nps_A	74	VAMP-4, vesicle-associated membrane protein 4; ves	2e-22
1sfc_A	96	VAMP 2, protein (synaptobrevin 2); membrane fusion	5e-22
1n7s_A	63	Vesicle-associated membrane protein 2; neuronal sn	1e-20
3b5n_A	61	Synaptobrevin homolog 1; snare complex, syntaxin,	1e-20
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	2e-18
1gl2_A	65	Endobrevin; membrane protein, membrane fusion prot	6e-17
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	1e-14
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	8e-07
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	2e-05

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Length = 119

 Score = 99.1 bits (246), Expect = 5e-28
 Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 6/122 (4%)

Query: 9   YGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKA 68
           +    A T    +   E GP                 +L + +AQV EV  IM  N+DK 
Sbjct: 3   HMSATAATVPPAAPAGEGGPPAPPPN------LTSNRRLQQTQAQVDEVVDIMRVNVDKV 56

Query: 69  VDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIWLS 128
           ++R + +  L D+ + L+  A  ++ +  +++RK W++N+K+ +++  I  I+++II + 
Sbjct: 57  LERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVY 116

Query: 129 VC 130
             
Sbjct: 117 FS 118

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Length = 91

 Score = 91.9 bits (228), Expect = 1e-25
 Identities = 25/90 (27%), Positives = 54/90 (60%)

Query: 41  AEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIR 100
              + +L + +AQV EV  IM  N+DK ++R + +  L D+ + L+  A  ++ +  +++
Sbjct: 1   GSHMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLK 60

Query: 101 RKMWYQNMKIKLVVLGILLILVLIIWLSVC 130
           RK W++N+K+ +++  I  I+++II +   
Sbjct: 61  RKYWWKNLKMMIILGVICAIILIIIIVYFS 90

>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 80

 Score = 86.1 bits (213), Expect = 2e-23
 Identities = 22/72 (30%), Positives = 43/72 (59%)

Query: 39  DHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQ 98
              ++ ++L + +AQV EV  IM  N+DK ++R   I  L D+ + L+  A  ++ +  +
Sbjct: 9   QPVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGK 68

Query: 99  IRRKMWYQNMKI 110
           ++RK W++N K+
Sbjct: 69  LKRKFWWKNCKM 80

>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus} Length = 74

 Score = 83.4 bits (206), Expect = 2e-22
 Identities = 29/67 (43%), Positives = 44/67 (65%)

Query: 45  EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMW 104
           +K+  V+ QV EV  +M ENI K ++RGE +  L DK+E+L + A A+     Q+RR+MW
Sbjct: 8   DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMW 67

Query: 105 YQNMKIK 111
           ++  KIK
Sbjct: 68  WRGCKIK 74

>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 96

 Score = 82.8 bits (204), Expect = 5e-22
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 6/99 (6%)

Query: 12  GKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDR 71
             A T    +   E GP                 +L + +AQV EV  IM  N+DK ++R
Sbjct: 3   ATAATVPPAAPAGEGGPPAPPPNLTSNR------RLQQTQAQVDEVVDIMRVNVDKVLER 56

Query: 72  GENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKI 110
            + +  L D+ + L+  A  ++ +  +++RK W++N+K+
Sbjct: 57  DQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKM 95

>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B Length = 63

 Score = 78.3 bits (193), Expect = 1e-20
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 45  EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMW 104
            +L + +AQV EV  IM  N+DK ++R + +  L D+ + L+  A  ++ +  +++RK W
Sbjct: 4   RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63

>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 61

 Score = 77.9 bits (192), Expect = 1e-20
 Identities = 19/59 (32%), Positives = 38/59 (64%)

Query: 46  KLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMW 104
           +  +++A++ +   IM +NI+K  +RGE + ++ DK +NL   AQ +K+   ++R+ MW
Sbjct: 3   RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Length = 196

 Score = 76.5 bits (187), Expect = 2e-18
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           + ++F +++G  K  T        EF   +++  K  ID       L  +  ++ +V+ I
Sbjct: 92  LHSEFDEQHGK-KVPTVSRPYSFIEFDTFIQKTKKLYIDS-RARRNLGSINTELQDVQRI 149

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQ 106
           M+ NI++ + RGE +  L  K  NL   ++ Y++    +  +  Y 
Sbjct: 150 MVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYA 195

>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65

 Score = 69.0 bits (169), Expect = 6e-17
 Identities = 17/57 (29%), Positives = 39/57 (68%)

Query: 45  EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRR 101
           +++  ++++V  VK+IM +N+++ + RGEN+ +L +KTE+L   ++ +K    ++ R
Sbjct: 9   DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Length = 199

 Score = 66.4 bits (161), Expect = 1e-14
 Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSI 60
           +  +F K+    + D  +       +  +     +Y   +  E + + KV+A++ E K I
Sbjct: 98  VLDEFSKQVD--RIDWPVGSPATIHYTALDGHLSRY--QNPREADPMSKVQAELDETKII 153

Query: 61  MLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRR 101
           +   ++  ++RGE + +L  K+E L  Q++A+ K   +   
Sbjct: 154 LHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Length = 169

 Score = 44.8 bits (105), Expect = 8e-07
 Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEE 43
           ++  F+  YG  +A TA+  ++N EF  ++   +K+  ++   
Sbjct: 125 VKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSENHHH 166

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Length = 173

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 1   MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDH 40
           ++  F+  YG  +A TA+  ++N EF  ++   +K+  ++
Sbjct: 135 VKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	100.0
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	99.96
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	99.95
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	99.94
2nps_A	74	VAMP-4, vesicle-associated membrane protein 4; ves	99.93
1sfc_A	96	VAMP 2, protein (synaptobrevin 2); membrane fusion	99.92
1l4a_A	80	Synaptobrevin; snare, snare complex, membrane fusi	99.91
1n7s_A	63	Vesicle-associated membrane protein 2; neuronal sn	99.87
3b5n_A	61	Synaptobrevin homolog 1; snare complex, syntaxin,	99.87
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	99.83
1gl2_A	65	Endobrevin; membrane protein, membrane fusion prot	99.83
1urq_A	63	M-tomosyn isoform; transport protein, tomosyn-snar	99.76
3zym_A	310	Phosphatidylinositol-binding clathrin assembly PR	98.34
3fie_C	38	Fragment of vesicle-associated membrane protein 2;	98.21
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	97.56
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	96.29
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	91.79
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	90.07
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	89.41
1rh5_B	74	Preprotein translocase SECE subunit; protein trans	84.1
2ww9_B	80	Protein transport protein SSS1; ribonucleoprotein,	81.18
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	80.49
1urq_A	63	M-tomosyn isoform; transport protein, tomosyn-snar	80.48

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=100.00  E-value=5.4e-33  Score=185.59  Aligned_cols=87  Identities=29%  Similarity=0.592  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVL  123 (137)
Q Consensus        44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~  123 (137)
                      .|++.+++++|+||+++|.+||+++|+|||+||+|++||++|+++|..|+++|++++|+|||+|+|++++++++++++++
T Consensus         4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~   83 (91)
T 3hd7_A            4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI   83 (91)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 032590          124 IIWLSVC  130 (137)
Q Consensus       124 ii~~~~c  130 (137)
                      +|++++|
T Consensus        84 ii~~~~~   90 (91)
T 3hd7_A           84 IIIVYFS   90 (91)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHHh
Confidence            9999998

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=99.96  E-value=7.3e-32  Score=187.97  Aligned_cols=87  Identities=29%  Similarity=0.571  Sum_probs=85.2

Q ss_pred             HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVL  123 (137)
Q Consensus        44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~  123 (137)
                      .|++.+++++|+||+++|.+||+++|+|||+||+|++||++|+++|..|+++|++++|+|||+|+|++++++++++++++
T Consensus        32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii~  111 (119)
T 2kog_A           32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI  111 (119)
T ss_dssp             CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 032590          124 IIWLSVC  130 (137)
Q Consensus       124 ii~~~~c  130 (137)
                      +|++++|
T Consensus       112 iIi~~~c  118 (119)
T 2kog_A          112 IIIVYFS  118 (119)
T ss_dssp             HHHHHHH
T ss_pred             Hhhhhee
Confidence            9999999

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=99.95  E-value=4.4e-32  Score=202.54  Aligned_cols=107  Identities=34%  Similarity=0.615  Sum_probs=70.2

Q ss_pred             ChhhhHhhhCCCCCccccccchhhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHH
Q 032590            1 MRADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLAD   80 (137)
Q Consensus         1 i~~~F~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~   80 (137)
                      |+++|..+| +..+.++.||+++.+|++.|+++|++|++ |.+.|++.+++++|+||++||.+||+++|+|||+||.|++
T Consensus        83 i~~eF~~~~-~~~~~~~~~~~~~~~f~~~l~~~~~~y~d-~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L~~  160 (189)
T 4b93_A           83 VKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSE-NKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLID  160 (189)
T ss_dssp             HHHHHHHHH-GGGGGTCCTTTTHHHHHHHHHHHHHHHHC-C-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCCEE
T ss_pred             HHHHHHhhc-cccccccCCccccchhhHHHHHHHHhhhc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            468999999 66777899999999999999999999964 5556999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 032590           81 KTENLREQAQAYKKAGTQIRRKMWYQNMK  109 (137)
Q Consensus        81 kt~~L~~~a~~F~~~a~~l~r~~~wkn~k  109 (137)
                      ||++|+++|..|+++|++|+|+|||+|+|
T Consensus       161 ks~~L~~~s~~f~~~a~~l~r~mwwkn~K  189 (189)
T 4b93_A          161 KTENLVDSSVTFKTTSRNLARAMCMKNIK  189 (189)
T ss_dssp             TTCC-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999987

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=99.94  E-value=3.9e-29  Score=187.22  Aligned_cols=104  Identities=22%  Similarity=0.441  Sum_probs=41.5

Q ss_pred             ChhhhHhhhCCCCCc-cccccchhhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHH
Q 032590            1 MRADFKKRYGGGKAD-TAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLA   79 (137)
Q Consensus         1 i~~~F~~~~~~~~~~-~~~~~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~   79 (137)
                      |+++|..+|+ ..+. .+.||+| .+|++.|+++|++|+ +|.+.|++.+++++|+||++||.+||+++|+|||+|+.|+
T Consensus        92 i~~~F~~~~~-~~~~~~~~~~~~-~~f~~~l~~~~~~y~-~~~~~d~l~~~~~~l~ev~~im~~ni~~vl~Rge~l~~L~  168 (196)
T 2nut_C           92 LHSEFDEQHG-KKVPTVSRPYSF-IEFDTFIQKTKKLYI-DSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALD  168 (196)
T ss_dssp             HHHHHHHHHT-TTTTTCCSTTTT-GGGHHHHHHHHTTTS-CCC-----------------CCEEEHHHHC----------
T ss_pred             HHHHHHHhcc-chhccccCCCch-HHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            4689999995 4553 4689999 599999999999995 5666699999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032590           80 DKTENLREQAQAYKKAGTQIRRKMWYQN  107 (137)
Q Consensus        80 ~kt~~L~~~a~~F~~~a~~l~r~~~wkn  107 (137)
                      +||++|+++|..|+++|++++|+|||++
T Consensus       169 ~ks~~L~~~s~~f~~~a~~l~~~~~~~k  196 (196)
T 2nut_C          169 SKANNLSSLSKKYRQDAKYLNMRSTYAK  196 (196)
T ss_dssp             ----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999985

>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}

Probab=99.93  E-value=9.1e-27  Score=149.90  Aligned_cols=72  Identities=40%  Similarity=0.705  Sum_probs=61.9

Q ss_pred             ChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 032590           40 HAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIK  111 (137)
Q Consensus        40 ~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~  111 (137)
                      +|.+.|++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|+.+|..|+++|++++|+|||+|+|++
T Consensus         3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~~   74 (74)
T 2nps_A            3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK   74 (74)
T ss_dssp             ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            455569999999999999999999999999999999999999999999999999999999999999999974

>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.92  E-value=3.8e-25  Score=148.76  Aligned_cols=68  Identities=31%  Similarity=0.638  Sum_probs=64.2

Q ss_pred             HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 032590           44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIK  111 (137)
Q Consensus        44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~  111 (137)
                      .|++.+++.+|+||++||.+||+++|+|||+|+.|++||++|+++|..|+++|++++++|||+|+|++
T Consensus        29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~~   96 (96)
T 1sfc_A           29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM   96 (96)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            49999999999999999999999999999999999999999999999999999999999999999975

>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.91  E-value=3.7e-26  Score=149.08  Aligned_cols=70  Identities=31%  Similarity=0.629  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 032590           41 AEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKI  110 (137)
Q Consensus        41 ~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~  110 (137)
                      |.+.|++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|+++|..|+++|++++++|||+|+|+
T Consensus        11 ~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~   80 (80)
T 1l4a_A           11 VQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM   80 (80)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3345899999999999999999999999999999999999999999999999999999999999999985

>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B

Probab=99.87  E-value=1.8e-22  Score=126.02  Aligned_cols=61  Identities=31%  Similarity=0.621  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 032590           44 IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMW  104 (137)
Q Consensus        44 ~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~  104 (137)
                      .|++.+++.+|++|++||.+||+++|+|||+|+.|+++|+.|+++|..|+++|++++|+||
T Consensus         3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW   63 (63)
T 1n7s_A            3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW   63 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3899999999999999999999999999999999999999999999999999999999998

>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=99.87  E-value=2.9e-22  Score=124.33  Aligned_cols=60  Identities=32%  Similarity=0.700  Sum_probs=59.2

Q ss_pred             HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 032590           45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMW  104 (137)
Q Consensus        45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~  104 (137)
                      |++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|+.+|..|+++|++|+|+||
T Consensus         2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW   61 (61)
T 3b5n_A            2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW   61 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            789999999999999999999999999999999999999999999999999999999998

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=99.83  E-value=3.8e-23  Score=155.32  Aligned_cols=95  Identities=21%  Similarity=0.370  Sum_probs=82.3

Q ss_pred             ChhhhHhhhCCCCCccc--cccchhhhhhHHHHHHHHHHhhChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHH
Q 032590            1 MRADFKKRYGGGKADTA--IAKSLNKEFGPIMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNL   78 (137)
Q Consensus         1 i~~~F~~~~~~~~~~~~--~~~~~~~~F~~~l~~~~~~~~~~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L   78 (137)
                      |+++|..+|++..+.++  .||    +| +.|+++|++|+ +|.+.|++.+++++|+||++||.+||+++|+|||+||+|
T Consensus        98 i~~eF~~~~~~~~~~~~~~~~~----~f-~~l~~~m~~Y~-dp~~~d~l~~~q~el~evk~iM~~NI~~vl~RgekLd~L  171 (199)
T 3kyq_A           98 VLDEFSKQVDRIDWPVGSPATI----HY-TALDGHLSRYQ-NPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDL  171 (199)
T ss_dssp             HHHHHHHHSCGGGSTTCCTTTC----CC-CTHHHHHHHTT-SGGGCCCCHHHHHHHHTCCCEEESSGGGTSCTTCCHHHH
T ss_pred             HHHHHHHhccchhhhccccccc----cc-HHHHHHHHHhC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence            46899999965555433  444    46 67889998895 577779999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHhHHHHH
Q 032590           79 ADKTENLREQAQAYKKAGTQIRR  101 (137)
Q Consensus        79 ~~kt~~L~~~a~~F~~~a~~l~r  101 (137)
                      ++||++|+++|..|+++|+++++
T Consensus       172 ~~ks~~L~~~s~~F~k~a~~lns  194 (199)
T 3kyq_A          172 VSKSEVLGTQSKAFYKTARKQNS  194 (199)
T ss_dssp             HHHCSSSCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999985

>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.83  E-value=1.1e-20  Score=118.49  Aligned_cols=62  Identities=27%  Similarity=0.566  Sum_probs=52.8

Q ss_pred             ChHHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHH
Q 032590           40 HAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRR  101 (137)
Q Consensus        40 ~~~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r  101 (137)
                      +|.+.|++.+++.+|+||+.||.+||+++|+|||+|+.|+++|++|+.+|..|+++|++|+|
T Consensus         4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r   65 (65)
T 1gl2_A            4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR   65 (65)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45556999999999999999999999999999999999999999999999999999999986

>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.76  E-value=2e-18  Score=107.44  Aligned_cols=59  Identities=19%  Similarity=0.262  Sum_probs=55.8

Q ss_pred             HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 032590           45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKM  103 (137)
Q Consensus        45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~  103 (137)
                      +++..++.++++|+++|.+|+++++||||+|+.|++||++|.++|..|.+.|++|++++
T Consensus         4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky   62 (63)
T 1urq_A            4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY   62 (63)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999999999999999999999999999875

>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}

Probab=98.34  E-value=3e-07  Score=72.85  Aligned_cols=54  Identities=24%  Similarity=0.480  Sum_probs=33.8

Q ss_pred             hhhhhhHHHHHHHHHHhh----------Ch----HHHHHHHHHHHhHhHHHHHHHHhHHHHHHhhhhH
Q 032590           22 LNKEFGPIMKEHMKYIID----------HA----EEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENI   75 (137)
Q Consensus        22 ~~~~F~~~l~~~~~~~~~----------~~----~~~d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L   75 (137)
                      +...|.....++.++|..          -|    ...+.+.++++|++||++||.+||+++|+|||+|
T Consensus       243 iykrf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l  310 (310)
T 3zym_A          243 IYKKFLTRMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQNVERILARGENL  310 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC------------------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence            345666666666666521          01    2258999999999999999999999999999986

>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}

Probab=98.21  E-value=1.1e-09  Score=61.18  Aligned_cols=29  Identities=41%  Similarity=0.557  Sum_probs=27.8

Q ss_pred             HHHHHHHHhHhHHHHHHHHhHHHHHHhhh
Q 032590           45 EKLIKVKAQVSEVKSIMLENIDKAVDRGE   73 (137)
Q Consensus        45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge   73 (137)
                      +++.+++.+|+||++||.+||+++|+||+
T Consensus         9 d~l~~vq~qvdeVk~IM~~NIdkvLeRg~   37 (38)
T 3fie_C            9 RRLQQTQAQVDEVVDIMRVNVDKVLERDC   37 (38)
T ss_dssp             CSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence            78999999999999999999999999996

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=97.56  E-value=0.0048  Score=41.47  Aligned_cols=43  Identities=16%  Similarity=0.340  Sum_probs=37.2

Q ss_pred             HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHH
Q 032590           45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLRE   87 (137)
Q Consensus        45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~   87 (137)
                      +.+.++...+.|+.+++.+=-..+.+.|+-++.++...++-.+
T Consensus        21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~   63 (109)
T 3hd7_B           21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD   63 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            6788999999999999998888899999999999887766554

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=96.29  E-value=0.11  Score=33.62  Aligned_cols=76  Identities=18%  Similarity=0.172  Sum_probs=50.5

Q ss_pred             HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLI  124 (137)
Q Consensus        45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~i  124 (137)
                      +.+++++.-+.+.-+-+.++-+++=+=.++-++|...|.....+|...++..-.-+-|+|    -+.+++++++++++++
T Consensus        12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~----iii~~iv~~il~ii~~   87 (91)
T 3hd7_A           12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM----IILGVICAIILIIIIV   87 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            567777777777777777777777777888888888999999999888765544333332    3344444444444433

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=91.79  E-value=0.081  Score=36.03  Aligned_cols=60  Identities=15%  Similarity=0.065  Sum_probs=47.0

Q ss_pred             HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 032590           45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMW  104 (137)
Q Consensus        45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~  104 (137)
                      +.+++++..+.+.-+-+.+.=+++=+-.++-++|.+.|.....+|...++..-.-+-++|
T Consensus        40 ~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~   99 (119)
T 2kog_A           40 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM   99 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777777777777777777777888889999999999999998876655554444

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=90.07  E-value=2.8  Score=27.60  Aligned_cols=8  Identities=25%  Similarity=0.555  Sum_probs=3.9

Q ss_pred             HHHHHHhH
Q 032590           58 KSIMLENI   65 (137)
Q Consensus        58 ~~im~~Ni   65 (137)
                      ++-|.++|
T Consensus        47 Qge~Id~I   54 (109)
T 3hd7_B           47 QGEMIDRI   54 (109)
T ss_dssp             HHHHHHHH
T ss_pred             hhHHHHHH
Confidence            44455554

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=89.41  E-value=0.062  Score=38.69  Aligned_cols=30  Identities=27%  Similarity=0.540  Sum_probs=19.2

Q ss_pred             CCCCccccccchhhhhhHHHHHHHHHHhhC
Q 032590           11 GGKADTAIAKSLNKEFGPIMKEHMKYIIDH   40 (137)
Q Consensus        11 ~~~~~~~~~~~~~~~F~~~l~~~~~~~~~~   40 (137)
                      +..+.++.||+|+.+|++.|++.|++|+++
T Consensus       134 ~~~~~~a~pysf~~eF~~~Lk~~~~~~~~~  163 (169)
T 2vx8_A          134 GSRAQTALPYAMNSEFSSVLAAQLKHHSEN  163 (169)
T ss_dssp             TTGGGTCCTTTTHHHHHHHHSCC-------
T ss_pred             hhhhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence            345667789999889999999999999654

>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B

Probab=84.10  E-value=1.3  Score=27.62  Aligned_cols=53  Identities=11%  Similarity=0.147  Sum_probs=32.5

Q ss_pred             hHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           74 NIQNLADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLIIW  126 (137)
Q Consensus        74 ~L~~L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii~  126 (137)
                      +++.+.+...++-.++..|-+.|++=-|+-+.+-.+...+..+++-++.|+|-
T Consensus         4 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIk   56 (74)
T 1rh5_B            4 DFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIH   56 (74)
T ss_dssp             --------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666667777888888888888888888888877666555555444443

>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B

Probab=81.18  E-value=2.1  Score=26.98  Aligned_cols=48  Identities=10%  Similarity=0.039  Sum_probs=31.6

Q ss_pred             HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032590           78 LADKTENLREQAQAYKKAGTQIRRKMWYQNMKIKLVVLGILLILVLII  125 (137)
Q Consensus        78 L~~kt~~L~~~a~~F~~~a~~l~r~~~wkn~k~~iii~~vv~~~~~ii  125 (137)
                      +.+...++-.++..|-+.+++=-|+-+++-.+...+..+++-++.|+|
T Consensus        21 ~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiI   68 (80)
T 2ww9_B           21 LVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAI   68 (80)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445566667777777777778888888887776655555555553

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=80.49  E-value=7.7  Score=23.70  Aligned_cols=43  Identities=16%  Similarity=0.340  Sum_probs=36.8

Q ss_pred             HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHH
Q 032590           45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLRE   87 (137)
Q Consensus        45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~   87 (137)
                      +.+.++...+.|+.+++.+=-..+.+.|+-|+.++...+....
T Consensus        10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~   52 (77)
T 1jth_B           10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD   52 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999988777665553

>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1

Probab=80.48  E-value=7.1  Score=23.28  Aligned_cols=50  Identities=12%  Similarity=0.118  Sum_probs=40.9

Q ss_pred             HHHHHHHHhHhHHHHHHHHhHHHHHHhhhhHHHHHHHhHHHHHHHHHHHH
Q 032590           45 EKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKK   94 (137)
Q Consensus        45 d~l~~~~~~v~~v~~im~~Ni~~il~Rge~L~~L~~kt~~L~~~a~~F~~   94 (137)
                      ..+..+...+.+..+-+.+.-+++-+-.++-++|.+.|+....+|...++
T Consensus        11 ~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~   60 (63)
T 1urq_A           11 GAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMML   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55677777777777888888888888888889999999999998887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00