Citrus Sinensis ID: 032623

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MATKTLIRTGASLLNRLVSSKPNTLLVHQSNTAHHHQFPSLSKIQTSLYLPSSSDSVSLTRVASQGFLYPSGLPSLEFYLPNGNLSDEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHcccccHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHccHHccccccccccccccccEEEccccccccccccccccccccccHHHHHccccHHHHHHcccHHHHHHHHHHHcccHccc
Coil and Loop (DISEMBL)
MATKTLIRTGASLLNRLvsskpntllvhqsntahhhqfpslskiqtslylpsssdsvsltrvasqgflypsglpslefylpngnlsdepmllfpkrtfqpstirrkrnhgffarkatkGGRRVIARRIAKGRSRITA
Flexible Loop (DISEMBL)
MATKTLIRTGASLLNRLVSSKPNTLLVHQSNTAHHHQFPSLSKIQTSLYLPSSSDSVSLTRVASQGFLYPSGLPSLEFYLPNGNLSDEPMLLFPKRTfqpstirrkrnhgffarkatkggrrviarriakgrsrita
Low Complexity Region (SEG)
MATKTLIRTGASLLNRLVSSKPNTLLVHQSNTAHHHQFPSLSKIQTslylpsssdsvslTRVASQGFLYPSGLPSLEFYLPNGNLSDEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA
Disordered region (IsUnstruct)
**********************************************************LTRVASQGFLYPSGLPSLEFYLPNGNLSDEPMLLFPKRTF**********HGFFAR********VI*************
Disordered Region (DISOPRED)
***********************************************************************GLPSLEFYLPNGNLSDEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT*
Disordered Region (DISEMBL)
MATKTLIRTGASLLNRLVSSKPNTLLVHQSNTAHHHQFPSLSKIQTSLYLPSSSDSVSLTRVASQGFLYPSGLPSLEFYLPNGNLSDEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIA********
Disordered Region (DISPRO)
*******RTGASLLNRLVSSKPNTLLVHQSNTAHHHQFPSLSKIQTSLYLPSSSDSVSLTRVASQGFLYPSGLPSLEFYLPNGNLSDEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIA********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATKTLIRTGASLLNRLVSSKPNTLLVHQSNTAHHHQFPSLSKIQTSLYLPSSSDSVSLTRVASQGFLYPSGLPSLEFYLPNGNLSDEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
A6W3V3	44	50S ribosomal protein L34	yes	no	0.313	0.977	0.720	1e-09
Q15MS4	44	50S ribosomal protein L34	yes	no	0.313	0.977	0.720	1e-09
A8G7Q1	46	50S ribosomal protein L34	yes	no	0.306	0.913	0.714	4e-09
A5WBC0	44	50S ribosomal protein L34	yes	no	0.306	0.954	0.738	4e-09
Q1QEW7	44	50S ribosomal protein L34	yes	no	0.306	0.954	0.738	4e-09
Q4FPR4	44	50S ribosomal protein L34	yes	no	0.306	0.954	0.738	4e-09
Q2NQ68	47	50S ribosomal protein L34	yes	no	0.306	0.893	0.690	6e-09
A4VS85	44	50S ribosomal protein L34	yes	no	0.306	0.954	0.714	7e-09
Q7MXZ2	46	50S ribosomal protein L34	yes	no	0.306	0.913	0.690	8e-09
B2VCE4	46	50S ribosomal protein L34	yes	no	0.306	0.913	0.690	1e-08

>sp|A6W3V3|RL34_MARMS 50S ribosomal protein L34 OS=Marinomonas sp. (strain MWYL1) GN=rpmH PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 37/43 (86%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
           KRTFQPS ++RKRNHGF AR ATKGGR+VIARR A+GR  ++A
Sbjct: 2   KRTFQPSVLKRKRNHGFRARMATKGGRQVIARRRARGRKVLSA 44

Marinomonas sp. (strain MWYL1) (taxid: 400668)

>sp|Q15MS4|RL34_PSEA6 50S ribosomal protein L34 OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=rpmH PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 37/43 (86%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
           KRTFQPS ++RKR+HGF AR ATK GR+VIA R AKGR+R+TA
Sbjct: 2   KRTFQPSNLKRKRSHGFRARMATKNGRKVIANRRAKGRARLTA 44

Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) (taxid: 342610)

>sp|A8G7Q1|RL34_SERP5 50S ribosomal protein L34 OS=Serratia proteamaculans (strain 568) GN=rpmH PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
           KRTFQPS ++R R+HGF AR ATK GR+V+ARR AKGRSR+T
Sbjct: 2   KRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRSRLT 43

Serratia proteamaculans (strain 568) (taxid: 399741)

>sp|A5WBC0|RL34_PSYWF 50S ribosomal protein L34 OS=Psychrobacter sp. (strain PRwf-1) GN=rpmH PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 35/42 (83%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
           KRTFQPS I+RKR HGF AR ATK GR+V+ARR AKGR R+T
Sbjct: 2   KRTFQPSVIKRKRTHGFRARMATKKGRQVLARRRAKGRHRLT 43

Psychrobacter sp. (strain PRwf-1) (taxid: 349106)

>sp|Q1QEW7|RL34_PSYCK 50S ribosomal protein L34 OS=Psychrobacter cryohalolentis (strain K5) GN=rpmH PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 35/42 (83%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
           KRTFQPS I+RKR HGF AR ATK GR+V+ARR AKGR R+T
Sbjct: 2   KRTFQPSVIKRKRTHGFRARMATKKGRQVLARRRAKGRHRLT 43

Psychrobacter cryohalolentis (strain K5) (taxid: 335284)

>sp|Q4FPR4|RL34_PSYA2 50S ribosomal protein L34 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rpmH PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 35/42 (83%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
           KRTFQPS I+RKR HGF AR ATK GR+V+ARR AKGR R+T
Sbjct: 2   KRTFQPSVIKRKRTHGFRARMATKKGRQVLARRRAKGRHRLT 43

Psychrobacter arcticus (strain DSM 17307 / 273-4) (taxid: 259536)

>sp|Q2NQ68|RL34_SODGM 50S ribosomal protein L34 OS=Sodalis glossinidius (strain morsitans) GN=rpmH PE=3 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 36/42 (85%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
           KRTFQPS ++R R+HGF AR ATK GR+V+ARR AKGR+R+T
Sbjct: 2   KRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRTRLT 43

Sodalis glossinidius (strain morsitans) (taxid: 343509)

>sp|A4VS85|RL34_PSEU5 50S ribosomal protein L34 OS=Pseudomonas stutzeri (strain A1501) GN=rpmH PE=3 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 35/42 (83%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
           KRTFQPSTI+R R HGF AR ATK GR+V++RR AKGR R+T
Sbjct: 2   KRTFQPSTIKRARTHGFRARMATKNGRQVLSRRRAKGRKRLT 43

Pseudomonas stutzeri (strain A1501) (taxid: 379731)

>sp|Q7MXZ2|RL34_PHOLL 50S ribosomal protein L34 OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=rpmH PE=3 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 36/42 (85%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
           KRTFQPS ++R R+HGF AR ATK GR+V+ARR AKGR+R+T
Sbjct: 2   KRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRTRLT 43

Photorhabdus luminescens subsp. laumondii (strain TT01) (taxid: 243265)

>sp|B2VCE4|RL34_ERWT9 50S ribosomal protein L34 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rpmH PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
           KRTFQPS ++R R+HGF AR A K GR+V+ARR AKGRSR+T
Sbjct: 2   KRTFQPSVLKRNRSHGFRARMANKNGRQVLARRRAKGRSRLT 43

Erwinia tasmaniensis (strain DSM 17950 / Et1/99) (taxid: 338565)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
297829950	147	structural constituent of ribosome [Arab	0.985	0.918	0.630	9e-41
224134593	136	predicted protein [Populus trichocarpa]	0.956	0.963	0.647	3e-40
255560745	195	structural constituent of ribosome, puta	0.912	0.641	0.661	4e-40
79313225	147	Ribosomal protein L34 [Arabidopsis thali	0.985	0.918	0.617	5e-40
217071022	133	unknown [Medicago truncatula] gi|3884984	0.963	0.992	0.615	4e-38
449446803	147	PREDICTED: uncharacterized protein LOC10	0.992	0.925	0.608	7e-37
45725013	134	LIN1 protein [Cicer arietinum]	0.963	0.985	0.633	7e-37
225442202	147	PREDICTED: uncharacterized protein LOC10	0.970	0.904	0.589	1e-36
388492376	145	unknown [Lotus japonicus] gi|388496546|g	0.970	0.917	0.570	2e-33
351724033	130	uncharacterized protein LOC100305667 [Gl	0.905	0.953	0.589	2e-29

>gi|297829950|ref|XP_002882857.1| structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata] gi|297328697|gb|EFH59116.1| structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata]

 Score =  171 bits (433), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 110/149 (73%), Gaps = 14/149 (9%)

Query: 1   MATKTLIRTGASLLNRLVSSKPNTLLVHQSNTAHHHQ------------FPSLSKIQTSL 48
           MA KTLIR+GASL+NR +S KP T LV  +  +   Q            FPSLS +Q+SL
Sbjct: 1   MAAKTLIRSGASLMNRFLS-KPTTNLVQNNLRSSFQQIAPQGQEIPPYFFPSLSNLQSSL 59

Query: 49  YLPSSSDSVSLTRVASQGFLYPSGLPSLEFYLPNGNLSDEPMLLFPKRTFQPSTIRRKRN 108
            +   +D+ SL  +  +GFLYPSGLPSLEF+LP  + S EP+LLFPKRTFQPSTIRRKRN
Sbjct: 60  -ISRPNDTASLQELNERGFLYPSGLPSLEFFLPEVDPSSEPLLLFPKRTFQPSTIRRKRN 118

Query: 109 HGFFARKATKGGRRVIARRIAKGRSRITA 137
           HGFFARKATKGGRRVIARRIAKGR R+TA
Sbjct: 119 HGFFARKATKGGRRVIARRIAKGRHRVTA 147

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134593|ref|XP_002327442.1| predicted protein [Populus trichocarpa] gi|118482233|gb|ABK93044.1| unknown [Populus trichocarpa] gi|222835996|gb|EEE74417.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/142 (64%), Positives = 107/142 (75%), Gaps = 11/142 (7%)

Query: 1   MATKTLIRTGASLLNRLVSSK-----PNTLLVHQSNTAHHHQFPSLSKIQTSLYLPSSSD 55
           MATK LIR GASL+NRL+ SK     PN +  HQ+ T H   FPS      S + P+   
Sbjct: 1   MATKNLIRAGASLMNRLIISKNPILHPNAVSTHQTLTPH--LFPS----SVSNFQPTDFL 54

Query: 56  SVSLTRVASQGFLYPSGLPSLEFYLPNGNLSDEPMLLFPKRTFQPSTIRRKRNHGFFARK 115
           S++   VA+Q FL+PSGLPSLEF+LP+G+ S EPMLLFPKRT+QPS IRRKR HGFFARK
Sbjct: 55  SITKLAVANQDFLHPSGLPSLEFFLPDGDSSTEPMLLFPKRTYQPSVIRRKRKHGFFARK 114

Query: 116 ATKGGRRVIARRIAKGRSRITA 137
           ATKGGRRVIARRIAKGRSR+TA
Sbjct: 115 ATKGGRRVIARRIAKGRSRVTA 136

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560745|ref|XP_002521386.1| structural constituent of ribosome, putative [Ricinus communis] gi|223539464|gb|EEF41054.1| structural constituent of ribosome, putative [Ricinus communis]

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 86/130 (66%), Positives = 107/130 (82%), Gaps = 5/130 (3%)

Query: 1   MATKTLIRTGASLLNRLVSSKPNTLLVHQSNTAHHHQFPSLSKIQTSLYLPSSSDSVSLT 60
           MATKTLIRTGASL+NR+++ +   +L H         FPS+SK Q SL+ P + D++S+T
Sbjct: 1   MATKTLIRTGASLMNRMINRQ---ILAHSLEITPQ-LFPSISKFQNSLHFPQN-DTLSIT 55

Query: 61  RVASQGFLYPSGLPSLEFYLPNGNLSDEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGG 120
           R++++GFL+PSGLPSL F+LP+G+ S EPMLLFPKRTFQPS IRRKRNHGFFARKATKGG
Sbjct: 56  RLSNEGFLHPSGLPSLRFFLPDGDSSSEPMLLFPKRTFQPSLIRRKRNHGFFARKATKGG 115

Query: 121 RRVIARRIAK 130
           R+VIARRIAK
Sbjct: 116 RKVIARRIAK 125

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79313225|ref|NP_001030692.1| Ribosomal protein L34 [Arabidopsis thaliana] gi|29824329|gb|AAP04125.1| unknown protein [Arabidopsis thaliana] gi|110739249|dbj|BAF01538.1| hypothetical protein [Arabidopsis thaliana] gi|332641910|gb|AEE75431.1| Ribosomal protein L34 [Arabidopsis thaliana]

 Score =  168 bits (426), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 92/149 (61%), Positives = 109/149 (73%), Gaps = 14/149 (9%)

Query: 1   MATKTLIRTGASLLNRLVSSKPNTLLVH------------QSNTAHHHQFPSLSKIQTSL 48
           MA KTLIR+GASL+NR ++ KP T +V             Q      + FPSLS +Q+SL
Sbjct: 1   MAAKTLIRSGASLMNRFLT-KPTTNIVQNNLRSSFQYIAPQGQEIPPYFFPSLSNLQSSL 59

Query: 49  YLPSSSDSVSLTRVASQGFLYPSGLPSLEFYLPNGNLSDEPMLLFPKRTFQPSTIRRKRN 108
            +   +D+ SL  +  +GFLYPSGLPSLEF+LP  + S EP+LLFPKRTFQPSTIRRKRN
Sbjct: 60  -ISRPNDTASLQELNERGFLYPSGLPSLEFFLPEVDPSSEPLLLFPKRTFQPSTIRRKRN 118

Query: 109 HGFFARKATKGGRRVIARRIAKGRSRITA 137
           HGFFARKATKGGRRVIARRIAKGR R+TA
Sbjct: 119 HGFFARKATKGGRRVIARRIAKGRHRVTA 147

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071022|gb|ACJ83871.1| unknown [Medicago truncatula] gi|388498462|gb|AFK37297.1| unknown [Medicago truncatula]

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 102/138 (73%), Gaps = 6/138 (4%)

Query: 1   MATKTLIRTGASLLNRLVSSKPNTLLVHQSNTAHHHQFPSLSKIQTSLYLPSSSDSVSLT 60
           MA+K+L+R GA+LLNRL  S   +L+ +  N    + FPS+SK+Q     P         
Sbjct: 1   MASKSLLRNGAALLNRLSLSNSKSLINY--NNPQPYLFPSISKLQN---FPQDDAESVKK 55

Query: 61  RVASQGFLYPSGLPSLEFYLPNGNLS-DEPMLLFPKRTFQPSTIRRKRNHGFFARKATKG 119
            + S GFLYP GLPSL F+LP+G+ S DEPM+LFPKRTFQPSTIRRKRNHGFFARKAT+G
Sbjct: 56  LLCSDGFLYPCGLPSLRFFLPDGDSSSDEPMILFPKRTFQPSTIRRKRNHGFFARKATRG 115

Query: 120 GRRVIARRIAKGRSRITA 137
           GRRVIARR+AKGR RITA
Sbjct: 116 GRRVIARRVAKGRFRITA 133

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446803|ref|XP_004141160.1| PREDICTED: uncharacterized protein LOC101210601 [Cucumis sativus]

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 90/148 (60%), Positives = 108/148 (72%), Gaps = 12/148 (8%)

Query: 1   MATKTLIRTGASLLNRL--VSSKPNTLLVHQSNTAHHHQ-------FPSLSKIQTSLYLP 51
           MA+K LIRTG+SL+NRL   S+  N  +      +H H        FPS+SK QT+  L 
Sbjct: 1   MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPL- 59

Query: 52  SSSDSVSLTRVASQGFLYPSGLPSLEFYLPNGNLS--DEPMLLFPKRTFQPSTIRRKRNH 109
             +D+ SL ++ S+G  +P GLPSL F+LP+G+ S   EPMLLFPKRTFQPSTIRRKRNH
Sbjct: 60  QQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNH 119

Query: 110 GFFARKATKGGRRVIARRIAKGRSRITA 137
           GFFARKATKGGR+VIARRIAKGRSRITA
Sbjct: 120 GFFARKATKGGRKVIARRIAKGRSRITA 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45725013|emb|CAG23918.1| LIN1 protein [Cicer arietinum]

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 88/139 (63%), Positives = 104/139 (74%), Gaps = 7/139 (5%)

Query: 1   MATKTLIRTGASLLNRLVSSKPNTLLVHQSNTAHHHQFPSLSKIQTSLYLPSSSDSVSLT 60
           MA+KTL+R G +LLNRL  S   +  +  SN    + FPSLSK+Q     P +    +  
Sbjct: 1   MASKTLLRNGVALLNRLSLSN--SKSLLNSNNPQPYIFPSLSKLQN---FPQNDAESAKN 55

Query: 61  RVASQGFLYPSGLPSLEFYLPNGNL--SDEPMLLFPKRTFQPSTIRRKRNHGFFARKATK 118
            ++S+GFLYP GLPSL F+LPNG+   SDEPMLLFPKRTFQPSTIRRKRNHGFFARKATK
Sbjct: 56  LISSEGFLYPCGLPSLRFFLPNGDAPSSDEPMLLFPKRTFQPSTIRRKRNHGFFARKATK 115

Query: 119 GGRRVIARRIAKGRSRITA 137
           GGR+VIARR+AKGR RITA
Sbjct: 116 GGRKVIARRVAKGRFRITA 134

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442202|ref|XP_002276959.1| PREDICTED: uncharacterized protein LOC100265274 [Vitis vinifera] gi|297743038|emb|CBI35905.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 104/151 (68%), Gaps = 18/151 (11%)

Query: 1   MATKTLIRTGASLLNRLVSSKPNTLLVHQSNTAHHH------------QFPSLSKIQTSL 48
           MA+KTLIR GASL+  L     N  L+HQ+ T +H              FPSL+K Q SL
Sbjct: 1   MASKTLIRAGASLIKGLS----NRSLLHQNTTPNHRILLSGSVGVTPKLFPSLAKPQPSL 56

Query: 49  YLPSSSDSVSLTRVA--SQGFLYPSGLPSLEFYLPNGNLSDEPMLLFPKRTFQPSTIRRK 106
           +L  + DS  L  +A  SQ   YP GLPSL F+LP+G+ S EPMLLFPKRT+QPS I+RK
Sbjct: 57  HLHETLDSQILKELAFDSQALFYPCGLPSLRFFLPDGDSSSEPMLLFPKRTYQPSHIKRK 116

Query: 107 RNHGFFARKATKGGRRVIARRIAKGRSRITA 137
           R HGFFARKATKGGRRVIARR+AKGRSRIT 
Sbjct: 117 RTHGFFARKATKGGRRVIARRVAKGRSRITV 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492376|gb|AFK34254.1| unknown [Lotus japonicus] gi|388496546|gb|AFK36339.1| unknown [Lotus japonicus]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/149 (57%), Positives = 106/149 (71%), Gaps = 16/149 (10%)

Query: 1   MATKTLIRTGASLLNRLVSSKPNTLLVHQSNTAHHHQFPSLSKIQTSLYLPS--SSDSVS 58
           MA+KTL+R+G++LLNR  +SK  +LL    N   +H  P L +I     LPS   +D+ S
Sbjct: 1   MASKTLLRSGSTLLNRFSNSK--SLL--NPNLHPNHPLPQLFQIPPLSKLPSFPQNDADS 56

Query: 59  LTRV-ASQGFLYPSGLPSLEFYLPNGNLS---------DEPMLLFPKRTFQPSTIRRKRN 108
            +++ ASQGFLYP GLP L F+LP   +          ++PMLLFPKR++QPST+RRKR 
Sbjct: 57  PSKLLASQGFLYPCGLPDLSFFLPQATVDVSYECPSNEEDPMLLFPKRSYQPSTLRRKRV 116

Query: 109 HGFFARKATKGGRRVIARRIAKGRSRITA 137
           HGFFARKATKGGRRVIARRIAKGRSRITA
Sbjct: 117 HGFFARKATKGGRRVIARRIAKGRSRITA 145

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724033|ref|NP_001234996.1| uncharacterized protein LOC100305667 [Glycine max] gi|255626259|gb|ACU13474.1| unknown [Glycine max] gi|255645139|gb|ACU23068.1| unknown [Glycine max]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 92/134 (68%), Gaps = 10/134 (7%)

Query: 7   IRTGAS-LLNRLVSSKPNTLLVHQSNTAHHHQFPSLSKIQTSLYLPSSSDSVSLTRVASQ 65
           +R+GAS LL RL  S    LL+H  N   H Q    S  +    +   +D+    +   Q
Sbjct: 4   LRSGASSLLTRLSKS----LLLHSKNPNPHSQLLLPSLSRLPGAISPQNDAEFPHK---Q 56

Query: 66  GFLYPSGLPSLEFYLPNGNL--SDEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRRV 123
           GFLYP GLPSL F+LP G+   SD+PMLLFPKRT+QPS IRRKRNHGFFARKATKGGRRV
Sbjct: 57  GFLYPCGLPSLRFFLPQGDAPSSDDPMLLFPKRTYQPSVIRRKRNHGFFARKATKGGRRV 116

Query: 124 IARRIAKGRSRITA 137
           IARR+AKGR RITA
Sbjct: 117 IARRLAKGRFRITA 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
TAIR|locus:1009023266	201	AT3G13882 [Arabidopsis thalian	0.437	0.298	0.791	2.6e-30
TIGR_CMR|CPS_5053	44	CPS_5053 "ribosomal protein L3	0.313	0.977	0.744	3.9e-12
TIGR_CMR|SO_0007	45	SO_0007 "ribosomal protein L34	0.313	0.955	0.697	1e-11
UNIPROTKB|P0A7P5	46	rpmH "50S ribosomal subunit pr	0.306	0.913	0.690	4.5e-11
TIGR_CMR|CBU_1917	44	CBU_1917 "ribosomal protein L3	0.306	0.954	0.642	2.9e-09
UNIPROTKB|Q9KVY1	45	rpmH "50S ribosomal protein L3	0.306	0.933	0.619	3.6e-09
TIGR_CMR|VC_0007	45	VC_0007 "ribosomal protein L34	0.306	0.933	0.619	3.6e-09
TIGR_CMR|APH_0309	44	APH_0309 "ribosomal protein L3	0.313	0.977	0.651	4.7e-09
TIGR_CMR|CHY_0001	44	CHY_0001 "ribosomal protein L3	0.313	0.977	0.627	7.6e-09
DICTYBASE|DDB_G0295825	169	mrpl34 "ribosomal protein L34,	0.277	0.224	0.631	1.6e-08

TAIR|locus:1009023266 AT3G13882 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 53/67 (79%), Positives = 57/67 (85%)

Query:    78 FYLPN----GNLSD---EPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAK 130
             +YL N    GN+ D   EP+LLFPKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAK
Sbjct:   135 WYLSNVFVFGNVVDPSSEPLLLFPKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAK 194

Query:   131 GRSRITA 137
             GR R+TA
Sbjct:   195 GRHRVTA 201

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TIGR_CMR|CPS_5053 CPS_5053 "ribosomal protein L34" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 32/43 (74%), Positives = 37/43 (86%)

Query:    95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
             KRTFQPS ++RKRNHGF AR ATK GR VIARR AKGR+R++A
Sbjct:     2 KRTFQPSVLKRKRNHGFRARMATKNGRAVIARRRAKGRARLSA 44

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|SO_0007 SO_0007 "ribosomal protein L34" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query:    95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
             KRTFQPS ++RKR+HGF AR AT GGR+V+ARR AKGR+R++A
Sbjct:     3 KRTFQPSNLKRKRSHGFRARMATAGGRKVLARRRAKGRARLSA 45

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0A7P5 rpmH "50S ribosomal subunit protein L34" [Escherichia coli K-12 (taxid:83333)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 29/42 (69%), Positives = 36/42 (85%)

Query:    95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
             KRTFQPS ++R R+HGF AR ATK GR+V+ARR AKGR+R+T
Sbjct:     2 KRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLT 43

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

TIGR_CMR|CBU_1917 CBU_1917 "ribosomal protein L34" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query:    95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
             KRT+QPS  +R R HGF AR ATK GR+V+ RR AKGR R+T
Sbjct:     2 KRTYQPSKQKRNRTHGFRARMATKNGRQVLNRRRAKGRKRLT 43

GO:0003735 "structural constituent of ribosome" evidence=ISS

UNIPROTKB|Q9KVY1 rpmH "50S ribosomal protein L34" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query:    95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
             KRTFQPS ++RKR HGF AR AT  GR+V+  R AKGR R++
Sbjct:     3 KRTFQPSVLKRKRTHGFRARMATANGRKVLNARRAKGRKRLS 44

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_0007 VC_0007 "ribosomal protein L34" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query:    95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
             KRTFQPS ++RKR HGF AR AT  GR+V+  R AKGR R++
Sbjct:     3 KRTFQPSVLKRKRTHGFRARMATANGRKVLNARRAKGRKRLS 44

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|APH_0309 APH_0309 "ribosomal protein L34" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 28/43 (65%), Positives = 33/43 (76%)

Query:    95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
             KRTFQPS I RKR HGF AR +TK GRR++ RR A+GRS + A
Sbjct:     2 KRTFQPSRIVRKRRHGFRARMSTKWGRRILNRRRAQGRSILCA 44

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CHY_0001 CHY_0001 "ribosomal protein L34" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 27/43 (62%), Positives = 29/43 (67%)

Query:    95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
             KRT+QP   RRKR HGF  R  T GGR VI RR  KGR R+TA
Sbjct:     2 KRTYQPKNRRRKRVHGFLKRMRTPGGRNVIKRRRLKGRKRLTA 44

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

DICTYBASE|DDB_G0295825 mrpl34 "ribosomal protein L34, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 24/38 (63%), Positives = 29/38 (76%)

Query:    95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGR 132
             KRT+QPS + RKR HGF  R +T GGRR+I  RIA+GR
Sbjct:   127 KRTYQPSVLVRKRRHGFLKRMSTVGGRRIIKERIARGR 164

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A5WBC0	RL34_PSYWF	No assigned EC number	0.7380	0.3065	0.9545	yes	no
P0A162	RL34_PSEPU	No assigned EC number	0.7073	0.2992	0.9318	yes	no
P0A161	RL34_PSEPK	No assigned EC number	0.7073	0.2992	0.9318	yes	no
B3PIU4	RL34_CELJU	No assigned EC number	0.7142	0.3065	0.9333	yes	no
A4Y1A3	RL34_PSEMY	No assigned EC number	0.7142	0.3065	0.9545	yes	no
Q4ZL08	RL34_PSEU2	No assigned EC number	0.7073	0.2992	0.9318	yes	no
A6W3V3	RL34_MARMS	No assigned EC number	0.7209	0.3138	0.9772	yes	no
Q1I2H1	RL34_PSEE4	No assigned EC number	0.7073	0.2992	0.9318	yes	no
Q48BE9	RL34_PSE14	No assigned EC number	0.7073	0.2992	0.9318	yes	no
Q4K394	RL34_PSEF5	No assigned EC number	0.7073	0.2992	0.9318	yes	no
A8G7Q1	RL34_SERP5	No assigned EC number	0.7142	0.3065	0.9130	yes	no
Q15MS4	RL34_PSEA6	No assigned EC number	0.7209	0.3138	0.9772	yes	no
A4VS85	RL34_PSEU5	No assigned EC number	0.7142	0.3065	0.9545	yes	no
Q87TR8	RL34_PSESM	No assigned EC number	0.7073	0.2992	0.9318	yes	no
Q4FPR4	RL34_PSYA2	No assigned EC number	0.7380	0.3065	0.9545	yes	no
C3K1G4	RL34_PSEFS	No assigned EC number	0.7073	0.2992	0.9318	yes	no
B0KEU8	RL34_PSEPG	No assigned EC number	0.7073	0.2992	0.9318	yes	no
Q1QEW7	RL34_PSYCK	No assigned EC number	0.7380	0.3065	0.9545	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.3__1494__AT3G13882.1	annotation not avaliable (147 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.3__3009__AT2G13440.1	annotation not avaliable (730 aa)	•			•			•		0.922
	scaffold_202765.1	annotation not avaliable (560 aa)	•			•			•		0.891
	fgenesh2_kg.1__3647__AT1G35680.1	annotation not avaliable (215 aa)	•			•	•		•		0.852
	fgenesh2_kg.6__1501__AT5G15220.1	annotation not avaliable (154 aa)	•			•	•		•		0.844
	fgenesh2_kg.5__880__AT3G44890.1	annotation not avaliable (197 aa)				•	•		•		0.826
	fgenesh2_kg.1__466__AT1G05190.1	annotation not avaliable (223 aa)				•	•		•		0.810
	fgenesh2_kg.2__2158__AT1G78630.1	annotation not avaliable (242 aa)	•			•	•		•		0.810
	Al_scaffold_0008_1358	annotation not avaliable (208 aa)	•			•			•		0.806
	fgenesh2_kg.1__3924__AT1G48350.1	annotation not avaliable (170 aa)				•	•		•		0.785
	fgenesh2_kg.3__1104__AT3G10690.1	annotation not avaliable (950 aa)	•			•			•		0.778

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	137
pfam00468	44	pfam00468, Ribosomal_L34, Ribosomal protein L34	3e-17
PRK00399	44	PRK00399, rpmH, 50S ribosomal protein L34; Reviewe	5e-17
COG0230	44	COG0230, RpmH, Ribosomal protein L34 [Translation,	3e-14
TIGR01030	44	TIGR01030, rpmH_bact, ribosomal protein L34, bacte	1e-11
CHL00115	46	CHL00115, rpl34, ribosomal protein L34; Reviewed	0.003

>gnl|CDD|201247 pfam00468, Ribosomal_L34, Ribosomal protein L34

 Score = 69.4 bits (171), Expect = 3e-17
 Identities = 28/44 (63%), Positives = 33/44 (75%)

Query: 94  PKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
            KRT+QPS  +RKR HGF AR ATK GR+V+ RR AKGR R+T 
Sbjct: 1   MKRTYQPSNRKRKRTHGFRARMATKNGRKVLKRRRAKGRKRLTV 44

Length = 44

>gnl|CDD|179004 PRK00399, rpmH, 50S ribosomal protein L34; Reviewed

 Score = 69.0 bits (170), Expect = 5e-17
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
           KRT+QPS  +RKR HGF AR ATK GR+V+ARR AKGR R++A
Sbjct: 2   KRTYQPSKRKRKRTHGFRARMATKNGRKVLARRRAKGRKRLSA 44

Length = 44

>gnl|CDD|223308 COG0230, RpmH, Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]

 Score = 62.3 bits (152), Expect = 3e-14
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
           KRT+QPS  +RKR HGF AR ATK GR+V+ARR AKGR R++ 
Sbjct: 2   KRTYQPSKRKRKRTHGFRARMATKNGRKVLARRRAKGRKRLSV 44

Length = 44

>gnl|CDD|130102 TIGR01030, rpmH_bact, ribosomal protein L34, bacterial type

 Score = 55.2 bits (133), Expect = 1e-11
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
           KRT+QPS ++RKR HGF AR ATK GR+V+ RR AKGR ++T 
Sbjct: 2   KRTYQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLTV 44

This model describes the bacterial protein L34 and its equivalents in organelles [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 44

>gnl|CDD|177039 CHL00115, rpl34, ribosomal protein L34; Reviewed

 Score = 33.2 bits (76), Expect = 0.003
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
           KRT   +  ++ R  GF AR AT  GR+++  R  KGR ++  
Sbjct: 3   KRTLSGTKRKKVRKSGFRARMATAAGRKILNARRRKGRKKLAL 45

Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
CHL00115	46	rpl34 ribosomal protein L34; Reviewed	99.9
COG0230	44	RpmH Ribosomal protein L34 [Translation, ribosomal	99.9
TIGR01030	44	rpmH_bact ribosomal protein L34, bacterial type. T	99.89
PRK00399	44	rpmH 50S ribosomal protein L34; Reviewed	99.89
PF00468	44	Ribosomal_L34: Ribosomal protein L34; InterPro: IP	99.88
KOG4612	105	consensus Mitochondrial ribosomal protein L34 [Tra	99.56

>CHL00115 rpl34 ribosomal protein L34; Reviewed

Probab=99.90  E-value=6.2e-25  Score=143.52  Aligned_cols=45  Identities=36%  Similarity=0.609  Sum_probs=44.1

Q ss_pred             CCCCCCCCCccchhhhhhhhhhcCChhhHHHHHHHHHhCccccCC
Q 032623           93 FPKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA  137 (137)
Q Consensus        93 ~~KrT~qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk~Lt~  137 (137)
                      |+|||||||++||+|+|||++||+|++||+||++||+|||++|+|
T Consensus         1 m~KrT~qps~~krkr~hGFraRm~T~~GRkvl~rRR~KGRk~L~v   45 (46)
T CHL00115          1 MTKRTLSGTKRKKVRKSGFRARMATAAGRKILNARRRKGRKKLAL   45 (46)
T ss_pred             CCccccCCcceeecccccHHHHcCCcchHHHHHHHHHcCCceeec
Confidence            799999999999999999999999999999999999999999986

>COG0230 RpmH Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=2.1e-24  Score=140.05  Aligned_cols=44  Identities=64%  Similarity=0.949  Sum_probs=42.7

Q ss_pred             CCCCCCCCccchhhhhhhhhhcCChhhHHHHHHHHHhCccccCC
Q 032623           94 PKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA  137 (137)
Q Consensus        94 ~KrT~qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk~Lt~  137 (137)
                      +|||||||++||+|+|||++||+|++||+||++||+|||++|++
T Consensus         1 mkrTyQPs~~kRkr~hGFraRM~Tk~GR~vl~~RR~KGR~~Ls~   44 (44)
T COG0230           1 MKRTYQPSKRKRKRTHGFRARMATKNGRKVLARRRAKGRKRLSV   44 (44)
T ss_pred             CCcccCCcchhhhhhhhHHHHhcccchHHHHHHHHHcCCcccCC
Confidence            48999999999999999999999999999999999999999986

>TIGR01030 rpmH_bact ribosomal protein L34, bacterial type

Probab=99.89  E-value=4.6e-24  Score=138.29  Aligned_cols=44  Identities=61%  Similarity=0.959  Sum_probs=42.7

Q ss_pred             CCCCCCCCccchhhhhhhhhhcCChhhHHHHHHHHHhCccccCC
Q 032623           94 PKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA  137 (137)
Q Consensus        94 ~KrT~qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk~Lt~  137 (137)
                      +|||||||+++|+|+|||++||+|++||+||++||+|||++|+|
T Consensus         1 mkrT~qps~~kRkr~hGFraRm~T~~GR~vl~rRr~KGRk~Ls~   44 (44)
T TIGR01030         1 MKRTYQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLTV   44 (44)
T ss_pred             CCCCCCCcceeechhhcHHHHccChhhHHHHHHHHHcCCccccC
Confidence            48999999999999999999999999999999999999999986

This model describes the bacterial protein L34 and its equivalents in organelles.

>PRK00399 rpmH 50S ribosomal protein L34; Reviewed

Probab=99.89  E-value=6.3e-24  Score=137.64  Aligned_cols=44  Identities=66%  Similarity=0.967  Sum_probs=42.8

Q ss_pred             CCCCCCCCccchhhhhhhhhhcCChhhHHHHHHHHHhCccccCC
Q 032623           94 PKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA  137 (137)
Q Consensus        94 ~KrT~qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk~Lt~  137 (137)
                      +|||||||++||+|+|||++||+|++||+||++||+|||++|+|
T Consensus         1 mKrT~qps~~kr~r~hGFraRm~T~~GRkvl~rRR~KGR~~Lt~   44 (44)
T PRK00399          1 MKRTYQPSKRKRKRTHGFRARMATKNGRKVLARRRAKGRKRLSA   44 (44)
T ss_pred             CCCCCCCcceeechhhhHHHHccCcccHHHHHHHHHcCCccccC
Confidence            58999999999999999999999999999999999999999986

>PF00468 Ribosomal_L34: Ribosomal protein L34; InterPro: IPR000271 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.88  E-value=1.2e-23  Score=136.30  Aligned_cols=44  Identities=59%  Similarity=0.924  Sum_probs=38.5

Q ss_pred             CCCCCCCCccchhhhhhhhhhcCChhhHHHHHHHHHhCccccCC
Q 032623           94 PKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA  137 (137)
Q Consensus        94 ~KrT~qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk~Lt~  137 (137)
                      +|||||||+++|+|+|||++||+|++||+||++||+|||++|++
T Consensus         1 mkrT~qps~~kr~r~hGFr~Rm~T~~GRkvl~rRr~KGR~~Ls~   44 (44)
T PF00468_consen    1 MKRTYQPSNRKRKRKHGFRARMSTKNGRKVLKRRRAKGRKRLSV   44 (44)
T ss_dssp             ---SS-S-HHHHHHHCSHHHHHCSHHHHHHHHHHHCHTSSTSSC
T ss_pred             CCCCCCCceeeeeccccchhhhcchhHHHHHHHHHHcCCeeccC
Confidence            58999999999999999999999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L34 is one of the proteins from the large subunit of the prokaryotic ribosome. It is a small basic protein of 44 to 51 amino-acid residues []. L34 belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Eubacterial L34, Red algal chloroplast L34 and Cyanelle L34.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBO_4 3PIO_2 3PIP_2 3SGF_6 2AW4_2 2AWB_2 2VHM_2 3OFZ_2 3UOS_6 2QOX_2 ....

>KOG4612 consensus Mitochondrial ribosomal protein L34 [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=1.4e-15  Score=113.18  Aligned_cols=42  Identities=45%  Similarity=0.801  Sum_probs=40.3

Q ss_pred             CCCCCCCccchhhhhhhhhhcCChhhHHHHHHHHHhCccccC
Q 032623           95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT  136 (137)
Q Consensus        95 KrT~qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk~Lt  136 (137)
                      .++|||||+||||+|||++|.+|++|++||++|+.|||+.|+
T Consensus        63 GNeYQPSn~KRKrkhGfl~R~~s~~G~~vl~rR~lKGR~~LS  104 (105)
T KOG4612|consen   63 GNEYQPSNLKRKRKHGFLARAKSKQGSKVLKRRKLKGRWFLS  104 (105)
T ss_pred             CCccCchhhhhhhhhhhhhhhcccchhHHHHHHHhccccccc
Confidence            379999999999999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
1nkw_2	47	Crystal Structure Of The Large Ribosomal Subunit Fr		3e-06
1pnu_2	46	Crystal Structure Of A Streptomycin Dependent Ribos		4e-06
2aw4_2	46	Crystal Structure Of The Bacterial Ribosome From Es		2e-05
3mrz_4	48	Recognition Of The Amber Stop Codon By Release Fact		3e-05
2j01_7	49	Structure Of The Thermus Thermophilus 70s Ribosome		3e-05

>pdb|1NKW|2 Chain 2, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 47

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
           KRT+QP+  +R + HGF AR  TK GR ++ARR AKGR ++T
Sbjct: 2   KRTYQPNNRKRAKTHGFRARMKTKSGRNILARRRAKGRHQLT 43

>pdb|1PNU|2 Chain 2, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 46

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
           KRT+QP+  +R + HGF AR  TK GR ++ARR AKGR ++T
Sbjct: 2   KRTYQPNNRKRAKTHGFRARMKTKSGRNILARRRAKGRHQLT 43

>pdb|2AW4|2 Chain 2, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 46

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 25/30 (83%)
Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVI 124
           KRTFQPS ++R R+HGF AR ATK GR+V+
Sbjct: 2   KRTFQPSVLKRNRSHGFRARMATKNGRQVL 31

>pdb|3MRZ|4 Chain 4, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 48

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
           KRT+QP+  +R + HGF AR  T GGR+V+ RR  KGR R+T
Sbjct: 2   KRTWQPNRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLT 43

>pdb|2J01|7 Chain 7, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 49

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
           KRT+QP+  +R + HGF AR  T GGR+V+ RR  KGR R+T
Sbjct: 2   KRTWQPNRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLT 43

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
3r8s_2	46	50S ribosomal protein L34; protein biosynthesis, R	5e-16
3v2d_7	49	50S ribosomal protein L34; ribosome associated inh	6e-14
2ftc_Q	38	L34MT, MRP-L34, 39S ribosomal protein L34, mitocho	2e-09

>3r8s_2 50S ribosomal protein L34; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_2 1vs6_2 2aw4_2 2awb_2 1vt2_2 2i2v_2 2j28_2 2i2t_2* 2qao_2* 2qba_2* 2qbc_2* 2qbe_2 2qbg_2 2qbi_2* 2qbk_2* 2qov_2 2qox_2 2qoz_2* 2qp1_2* 2rdo_2 ... Length = 46

 Score = 66.0 bits (161), Expect = 5e-16
 Identities = 29/42 (69%), Positives = 36/42 (85%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
           KRTFQPS ++R R+HGF AR ATK GR+V+ARR AKGR+R+T
Sbjct: 2   KRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLT 43

>3v2d_7 50S ribosomal protein L34; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_Z 2hgj_6 2hgq_6 2hgu_6 1vsa_Z 2j03_7 2jl6_7 2jl8_7 2v47_7 2v49_7 2wdi_7 2wdj_7 2wdl_7 2wdn_7 2wh2_7 2wh4_7 2wrj_7 2wrl_7 2wro_7 2wrr_7 ... Length = 49

 Score = 60.8 bits (147), Expect = 6e-14
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 95  KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
           KRT+QP+  +R + HGF AR  T GGR+V+ RR  KGR R+T 
Sbjct: 2   KRTWQPNRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTP 44

>2ftc_Q L34MT, MRP-L34, 39S ribosomal protein L34, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 38

 Score = 48.9 bits (116), Expect = 2e-09
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 98  FQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRI 135
           +QPS I+RK  HG+  R +T  G +VI RR+ KGR  +
Sbjct: 1   YQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSL 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
3r8s_2	46	50S ribosomal protein L34; protein biosynthesis, R	99.9
3v2d_7	49	50S ribosomal protein L34; ribosome associated inh	99.89
2ftc_Q	38	L34MT, MRP-L34, 39S ribosomal protein L34, mitocho	99.83
3bbo_4	152	Ribosomal protein L34; large ribosomal subunit, sp	99.62

>3r8s_2 50S ribosomal protein L34; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_2 1vs6_2 2aw4_2 2awb_2 1vt2_2 2i2v_2 2j28_2 2i2t_2* 2qao_2* 2qba_2* 2qbc_2* 2qbe_2 2qbg_2 2qbi_2* 2qbk_2* 2qov_2 2qox_2 2qoz_2* 2qp1_2* 2rdo_2 ...

Probab=99.90  E-value=1.1e-24  Score=141.39  Aligned_cols=44  Identities=66%  Similarity=0.993  Sum_probs=42.7

Q ss_pred             CCCCCCCCccchhhhhhhhhhcCChhhHHHHHHHHHhCccccCC
Q 032623           94 PKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA  137 (137)
Q Consensus        94 ~KrT~qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk~Lt~  137 (137)
                      +|||||||+++|+|+|||++||+|++||+||++||+|||++|+|
T Consensus         1 mKrTyQPs~~kRkr~hGFraRm~T~~GRkvL~rRR~KGRk~Ls~   44 (46)
T 3r8s_2            1 MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV   44 (46)
T ss_dssp             CCCSCCCCHHHHHHHHSHHHHHTSHHHHHHHHHHHHHTCSCSSC
T ss_pred             CCCCCCCCceeechhhcHHHHccCcchhHHHHHHHHcCCceecc
Confidence            48999999999999999999999999999999999999999986

>3v2d_7 50S ribosomal protein L34; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_Z 2hgj_6 2hgq_6 2hgu_6 1vsa_Z 2j03_7 2jl6_7 2jl8_7 2v47_7 2v49_7 2wdi_7 2wdj_7 2wdl_7 2wdn_7 2wh2_7 2wh4_7 2wrj_7 2wrl_7 2wro_7 2wrr_7 ...

Probab=99.89  E-value=2.4e-24  Score=141.43  Aligned_cols=44  Identities=52%  Similarity=0.822  Sum_probs=42.7

Q ss_pred             CCCCCCCCccchhhhhhhhhhcCChhhHHHHHHHHHhCccccCC
Q 032623           94 PKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA  137 (137)
Q Consensus        94 ~KrT~qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk~Lt~  137 (137)
                      +|||||||+++|+|+|||++||+|++||+||++||+|||++|+|
T Consensus         1 MKRTyQPs~~kRkr~hGFraRm~T~~GRkVL~rRR~KGRk~Ls~   44 (49)
T 3v2d_7            1 MKRTWQPNRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTP   44 (49)
T ss_dssp             CCCSCCCCHHHHHHHHSHHHHHHSHHHHHHHHHHHHHTCSCSSC
T ss_pred             CCCCCCCCceeechhhcHHHHccCcchhHHHHHHHHcCCcEeee
Confidence            48999999999999999999999999999999999999999986

>2ftc_Q L34MT, MRP-L34, 39S ribosomal protein L34, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=99.83  E-value=1.7e-21  Score=122.21  Aligned_cols=38  Identities=47%  Similarity=0.840  Sum_probs=37.3

Q ss_pred             CCCCccchhhhhhhhhhcCChhhHHHHHHHHHhCcccc
Q 032623           98 FQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRI  135 (137)
Q Consensus        98 ~qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk~L  135 (137)
                      ||||+++|+|+|||++||+|++||+||++||+|||++|
T Consensus         1 yqPs~~kRkr~hGFraRm~T~~GRkvl~rRR~KGR~~L   38 (38)
T 2ftc_Q            1 YQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSL   38 (38)
T ss_pred             CCCccccchhhhcHHHHccChhhHHHHHHHHHcCcccC
Confidence            89999999999999999999999999999999999986

>3bbo_4 Ribosomal protein L34; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.62  E-value=3.5e-17  Score=127.20  Aligned_cols=39  Identities=38%  Similarity=0.544  Sum_probs=36.2

Q ss_pred             CCCccchhhhhhhhhhcCChhhHHHHHHHHHhCccccCC
Q 032623           99 QPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA  137 (137)
Q Consensus        99 qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk~Lt~  137 (137)
                      +|+++||||+|||++||+|++||+||+|||+||||+|++
T Consensus       102 ~pS~~kRkR~HGFraRM~Tk~GRkVL~rRRaKGRk~Ls~  140 (152)
T 3bbo_4          102 SRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKILCT  140 (152)
T ss_dssp             --CTTHHHHTSCHHHHHHSGGGTTTTHHHHTTTCSCSCC
T ss_pred             CCccceeehhhcHHHHhcChhhHHHHHHHHHhCCcEEee
Confidence            479999999999999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00