Citrus Sinensis ID: 032647

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAGIEAEYHHKNSRVSFGY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHcHHHcccccccccHHHHHHHHccccHHHHHccccccccccHHHHHHHHHHHccHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MKEEMKSCEERVKKLLemtppkgkdFLHSIEHILEREKNwvwwkrdgcppfekqsMEKKavqdgpkkrrprwrlgnkeLSQLWKWadqnpnaltdpqrvrtpaiteywkpladdmdpsagieaeyhhknsrvsfgy
Flexible Loop (DISEMBL)
MKEEMKSCEERVKKllemtppkgkdFLHSIEHILereknwvwWKRDGcppfekqsmekkavqdgpkkrrprwrlgnKELSqlwkwadqnpnaltdpqrvrTPAITEYWKPLADDMDPSAGIeaeyhhknsrvsfgy
Low Complexity Region (SEG)
MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAGIEAEYHHKNSRVSFGY
Disordered region (IsUnstruct)
************************DFLHSIEHILEREKNWVWWKRDGC*****************************ELSQLWKWAD************RTPAITEYWKP**************************
Disordered Region (DISOPRED)
*KEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGC***************************NKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLAD*************HKN**V*FGY
Disordered Region (DISEMBL)
*********ERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEK***************RPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAGIEAEYHHK********
Disordered Region (DISPRO)
MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKAV**G***RRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAGIEAEYHHKNSRVSFGY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAGIEAEYHHKNSRVSFGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q8R3N6	657	THO complex subunit 1 OS=	yes	no	0.852	0.176	0.323	2e-12
Q96FV9	657	THO complex subunit 1 OS=	yes	no	0.852	0.176	0.323	3e-12
Q9URT2	752	Uncharacterized protein P	yes	no	0.691	0.125	0.327	9e-06

>sp|Q8R3N6|THOC1_MOUSE THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 12  VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQ---------SMEKKA-- 60
           V +LL   PP G+ F   +EHIL  E+NW  WK +GCP F K+          + K+A  
Sbjct: 360 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERASDTKPTRVVRKRAAP 419

Query: 61  ---VQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDP 117
              +  GP K   +  +GN+EL++LW     N  A     R   P + E+++   +  DP
Sbjct: 420 EDFLGKGPNK---KILIGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADP 476

Query: 118 SAGIEAEYHHKNS 130
              +E+EY   N+
Sbjct: 477 ENMVESEYKAVNN 489

Regulates transcriptional elongation of a subset of genes. Participates in an apoptotic pathway which is characterized by activation of caspase-6, increases in the expression of BAK1 and BCL2L1 and activation of NF-kappa-B. This pathway does not require p53/TP53, nor does the presence of p53/TP53 affect the efficiency of cell killing. Activates a G2/M cell cycle checkpoint prior to the onset of apoptosis. Apoptosis is inhibited by association with RB1 (By similarity). Essential for early embryonic development. Required for normal gene expression during postnatal testis development.
Mus musculus (taxid: 10090)

>sp|Q96FV9|THOC1_HUMAN THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 17/133 (12%)

Query: 12  VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSM----------EKKAV 61
           V +LL   PP G+ F   +EHIL  E+NW  WK +GCP F K+            ++ A 
Sbjct: 360 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRIIRKRTAP 419

Query: 62  QD----GPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDP 117
           +D    GP K   +  +GN+EL++LW     N  A     R   P + E+++   +  DP
Sbjct: 420 EDFLGKGPTK---KILMGNEELTRLWNLCPDNMEACKSETREHMPTLEEFFEEAIEQADP 476

Query: 118 SAGIEAEYHHKNS 130
              +E EY   N+
Sbjct: 477 ENMVENEYKAVNN 489

Regulates transcriptional elongation of a subset of genes. Participates in an apoptotic pathway which is characterized by activation of caspase-6, increases in the expression of BAK1 and BCL2L1 and activation of NF-kappa-B. This pathway does not require p53/TP53, nor does the presence of p53/TP53 affect the efficiency of cell killing. Activates a G2/M cell cycle checkpoint prior to the onset of apoptosis. Apoptosis is inhibited by association with RB1.

Homo sapiens (taxid: 9606)

>sp|Q9URT2|YJU3_SCHPO Uncharacterized protein P25A2.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCP25A2.03 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 19/113 (16%)

Query: 9   EERVKKLLEMTPPKGKDFLHS---------IEHILEREKNWVWWKRDGCPPFEKQSMEKK 59
           +E   KL E++  +   FLH+         I+ I+  E NW  WK  GCP  EK  ++K 
Sbjct: 360 DEDTSKLNELSK-EAYSFLHTARCGSVQRTIKEIIHIEGNWKLWKGLGCPSLEKPLVDKA 418

Query: 60  AVQ---DGPKKR-----RPRWRLGNKELSQLWKWADQNP-NALTDPQRVRTPA 103
           A+    +G KK      + R+ +GN  LS+LW+ A +N  + L   +R R P+
Sbjct: 419 AIDEAVEGLKKLTNTPVKLRFAMGNAALSRLWEQAGENTLDDLKKEERYRIPS 471

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
296087837	613	unnamed protein product [Vitis vinifera]	0.970	0.215	0.893	7e-68
225463994	607	PREDICTED: THO complex subunit 1-like [V	0.970	0.217	0.893	8e-68
359487131	601	PREDICTED: THO complex subunit 1-like [V	0.970	0.219	0.893	8e-68
296087823	613	unnamed protein product [Vitis vinifera]	0.970	0.215	0.893	9e-68
224057238	608	predicted protein [Populus trichocarpa]	0.970	0.217	0.871	5e-65
224072965	611	predicted protein [Populus trichocarpa]	0.963	0.214	0.877	1e-64
255578237	608	nuclear matrix protein, putative [Ricinu	0.970	0.217	0.856	2e-64
356508296	605	PREDICTED: THO complex subunit 1-like [G	0.970	0.218	0.863	2e-63
449445104	607	PREDICTED: THO complex subunit 1-like [C	0.970	0.217	0.818	4e-62
449506062	483	PREDICTED: THO complex subunit 1-like [C	0.970	0.273	0.810	1e-61

>gi|296087837|emb|CBI35093.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (667), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 118/132 (89%), Positives = 128/132 (96%)

Query: 1   MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKA 60
           MKEE+KSCEERVKKLLE TPPKGK+FLH+IEHILEREKNWVWWKRDGCPPFE+Q +EKKA
Sbjct: 334 MKEEIKSCEERVKKLLETTPPKGKEFLHNIEHILEREKNWVWWKRDGCPPFERQPIEKKA 393

Query: 61  VQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
           VQDG KKRRPRWR+GNKELSQLWKWADQNPNALTDPQRVRTPA++EYWKPLA+DMD SAG
Sbjct: 394 VQDGAKKRRPRWRMGNKELSQLWKWADQNPNALTDPQRVRTPAVSEYWKPLAEDMDSSAG 453

Query: 121 IEAEYHHKNSRV 132
           IEAEYHHKN+RV
Sbjct: 454 IEAEYHHKNNRV 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463994|ref|XP_002263874.1| PREDICTED: THO complex subunit 1-like [Vitis vinifera]

 Score =  261 bits (666), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 118/132 (89%), Positives = 128/132 (96%)

Query: 1   MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKA 60
           MKEE+KSCEERVKKLLE TPPKGK+FLH+IEHILEREKNWVWWKRDGCPPFE+Q +EKKA
Sbjct: 328 MKEEIKSCEERVKKLLETTPPKGKEFLHNIEHILEREKNWVWWKRDGCPPFERQPIEKKA 387

Query: 61  VQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
           VQDG KKRRPRWR+GNKELSQLWKWADQNPNALTDPQRVRTPA++EYWKPLA+DMD SAG
Sbjct: 388 VQDGAKKRRPRWRMGNKELSQLWKWADQNPNALTDPQRVRTPAVSEYWKPLAEDMDSSAG 447

Query: 121 IEAEYHHKNSRV 132
           IEAEYHHKN+RV
Sbjct: 448 IEAEYHHKNNRV 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487131|ref|XP_002264619.2| PREDICTED: THO complex subunit 1-like [Vitis vinifera]

 Score =  261 bits (666), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 118/132 (89%), Positives = 128/132 (96%)

Query: 1   MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKA 60
           MKEE+KSCEERVKKLLEMTPPKGK+FLH+IEHILEREKNWVWWKRDGCPPFE+Q +EKKA
Sbjct: 322 MKEEIKSCEERVKKLLEMTPPKGKEFLHNIEHILEREKNWVWWKRDGCPPFERQPIEKKA 381

Query: 61  VQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
           VQDG KKRRPRWR+GNKELSQLWKWADQNPNALTDPQR RTPA++EYWKPLA+DMD SAG
Sbjct: 382 VQDGAKKRRPRWRMGNKELSQLWKWADQNPNALTDPQRARTPAVSEYWKPLAEDMDLSAG 441

Query: 121 IEAEYHHKNSRV 132
           IEAEYHHKN+RV
Sbjct: 442 IEAEYHHKNNRV 453

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087823|emb|CBI35079.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 118/132 (89%), Positives = 128/132 (96%)

Query: 1   MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKA 60
           MKEE+KSCEERVKKLLEMTPPKGK+FLH+IEHILEREKNWVWWKRDGCPPFE+Q +EKKA
Sbjct: 334 MKEEIKSCEERVKKLLEMTPPKGKEFLHNIEHILEREKNWVWWKRDGCPPFERQPIEKKA 393

Query: 61  VQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
           VQDG KKRRPRWR+GNKELSQLWKWADQNPNALTDPQR RTPA++EYWKPLA+DMD SAG
Sbjct: 394 VQDGAKKRRPRWRMGNKELSQLWKWADQNPNALTDPQRARTPAVSEYWKPLAEDMDLSAG 453

Query: 121 IEAEYHHKNSRV 132
           IEAEYHHKN+RV
Sbjct: 454 IEAEYHHKNNRV 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057238|ref|XP_002299188.1| predicted protein [Populus trichocarpa] gi|222846446|gb|EEE83993.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 115/132 (87%), Positives = 124/132 (93%)

Query: 1   MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKA 60
           MKEE++S EE VKKLLEMTPPKGKDFLH +EHILEREKNW+WWKRDGCPPFEKQ +E K 
Sbjct: 321 MKEEIRSREEHVKKLLEMTPPKGKDFLHMVEHILEREKNWLWWKRDGCPPFEKQPIENKT 380

Query: 61  VQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
           VQDG KKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTP IT+YWKPLA+DMDPSAG
Sbjct: 381 VQDGGKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPIITDYWKPLAEDMDPSAG 440

Query: 121 IEAEYHHKNSRV 132
           I+AEYHHKN+RV
Sbjct: 441 IDAEYHHKNNRV 452

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072965|ref|XP_002303943.1| predicted protein [Populus trichocarpa] gi|222841375|gb|EEE78922.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/131 (87%), Positives = 123/131 (93%)

Query: 2   KEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKAV 61
           KEE+KS EE VKKLLEMTPPKGKDFLH +EHILEREKNW+WWKRDGCPPFEKQ +E K V
Sbjct: 338 KEEIKSREEHVKKLLEMTPPKGKDFLHKVEHILEREKNWLWWKRDGCPPFEKQPIENKTV 397

Query: 62  QDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAGI 121
           QDG KKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAIT+YWKPLA+DMDPSA I
Sbjct: 398 QDGGKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITDYWKPLAEDMDPSASI 457

Query: 122 EAEYHHKNSRV 132
           EA+YHHKN+RV
Sbjct: 458 EADYHHKNNRV 468

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578237|ref|XP_002529986.1| nuclear matrix protein, putative [Ricinus communis] gi|223530509|gb|EEF32391.1| nuclear matrix protein, putative [Ricinus communis]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/132 (85%), Positives = 124/132 (93%)

Query: 1   MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKA 60
           MKE++++CEERVKKLLEMTPPKGKDFL  IEH+LEREKNWV WKRDGC PFEKQ +E K 
Sbjct: 322 MKEDIRTCEERVKKLLEMTPPKGKDFLQKIEHVLEREKNWVCWKRDGCQPFEKQPIENKT 381

Query: 61  VQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
           +Q+G KKR+PRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLA+DMDPSAG
Sbjct: 382 IQEGSKKRKPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLAEDMDPSAG 441

Query: 121 IEAEYHHKNSRV 132
           IEAEYHHKN+RV
Sbjct: 442 IEAEYHHKNNRV 453

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508296|ref|XP_003522894.1| PREDICTED: THO complex subunit 1-like [Glycine max]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/132 (86%), Positives = 124/132 (93%)

Query: 1   MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKA 60
           MKEE+ S EERVKKLLE+TPPKG +FLH IEHILEREKNWVWWKRDGC P+EKQ +EKKA
Sbjct: 322 MKEEITSWEERVKKLLELTPPKGTEFLHKIEHILEREKNWVWWKRDGCLPYEKQRIEKKA 381

Query: 61  VQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
           V DGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRV+TP+I EYWKPLA+DMDPSAG
Sbjct: 382 VPDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVQTPSIMEYWKPLAEDMDPSAG 441

Query: 121 IEAEYHHKNSRV 132
           IEA+YHHKN+RV
Sbjct: 442 IEADYHHKNNRV 453

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445104|ref|XP_004140313.1| PREDICTED: THO complex subunit 1-like [Cucumis sativus]

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 108/132 (81%), Positives = 122/132 (92%)

Query: 1   MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKA 60
           M+EE+KSCEERVKKLLE+TPP+GKDFL  IEHIL+RE NWVWWKRDGC PFEKQ +EKK 
Sbjct: 321 MREEIKSCEERVKKLLEVTPPRGKDFLQKIEHILQRENNWVWWKRDGCAPFEKQPIEKKT 380

Query: 61  VQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
           + D  KKRRPRWRLGNKELSQLWKW+DQNPNALTDPQRVR+PAI++YWKPLA+DMD SAG
Sbjct: 381 INDVTKKRRPRWRLGNKELSQLWKWSDQNPNALTDPQRVRSPAISDYWKPLAEDMDESAG 440

Query: 121 IEAEYHHKNSRV 132
           IEAEYHH+N+RV
Sbjct: 441 IEAEYHHRNNRV 452

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506062|ref|XP_004162641.1| PREDICTED: THO complex subunit 1-like [Cucumis sativus]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 107/132 (81%), Positives = 122/132 (92%)

Query: 1   MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKA 60
           M+EE+KSCEERVKKLLE+TPP+GKDFL  IEHIL+RE NWVWWKRDGC PFEKQ +EKK 
Sbjct: 332 MREEIKSCEERVKKLLEVTPPRGKDFLQKIEHILQRENNWVWWKRDGCAPFEKQPIEKKT 391

Query: 61  VQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
           + D  KKRRPRWRLGNKELSQLWKW+DQNPNALTDPQRVR+PAI++YWKPLA+DMD SAG
Sbjct: 392 INDVTKKRRPRWRLGNKELSQLWKWSDQNPNALTDPQRVRSPAISDYWKPLAEDMDESAG 451

Query: 121 IEAEYHHKNSRV 132
           IEAEYHH+N+R+
Sbjct: 452 IEAEYHHRNNRL 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2178183	599	THO1 "AT5G09860" [Arabidopsis	0.970	0.220	0.818	7.1e-61
MGI|MGI:1919668	657	Thoc1 "THO complex 1" [Mus mus	0.911	0.188	0.308	3.7e-13
UNIPROTKB|D4ABL0	657	Thoc1 "THO complex subunit 1"	0.911	0.188	0.308	3.7e-13
UNIPROTKB|F1MJV3	660	THOC1 "Uncharacterized protein	0.911	0.187	0.308	4.7e-13
UNIPROTKB|E2RNV0	657	THOC1 "Uncharacterized protein	0.911	0.188	0.308	6e-13
UNIPROTKB|F1NMW7	547	THOC1 "Uncharacterized protein	0.911	0.226	0.301	9.3e-13
UNIPROTKB|Q96FV9	657	THOC1 "THO complex subunit 1"	0.911	0.188	0.308	9.9e-13
ZFIN|ZDB-GENE-030826-9	655	thoc1 "THO complex 1" [Danio r	0.838	0.174	0.32	1.6e-12
UNIPROTKB|I3LE05	662	THOC1 "Uncharacterized protein	0.911	0.187	0.311	3.4e-12
WB|WBGene00020172	665	thoc-1 [Caenorhabditis elegans	0.911	0.186	0.284	3e-10

TAIR|locus:2178183 THO1 "AT5G09860" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 108/132 (81%), Positives = 121/132 (91%)

Query:     1 MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKA 60
             MKEE+KSCE+RVKKLLE+TPPKGK+FL ++EHILEREKNWVWWKRDGCPPFEKQ ++KK+
Sbjct:   325 MKEELKSCEDRVKKLLEITPPKGKEFLRAVEHILEREKNWVWWKRDGCPPFEKQPIDKKS 384

Query:    61 VQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
                G KKRR RWRLGNKELSQLW+WADQNPNALTD QRVRTP I +YWKPLA+DMDPSAG
Sbjct:   385 PNAGQKKRRQRWRLGNKELSQLWRWADQNPNALTDSQRVRTPDIADYWKPLAEDMDPSAG 444

Query:   121 IEAEYHHKNSRV 132
             IE EYHHKN+RV
Sbjct:   445 IEDEYHHKNNRV 456

GO:0003674 "molecular_function" evidence=ND

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=IMP

GO:0031047 "gene silencing by RNA" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

MGI|MGI:1919668 Thoc1 "THO complex 1" [Mus musculus (taxid:10090)]

 Score = 183 (69.5 bits), Expect = 3.7e-13, P = 3.7e-13
 Identities = 42/136 (30%), Positives = 68/136 (50%)

Query:    12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQS---------MEKKAVQ 62
             V +LL   PP G+ F   +EHIL  E+NW  WK +GCP F K+          + K+A  
Sbjct:   360 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERASDTKPTRVVRKRAAP 419

Query:    63 DGPKKRRPRWRL--GNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
             +    + P  ++  GN+EL++LW     N  A     R   P + E+++   +  DP   
Sbjct:   420 EDFLGKGPNKKILIGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENM 479

Query:   121 IEAEYHHKNSRVSFGY 136
             +E+EY   N+  ++G+
Sbjct:   480 VESEYKAVNNS-NYGW 494

GO:0000346 "transcription export complex" evidence=ISO

GO:0000347 "THO complex" evidence=ISO

GO:0000445 "THO complex part of transcription export complex" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=ISO;RCA

GO:0007165 "signal transduction" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=RCA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=ISO

GO:0051028 "mRNA transport" evidence=IEA

UNIPROTKB|D4ABL0 Thoc1 "THO complex subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 183 (69.5 bits), Expect = 3.7e-13, P = 3.7e-13
 Identities = 42/136 (30%), Positives = 68/136 (50%)

Query:    12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQS---------MEKKAVQ 62
             V +LL   PP G+ F   +EHIL  E+NW  WK +GCP F K+          + K+A  
Sbjct:   360 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERASDTKPTRVVRKRAAP 419

Query:    63 DGPKKRRPRWRL--GNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
             +    + P  ++  GN+EL++LW     N  A     R   P + E+++   +  DP   
Sbjct:   420 EDFLGKGPNKKILIGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENM 479

Query:   121 IEAEYHHKNSRVSFGY 136
             +E+EY   N+  ++G+
Sbjct:   480 VESEYKAVNNS-NYGW 494

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1MJV3 THOC1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 182 (69.1 bits), Expect = 4.7e-13, P = 4.7e-13
 Identities = 42/136 (30%), Positives = 68/136 (50%)

Query:    12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQ---------SMEKKAVQ 62
             V +LL   PP G+ F   +EHIL  E+NW  WK +GCP F K+         ++ K+A  
Sbjct:   363 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDSKPTRAVRKRAAP 422

Query:    63 DGPKKRRPRWRL--GNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
             +    + P  ++  GN EL++LW     N  A     R   P + E+++   +  DP   
Sbjct:   423 EDFLGKGPSKKILMGNDELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENM 482

Query:   121 IEAEYHHKNSRVSFGY 136
             +E+EY   N+  ++G+
Sbjct:   483 VESEYKAVNNS-NYGW 497

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E2RNV0 THOC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 6.0e-13, P = 6.0e-13
 Identities = 42/136 (30%), Positives = 67/136 (49%)

Query:    12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQ-SMEKKAVQDGPKKRRP 70
             V +LL   PP G+ F   +EHIL  E+NW  WK +GCP F K+ + + K  +   K+  P
Sbjct:   360 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRVARKRTAP 419

Query:    71 ----------RWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
                       +  +GN+EL++LW     N  A     R   P + E+++   +  DP   
Sbjct:   420 EDFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENM 479

Query:   121 IEAEYHHKNSRVSFGY 136
             +E EY   N+  ++G+
Sbjct:   480 VENEYKAVNNS-NYGW 494

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NMW7 THOC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 9.3e-13, P = 9.3e-13
 Identities = 41/136 (30%), Positives = 67/136 (49%)

Query:    12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSM-EKKAVQDGPKKRRP 70
             V +LL   PP G+ F   +EHIL  E+NW  WK +GCP F K+   + K ++   K+  P
Sbjct:   249 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERPPDSKPMRPARKRPAP 308

Query:    71 ----------RWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
                       +  +GN+EL++LW     N  A     R   P + E+++   +  DP   
Sbjct:   309 EDFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSESREYMPTLEEFFEEAIEQADPENM 368

Query:   121 IEAEYHHKNSRVSFGY 136
             +E +Y   N+  ++G+
Sbjct:   369 VENKYKAVNNS-NYGW 383

GO:0007165 "signal transduction" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

UNIPROTKB|Q96FV9 THOC1 "THO complex subunit 1" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 9.9e-13, P = 9.9e-13
 Identities = 42/136 (30%), Positives = 67/136 (49%)

Query:    12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQ-SMEKKAVQDGPKKRRP 70
             V +LL   PP G+ F   +EHIL  E+NW  WK +GCP F K+ + + K  +   K+  P
Sbjct:   360 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRIIRKRTAP 419

Query:    71 ----------RWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
                       +  +GN+EL++LW     N  A     R   P + E+++   +  DP   
Sbjct:   420 EDFLGKGPTKKILMGNEELTRLWNLCPDNMEACKSETREHMPTLEEFFEEAIEQADPENM 479

Query:   121 IEAEYHHKNSRVSFGY 136
             +E EY   N+  ++G+
Sbjct:   480 VENEYKAVNNS-NYGW 494

GO:0007165 "signal transduction" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0000346 "transcription export complex" evidence=IDA

GO:0000347 "THO complex" evidence=IDA

GO:0000445 "THO complex part of transcription export complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006915 "apoptotic process" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=IDA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IDA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006396 "RNA processing" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

ZFIN|ZDB-GENE-030826-9 thoc1 "THO complex 1" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 40/125 (32%), Positives = 63/125 (50%)

Query:    12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQS-MEKKAVQDGPKKRRP 70
             V +LL+  PP G  F   +EHIL  E+NW  WK +GCP F K+   E K ++   K++ P
Sbjct:   361 VYQLLKEIPPDGDKFGSMVEHILNTEENWNSWKNEGCPSFVKERPAETKPIRPSRKRQAP 420

Query:    71 ----------RWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
                       +  +GN EL++LW     N  A     R   P++ ++++   +  DP+  
Sbjct:   421 EDFLGKGPDRKILMGNDELTRLWNLNPDNMEACKSENREFMPSLEDFFEEAIEQADPANM 480

Query:   121 IEAEY 125
             +E EY
Sbjct:   481 VEDEY 485

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|I3LE05 THOC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 174 (66.3 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 43/138 (31%), Positives = 68/138 (49%)

Query:    12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQ-SMEKKAVQDGPKKRRP 70
             V +LL   PP G+ F   +EHIL  E+NW  WK +GCP F K+ + + K  +   K+  P
Sbjct:   363 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRVVRKRTAP 422

Query:    71 ----------RWRLGNKELSQLWKWADQNPNALTDPQRVRT--PAITEYWKPLADDMDPS 118
                       +  +GN+EL++LW     N  A     R R   P + E+++   +  DP 
Sbjct:   423 EDFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSETRPREYMPTLEEFFEEAIEQADPE 482

Query:   119 AGIEAEYHHKNSRVSFGY 136
               +E EY   N+  ++G+
Sbjct:   483 NMVENEYKAVNNS-NYGW 499

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

WB|WBGene00020172 thoc-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 156 (60.0 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 37/130 (28%), Positives = 65/130 (50%)

Query:     5 MKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDG 64
             +  CE++  +LL  T P+G  F+  ++ I+ RE+ W  WK   C  F +++ +K A+Q  
Sbjct:   347 VSECEDKCYRLLADTMPRGTAFVAGLKRIMLREQEWNTWKNANCADFSEKA-DKGAMQMY 405

Query:    65 PKKRRPRWR-----LGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSA 119
              K++R  +      LG  EL++LW        A    +R   P + ++ +   D+MDP  
Sbjct:   406 KKRQRIPFNPNSLDLGTPELTKLWTNEPDVLKACKSDKRKFIPKLPDFIRDPIDEMDPEQ 465

Query:   120 GIEAEYHHKN 129
              +E +Y   N
Sbjct:   466 QVEEQYKQIN 475

GO:0000347 "THO complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
pfam11957	494	pfam11957, efThoc1, THO complex subunit 1 transcri	1e-33

>gnl|CDD|221339 pfam11957, efThoc1, THO complex subunit 1 transcription elongation factor

 Score =  122 bits (307), Expect = 1e-33
 Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 13/145 (8%)

Query: 1   MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKA 60
            K+ +K  +++V+K L+   PKGK F   +EH+L RE+NWV WK +GCP FEK     K 
Sbjct: 289 DKKWIKFTKKKVEKRLKEFYPKGKKFYRMVEHLLSREENWVRWKNEGCPSFEKPHTVDKI 348

Query: 61  VQDGPK---------KRRPRWRLGNKELSQLWKWADQN-PNALTDPQRVRTPAITEYWKP 110
                +         KR    ++GNK L+ LW+    +  + L D +R R P +  Y   
Sbjct: 349 SVPEAEEAFKKRGFPKRLLGIKMGNKNLNFLWEKKIDSGLDRLKDEERYRIPPLEVYLDG 408

Query: 111 LADD---MDPSAGIEAEYHHKNSRV 132
           +A+D   +DP+   E E   +N  V
Sbjct: 409 IAEDKFEIDPANTDEKEEAAENKIV 433

The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1. The THO complex is a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences. The THO complex is also part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm. Length = 494

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
KOG2491	674	consensus Nuclear matrix protein [Nuclear structur	100.0
PF11957	491	efThoc1: THO complex subunit 1 transcription elong	100.0

>KOG2491 consensus Nuclear matrix protein [Nuclear structure]

Probab=100.00  E-value=2.5e-45  Score=316.64  Aligned_cols=134  Identities=45%  Similarity=0.753  Sum_probs=124.1

Q ss_pred             hhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhchHHhHhcCCCCcccccchhhhhccCCCCCC--------CCCC
Q 032647            2 KEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDGPKKRR--------PRWR   73 (136)
Q Consensus         2 ~~~i~~~~~~v~~lL~~t~p~G~~F~~~V~~IL~RE~nWv~WK~egCp~fek~~~~~~~~~~~~~krr--------~~~~   73 (136)
                      .+.|++|+++||+||..|||+|..|.++|+|||.||+||+.|||+|||+|+++|...+.+....+|||        .++.
T Consensus       352 a~~l~e~e~~vYklL~~Tpp~G~~f~r~v~hIl~rE~nWn~WKn~GCp~feK~p~~Dk~p~~~~kkr~~~l~~~p~~r~~  431 (674)
T KOG2491|consen  352 ALWLKECEKRVYKLLEETPPDGKRFSRTVEHILNREENWNSWKNEGCPSFEKEPTSDKKPTRIIKKRRAFLGKGPTKRFL  431 (674)
T ss_pred             HHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCccccccchhhhhccccccCCccccee
Confidence            46899999999999999999999999999999999999999999999999998886554433445555        3678


Q ss_pred             CCChhHHhHHhhCCCCCccCCccccccCCCHHHhhhhhhhcCCCCCCccccccccCCcCccc
Q 032647           74 LGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAGIEAEYHHKNSRVSFG  135 (136)
Q Consensus        74 ~G~~eLt~Lwn~~~dnl~~lk~~~r~~~Psl~~f~~~~~e~~DPe~~ieeeyk~~nd~~~~~  135 (136)
                      |||++||+|||++||||+|||+..|+++|+|++|++..+++||||+|||+|||+.||.+|||
T Consensus       432 lGN~eLtrLW~~apdNl~acKseqR~~iP~le~fl~~~~ek~Dpe~~vedeyh~~n~s~~~W  493 (674)
T KOG2491|consen  432 LGNEELTRLWNLAPDNLEACKSEQRERIPTLEDFLEEPAEKMDPENMVEDEYHAQNNSAYGW  493 (674)
T ss_pred             cCCHHHHHHHHhCCccHHHHhHHHhhcCCCHHHHhhchHhhcCHHHhhHHHHHHhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998

>PF11957 efThoc1: THO complex subunit 1 transcription elongation factor; InterPro: IPR021861 The THO complex is a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences

Probab=100.00  E-value=6.7e-36  Score=257.62  Aligned_cols=132  Identities=44%  Similarity=0.809  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhchHHhHhcCCCCcccccchhhhhcc---CCCCC-----CCCCCC
Q 032647            3 EEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQD---GPKKR-----RPRWRL   74 (136)
Q Consensus         3 ~~i~~~~~~v~~lL~~t~p~G~~F~~~V~~IL~RE~nWv~WK~egCp~fek~~~~~~~~~~---~~~kr-----r~~~~~   74 (136)
                      .-|++++.+|+++|++|+|+|++|++||++||+||+||++||++|||+|+++ ++......   ..+|+     ..+++|
T Consensus       291 ~wi~~~~~~v~~~L~~~~p~G~~F~~~v~~iL~rE~nW~~WK~~gCp~fe~~-~~~~~~~~~~~~~~K~~~~~~~~~~~m  369 (491)
T PF11957_consen  291 KWIKETKKRVYKLLKETPPDGPQFARMVEHILEREKNWVRWKNEGCPPFEKP-VSPESVPEAKESFKKRGFPKRPRKIKM  369 (491)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCCcccc-cCccccccccchhhhhccccccccCCC
Confidence            4589999999999999999999999999999999999999999999999999 54432211   12222     234899


Q ss_pred             CChhHHhHHhhCCCC-CccCCccccccCCCHHHhhhhhhh---cCCCCCCccccccccCCcCccc
Q 032647           75 GNKELSQLWKWADQN-PNALTDPQRVRTPAITEYWKPLAD---DMDPSAGIEAEYHHKNSRVSFG  135 (136)
Q Consensus        75 G~~eLt~Lwn~~~dn-l~~lk~~~r~~~Psl~~f~~~~~e---~~DPe~~ieeeyk~~nd~~~~~  135 (136)
                      ||++|++|||.+++| |++|+++.|+++|++++|++++++   +|||++++|++|+++|+.+|+|
T Consensus       370 Gn~~Ls~LW~~~~~~gL~~lk~~~r~~~p~le~f~~~~~~~~~~~d~~~~~e~e~~~~~~~~~~W  434 (491)
T PF11957_consen  370 GNPELSRLWNLKPDNGLEALKDPERYFLPSLESFFEEIIEDKFEMDPENQIEKEYKPENKAVKQW  434 (491)
T ss_pred             CChhHHHHhCCCCcchHHHHhcccccCCCCHHHHHHHHHHhHHhcCcccChhHHHHHhcchhhHH
Confidence            999999999999998 999999999999999999999999   9999999999999999999998

The THO complex is also part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00