Citrus Sinensis ID: 032699

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MRRHSTMSEERLIRREPKERRRIIMMDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSVVAGISEVLLLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLDK
Secondary Structure (PSIPRED)
cccccccccHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcHcccccHHHHHHHHHHHHHHHHccHHHHHHHcEEEEEEccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrrhstmseerlIRREPKERRRIIMMDPVIWHKIAAVSGVAalglgtygahgfkpqnpsfkeVWQTASLYHLVHTAALVaapitknpniVSVVAGISEVLLLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLDK
Flexible Loop (DISEMBL)
mrrhstmseerlirrepkerrriiMMDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSVVAGISEVLLLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLDK
Low Complexity Region (SEG)
MRRHSTMSeerlirrepkerrriiMMDPVIWHKIaavsgvaalglgTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSVVAGISEVLLLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLDK
Disordered region (IsUnstruct)
*********************RIIMMDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSVVAGISEVLLLFIDSTYISQNSVLCWLIHSDEIISFMCEYVL**
Disordered Region (DISOPRED)
****************************VIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSVVAGISEVLLLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLDK
Disordered Region (DISEMBL)
***********LIRREPKERRRIIMMDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSVVAGISEVLLLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLDK
Disordered Region (DISPRO)
*********************RIIMMDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSVVAGISEVLLLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLDK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRRHSTMSEERLIRREPKERRRIIMMDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSVVAGISEVLLLFIDSTYISQNSVLCWLIHSDEIISFMCEYVLDK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
A4K526	114	Transmembrane protein 256	N/A	no	0.570	0.675	0.333	1e-07
Q568J8	114	Transmembrane protein 256	yes	no	0.459	0.543	0.359	1e-05
Q2KI29	113	Transmembrane protein 256	yes	no	0.466	0.557	0.359	1e-05
Q8N2U0	113	Transmembrane protein 256	yes	no	0.607	0.725	0.317	3e-05
Q5F285	113	Transmembrane protein 256	yes	no	0.562	0.672	0.320	3e-05
Q9P7G8	118	UPF0382 membrane protein	yes	no	0.370	0.423	0.396	0.0006

>sp|A4K526|TM256_BUFGR Transmembrane protein 256 homolog OS=Bufo gargarizans PE=3 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 30  IWHKIAAVSGVAALGLGTYGAHGFK--PQNPSFKEVWQTASLYHLVHTAALVAAPITKNP 87
           +W ++ AVSG  A+  G YGAHGF+   ++   KE+++T + YH +H+ AL+A P  + P
Sbjct: 6   VWGRLGAVSGALAVTAGAYGAHGFRRSDRDEYLKELFETGNRYHFLHSLALLAVPHCRRP 65

Query: 88  NIVSVVAGISEVLLLFIDSTY 108
            +   +  ++  ++LF  + Y
Sbjct: 66  LLAGSL--LTSGIVLFSGTFY 84

Bufo bufo gargarizans (taxid: 30331)

>sp|Q568J8|TM256_DANRE Transmembrane protein 256 OS=Danio rerio GN=tmem256 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 32 HKIAAVSGVAALGLGTYGAHGFKPQNPS--FKEVWQTASLYHLVHTAALVAAPITKNPNI 89
           ++A +SG  A+  G YGAHGF+    S   +E++ TA+ YH  H+ AL+ A   + P +
Sbjct: 8  QRVAGISGALAVAAGAYGAHGFRRSEASDYQRELFDTANKYHFYHSLALLGAARCRKPAL 67

Query: 90 VSVV 93
            V+
Sbjct: 68 AGVI 71

Danio rerio (taxid: 7955)

>sp|Q2KI29|TM256_BOVIN Transmembrane protein 256 OS=Bos taurus GN=TMEM256 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 25 MMDP-VIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPI 83
          M  P   + ++ A+SG  ALGL +YGAHG +  +   KE++   + +H +H+ AL+A P+
Sbjct: 1  MAGPGAAFRRLGALSGAGALGLASYGAHGAQFPDAYGKELFDKTNKHHFLHSLALLAVPL 60

Query: 84 TKNP 87
           + P
Sbjct: 61 CRKP 64

Bos taurus (taxid: 9913)

>sp|Q8N2U0|TM256_HUMAN Transmembrane protein 256 OS=Homo sapiens GN=TMEM256 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 25  MMDPVI-WHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPI 83
           M  P   + ++ A+SG AALG  +YGAHG +  +   KE++  A+ +H +H+ AL+  P 
Sbjct: 1   MAGPAAAFRRLGALSGAAALGFASYGAHGAQFPDAYGKELFDKANKHHFLHSLALLGVPH 60

Query: 84  TKNPNIVSVVAGISEVLLLFIDSTY 108
            + P    ++  ++    LF  S Y
Sbjct: 61  CRKPLWAGLL--LASGTTLFCTSFY 83

Homo sapiens (taxid: 9606)

>sp|Q5F285|TM256_MOUSE Transmembrane protein 256 OS=Mus musculus GN=Tmem256 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 31  WHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIV 90
           + ++ A+SG  ALGL +YGAHG +  +   KE++  A+ +H +H+ AL+  P  + P   
Sbjct: 8   FRRLGALSGAGALGLASYGAHGAQFPDAYGKELFDKANKHHFLHSLALLGVPSCRKPVWA 67

Query: 91  SVVAGISEVLLLFIDSTY 108
            ++  ++    LF  S Y
Sbjct: 68  GLL--LASGTTLFCTSFY 83

Mus musculus (taxid: 10090)

>sp|Q9P7G8|YLKC_SCHPO UPF0382 membrane protein C1782.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1782.12c PE=3 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 30 IWHKIAAVSGVAALGLGTYGAHGFKP--QNPSFKEVWQTASLYHLVHTAALVA 80
          IW+ +AA++G+ ++GLG YG+HG +   Q+P   + W TA  Y + H+ A +A
Sbjct: 3  IWN-VAALTGLLSVGLGAYGSHGLQKRVQDPHLLKSWSTACTYLMFHSLATMA 54

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
242038113	138	hypothetical protein SORBIDRAFT_01g00793	0.770	0.753	0.549	2e-28
449453600	111	PREDICTED: UPF0451 protein C17orf61 homo	0.6	0.729	0.686	2e-26
357115425	117	PREDICTED: UPF0451 protein C17orf61 homo	0.637	0.735	0.659	2e-26
357493213	111	hypothetical protein MTR_5g085420 [Medic	0.525	0.639	0.767	3e-26
224129146	111	predicted protein [Populus trichocarpa]	0.6	0.729	0.698	9e-26
7963702	108	unknown, partial [Agropyron cristatum]	0.644	0.805	0.606	2e-25
7963659	108	unknown [Leymus cinereus]	0.644	0.805	0.606	2e-25
351725601	111	uncharacterized protein LOC100527017 [Gl	0.525	0.639	0.767	2e-25
297831576	128	hypothetical protein ARALYDRAFT_899300 [	0.585	0.617	0.702	3e-25
18395895	128	uncharacterized protein [Arabidopsis tha	0.585	0.617	0.690	6e-25

>gi|242038113|ref|XP_002466451.1| hypothetical protein SORBIDRAFT_01g007930 [Sorghum bicolor] gi|241920305|gb|EER93449.1| hypothetical protein SORBIDRAFT_01g007930 [Sorghum bicolor]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 86/111 (77%), Gaps = 7/111 (6%)

Query: 1   MRRHSTMSEERLIRREPKERRRIIM-MDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPS 59
           +++ + ++ +R  +R  KE+R+++  MDP++WHK+AAVSG+AALGLGTYGAH F+P+NP+
Sbjct: 2   LKQTAVVASQRRPKRRTKEKRKMVAPMDPMLWHKVAAVSGIAALGLGTYGAHMFRPKNPA 61

Query: 60  FKEVWQTASLYHLVHTAALVAAPITKNPNIVS--VVAGISEVLLLFIDSTY 108
           +KEVW TASLYHLVHTAAL+ APITK PN+    + AGI    +LF  + Y
Sbjct: 62  YKEVWHTASLYHLVHTAALLGAPITKRPNVFGGLLTAGI----VLFSGTCY 108

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453600|ref|XP_004144544.1| PREDICTED: UPF0451 protein C17orf61 homolog [Cucumis sativus] gi|449517667|ref|XP_004165866.1| PREDICTED: UPF0451 protein C17orf61 homolog [Cucumis sativus]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 70/83 (84%), Gaps = 2/83 (2%)

Query: 26  MDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITK 85
           M+P+ WHK+AA+SGVAALGLGTYGAHGFKP+NP++KEVWQTASLYHLVHTAAL+AAP TK
Sbjct: 1   MNPLYWHKVAAISGVAALGLGTYGAHGFKPKNPAYKEVWQTASLYHLVHTAALLAAPSTK 60

Query: 86  NPNIVSVVAGISEVLLLFIDSTY 108
           NPNI   +  ++  +L F  + Y
Sbjct: 61  NPNIFGGL--LTAGILAFSGTCY 81

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357115425|ref|XP_003559489.1| PREDICTED: UPF0451 protein C17orf61 homolog [Brachypodium distachyon]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 71/88 (80%), Gaps = 2/88 (2%)

Query: 21  RRIIMMDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVA 80
           R +I  DP++WHK+AAVSGVAALGLGTYGAH F+PQNP +KE+WQTASLYHLVHTAALV 
Sbjct: 2   RMVIPTDPMLWHKVAAVSGVAALGLGTYGAHMFRPQNPRYKEIWQTASLYHLVHTAALVG 61

Query: 81  APITKNPNIVSVVAGISEVLLLFIDSTY 108
           APITK PNI   +  ++  ++LF  + Y
Sbjct: 62  APITKRPNIFGGL--LTTGIVLFSGTCY 87

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493213|ref|XP_003616895.1| hypothetical protein MTR_5g085420 [Medicago truncatula] gi|355518230|gb|AES99853.1| hypothetical protein MTR_5g085420 [Medicago truncatula] gi|388518471|gb|AFK47297.1| unknown [Medicago truncatula]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 66/73 (90%), Gaps = 2/73 (2%)

Query: 26 MDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITK 85
          M+P+IWHK+AA+SGVAALGLGTYGAH FKPQNP++K+VW TASLYHLVHTAALV+APITK
Sbjct: 1  MNPLIWHKVAAISGVAALGLGTYGAHAFKPQNPTYKDVWHTASLYHLVHTAALVSAPITK 60

Query: 86 NPNIVS--VVAGI 96
          NPN+    + AGI
Sbjct: 61 NPNVFGGLLTAGI 73

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129146|ref|XP_002320512.1| predicted protein [Populus trichocarpa] gi|222861285|gb|EEE98827.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (304), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 70/83 (84%), Gaps = 2/83 (2%)

Query: 26  MDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITK 85
           MDP +WH+IAAVSGVAALGLGTYGAH FKP+NP++KEVWQTASLYHLVHTAAL+AAPITK
Sbjct: 1   MDPSMWHRIAAVSGVAALGLGTYGAHVFKPENPTYKEVWQTASLYHLVHTAALLAAPITK 60

Query: 86  NPNIVSVVAGISEVLLLFIDSTY 108
           +PNI   +  ++  +L F  + Y
Sbjct: 61  HPNIFGGL--LTTGILAFSGTCY 81

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7963702|gb|AAF71315.1| unknown, partial [Agropyron cristatum]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 72/89 (80%), Gaps = 2/89 (2%)

Query: 20  RRRIIMMDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALV 79
           ++ ++  DP++WHK+AAVSGVAALGLGTYGAH F+PQNP +KE+WQTASLYHLVHTAAL+
Sbjct: 1   KKMVMPTDPMLWHKVAAVSGVAALGLGTYGAHMFRPQNPRYKEIWQTASLYHLVHTAALL 60

Query: 80  AAPITKNPNIVSVVAGISEVLLLFIDSTY 108
            AP+TK PNI   +  ++  ++LF  + Y
Sbjct: 61  GAPMTKRPNIFGGL--LTTGIVLFSGTCY 87

Source: Agropyron cristatum

Species: Agropyron cristatum

Genus: Agropyron

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7963659|gb|AAF71304.1| unknown [Leymus cinereus]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 72/89 (80%), Gaps = 2/89 (2%)

Query: 20  RRRIIMMDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALV 79
           ++ ++  DP++WHK+AAVSGVAALGLGTYGAH F+PQNP +KE+WQTASLYHLVHTAAL+
Sbjct: 1   KKMVMPTDPMLWHKVAAVSGVAALGLGTYGAHMFRPQNPRYKEIWQTASLYHLVHTAALL 60

Query: 80  AAPITKNPNIVSVVAGISEVLLLFIDSTY 108
            AP+TK PNI   +  ++  ++LF  + Y
Sbjct: 61  GAPMTKRPNIFGGL--LTTGIVLFSGTCY 87

Source: Leymus cinereus

Species: Leymus cinereus

Genus: Leymus

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725601|ref|NP_001237354.1| uncharacterized protein LOC100527017 [Glycine max] gi|255631372|gb|ACU16053.1| unknown [Glycine max]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 65/73 (89%), Gaps = 2/73 (2%)

Query: 26 MDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITK 85
          MDP +WHK+AA+SGVAALGLGTYGAH FKPQNP++K+VW TASLYHLVHTAALVAAPITK
Sbjct: 1  MDPQVWHKVAAISGVAALGLGTYGAHVFKPQNPAYKDVWHTASLYHLVHTAALVAAPITK 60

Query: 86 NPNIVS--VVAGI 96
          +PN+    + AGI
Sbjct: 61 HPNVFGGLLTAGI 73

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831576|ref|XP_002883670.1| hypothetical protein ARALYDRAFT_899300 [Arabidopsis lyrata subsp. lyrata] gi|297329510|gb|EFH59929.1| hypothetical protein ARALYDRAFT_899300 [Arabidopsis lyrata subsp. lyrata]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 69/84 (82%), Gaps = 5/84 (5%)

Query: 15 REPKERRRIIMMDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVH 74
          R+ + RR    MDP IWHK+AA+SG+AALGLGTYGAH FKP+NPS+K+VWQTASLYHLVH
Sbjct: 10 RDIRGRRS---MDPRIWHKVAAISGMAALGLGTYGAHVFKPENPSYKQVWQTASLYHLVH 66

Query: 75 TAALVAAPITKNPNIVS--VVAGI 96
          TAALV+AP TK PNI    + AGI
Sbjct: 67 TAALVSAPSTKYPNIFGGLLTAGI 90

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395895|ref|NP_565317.1| uncharacterized protein [Arabidopsis thaliana] gi|20197981|gb|AAM15336.1| expressed protein [Arabidopsis thaliana] gi|20198199|gb|AAD25581.2| expressed protein [Arabidopsis thaliana] gi|330250789|gb|AEC05883.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 69/84 (82%), Gaps = 5/84 (5%)

Query: 15 REPKERRRIIMMDPVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVH 74
          R+ + RR    MDP +WHK+AA+SG+AALGLGTYGAH FKP+NPS+K+VWQTASLYHLVH
Sbjct: 10 RDIRGRRS---MDPRMWHKVAAISGMAALGLGTYGAHVFKPENPSYKQVWQTASLYHLVH 66

Query: 75 TAALVAAPITKNPNIVS--VVAGI 96
          TAALV+AP TK PNI    + AGI
Sbjct: 67 TAALVSAPSTKYPNIFGGLLTAGI 90

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TAIR|locus:2045019	128	AT2G04900 "AT2G04900" [Arabido	0.525	0.554	0.616	5.7e-20
DICTYBASE|DDB_G0269766	120	DDB_G0269766 "DUF423 family pr	0.570	0.641	0.320	1.3e-06
WB|WBGene00013720	156	Y106G6H.8 [Caenorhabditis eleg	0.511	0.442	0.320	6.3e-05
ZFIN|ZDB-GENE-050417-92	114	tmem256 "transmembrane protein	0.340	0.403	0.375	0.00027

TAIR|locus:2045019 AT2G04900 "AT2G04900" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 45/73 (61%), Positives = 52/73 (71%)

Query:    26 MDPVIWHKIXXXXXXXXXXXXTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITK 85
             MDP +WHK+            TYGAH FKP+NPS+K+VWQTASLYHLVHTAALV+AP TK
Sbjct:    18 MDPRMWHKVAAISGMAALGLGTYGAHVFKPENPSYKQVWQTASLYHLVHTAALVSAPSTK 77

Query:    86 NPNIVS--VVAGI 96
              PNI    + AGI
Sbjct:    78 YPNIFGGLLTAGI 90

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

DICTYBASE|DDB_G0269766 DDB_G0269766 "DUF423 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 26/81 (32%), Positives = 38/81 (46%)

Query:    30 IWHKIXXXXXXXXXXXXTYGAHGFKPQ--NPSFKEVWQTASLYHLVHTAALVAAPITKNP 87
             +W KI             YG HG K +  + + +++W+TA  YHL H+ AL   P +   
Sbjct:     4 LWWKIGGISACSAIISGAYGGHGLKKKVTDVARQDIWKTAQQYHLYHSFALFLVPFSTQQ 63

Query:    88 NIVSVVAGISEVLLLFIDSTY 108
             NIV  +      +LLF  S Y
Sbjct:    64 NIVGPM--FLTGILLFSGSLY 82

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00013720 Y106G6H.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 25/78 (32%), Positives = 39/78 (50%)

Query:    26 MDPVIWHKIXXXXXXXXXXXXTYGAHGFKPQNPSFKE----VWQTASLYHLVHTAALVAA 81
             M P+I  ++             YG+H  +  NPS  E     + TAS YHL+H+ AL+A+
Sbjct:    45 MSPII--RLAGLSGAVAISLGAYGSHVLR-DNPSIDERRRTAFDTASRYHLIHSLALLAS 101

Query:    82 PITKNPNIVS--VVAGIS 97
             P  + P + +    AGI+
Sbjct:   102 PAARFPLVTAGLFTAGIT 119

GO:0016021 "integral to membrane" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

ZFIN|ZDB-GENE-050417-92 tmem256 "transmembrane protein 256" [Danio rerio (taxid:7955)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query:    48 YGAHGFKPQNPSF--KEVWQTASLYHLVHTAALVAAPITKNPNIVSVV 93
             YGAHGF+    S   +E++ TA+ YH  H+ AL+ A   + P +  V+
Sbjct:    24 YGAHGFRRSEASDYQRELFDTANKYHFYHSLALLGAARCRKPALAGVI 71


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.134   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      135       107   0.00091  102 3  11 22  0.37    30
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  135 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.17u 0.14s 10.31t   Elapsed:  00:00:01
  Total cpu time:  10.17u 0.14s 10.31t   Elapsed:  00:00:01
  Start:  Thu May  9 22:28:51 2013   End:  Thu May  9 22:28:52 2013

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	135
pfam04241	89	pfam04241, DUF423, Protein of unknown function (DU	7e-10
COG2363	124	COG2363, COG2363, Uncharacterized small membrane p	9e-06

>gnl|CDD|217983 pfam04241, DUF423, Protein of unknown function (DUF423)

 Score = 51.8 bits (125), Expect = 7e-10
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 44 GLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPI 83
           LG +GAHG K + +P   E ++TA  Y L H  AL+A  +
Sbjct: 1  ALGAFGAHGLKKKLSPEQLEAFETAVQYQLYHALALLAVAL 41

This family of proteins with unknown function is a possible integral membrane protein from Caenorhabditis elegans. This family of proteins has GO references indicating the protein is involved in nematode larval development and is a positive regulator of growth rate. Length = 89

>gnl|CDD|225238 COG2363, COG2363, Uncharacterized small membrane protein [Function unknown]

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 34  IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVA-APITKNPNIVS 91
           +AA+SG  A+ LG +GAHG     +        T + Y + H  AL+A   +        
Sbjct: 8   LAALSGFLAVALGAFGAHGLAKALHDGELAWLGTGAQYQMFHALALLALGLLALRLRSTV 67

Query: 92  VVAGISEVL--LLFIDSTYI 109
             AG   +L  +LF  S Y 
Sbjct: 68  RWAGWLLLLGIVLFSGSLYA 87

Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
PRK10873	131	hypothetical protein; Provisional	99.95
KOG3472	112	consensus Predicted small membrane protein [Functi	99.95
COG2363	124	Uncharacterized small membrane protein [Function u	99.92
PF04241	89	DUF423: Protein of unknown function (DUF423); Inte	99.91

>PRK10873 hypothetical protein; Provisional

Probab=99.95  E-value=1.9e-28  Score=184.27  Aligned_cols=98  Identities=26%  Similarity=0.250  Sum_probs=84.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhccCCCC-CChhHHHHHHHHHHHHHHHHHHHHHhhc--cCCc----hhhHHH--HHh
Q 032699           26 MDPVIWHKIAAVSGVAALGLGTYGAHGFKP-QNPSFKEVWQTASLYHLVHTAALVAAPI--TKNP----NIVSVV--AGI   96 (135)
Q Consensus        26 m~~r~~l~lgal~Ga~aValGAfGAHgL~~-~~~~~~~~~~TA~~Yq~~HalALl~l~~--~~~~----~~~~~l--~G~   96 (135)
                      |.+|.++++++++|+++|++||||||++|+ .+|+++++||||+|||++|++||++++.  .+.+    ++++++  +|+
T Consensus         1 m~~~~~l~la~l~g~~aValGA~gAH~l~~~l~~~~~~~~~ta~~Yq~~HalaLl~~~~~~~~~~~~~~~~a~~l~~~G~   80 (131)
T PRK10873          1 MTSRFMLIFAAISGFIYVALGAFGAHVLSKTLGAVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGT   80 (131)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            445789999999999999999999999999 6999999999999999999999999874  2222    234433  666


Q ss_pred             hhhhhhhhhhHHHHHhhCcccchhhhHHHHH
Q 032699           97 SEVLLLFIDSTYISQNSVLCWLIHSDEIISF  127 (135)
Q Consensus        97 ~~givLFSGSLY~~altg~~~l~~~~~~~~~  127 (135)
                          ++||||+|++++++++++++.+|++-.
T Consensus        81 ----~lFsGSlY~~al~~~~~l~~itPiGG~  107 (131)
T PRK10873         81 ----VLFSGSLYCLALSHLRLWAYITPVGGV  107 (131)
T ss_pred             ----HHHhHHHHHHHHcCCcccccCccHHHH
Confidence                999999999999999999999999864

>KOG3472 consensus Predicted small membrane protein [Function unknown]

Probab=99.95  E-value=2.2e-28  Score=178.76  Aligned_cols=97  Identities=38%  Similarity=0.600  Sum_probs=92.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhccCCCC-CChhHHHHHHHHHHHHHHHHHHHHHhhccCCchhhHHH--HHhhhhhhhhh
Q 032699           28 PVIWHKIAAVSGVAALGLGTYGAHGFKP-QNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIVSVV--AGISEVLLLFI  104 (135)
Q Consensus        28 ~r~~l~lgal~Ga~aValGAfGAHgL~~-~~~~~~~~~~TA~~Yq~~HalALl~l~~~~~~~~~~~l--~G~~~givLFS  104 (135)
                      .+.|+.++|++|+.++.+||||+|++|+ .|+++++.||||++|||+|++|+++++..++|+|.+.+  +|+    ++||
T Consensus         3 ~~~~~rlaalsGa~AlglgaYgahvlk~~pd~~~~~~~dtA~~yh~~HSlAlma~P~~~~p~~tg~Ll~tG~----~lFs   78 (112)
T KOG3472|consen    3 PMTFIRLAALSGAAALGLGAYGAHVLKDVPDPKELKSWDTANRYHFLHSLALMAVPVARKPLWTGGLLITGI----TLFS   78 (112)
T ss_pred             chHHHHHHHHhhHHHHhhhhhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHcCccccCcchhhhHHHHHH----HHhc
Confidence            3579999999999999999999999999 79999999999999999999999999999999998775  888    9999


Q ss_pred             hhHHHHHhhCcccchhhhHHHHHH
Q 032699          105 DSTYISQNSVLCWLIHSDEIISFM  128 (135)
Q Consensus       105 GSLY~~altg~~~l~~~~~~~~~~  128 (135)
                      |++|++++++++.++.++||+-|.
T Consensus        79 g~~Y~~aL~g~~~~~~lapiGG~~  102 (112)
T KOG3472|consen   79 GTCYYLALSGDRILQPLAPIGGFV  102 (112)
T ss_pred             chhheeeecCCcccccccccccHH
Confidence            999999999999999999999874

>COG2363 Uncharacterized small membrane protein [Function unknown]

Probab=99.92  E-value=8.5e-26  Score=169.01  Aligned_cols=94  Identities=29%  Similarity=0.329  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCC-CChhHHHHHHHHHHHHHHHHHHHHHhhcc--CCc---hhhHHH--HHhhhhh
Q 032699           29 VIWHKIAAVSGVAALGLGTYGAHGFKP-QNPSFKEVWQTASLYHLVHTAALVAAPIT--KNP---NIVSVV--AGISEVL  100 (135)
Q Consensus        29 r~~l~lgal~Ga~aValGAfGAHgL~~-~~~~~~~~~~TA~~Yq~~HalALl~l~~~--~~~---~~~~~l--~G~~~gi  100 (135)
                      |.++.+++++|+++|++||||+|++++ .++++.++|+|++||||+|++|++++++.  +..   ++++++  +|+    
T Consensus         3 ~~~~~l~al~g~l~v~lGAfgah~l~~~~~~~~l~~~~Tg~~yqm~Halall~l~l~~~~~~~~~~~ag~ll~~Gi----   78 (124)
T COG2363           3 KTFLILAALSGFLAVALGAFGAHGLAKALHDGELAWLGTGAQYQMFHALALLALGLLALRLRSTVRWAGWLLLLGI----   78 (124)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----
Confidence            568999999999999999999999998 78899999999999999999999999863  222   445443  677    


Q ss_pred             hhhhhhHHHHHhhCcccchhhhHHHH
Q 032699          101 LLFIDSTYISQNSVLCWLIHSDEIIS  126 (135)
Q Consensus       101 vLFSGSLY~~altg~~~l~~~~~~~~  126 (135)
                      ++||||||.+++++.|++++.+||+-
T Consensus        79 ~LFSGsLy~l~lsg~rllg~iTPiGG  104 (124)
T COG2363          79 VLFSGSLYALALSGLRLLGAITPIGG  104 (124)
T ss_pred             HHHcchHHHHHHcCcchhhccCCcch
Confidence            99999999999999999999999984

>PF04241 DUF423: Protein of unknown function (DUF423); InterPro: IPR006696 This is a potential integral membrane protein with no known function

Probab=99.91  E-value=5.3e-25  Score=155.43  Aligned_cols=78  Identities=32%  Similarity=0.398  Sum_probs=68.6

Q ss_pred             HHHHhhccCCCC-CChhHHHHHHHHHHHHHHHHHHHHHhhc------cCCchhhHHH--HHhhhhhhhhhhhHHHHHhhC
Q 032699           44 GLGTYGAHGFKP-QNPSFKEVWQTASLYHLVHTAALVAAPI------TKNPNIVSVV--AGISEVLLLFIDSTYISQNSV  114 (135)
Q Consensus        44 alGAfGAHgL~~-~~~~~~~~~~TA~~Yq~~HalALl~l~~------~~~~~~~~~l--~G~~~givLFSGSLY~~altg  114 (135)
                      ++||||||++|+ .+++++++|+||+|||++|++|++++++      .+.+++++++  +|+    ++||||||++++++
T Consensus         1 alGA~gaH~l~~~~~~~~~~~~~tA~~y~~~Halall~~~~~~~~~~~~~~~~a~~l~~~G~----~lFsGslY~~al~~   76 (89)
T PF04241_consen    1 ALGAFGAHGLKDQLSPEQLEWFQTAVQYQFIHALALLALGLLAQRRSSRLLRLAGWLFLLGT----LLFSGSLYYLALTG   76 (89)
T ss_pred             ChHHHHhccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH----HHHhHHHHHHHHcC
Confidence            489999999999 7999999999999999999999999984      2334455443  777    99999999999999


Q ss_pred             cccchhhhHHH
Q 032699          115 LCWLIHSDEII  125 (135)
Q Consensus       115 ~~~l~~~~~~~  125 (135)
                      ++++++.+||+
T Consensus        77 ~~~~~~itPiG   87 (89)
T PF04241_consen   77 PKSLGPITPIG   87 (89)
T ss_pred             CcccccCCCCC
Confidence            99999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00