Citrus Sinensis ID: 032755

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVFFLFPVLFACSMKFKVYLWSIGY
Secondary Structure (PSIPRED)
ccccccccccccEEccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccHHHHHHcccccccccccHHHHHHccccccEEEEEccEEEEEEcEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHcccHHHccccccccccHHHHHHHHHHccccEEEEHHHHHEHEccEEEEEEEEccc
Coil and Loop (DISEMBL)
mslslqgchrlrgrragsslyldvhivvdpfssvsaahgvgenvrhqihkshpevsevfihidpayfqfspstmdqlglegckahssnicvddldIDAVVYNTlstkfpevfFLFPVLFACSMKFKVYLWSIGY
Flexible Loop (DISEMBL)
mslslqgcHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVFFLFPVLFACSMKFKVYLWSIGY
Low Complexity Region (SEG)
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKfpevfflfpvlfACSMKFKVYLWSIGY
Disordered region (IsUnstruct)
**************RAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVFFLFPVLFACSMKFKVYLWSI**
Disordered Region (DISOPRED)
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY*************************DDLDIDAVVYNTLSTKFPEVFFLFPVLFACSMKFKVYLWSIGY
Disordered Region (DISEMBL)
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVFFLFPVLFACSMKFKVYLWSIGY
Disordered Region (DISPRO)
****LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVFFLFPVLFACSMKFKVYLWSIGY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVFFLFPVLFACSMKFKVYLWSIGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q8L725	471	Metal tolerance protein C	yes	no	0.761	0.216	0.622	5e-30
Q10LJ2	389	Metal tolerance protein 2	yes	no	0.440	0.151	0.745	8e-20

>sp|Q8L725|MTPC1_ARATH Metal tolerance protein C1 OS=Arabidopsis thaliana GN=MTPC1 PE=2 SV=1

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 78/106 (73%), Gaps = 4/106 (3%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct: 307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIDP 366

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
           A+ QFS ST D   +       SNIC +   ++A V +  S++  E
Sbjct: 367 AFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSE 408

Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q10LJ2|MTP2_ORYSJ Metal tolerance protein 2 OS=Oryza sativa subsp. japonica GN=MTP2 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 51/59 (86%)

Query: 4   SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI 62
            ++GCHRLRGR+AG+SLYLDVHI V PF SVSAAH +GE VRHQI KSH +V+EVFIHI
Sbjct: 320 GVKGCHRLRGRKAGTSLYLDVHIEVYPFLSVSAAHDIGETVRHQIQKSHNQVAEVFIHI 378

Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
224132372	453	metal tolerance protein [Populus trichoc	0.791	0.233	0.644	7e-33
359479745	520	PREDICTED: metal tolerance protein C1 [V	0.783	0.201	0.663	5e-31
297828503	462	hypothetical protein ARALYDRAFT_322424 [	0.783	0.227	0.641	5e-30
255559272	479	cation efflux protein/ zinc transporter,	0.746	0.208	0.594	4e-29
449436799	500	PREDICTED: metal tolerance protein C1-li	0.768	0.206	0.605	1e-28
30690801	471	metal tolerance protein C1 [Arabidopsis	0.761	0.216	0.622	4e-28
30690804	468	metal tolerance protein C1 [Arabidopsis	0.761	0.217	0.622	4e-28
356500266	491	PREDICTED: metal tolerance protein C1-li	0.776	0.211	0.601	1e-26
356535392	490	PREDICTED: metal tolerance protein C1-li	0.776	0.212	0.579	7e-26
3738295	483	unknown protein [Arabidopsis thaliana]	0.761	0.211	0.559	2e-25

>gi|224132372|ref|XP_002321323.1| metal tolerance protein [Populus trichocarpa] gi|222862096|gb|EEE99638.1| metal tolerance protein [Populus trichocarpa]

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 69/107 (64%), Positives = 81/107 (75%), Gaps = 1/107 (0%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           +QGCHRLRGRRAGSSLYLDVHIVVDPF SVSAAH +GENVR +IH SHP ++EVFIHIDP
Sbjct: 285 VQGCHRLRGRRAGSSLYLDVHIVVDPFLSVSAAHEIGENVRQEIHNSHPGIAEVFIHIDP 344

Query: 65  AYFQFSPSTMDQ-LGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
           AY   SP+ MDQ   L G    +  I +DD DI+ +V +  S+K PE
Sbjct: 345 AYLCISPTMMDQEENLNGKVNQNKKISLDDKDIELIVSDVFSSKIPE 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479745|ref|XP_002269478.2| PREDICTED: metal tolerance protein C1 [Vitis vinifera] gi|296086610|emb|CBI32245.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 81/107 (75%), Gaps = 2/107 (1%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHI VDPFSSVSAAH VGENVRHQIHKSHP VSEVFIHIDP
Sbjct: 331 VKGCHRLRGRRAGSSLYLDVHIEVDPFSSVSAAHNVGENVRHQIHKSHPGVSEVFIHIDP 390

Query: 65  AYFQFSPSTMDQL-GLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
           A  Q SPS M+Q   L+       N+  +   ++ +V N LS+KF E
Sbjct: 391 AISQISPSIMEQQENLKEMNYQKRNVSSEHNGVE-IVSNVLSSKFSE 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828503|ref|XP_002882134.1| hypothetical protein ARALYDRAFT_322424 [Arabidopsis lyrata subsp. lyrata] gi|297327973|gb|EFH58393.1| hypothetical protein ARALYDRAFT_322424 [Arabidopsis lyrata subsp. lyrata]

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/106 (64%), Positives = 80/106 (75%), Gaps = 1/106 (0%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct: 295 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINMNHPEVSEVFIHIDP 354

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
           A+ QFS STMD   +       SNIC +   ++A V +  S++F E
Sbjct: 355 AFLQFSCSTMDHDSITKSN-QESNICQEIKHVEATVSDIFSSQFSE 399

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559272|ref|XP_002520656.1| cation efflux protein/ zinc transporter, putative [Ricinus communis] gi|223540041|gb|EEF41618.1| cation efflux protein/ zinc transporter, putative [Ricinus communis]

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 78/106 (73%), Gaps = 6/106 (5%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSL+LDVHI VDPF SVSAAH +GE VR +IH+S+PE++EVFIHIDP
Sbjct: 310 VKGCHRLRGRRAGSSLHLDVHIEVDPFLSVSAAHEIGEKVRQEIHESYPEIAEVFIHIDP 369

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
           AY  FS +      +EG       I +DD DI  ++ NT  +KFPE
Sbjct: 370 AYLHFSSN------VEGTADQDRYISLDDKDIAMIISNTFLSKFPE 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436799|ref|XP_004136180.1| PREDICTED: metal tolerance protein C1-like [Cucumis sativus] gi|449524166|ref|XP_004169094.1| PREDICTED: metal tolerance protein C1-like [Cucumis sativus]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 79/109 (72%), Gaps = 6/109 (5%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHI VDPF SVSAAH +GENVRH+IH SHPEVSEVFIHIDP
Sbjct: 326 VKGCHRLRGRRAGSSLYLDVHIEVDPFLSVSAAHSIGENVRHEIHTSHPEVSEVFIHIDP 385

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVD---DLDIDAVVYNTLSTKFPE 110
           +   F P   +Q   +   A +SN   D     +I+A V + + +KFPE
Sbjct: 386 SISHFPPKLSNQ---QAASAGTSNQSTDFPLTENIEATVSDIVQSKFPE 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690801|ref|NP_182304.2| metal tolerance protein C1 [Arabidopsis thaliana] gi|71151963|sp|Q8L725.1|MTPC1_ARATH RecName: Full=Metal tolerance protein C1; Short=AtMTPc1; AltName: Full=AtMTP6 gi|22655099|gb|AAM98140.1| unknown protein [Arabidopsis thaliana] gi|30387579|gb|AAP31955.1| At2g47830 [Arabidopsis thaliana] gi|330255799|gb|AEC10893.1| metal tolerance protein C1 [Arabidopsis thaliana]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 78/106 (73%), Gaps = 4/106 (3%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct: 307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIDP 366

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
           A+ QFS ST D   +       SNIC +   ++A V +  S++  E
Sbjct: 367 AFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSE 408

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690804|ref|NP_850480.1| metal tolerance protein C1 [Arabidopsis thaliana] gi|330255800|gb|AEC10894.1| metal tolerance protein C1 [Arabidopsis thaliana]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 78/106 (73%), Gaps = 4/106 (3%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct: 307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIDP 366

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
           A+ QFS ST D   +       SNIC +   ++A V +  S++  E
Sbjct: 367 AFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSE 408

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500266|ref|XP_003518954.1| PREDICTED: metal tolerance protein C1-like [Glycine max]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/108 (60%), Positives = 77/108 (71%), Gaps = 4/108 (3%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGS LYLDVHI VDPFSSVSAAH +GENVRHQIHKSHP V EVFIHIDP
Sbjct: 319 VKGCHRLRGRRAGSYLYLDVHIEVDPFSSVSAAHDIGENVRHQIHKSHPTVVEVFIHIDP 378

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNI-CVDDLDIDAVVYNTLSTKFPEV 111
           A    S     Q    G   HSS +   +D +I  +V + +S+ FP++
Sbjct: 379 AMSHVS---CQQDSWSGGMDHSSIVPAEEDSNIKGIVSDIISSNFPQM 423

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535392|ref|XP_003536229.1| PREDICTED: metal tolerance protein C1-like [Glycine max]

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 78/107 (72%), Gaps = 3/107 (2%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCH LRGRRAGS LYLDVHI VDPFSSVSAAH +GENVRHQIHKSHP V EVFIHIDP
Sbjct: 319 VKGCHCLRGRRAGSYLYLDVHIEVDPFSSVSAAHDIGENVRHQIHKSHPTVVEVFIHIDP 378

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEV 111
           A    S ++  +    G    SS +  +D +I+ +V + +S+ FP++
Sbjct: 379 A---MSHASHQRDSWSGDMNQSSIVPAEDSNIEGIVSDIISSNFPQM 422

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3738295|gb|AAC63637.1| unknown protein [Arabidopsis thaliana]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 78/118 (66%), Gaps = 16/118 (13%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI-- 62
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHI  
Sbjct: 307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIGI 366

Query: 63  ----------DPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110
                     DPA+ QFS ST D   +       SNIC +   ++A V +  S++  E
Sbjct: 367 EHLSSQTFLADPAFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSE 420

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
TAIR|locus:2043328	471	AT2G47830 [Arabidopsis thalian	0.738	0.210	0.631	4.1e-28
TIGR_CMR|CBU_1362	378	CBU_1362 "cation-efflux family	0.417	0.148	0.482	2e-07
TIGR_CMR|GSU_2613	296	GSU_2613 "cation efflux family	0.417	0.189	0.357	5.5e-06
UNIPROTKB|Q4K5J6	298	fieF "Cation diffusion facilit	0.425	0.191	0.344	3.3e-05
TIGR_CMR|CHY_0502	303	CHY_0502 "cation efflux family	0.410	0.181	0.357	4.4e-05
TIGR_CMR|DET_0331	311	DET_0331 "cation efflux family	0.559	0.241	0.308	7.6e-05
TIGR_CMR|SO_4475	296	SO_4475 "cation efflux family	0.477	0.216	0.343	0.00015
TIGR_CMR|BA_4640	298	BA_4640 "cation efflux family	0.395	0.177	0.333	0.00041
ASPGD|ASPL0000052398	401	AN10155 [Emericella nidulans (	0.388	0.129	0.339	0.00085

TAIR|locus:2043328 AT2G47830 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 4.1e-28, P = 4.1e-28
 Identities = 65/103 (63%), Positives = 77/103 (74%)

Query:     5 LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct:   307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIDP 366

Query:    65 AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTK 107
             A+ QFS ST D   +       SNIC +   ++A V +  S++
Sbjct:   367 AFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQ 405

GO:0006812 "cation transport" evidence=IEA;ISS

GO:0008324 "cation transmembrane transporter activity" evidence=IEA;ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TIGR_CMR|CBU_1362 CBU_1362 "cation-efflux family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query:     9 HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             H+LR R  G ++++DVHI V P  SVS  H VGE V   + KS   V++V +HIDP
Sbjct:   237 HQLRTRYHGGNIFVDVHIQVAPDISVSEGHYVGEQVHLTLLKSVEHVADVTVHIDP 292

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

TIGR_CMR|GSU_2613 GSU_2613 "cation efflux family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 111 (44.1 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query:     9 HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             H +RGRR+G  + +D+ + +DP  +V  +H +   V+  I +  P V +V IHI+P
Sbjct:   230 HEIRGRRSGQYIIIDLKLDMDPEMTVKQSHDIATCVKKLIFERFPNVGDVMIHINP 285

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q4K5J6 fieF "Cation diffusion facilitator family transporter FieF" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 104 (41.7 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query:     7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             G H LR R +GS  ++ +H+ +    ++S AHG+ +     I K++P  +EV +H DP
Sbjct:   232 GAHDLRTRISGSHWFVQLHLELPGELTLSVAHGISDQAADAIQKAYPR-AEVLVHADP 288

GO:0005506 "iron ion binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

TIGR_CMR|CHY_0502 CHY_0502 "cation efflux family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 103 (41.3 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query:     9 HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             H+LR R++GS  ++D+H+VV    SV   H +   +  +I +  P  S V IH +P
Sbjct:   230 HKLRARKSGSERFIDLHLVVPEKLSVKEVHDLCNKIEREIEEKLPN-SHVLIHAEP 284

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

TIGR_CMR|DET_0331 DET_0331 "cation efflux family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 101 (40.6 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 25/81 (30%), Positives = 43/81 (53%)

Query:     9 HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQ 68
             H LR R+AGS  Y+D+H+V+    SV  AH + +++   + K   ++  V IH++P   +
Sbjct:   230 HNLRTRKAGSYRYVDLHLVMPKTLSVEKAHSICDHLEKDL-KDKLKIDYVTIHVEPCTEE 288

Query:    69 FSPSTMDQLGLEGCKAHSSNI 89
               P    Q+    CK   S++
Sbjct:   289 NCPEC--QIN---CKKRPSDL 304

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

TIGR_CMR|SO_4475 SO_4475 "cation efflux family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 98 (39.6 bits), Expect = 0.00015, P = 0.00015
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query:     7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66
             G H LR R+AG ++++  H+ +D   S++ AH + +    ++ K+  E +EV IH DP  
Sbjct:   232 GLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRV-KAAFEDAEVIIHQDPV- 289

Query:    67 FQFSPST 73
              Q  P+T
Sbjct:   290 -QVEPTT 295

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

TIGR_CMR|BA_4640 BA_4640 "cation efflux family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 94 (38.1 bits), Expect = 0.00041, P = 0.00041
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query:    11 LRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             L  R  G  + +D+ + VDP+ +V   H +G++V+  + K    V  VF+HI+P
Sbjct:   242 LYAREHGHYVIVDIKVSVDPYITVEEGHRIGKHVKETLMKQD-NVQNVFVHINP 294

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

ASPGD|ASPL0000052398 AN10155 [Emericella nidulans (taxid:162425)]

 Score = 93 (37.8 bits), Expect = 0.00085, P = 0.00085
 Identities = 18/53 (33%), Positives = 33/53 (62%)

Query:    11 LRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63
             +R   +G  L ++V IV+DP  S+ A H V E ++ ++ +S P+V   ++H+D
Sbjct:   335 VRAYTSGPRLVVEVDIVMDPSDSLRATHDVAEELQTKL-ESLPDVERAYVHVD 386


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      134       122   0.00091  102 3  11 22  0.47    30
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  132 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.67u 0.12s 12.79t   Elapsed:  00:00:01
  Total cpu time:  12.67u 0.12s 12.79t   Elapsed:  00:00:01
  Start:  Mon May 20 20:24:13 2013   End:  Mon May 20 20:24:14 2013

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008324 "cation transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q10LJ2	MTP2_ORYSJ	No assigned EC number	0.7457	0.4402	0.1516	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrMTP6 metal tolerance protein (453 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
COG0053	304	COG0053, MMT1, Predicted Co/Zn/Cd cation transport	1e-13
TIGR01297	268	TIGR01297, CDF, cation diffusion facilitator famil	7e-12
pfam01545	273	pfam01545, Cation_efflux, Cation efflux family	4e-10
PRK09509	299	PRK09509, fieF, ferrous iron efflux protein F; Rev	0.001

>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query: 6   QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
           +G H LR R++GS +++DVHI VDP  S+  AH + + V  +I K  P+V++V IH++P 
Sbjct: 231 KGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPL 290

Length = 304

>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter

 Score = 60.3 bits (147), Expect = 7e-12
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 6   QGCHRLRGRRAGSS-LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           +G H L   R G   L+LDVH+VVDP   +  AH +   +  +I K HP +  V I ++P
Sbjct: 208 KGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEP 267

Query: 65  A 65
            
Sbjct: 268 C 268

This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence [Transport and binding proteins, Cations and iron carrying compounds]. Length = 268

>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 20/60 (33%), Positives = 36/60 (60%)

Query: 7   GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66
           G H LR  ++G   ++D+HI VDP  +V  AH + + +   + +  P +++V IH++PA 
Sbjct: 211 GVHDLRVWKSGPKYFVDIHIEVDPDLTVEEAHEIADEIERALKEKFPGIADVTIHVEPAP 270

Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells. Length = 273

>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 6   QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
            G H LR R++G + ++ +H+ ++    +  AH + + V   + +  P  S+V IH DP
Sbjct: 229 SGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPG-SDVIIHQDP 286

Length = 299

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
COG0053	304	MMT1 Predicted Co/Zn/Cd cation transporters [Inorg	99.54
TIGR01297	268	CDF cation diffusion facilitator family transporte	99.47
PRK09509	299	fieF ferrous iron efflux protein F; Reviewed	99.43
PF01545	284	Cation_efflux: Cation efflux family; InterPro: IPR	99.29
PRK03557	312	zinc transporter ZitB; Provisional	99.2
KOG1485	412	consensus Mitochondrial Fe2+ transporter MMT1 and	98.01
COG1230	296	CzcD Co/Zn/Cd efflux system component [Inorganic i	97.33
KOG1482	379	consensus Zn2+ transporter [Inorganic ion transpor	97.13
KOG1483	404	consensus Zn2+ transporter ZNT1 and related Cd2+/Z	95.76
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	94.62
PF03780	108	Asp23: Asp23 family; InterPro: IPR005531 This entr	88.66
PF09580	177	Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ	82.44

>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

Probab=99.54  E-value=3e-14  Score=118.44  Aligned_cols=70  Identities=37%  Similarity=0.643  Sum_probs=66.3

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCCC
Q 032755            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSP   71 (134)
Q Consensus         2 vpgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~~~~~~   71 (134)
                      +|||.++|++|+|+.|+.+++|+|++|||+||+.+||+|++++|++|++.+|++.+++||+||.......
T Consensus       227 ~~~V~~v~~lr~R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~~  296 (304)
T COG0053         227 VPGVKGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEEE  296 (304)
T ss_pred             CCcceeeecceeeeeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcccccc
Confidence            6899999999999999999999999999999999999999999999999999889999999999876543

>TIGR01297 CDF cation diffusion facilitator family transporter

Probab=99.47  E-value=2.2e-13  Score=108.41  Aligned_cols=64  Identities=36%  Similarity=0.648  Sum_probs=61.8

Q ss_pred             CCCceeeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecC
Q 032755            2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA   65 (134)
Q Consensus         2 vpgV~~VhdLR~R~~G~-~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~   65 (134)
                      +|||.++|++|+|+.|+ .+++++|+++|+++|+.|||++++++|+++++++|++.+++||+||+
T Consensus       204 ~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~  268 (268)
T TIGR01297       204 IPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC  268 (268)
T ss_pred             CCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            58999999999999999 99999999999999999999999999999999999999999999994

This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.

>PRK09509 fieF ferrous iron efflux protein F; Reviewed

Probab=99.43  E-value=6.5e-13  Score=109.01  Aligned_cols=65  Identities=26%  Similarity=0.528  Sum_probs=61.7

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 032755            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (134)
Q Consensus         2 vpgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~~   67 (134)
                      +|||.++|++|+|+.|+..++++||.+++++|++|+|+|++++|++|++++|. .+++||+||+..
T Consensus       225 ~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~-~~v~ihveP~~~  289 (299)
T PRK09509        225 WPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPG-SDVIIHQDPCSV  289 (299)
T ss_pred             CCCCcCceeeeeEeeCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEEeCCCCC
Confidence            58999999999999999999999999999999999999999999999999997 579999999763

>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt

Probab=99.29  E-value=2.1e-11  Score=97.50  Aligned_cols=66  Identities=29%  Similarity=0.489  Sum_probs=62.7

Q ss_pred             CCCceeeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 032755            2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (134)
Q Consensus         2 vpgV~~VhdLR~R~~G~-~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~~   67 (134)
                      .|||.+++++|+|+.|+ .+++++|+.+++++|++|+|++.+++++.+++++|++.+++||++|+..
T Consensus       217 ~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~  283 (284)
T PF01545_consen  217 VPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE  283 (284)
T ss_dssp             TSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred             CCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence            58999999999999999 9999999999999999999999999999999999999999999999863

These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.

>PRK03557 zinc transporter ZitB; Provisional

Probab=99.20  E-value=9.6e-11  Score=97.17  Aligned_cols=62  Identities=10%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 032755            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (134)
Q Consensus         2 vpgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~~   67 (134)
                      +|||.++|++|+|+.|+.+++|+|+.+++++   ++|+|++++|++|+++++ +.+++||+||...
T Consensus       233 ~~gV~~vh~l~~~~~G~~~~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~-i~~vtIh~e~~~~  294 (312)
T PRK03557        233 IPEVRNVHHVHVWMVGEKPVMTLHVQVIPPH---DHDALLDRIQDYLMHHYQ-IEHATIQMEYQPC  294 (312)
T ss_pred             CCCceeEEEEEEEEeCCeEEEEEEEEECCCC---CHHHHHHHHHHHHHHhCC-CCEEEEEeccCcC
Confidence            6999999999999999999999999999986   679999999999999887 7899999999853

>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]

Probab=98.01  E-value=1.5e-05  Score=69.43  Aligned_cols=64  Identities=34%  Similarity=0.591  Sum_probs=59.1

Q ss_pred             CCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 032755            3 LSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (134)
Q Consensus         3 pgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~~   67 (134)
                      +.+.+++.+|++..|..+++++|+++|++|++..||+|.+-+++.|.. .|++.++.||+|-...
T Consensus       339 ~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~-l~ever~fvh~d~e~~  402 (412)
T KOG1485|consen  339 KLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIEL-LPEVERAFVHIDYEFL  402 (412)
T ss_pred             CccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHHHHHHHHhh-cchheeeeeecCcccc
Confidence            467899999999999999999999999999999999999999999965 9999999999886654

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]

Probab=97.33  E-value=0.00078  Score=56.66  Aligned_cols=61  Identities=18%  Similarity=0.268  Sum_probs=51.5

Q ss_pred             CCCceeeeeEEEEee-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 032755            2 SLSLQGCHRLRGRRA-GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (134)
Q Consensus         2 vpgV~~VhdLR~R~~-G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~   66 (134)
                      .|||.++|++++|.. +....+.+|+.+++..+-.+   +.+++++.+.+++. +.++||++|+..
T Consensus       234 ~~~v~~vhdlHvWsi~~~~~~~t~Hv~v~~~~~~~~---~~~~~~~~l~~~~~-I~hvTiQ~e~~~  295 (296)
T COG1230         234 IPGVASVHDLHVWSITGGEHALTLHVVVDEVADADA---ALDQIVRRLLEKYG-IEHVTIQLETEG  295 (296)
T ss_pred             CCCccceeecccCCCCCCceeEEEEEEecCccchHH---HHHHHHHHHhhhcC-cceEEEEecCCC
Confidence            699999999999999 55899999999995433333   88899999988877 899999998754

>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]

Probab=97.13  E-value=0.002  Score=55.81  Aligned_cols=64  Identities=23%  Similarity=0.288  Sum_probs=56.9

Q ss_pred             CCCceeeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCC
Q 032755            2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQF   69 (134)
Q Consensus         2 vpgV~~VhdLR~R~~G~-~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~~~~   69 (134)
                      ++||..||+|++|...- +..+.+|+.++++   +++.+|-+++.+.|+++|. +.++||++||.....
T Consensus       306 iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~---ad~~~vL~~~~~~i~~~~~-~~~vTiQie~~~~~~  370 (379)
T KOG1482|consen  306 IEGVKAVHDLHIWSITVGKVALSVHLAIDSE---ADAEEVLDEARSLIKRRYG-ISHVTIQIEPYTEEM  370 (379)
T ss_pred             hcceeEEEEEEEEEEecCceEEEEEEeecCC---CCHHHHHHHHHHHHHhhcc-eEEEEEEecCCccch
Confidence            58999999999999865 6889999999965   6788999999999999998 689999999998654

>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]

Probab=95.76  E-value=0.032  Score=48.85  Aligned_cols=60  Identities=18%  Similarity=0.233  Sum_probs=48.3

Q ss_pred             CCCceeeeeEEEEee-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 032755            2 SLSLQGCHRLRGRRA-GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (134)
Q Consensus         2 vpgV~~VhdLR~R~~-G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~   66 (134)
                      +|||..||++++|+. |+.+.+.+||.++.-   .+--++++.|++... .++ |..+||+.|=++
T Consensus       311 ~~gv~~vh~lhvWqL~~~r~IAt~Hi~~~~p---~~~~~~a~~ir~~fh-~~G-Ihs~TiqPeF~~  371 (404)
T KOG1483|consen  311 VPGVISVHDLHVWQLAGSRIIATIHIQIQNP---KEYMKIAEKIRSYFH-DQG-IHSTTIQPEFAP  371 (404)
T ss_pred             CcceeeeeeeeeeeeccceEEEEEEEEecCc---HHHHHHHHHHHHHHH-hcC-Ccceeeccchhh
Confidence            699999999999997 999999999999864   233389999988886 456 788888755444

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=94.62  E-value=0.82  Score=31.57  Aligned_cols=65  Identities=14%  Similarity=0.089  Sum_probs=53.4

Q ss_pred             CCCCceeeeeEEEEeeCCEEEEEEEEEECCCCC--HHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 032755            1 MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSS--VSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (134)
Q Consensus         1 ~vpgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mS--V~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~~   67 (134)
                      ++|++..-..|.+.+.|..=.+.+.+++.+..+  ..+..+++++|+++|+..++ + .+.|++-|...
T Consensus        15 ~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lg-v-~~~V~lv~~gt   81 (96)
T PF14535_consen   15 EFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLG-V-RPEVELVPPGT   81 (96)
T ss_dssp             TSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHS-S--EEEEEE-TT-
T ss_pred             hCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcC-c-eEEEEEECCCC
Confidence            368888888999999999999999999999874  57899999999999999988 3 56777777653

>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family

Probab=88.66  E-value=5.9  Score=27.26  Aligned_cols=53  Identities=25%  Similarity=0.424  Sum_probs=37.3

Q ss_pred             EEEEee-CCEEEEEEEEEECCCCCHHH-HHHHHHHHHHHHHhhCC-CeeEEEEEEe
Q 032755           11 LRGRRA-GSSLYLDVHIVVDPFSSVSA-AHGVGENVRHQIHKSHP-EVSEVFIHID   63 (134)
Q Consensus        11 LR~R~~-G~~~~VDvhI~Vd~~mSV~e-AH~I~~~IE~~I~~~~p-~V~~VtIHve   63 (134)
                      ++++.. +..+.+++++.+....++.+ +.++.++|.+.|.+.-+ .+.+|.|+++
T Consensus        50 v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~  105 (108)
T PF03780_consen   50 VKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE  105 (108)
T ss_pred             eEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence            567666 88999999999999988865 45566666666655333 2356667664

These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].

>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis

Probab=82.44  E-value=6.3  Score=29.67  Aligned_cols=59  Identities=14%  Similarity=0.278  Sum_probs=47.5

Q ss_pred             CceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 032755            4 SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (134)
Q Consensus         4 gV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~   66 (134)
                      .+.+|.+..+--+|...+|-+.+. ..   -....+|..+|++++++.+|.+..|.|..+|.-
T Consensus        86 ~~~~V~~A~vvv~~~~a~Vav~~~-~~---~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~~  144 (177)
T PF09580_consen   86 KVPGVEDATVVVTDDNAYVAVDLD-FN---RFNTKKIKKKVEKAVKSADPRIYNVYVSTDPDI  144 (177)
T ss_pred             cCCCceEEEEEEECCEEEEEEEec-cc---ccchhHHHHHHHHHHHHhCCCccEEEEEcCHHH
Confidence            455677778888899999888887 32   346678999999999999999889999887763

Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
3j1z_P	306	Inward-facing Conformation Of The Zinc Transporter		5e-05
2zzt_A	107	Crystal Structure Of The Cytosolic Domain Of The Ca		2e-04

>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip Revealed By Cryo-electron Microscopy Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 7   GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66
           G H LR R+AG ++++  H+ +D   S++ AH + +    ++ K+  E +EV IH DP  
Sbjct: 232 GLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRV-KAAFEDAEVIIHQDPV- 289
Query: 67  FQFSPST 73
            Q  P+T
Sbjct: 290 -QVEPTT 295

>pdb|2ZZT|A Chain A, Crystal Structure Of The Cytosolic Domain Of The Cation Diffusion Facilitator Family Protein Length = 107

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 4  SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63
          ++   HR+R RR G+  +++  I VD   SV  AH +   +R +  K   ++ +V IH++
Sbjct: 24 NVHNPHRVRIRRVGTKYFIEXDIEVDGKXSVKDAHELTVKIRKEXLKRRDDIEDVTIHVE 83
Query: 64 P 64
          P
Sbjct: 84 P 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
2zzt_A	107	Putative uncharacterized protein; cation diffusion	2e-21
3byp_A	94	CZRB protein; membrane protein, zinc transporter,	6e-19
3h90_A	283	Ferrous-iron efflux pump FIEF; membrane protein, z	2e-15

>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} Length = 107

 Score = 81.3 bits (201), Expect = 2e-21
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 6  QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
             HR+R RR G+  ++++ I VD   SV  AH +   +R ++ K   ++ +V IH++P 
Sbjct: 26 HNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPL 85

Query: 66 Y 66
           
Sbjct: 86 G 86

>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A Length = 94

 Score = 74.7 bits (184), Expect = 6e-19
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 7  GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
            H L+ RRAG   +L+ H+VV   + V  AH + + +   + ++ P + +  IH++P 
Sbjct: 29 EVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPE 86

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Length = 283

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 7   GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
           G H LR R++G + ++ +H+ ++    +  AH V + V   I +  P   +V IH DP 
Sbjct: 223 GAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGS-DVIIHQDPC 280

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
2zzt_A	107	Putative uncharacterized protein; cation diffusion	99.67
3byp_A	94	CZRB protein; membrane protein, zinc transporter,	99.66
3j1z_P	306	YIIP, cation efflux family protein; zinc transport	99.54
3h90_A	283	Ferrous-iron efflux pump FIEF; membrane protein, z	99.5

>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}

Probab=99.67  E-value=3.8e-16  Score=110.27  Aligned_cols=66  Identities=29%  Similarity=0.477  Sum_probs=62.4

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 032755            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (134)
Q Consensus         2 vpgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~~   67 (134)
                      +|||.+||+||+|++|+.+++++||.|+++||+.+||+|+++|++.|++.||.+.+++||+||...
T Consensus        22 ~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtIhvEp~~~   87 (107)
T 2zzt_A           22 FPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPLGN   87 (107)
T ss_dssp             CSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTC
T ss_pred             CCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEEecCCC
Confidence            699999999999999999999999999999999999999999999999999988899999999764

>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A

Probab=99.66  E-value=8.4e-16  Score=104.80  Aligned_cols=63  Identities=27%  Similarity=0.486  Sum_probs=60.5

Q ss_pred             CCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 032755            3 LSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (134)
Q Consensus         3 pgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~   66 (134)
                      |||.+||+||+|++|+.+++++||.|++++|+.++|+|+++|++.|+++||.+ +++||+||..
T Consensus        25 ~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~-~vtIh~ep~~   87 (94)
T 3byp_A           25 GRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPEG   87 (94)
T ss_dssp             TTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-EEEEEEEECC
T ss_pred             CCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCC-EEEEEeCCCC
Confidence            89999999999999999999999999999999999999999999999999975 9999999954

>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}

Probab=99.54  E-value=7.9e-15  Score=119.52  Aligned_cols=69  Identities=26%  Similarity=0.495  Sum_probs=65.0

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCCC
Q 032755            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSP   71 (134)
Q Consensus         2 vpgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~~~~~~   71 (134)
                      +|||.++|++|+|++|+.+++|+||+||+++|+.|+|+|++++|++|++++|. .+++||+||+..++.+
T Consensus       227 ~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~-~~v~IhveP~~~ePt~  295 (306)
T 3j1z_P          227 DPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFED-AEVIIHQDPVQVEPTT  295 (306)
T ss_dssp             STTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTT-CEEEECCEETTSCCCC
T ss_pred             CCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-CeEEEEeCCCCCCCCc
Confidence            68999999999999999999999999999999999999999999999999995 7999999999876554

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A

Probab=99.50  E-value=9.7e-14  Score=111.21  Aligned_cols=65  Identities=29%  Similarity=0.544  Sum_probs=62.3

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 032755            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (134)
Q Consensus         2 vpgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~~   67 (134)
                      +|||.++|++|+|+.|+.+++++|+.+|+++|++++|+|++++|+.|++++|. .+++||+||++.
T Consensus       218 ~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~-~~v~ih~ep~~~  282 (283)
T 3h90_A          218 WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCSV  282 (283)
T ss_dssp             SSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT-CEEEEEEECSCC
T ss_pred             CCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC-CeEEEEeccCCC
Confidence            68999999999999999999999999999999999999999999999999997 799999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d3bypa1	82	d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {	2e-18
d2qfia1	82	d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF	1e-16

>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Cation efflux protein cytoplasmic domain-like
family: Cation efflux protein cytoplasmic domain-like
domain: Putative Zinc transporter CzrB
species: Thermus thermophilus [TaxId: 274]

 Score = 72.1 bits (177), Expect = 2e-18
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 7  GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
            H L+ RRAG   +L+ H+VV   + V  AH + + +   + ++ P + +  IH++P 
Sbjct: 24 EVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPE 81

>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Cation efflux protein cytoplasmic domain-like
family: Cation efflux protein cytoplasmic domain-like
domain: Ferrous-iron efflux pump FieF (YiiP)
species: Escherichia coli [TaxId: 562]

 Score = 67.4 bits (165), Expect = 1e-16
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 6  QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
           G H LR R++G + ++ +H+ ++    +  AH V + V   I +  P  S+V IH DP 
Sbjct: 21 SGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFP-GSDVIIHQDPC 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d3bypa1	82	Putative Zinc transporter CzrB {Thermus thermophil	99.79
d2qfia1	82	Ferrous-iron efflux pump FieF (YiiP) {Escherichia	99.69

>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Cation efflux protein cytoplasmic domain-like
family: Cation efflux protein cytoplasmic domain-like
domain: Putative Zinc transporter CzrB
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=4.4e-19  Score=119.14  Aligned_cols=62  Identities=27%  Similarity=0.517  Sum_probs=59.3

Q ss_pred             CceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 032755            4 SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (134)
Q Consensus         4 gV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~   66 (134)
                      ++.++|+||+|++|+.+++|+||+||++||+.+||+|+++||++|++.||++ +++||+||+.
T Consensus        21 ~vv~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~i~~~ve~~i~~~~~~~-~v~vHveP~g   82 (82)
T d3bypa1          21 RALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPEG   82 (82)
T ss_dssp             TCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-EEEEEEEECC
T ss_pred             CceeeeEEEeeEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCC-EEEEEeCCCC
Confidence            5779999999999999999999999999999999999999999999999985 8999999984

>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Cation efflux protein cytoplasmic domain-like
family: Cation efflux protein cytoplasmic domain-like
domain: Ferrous-iron efflux pump FieF (YiiP)
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=5.7e-20  Score=123.00  Aligned_cols=64  Identities=30%  Similarity=0.552  Sum_probs=61.9

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 032755            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (134)
Q Consensus         2 vpgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~   66 (134)
                      +|||.++|+||+|++|+.+++|+||.||++||+.+||+|++++|+.|++++|+ .+++||+||+.
T Consensus        17 ~~gV~~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~I~~~ie~~l~~~~~~-~~v~iHveP~~   80 (82)
T d2qfia1          17 WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCS   80 (82)
T ss_dssp             SSSCSCBCCCCCCTTSCCBCCBSCTTSTTTCSCGGGHHHHHHHHHHTTSSSCC-SSCBCCCCCSC
T ss_pred             CCCceeeeEEEEEEeCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEEeCCcc
Confidence            69999999999999999999999999999999999999999999999999996 69999999986