Citrus Sinensis ID: 032751

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVMDPPHWTQLSFALPA
Secondary Structure (PSIPRED)
cccccccEEcccccccccccccccccccEEEccccccccEEEEccccccccccccccccEEEEEEEcccHHHHHHHHHcccccEEcccccccccccccccccccHHHHHccccccEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEcccccccHHcccccccEEEccccccccHHEEcccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHEcccccHHHHcccccccccccEEEEccccccEEEEcccccccccccccc
Coil and Loop (DISEMBL)
makndepvvgvpfyvgqnpyqkgeippnailgdpmgipiqqtiyrdtpapfscvycgnsgvtqvrskpssaavvgcmmpfflgicflcpsmdclwhkyhycpscnekvanfekrdicavmdpphwtqlsfalpa
Flexible Loop (DISEMBL)
makndepvvgvPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVMDPPHWTQLSFALPA
Low Complexity Region (SEG)
MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVMDPPHWTQLSFALPA
Disordered region (IsUnstruct)
*******VVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVMDPPHWTQLSF****
Disordered Region (DISOPRED)
******P***VPFYVGQNPY*KGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVMDPPHWTQL*FAL**
Disordered Region (DISEMBL)
MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG**********AAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVMDPPHWTQLSFALPA
Disordered Region (DISPRO)
****DEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVMDPPHWTQLSF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVMDPPHWTQLSFALPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
224072502	134	predicted protein [Populus trichocarpa]	1.0	1.0	0.843	2e-61
224057816	134	predicted protein [Populus trichocarpa]	1.0	1.0	0.820	1e-60
449445586	134	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.813	2e-60
255543152	134	conserved hypothetical protein [Ricinus	1.0	1.0	0.798	2e-59
225425154	141	PREDICTED: uncharacterized protein LOC10	0.985	0.936	0.757	8e-55
18416986	134	uncharacterized protein [Arabidopsis tha	1.0	1.0	0.723	1e-52
297811439	134	hypothetical protein ARALYDRAFT_488134 [	1.0	1.0	0.716	4e-52
296088728	132	unnamed protein product [Vitis vinifera]	0.910	0.924	0.795	6e-52
351724689	138	uncharacterized protein LOC100305591 [Gl	0.985	0.956	0.720	4e-51
7529274	146	putative protein [Arabidopsis thaliana]	1.0	0.917	0.664	4e-50

>gi|224072502|ref|XP_002303762.1| predicted protein [Populus trichocarpa] gi|118482551|gb|ABK93196.1| unknown [Populus trichocarpa] gi|222841194|gb|EEE78741.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/134 (84%), Positives = 119/134 (88%)

Query: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60
           M + D+PVVGVP+Y GQNPYQ G IPPNAI+GDP GIPIQQT+YRDTPAPFSCVYCGNSG
Sbjct: 1   MGQQDQPVVGVPYYAGQNPYQAGAIPPNAIVGDPKGIPIQQTMYRDTPAPFSCVYCGNSG 60

Query: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120
           VT VRSKPS AAVVGCMMP  LG CFLCPSMDCLWHKYHYCPSC EKVA+FEK D CAVM
Sbjct: 61  VTFVRSKPSLAAVVGCMMPLMLGFCFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCAVM 120

Query: 121 DPPHWTQLSFALPA 134
           DPPHWTQ SFALPA
Sbjct: 121 DPPHWTQESFALPA 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057816|ref|XP_002299338.1| predicted protein [Populus trichocarpa] gi|222846596|gb|EEE84143.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 110/134 (82%), Positives = 119/134 (88%)

Query: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60
           M + DEPV+GVP+Y GQNPYQ G IPPNAI+GDP GIPIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MGQKDEPVIGVPYYAGQNPYQAGAIPPNAIVGDPRGIPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120
           VT VRSKPS AAVVGCMMP  +G CFLCPSMDCLWHK+HYCPSC EKVA+FEK D CAVM
Sbjct: 61  VTVVRSKPSLAAVVGCMMPLMVGFCFLCPSMDCLWHKHHYCPSCKEKVADFEKSDPCAVM 120

Query: 121 DPPHWTQLSFALPA 134
           DPPHWTQ SFALPA
Sbjct: 121 DPPHWTQESFALPA 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445586|ref|XP_004140553.1| PREDICTED: uncharacterized protein LOC101221688 [Cucumis sativus] gi|449531332|ref|XP_004172640.1| PREDICTED: uncharacterized LOC101221688 [Cucumis sativus]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/134 (81%), Positives = 119/134 (88%)

Query: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60
           M+KN EPVVGVP YVG NPYQ G+IPPNAI GDP G+PIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120
           +T +RSK SSAAVVGCMMPF LG+CFLCPSMDCLWHKYHYCPSC EKV +FEK D CAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQLSFALPA 134
           DPPHWTQ S+ALP 
Sbjct: 121 DPPHWTQPSYALPG 134

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543152|ref|XP_002512639.1| conserved hypothetical protein [Ricinus communis] gi|223548600|gb|EEF50091.1| conserved hypothetical protein [Ricinus communis]

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/134 (79%), Positives = 117/134 (87%)

Query: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60
           M + DEP +GVP+YVGQNPYQ G IPPNA+ GDP GIPIQQT+YRDTPAPF+CV+CGNSG
Sbjct: 1   MGQKDEPAIGVPYYVGQNPYQAGAIPPNAVFGDPKGIPIQQTMYRDTPAPFNCVFCGNSG 60

Query: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120
           +T VRSKPS AAVVGCMMPF LG CFLCPSMDCLWHKYHYCP+C EKVA+FEK D C VM
Sbjct: 61  LTLVRSKPSLAAVVGCMMPFMLGFCFLCPSMDCLWHKYHYCPNCKEKVADFEKSDPCLVM 120

Query: 121 DPPHWTQLSFALPA 134
           DPP WTQ SFALPA
Sbjct: 121 DPPQWTQQSFALPA 134

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425154|ref|XP_002263687.1| PREDICTED: uncharacterized protein LOC100242123 [Vitis vinifera] gi|147866224|emb|CAN79932.1| hypothetical protein VITISV_005113 [Vitis vinifera]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 103/136 (75%), Positives = 115/136 (84%), Gaps = 4/136 (2%)

Query: 3   KNDEPVVGVPF----YVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGN 58
           K +EPV+G+P+    +  QNPYQ G IPPNA +GDP G+PIQQTI+RDTPAPF+CVYCG+
Sbjct: 4   KEEEPVMGIPYPAVYHPNQNPYQAGVIPPNAFVGDPKGVPIQQTIFRDTPAPFNCVYCGS 63

Query: 59  SGVTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICA 118
           SGVT V+SKPS AAVVGCMMP  LGICFLCPSMDCLWHKYHYCPSC EKVA+FEK D C 
Sbjct: 64  SGVTTVKSKPSLAAVVGCMMPMMLGICFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCV 123

Query: 119 VMDPPHWTQLSFALPA 134
           VMDPP WTQ SFALPA
Sbjct: 124 VMDPPQWTQQSFALPA 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416986|ref|NP_568286.1| uncharacterized protein [Arabidopsis thaliana] gi|14334510|gb|AAK59452.1| unknown protein [Arabidopsis thaliana] gi|17104547|gb|AAL34162.1| unknown protein [Arabidopsis thaliana] gi|21593874|gb|AAM65841.1| unknown [Arabidopsis thaliana] gi|332004479|gb|AED91862.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 109/134 (81%)

Query: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60
           MAK    V+GVP+Y GQNPYQ G +PPNAI GDP+G PIQQTIYRDTPAPF+C+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120
           +T +RSKP  AAVV CMMPF LG CFLCPSMDCLW+K H+CP C  KVA+FEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPPHWTQLSFALPA 134
           DPP W Q SFALPA
Sbjct: 121 DPPQWKQPSFALPA 134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811439|ref|XP_002873603.1| hypothetical protein ARALYDRAFT_488134 [Arabidopsis lyrata subsp. lyrata] gi|297319440|gb|EFH49862.1| hypothetical protein ARALYDRAFT_488134 [Arabidopsis lyrata subsp. lyrata]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 96/134 (71%), Positives = 109/134 (81%)

Query: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60
           MAK    V+GVP+Y GQNPYQ G +PPNAI GDP+G PIQQTIYRDTPAPF+C+YCG++G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGDTG 60

Query: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120
           +T +RSKP  AAVV CMMPF LG CFLCPSMDCLW+K H+CP C  KVA+FEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPPHWTQLSFALPA 134
           DPP W Q SFALPA
Sbjct: 121 DPPQWKQPSFALPA 134

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088728|emb|CBI38178.3| unnamed protein product [Vitis vinifera]

 Score =  208 bits (530), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 97/122 (79%), Positives = 106/122 (86%)

Query: 13  FYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSGVTQVRSKPSSAA 72
           ++  QNPYQ G IPPNA +GDP G+PIQQTI+RDTPAPF+CVYCG+SGVT V+SKPS AA
Sbjct: 9   YHPNQNPYQAGVIPPNAFVGDPKGVPIQQTIFRDTPAPFNCVYCGSSGVTTVKSKPSLAA 68

Query: 73  VVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVMDPPHWTQLSFAL 132
           VVGCMMP  LGICFLCPSMDCLWHKYHYCPSC EKVA+FEK D C VMDPP WTQ SFAL
Sbjct: 69  VVGCMMPMMLGICFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCVVMDPPQWTQQSFAL 128

Query: 133 PA 134
           PA
Sbjct: 129 PA 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724689|ref|NP_001237578.1| uncharacterized protein LOC100305591 [Glycine max] gi|255626007|gb|ACU13348.1| unknown [Glycine max]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 98/136 (72%), Positives = 110/136 (80%), Gaps = 4/136 (2%)

Query: 1   MAKNDEPV-VGVP---FYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYC 56
           M K +E V VGVP   +Y G+N YQ+G IPPN + GDP GIPIQQTIYRDTPAPF+C YC
Sbjct: 1   MEKTEEKVAVGVPVQLYYGGENEYQRGMIPPNTVFGDPKGIPIQQTIYRDTPAPFNCPYC 60

Query: 57  GNSGVTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDI 116
           G++ +T VRSKPS AA VGC +P  LG+CFLCPSMDCLWHKYHYCP C EKVA+FEK D 
Sbjct: 61  GDTALTTVRSKPSLAAFVGCFVPMMLGVCFLCPSMDCLWHKYHYCPKCQEKVADFEKSDP 120

Query: 117 CAVMDPPHWTQLSFAL 132
           CAVMDPPHWTQ SFAL
Sbjct: 121 CAVMDPPHWTQESFAL 136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7529274|emb|CAB86626.1| putative protein [Arabidopsis thaliana]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 97/146 (66%), Positives = 109/146 (74%), Gaps = 12/146 (8%)

Query: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60
           MAK    V+GVP+Y GQNPYQ G +PPNAI GDP+G PIQQTIYRDTPAPF+C+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEK------------V 108
           +T +RSKP  AAVV CMMPF LG CFLCPSMDCLW+K H+CP C  K            V
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVLLYVFFMPATRV 120

Query: 109 ANFEKRDICAVMDPPHWTQLSFALPA 134
           A+FEK D C VMDPP W Q SFALPA
Sbjct: 121 ADFEKSDPCLVMDPPQWKQPSFALPA 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
TAIR|locus:2183891	134	GILP "AT5G13190" [Arabidopsis	1.0	1.0	0.723	2.9e-55
UNIPROTKB|F1NNL3	148	LITAF "Lipopolysaccharide-indu	0.731	0.662	0.285	2.1e-06
UNIPROTKB|Q8QGW7	148	LITAF "Lipopolysaccharide-indu	0.731	0.662	0.285	2.6e-06
MGI|MGI:1929512	161	Litaf "LPS-induced TN factor"	0.731	0.608	0.264	9e-06
RGD|69294	161	Litaf "lipopolysaccharide-indu	0.731	0.608	0.273	9e-06
UNIPROTKB|F1RL16	161	LOC100518302 "Uncharacterized	0.731	0.608	0.264	1.1e-05
UNIPROTKB|Q2KHV3	161	LITAF "Uncharacterized protein	0.731	0.608	0.264	1.9e-05
FB|FBgn0050269	144	CG30269 [Drosophila melanogast	0.514	0.479	0.276	0.00067

TAIR|locus:2183891 GILP "AT5G13190" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 97/134 (72%), Positives = 109/134 (81%)

Query:     1 MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60
             MAK    V+GVP+Y GQNPYQ G +PPNAI GDP+G PIQQTIYRDTPAPF+C+YCGN+G
Sbjct:     1 MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query:    61 VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120
             +T +RSKP  AAVV CMMPF LG CFLCPSMDCLW+K H+CP C  KVA+FEK D C VM
Sbjct:    61 LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query:   121 DPPHWTQLSFALPA 134
             DPP W Q SFALPA
Sbjct:   121 DPPQWKQPSFALPA 134

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0034051 "negative regulation of plant-type hypersensitive response" evidence=IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

UNIPROTKB|F1NNL3 LITAF "Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog" [Gallus gallus (taxid:9031)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 30/105 (28%), Positives = 48/105 (45%)

Query:    16 GQNPYQ-KGEIPPNAILGDPMGIPIQQTI--YRDTPAPFSCVYCGNSGVTQVRSKPSSAA 72
             G NP Q  G+  P +       + +QQ +  + D P   SC  C    VT++  +  +  
Sbjct:    43 GMNPPQYSGQPMPTSTSVTVQTVYVQQPVVLFYDRPVQMSCPSCNQMIVTRLCYESGALT 102

Query:    73 VVGCMMPFFLGI---CFLCP-SMDCLWHKYHYCPSCNEKVANFEK 113
              + C   F LG    C L P  +D L    H+CP+CN  V ++++
Sbjct:   103 WLSCGGLFLLGCIAGCCLIPFCVDALKDVEHFCPNCNAHVGSYKR 147

GO:0001817 "regulation of cytokine production" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0042347 "negative regulation of NF-kappaB import into nucleus" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0050699 "WW domain binding" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

UNIPROTKB|Q8QGW7 LITAF "Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog" [Gallus gallus (taxid:9031)]

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 30/105 (28%), Positives = 48/105 (45%)

Query:    16 GQNPYQ-KGEIPPNAILGDPMGIPIQQTI--YRDTPAPFSCVYCGNSGVTQVRSKPSSAA 72
             G NP Q  G+  P +       + +QQ +  + D P   SC  C    VT++  +  +  
Sbjct:    43 GMNPPQYSGQPMPTSTPVTVQTVYVQQPVVLFYDRPVQMSCPSCNQMIVTRLCYESGALT 102

Query:    73 VVGCMMPFFLGI---CFLCP-SMDCLWHKYHYCPSCNEKVANFEK 113
              + C   F LG    C L P  +D L    H+CP+CN  V ++++
Sbjct:   103 WLSCGGLFLLGCIAGCCLIPFCVDALKDVEHFCPNCNAHVGSYKR 147

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005125 "cytokine activity" evidence=NAS

MGI|MGI:1929512 Litaf "LPS-induced TN factor" [Mus musculus (taxid:10090)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 28/106 (26%), Positives = 45/106 (42%)

Query:    16 GQNP--YQKGEIP-PNAILGDPMGIPIQQTI-YRDTPAPFSCVYCGNSGVTQVRSKPSSA 71
             G NP  Y    +P PNA       + +QQ + + D P    C  C    VTQ+     + 
Sbjct:    55 GMNPPSYYTQPVPVPNANAIAVQTVYVQQPVSFYDRPVQMCCPSCSKMIVTQLSYNAGAL 114

Query:    72 AVVGC----MMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEK 113
               + C    ++    G CF+   +D L    HYCP+C   +  +++
Sbjct:   115 TWLSCGSLCLLGCVAGCCFIPFCVDALQDVDHYCPNCKALLGTYKR 160

GO:0001817 "regulation of cytokine production" evidence=IMP

GO:0004871 "signal transducer activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005764 "lysosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007165 "signal transduction" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IMP

GO:0042347 "negative regulation of NF-kappaB import into nucleus" evidence=IMP

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0050699 "WW domain binding" evidence=ISO

GO:0071222 "cellular response to lipopolysaccharide" evidence=IMP

RGD|69294 Litaf "lipopolysaccharide-induced TNF factor" [Rattus norvegicus (taxid:10116)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 29/106 (27%), Positives = 45/106 (42%)

Query:    16 GQNP--YQKGEIP-PNAILGDPMGIPIQQTI-YRDTPAPFSCVYCGNSGVTQVRSKPSSA 71
             G NP  Y    +P PNA       + +QQ I + D P    C  C    VTQ+     + 
Sbjct:    55 GMNPPSYYTQPVPVPNANAIAVQTVYVQQPISFYDRPIQMCCPSCNKMIVTQLSYNAGAL 114

Query:    72 AVVGC----MMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEK 113
               + C    ++    G CF+   +D L    HYCP+C   +  +++
Sbjct:   115 TWLSCGSLCLLGCVAGCCFIPFCVDALQDVDHYCPNCKALLGTYKR 160

GO:0001817 "regulation of cytokine production" evidence=IEA;ISO

GO:0004871 "signal transducer activity" evidence=ISO;ISS

GO:0005576 "extracellular region" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007165 "signal transduction" evidence=ISO

GO:0032496 "response to lipopolysaccharide" evidence=ISO

GO:0042347 "negative regulation of NF-kappaB import into nucleus" evidence=IEA;ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO;ISS

GO:0050699 "WW domain binding" evidence=ISO;ISS

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA;ISO

UNIPROTKB|F1RL16 LOC100518302 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 28/106 (26%), Positives = 45/106 (42%)

Query:    16 GQNP--YQKGEIP-PNAILGDPMGIPIQQTI-YRDTPAPFSCVYCGNSGVTQVRSKPSSA 71
             G NP  Y    +P PNA       + +QQ + + D P    C  C    VTQ+     + 
Sbjct:    55 GMNPPGYYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLSYNAGTL 114

Query:    72 AVVGC----MMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEK 113
               + C    ++    G CF+   +D L    HYCP+C   +  +++
Sbjct:   115 TWLSCGSLCLLGCVAGCCFIPFCVDALQDVDHYCPNCKALLGTYKR 160

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0050699 "WW domain binding" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042347 "negative regulation of NF-kappaB import into nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0001817 "regulation of cytokine production" evidence=IEA

UNIPROTKB|Q2KHV3 LITAF "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 28/106 (26%), Positives = 45/106 (42%)

Query:    16 GQNP--YQKGEIP-PNAILGDPMGIPIQQTI-YRDTPAPFSCVYCGNSGVTQVRSKPSSA 71
             G NP  Y    +P PNA       + +QQ I + D P    C  C    VTQ+     + 
Sbjct:    55 GMNPPAYYTQPVPVPNANAIAVQTVYVQQPISFYDRPVQMCCPSCNKMIVTQLSYNAGAL 114

Query:    72 AVVGC----MMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEK 113
               + C    ++    G CF+   +D L    H+CP+C   +  +++
Sbjct:   115 TWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHHCPNCKALLGTYKR 160

GO:0004871 "signal transducer activity" evidence=ISS

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISS

GO:0050699 "WW domain binding" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0042347 "negative regulation of NF-kappaB import into nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0001817 "regulation of cytokine production" evidence=IEA

FB|FBgn0050269 CG30269 [Drosophila melanogaster (taxid:7227)]

 Score = 92 (37.4 bits), Expect = 0.00067, P = 0.00067
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query:    44 YRDTPAPFSCVYCGNSGVTQVRSKPSSA----AVVGCMMPFFLGICF-LCPSMDCLWHKY 98
             Y   P    C YC N   T+V  KP+S     A++ C+   +  +C   C S  C+ +  
Sbjct:    71 YGPEPMDVQCPYCHNYARTRVSFKPNSRTHLIALILCLFQLYCCVCLPYCIS-SCM-NTN 128

Query:    99 HYCPSCNEKVANFEKR 114
             HYC  C+  +  ++++
Sbjct:   129 HYCGMCDRYLGTYDRK 144


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.483    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      134       134   0.00091  102 3  12 22  0.38    31
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  538 (57 KB)
  Total size of DFA:  122 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.14u 0.12s 11.26t   Elapsed:  00:00:01
  Total cpu time:  11.14u 0.12s 11.26t   Elapsed:  00:00:01
  Start:  Fri May 10 01:34:29 2013   End:  Fri May 10 01:34:30 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031355 SubName- Full=Putative uncharacterized protein; (134 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
pfam10601	73	pfam10601, zf-LITAF-like, LITAF-like zinc ribbon d	3e-16
smart00714	67	smart00714, LITAF, Possible membrane-associated mo	1e-11

>gnl|CDD|204526 pfam10601, zf-LITAF-like, LITAF-like zinc ribbon domain

 Score = 68.1 bits (167), Expect = 3e-16
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 44  YRDTPAPFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGI---CFLCPSMDCLWHKYHY 100
           + DTP    C  C  + VT+V  K  +   + C++ F LG    C +   MD      HY
Sbjct: 1   FGDTPVQIYCPSCQQNVVTRVEYKSGAGTWLCCLLLFLLGCWGCCCIPFCMDSCKDVIHY 60

Query: 101 CPSCNEKVANFEK 113
           CP+C   +  +++
Sbjct: 61  CPNCGNLLGVYKR 73

Members of this family display a conserved zinc ribbon structure with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure. Length = 73

>gnl|CDD|197841 smart00714, LITAF, Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins

 Score = 55.8 bits (135), Expect = 1e-11
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 48  PAPFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGICFLCP-SMDCLWHKYHYCPSCNE 106
           P    C  C N+  T+V ++    A + C + FFL  C   P  +D      HYCP+C  
Sbjct: 1   PYQIFCPRCQNNVTTRVETETGVLAWLICFLLFFLCFCCCLPCCLDSFKDVNHYCPNCGA 60

Query: 107 KVANFEK 113
            +  + +
Sbjct: 61  FLGTYNR 67

Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
PF10601	73	zf-LITAF-like: LITAF-like zinc ribbon domain; Inte	99.93
smart00714	67	LITAF Possible membrane-associated motif in LPS-in	99.9
PF10164	98	DUF2367: Uncharacterized conserved protein (DUF236	97.69
PF14353	128	CpXC: CpXC protein	90.09
KOG4440	993	consensus NMDA selective glutamate-gated ion chann	89.59
PF14205	55	Cys_rich_KTR: Cysteine-rich KTR	80.04

>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues

Probab=99.93  E-value=8.6e-26  Score=151.50  Aligned_cols=70  Identities=24%  Similarity=0.601  Sum_probs=64.1

Q ss_pred             cCCcCeeEECCCCCCeEEeEEEEccChhHHHHHHHHhhhhh--hccccc-ccccCCceeECCCcCceeEEEec
Q 032751           44 YRDTPAPFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGI--CFLCPS-MDCLWHKYHYCPSCNEKVANFEK  113 (134)
Q Consensus        44 ~~~~P~~~~CP~C~~~v~T~V~~~~g~~t~i~~~~lcl~g~--C~l~p~-~d~ckDv~H~Cp~C~~~lG~~~r  113 (134)
                      |+++|+.++||+||++++|+|++++|..||+++++|+++++  |+++|| +|++||++|+||+||++||+|+|
T Consensus         1 ~~~~p~~~~CP~C~~~~~T~v~~~~g~~t~~~~~~l~~~~~~~~~~iP~~~~~~kd~~H~Cp~C~~~lg~~~r   73 (73)
T PF10601_consen    1 FGPEPVRIYCPYCQQQVQTRVEYKSGTMTYICAALLCLFGCWPCCCIPFCCDSCKDVYHYCPNCGAFLGTYKR   73 (73)
T ss_pred             CCCCceeeECCCCCCEEEEEEEEEeChHHHHHHHHHHHHHHHHHhhHhhccccccCceEECCCCCCEeEEEeC
Confidence            68999999999999999999999999999999999999864  445555 69999999999999999999987

Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].

>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins

Probab=99.90  E-value=4.3e-24  Score=141.25  Aligned_cols=66  Identities=27%  Similarity=0.645  Sum_probs=58.9

Q ss_pred             CeeEECCCCCCeEEeEEEEccChhHHHHHHHHhhhhhhcccc-cccccCCceeECCCcCceeEEEec
Q 032751           48 PAPFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGICFLCP-SMDCLWHKYHYCPSCNEKVANFEK  113 (134)
Q Consensus        48 P~~~~CP~C~~~v~T~V~~~~g~~t~i~~~~lcl~g~C~l~p-~~d~ckDv~H~Cp~C~~~lG~~~r  113 (134)
                      |+.+.||+||++++|+|++++|.+||+++++++++++|+++| ++|++||++|+||+||++||+|+|
T Consensus         1 p~~i~Cp~C~~~~~T~v~~~~g~~t~~~~~ll~~~~~~~~iP~~~~~~kd~~H~Cp~C~~~lg~~~r   67 (67)
T smart00714        1 PYQLFCPRCQNNVTTRVETETGVCAWLICCLLFLLCFCCCLPCCLDSFKDVNHYCPNCGAFLGTYNR   67 (67)
T ss_pred             CcceECCCCCCEEEEEEEEEeChHHHHHHHHHHHHHHHHHHHHhcccccCccEECCCCCCEeEEecC
Confidence            678999999999999999999999999999888765455555 469999999999999999999986

>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus

Probab=97.69  E-value=0.00016  Score=51.58  Aligned_cols=50  Identities=16%  Similarity=0.316  Sum_probs=34.6

Q ss_pred             eeEECCCCCCeEEeEEEEccChhHHHHHHHHhhhhhhcccccccccCCceeECCCcCce
Q 032751           49 APFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEK  107 (134)
Q Consensus        49 ~~~~CP~C~~~v~T~V~~~~g~~t~i~~~~lcl~g~C~l~p~~d~ckDv~H~Cp~C~~~  107 (134)
                      +.--||.|+.-++   +.+-+...|++|+++|=+|+.|+      +.+.+-+|+||+..
T Consensus        48 vvggCp~CrvG~l---e~~ft~~Gi~~AI~fFPiGilcc------~~~r~~rC~nCG~~   97 (98)
T PF10164_consen   48 VVGGCPACRVGVL---EDSFTCCGILCAIFFFPIGILCC------LAMRERRCSNCGAT   97 (98)
T ss_pred             EecCCCCCceeee---cccccHHHHHHHHHHHhhHHHHh------hhcCccccCCCCcc
Confidence            3346999987665   56678888888877766775211      12466799999974

It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.

>PF14353 CpXC: CpXC protein

Probab=90.09  E-value=0.53  Score=33.93  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=28.6

Q ss_pred             eEECCCCCCeEEeEEEEccChhHH--HHHHHHhhhhhhcccccccccCCceeECCCcCceeEE
Q 032751           50 PFSCVYCGNSGVTQVRSKPSSAAV--VGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVAN  110 (134)
Q Consensus        50 ~~~CP~C~~~v~T~V~~~~g~~t~--i~~~~lcl~g~C~l~p~~d~ckDv~H~Cp~C~~~lG~  110 (134)
                      ++.||+|++.....+........-  +---+|  =|           .=-.|.||+||+..-.
T Consensus         1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il--~g-----------~l~~~~CP~Cg~~~~~   50 (128)
T PF14353_consen    1 EITCPHCGHEFEFEVWTSINADEDPELKEKIL--DG-----------SLFSFTCPSCGHKFRL   50 (128)
T ss_pred             CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHH--cC-----------CcCEEECCCCCCceec
Confidence            378999999988888775432211  111222  11           1114589999987643

>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=89.59  E-value=0.14  Score=47.58  Aligned_cols=56  Identities=20%  Similarity=0.350  Sum_probs=48.0

Q ss_pred             cCCcCeeEECCCCCCeEEeEEEEccChhHHHHHHHHhhhhhhcccccccccCCceeECCCcCcee
Q 032751           44 YRDTPAPFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKV  108 (134)
Q Consensus        44 ~~~~P~~~~CP~C~~~v~T~V~~~~g~~t~i~~~~lcl~g~C~l~p~~d~ckDv~H~Cp~C~~~l  108 (134)
                      -++.|..+.|-.|...+.+.+.+|.         +|++++|--+|+|.+++.|..|.||.|....
T Consensus       929 p~d~~~vl~csR~re~vesdvhret---------ilflwPcsPlPcflssfsdfvhicPlcShim  984 (993)
T KOG4440|consen  929 PKDKPLVLFCSRCREIVESDVHRET---------ILFLWPCSPLPCFLSSFSDFVHICPLCSHIM  984 (993)
T ss_pred             CCCcceEEEeechhhcCCCCcChhh---------heecCCCCCccccccccccceeeCCccCcce
Confidence            3789999999999999999999986         6666775456777899999999999998765

>PF14205 Cys_rich_KTR: Cysteine-rich KTR

Probab=80.04  E-value=1.7  Score=28.03  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=16.3

Q ss_pred             eeEECCCCCCeEEeEEEEccC
Q 032751           49 APFSCVYCGNSGVTQVRSKPS   69 (134)
Q Consensus        49 ~~~~CP~C~~~v~T~V~~~~g   69 (134)
                      ..+.||.|+.....+|+...-
T Consensus         3 ~Wi~CP~CgnKTR~kir~DT~   23 (55)
T PF14205_consen    3 EWILCPICGNKTRLKIREDTV   23 (55)
T ss_pred             eEEECCCCCCccceeeecCce
Confidence            467899999888888877543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00