Citrus Sinensis ID: 032762

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNGGYGGYPGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGCRCCSYAGEAVNAQTEAEPQN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MGSKVFLMLGLLVSIVLLISSEAAARDLAetsnddqkngevagetngvddakynggyggypgggrggyggypgggrggyggypgrggyggggrghgggycrygccgrgyygrgcrccsyageavnaqteaepqn
Flexible Loop (DISEMBL)
MGSKVFLMLGLLVSIVLLISSEAAARDLAetsnddqkngevagetngvddakynGGYGGYPGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGCRCCSYAGEAvnaqteaepqn
Low Complexity Region (SEG)
MGSKVFlmlgllvsivllissEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNggyggypgggrggyggypgggrggyggypgrggyggggrghgggycrygccgrgyygrgcrccSYAGEAVNAQTEAEPQN
Disordered region (IsUnstruct)
****VFLMLGLLVSIVLLISS******************************KYNGGYGGYPGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGCRCCSYAGEAV**********
Disordered Region (DISOPRED)
**SKVFLMLGLLVSIVLLISSEAAA*************************AKYNGGYGGYPGGGRGGYGGYPGGGRGG*************GRGHGGGYCRYGCCGRGYYGRGCRCCSYAG*************
Disordered Region (DISEMBL)
MGSKVFLMLGLLVSIVLLISSEAAARD************EVAGETNGVDDAKYNGGYGGYPGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGCRCCSYAGEAVNAQTEAEPQN
Disordered Region (DISPRO)
*GSKVFLMLGLLVSIVLLISSEAAARDLAET***************GVDDAKYNGGYGGYPGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGCRCCSYAGEAVNAQT******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNGGYGGYPGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGCRCCSYAGEAVNAQTEAEPQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
P23137	109	Glycine-rich protein OS=N	N/A	no	0.805	0.990	0.481	4e-14
P37704	96	Glycine-rich protein DC7.	N/A	no	0.253	0.354	0.647	6e-06
P37703	144	Glycine-rich protein DC9.	N/A	no	0.268	0.25	0.583	1e-05
P11898	144	Glycine-rich protein HC1	N/A	no	0.268	0.25	0.583	1e-05
Q09134	159	Abscisic acid and environ	N/A	no	0.276	0.232	0.615	5e-05
Q9ZSJ6	116	Glycine-rich protein 3 sh	no	no	0.223	0.258	0.645	0.0005

>sp|P23137|GRP1_TOBAC Glycine-rich protein OS=Nicotiana tabacum GN=GRP PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/135 (48%), Positives = 75/135 (55%), Gaps = 27/135 (20%)

Query: 1   MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNGGYGGY 60
           MGSK FL LGL ++   LISSE  A +LAETSN  + +GE     NGVD           
Sbjct: 1   MGSKAFLFLGLCLAFFFLISSEVVAGELAETSNPMKLDGE-----NGVD----------- 44

Query: 61  PGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGC-RCCSY 119
              GRGGY    G G  G       GG G GG G+    CRYGCC +GY   GC RCCSY
Sbjct: 45  -VDGRGGYNDVGGDGYYG-------GGRGRGGGGYKRRGCRYGCCRKGY--NGCKRCCSY 94

Query: 120 AGEAVNAQTEAEPQN 134
           AGEA++  TEA+P N
Sbjct: 95  AGEAMDKVTEAQPHN 109

Nicotiana tabacum (taxid: 4097)

>sp|P37704|GRP7_DAUCA Glycine-rich protein DC7.1 OS=Daucus carota PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 29/34 (85%)

Query: 1  MGSKVFLMLGLLVSIVLLISSEAAARDLAETSND 34
          MGSK+FL+LGL ++  LLISSE AARDL+ET+ +
Sbjct: 1  MGSKIFLLLGLSIAFALLISSEVAARDLSETTTE 34

May be connected with the initiation of embryogenesis or with the metabolic changes produced by the removal of auxins.

Daucus carota (taxid: 4039)

>sp|P37703|GRP9_DAUCA Glycine-rich protein DC9.1 OS=Daucus carota PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 29/36 (80%)

Query: 1  MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQ 36
          MGSK+FL+LGL ++  +LISSE AAR+LAET+   +
Sbjct: 1  MGSKIFLLLGLSIAFAILISSEVAARELAETAAKTE 36

Daucus carota (taxid: 4039)

>sp|P11898|GRP1_CHERU Glycine-rich protein HC1 OS=Chenopodium rubrum PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 29/36 (80%)

Query: 1  MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQ 36
          MGSK+FL+LGL ++  +LISSE AAR+LAET+   +
Sbjct: 1  MGSKIFLLLGLSIAFAILISSEVAARELAETAAKTE 36

Chenopodium rubrum (taxid: 3560)

>sp|Q09134|GRPA_MEDFA Abscisic acid and environmental stress-inducible protein OS=Medicago falcata PE=2 SV=1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 31/39 (79%), Gaps = 2/39 (5%)

Query: 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53
          +VLLISSE +ARDL ET++D +K  EV  +TN V+DAKY
Sbjct: 1  MVLLISSEVSARDLTETTSDAKK--EVVEKTNEVNDAKY 37

Medicago falcata (taxid: 3878)

>sp|Q9ZSJ6|GRP3S_ARATH Glycine-rich protein 3 short isoform OS=Arabidopsis thaliana GN=GRP3S PE=1 SV=2

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 24/31 (77%), Gaps = 1/31 (3%)

Query: 98  GYCRYGCCGRGYYGRGCRCCSYAGEAVNAQT 128
            YCR+GCC +GY+G   RCCSYAGEAV  Q+
Sbjct: 85  SYCRHGCCYKGYHGCS-RCCSYAGEAVQTQS 114

Regulates the function of the receptor protein kinase WAK1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
270313160	109	glycine-rich protein precursor [Nicotian	0.805	0.990	0.474	3e-13
14516835	109	glycine rich protein [Nicotiana tabacum]	0.805	0.990	0.466	3e-13
121648	109	RecName: Full=Glycine-rich protein; Flag	0.805	0.990	0.481	3e-12
10798746	109	glycine rich protein [Nicotiana tabacum]	0.805	0.990	0.474	7e-12
6723687	106	cell wall protein [Nicotiana tabacum] gi	0.783	0.990	0.407	3e-11
388506358	138	unknown [Lotus japonicus]	0.985	0.956	0.542	3e-10
357493011	133	hypothetical protein MTR_5g084330 [Medic	0.843	0.849	0.525	6e-09
270313162	114	glycine-rich protein precursor [Nicotian	0.843	0.991	0.407	3e-08
15224560	135	glycine-rich protein [Arabidopsis thalia	0.970	0.962	0.459	7e-08
147782905	86	hypothetical protein VITISV_041009 [Viti	0.477	0.744	0.621	1e-06

>gi|270313160|gb|ACZ73647.1| glycine-rich protein precursor [Nicotiana tabacum]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/135 (47%), Positives = 74/135 (54%), Gaps = 27/135 (20%)

Query: 1   MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNGGYGGY 60
           MGSK FL LGL ++I  LISSE  A +LAETSN  + + E     NGV    Y  G GGY
Sbjct: 1   MGSKAFLFLGLCLAIFFLISSEVVAAELAETSNSMKLDNE-----NGV----YVDGRGGY 51

Query: 61  PGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGC-RCCSY 119
            G G  G                  GG G GG G+    CRYGCC +GY   GC RCCSY
Sbjct: 52  NGAGSDG---------------YYGGGRGRGGGGYKRRGCRYGCCRKGY--NGCKRCCSY 94

Query: 120 AGEAVNAQTEAEPQN 134
           AGEA++  TEA+P N
Sbjct: 95  AGEAIDKVTEAQPHN 109

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14516835|gb|AAK57546.1| glycine rich protein [Nicotiana tabacum]

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 73/135 (54%), Gaps = 27/135 (20%)

Query: 1   MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNGGYGGY 60
           MGSK FL LGL ++I  LIS E  A +LAETSN  + + E     NGV    Y  G GGY
Sbjct: 1   MGSKAFLFLGLFLAIFFLISFEVVAAELAETSNSMKSDNE-----NGV----YVDGRGGY 51

Query: 61  PGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGC-RCCSY 119
            G G  G                  GG G GG G+    CRYGCC +GY   GC RCCSY
Sbjct: 52  NGAGSDG---------------YYGGGRGRGGGGYKRRGCRYGCCRKGY--NGCKRCCSY 94

Query: 120 AGEAVNAQTEAEPQN 134
           AGEA++  TEA+P N
Sbjct: 95  AGEAIDKVTEAQPHN 109

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|121648|sp|P23137.1|GRP1_TOBAC RecName: Full=Glycine-rich protein; Flags: Precursor gi|170267|gb|AAB02879.1| glycine-rich protein precursor [Nicotiana tabacum]

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/135 (48%), Positives = 75/135 (55%), Gaps = 27/135 (20%)

Query: 1   MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNGGYGGY 60
           MGSK FL LGL ++   LISSE  A +LAETSN  + +GE     NGVD           
Sbjct: 1   MGSKAFLFLGLCLAFFFLISSEVVAGELAETSNPMKLDGE-----NGVD----------- 44

Query: 61  PGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGC-RCCSY 119
              GRGGY    G G  G       GG G GG G+    CRYGCC +GY   GC RCCSY
Sbjct: 45  -VDGRGGYNDVGGDGYYG-------GGRGRGGGGYKRRGCRYGCCRKGY--NGCKRCCSY 94

Query: 120 AGEAVNAQTEAEPQN 134
           AGEA++  TEA+P N
Sbjct: 95  AGEAMDKVTEAQPHN 109

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10798746|dbj|BAB16425.1| glycine rich protein [Nicotiana tabacum] gi|270313158|gb|ACZ73646.1| glycine-rich protein precursor [Nicotiana tabacum]

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/135 (47%), Positives = 74/135 (54%), Gaps = 27/135 (20%)

Query: 1   MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNGGYGGY 60
           MGSK FL LGL ++   LISSE  A +LAETSN  + + E     NGVD           
Sbjct: 1   MGSKAFLFLGLCLAFFFLISSEVVAGELAETSNPMKLDNE-----NGVD----------- 44

Query: 61  PGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGC-RCCSY 119
              GRGGY    G G  G       GG G GG G+    CRYGCC +GY   GC RCCSY
Sbjct: 45  -VDGRGGYNDVGGDGYYG-------GGRGRGGGGYKRRGCRYGCCRKGY--NGCKRCCSY 94

Query: 120 AGEAVNAQTEAEPQN 134
           AGEA++  TEA+P N
Sbjct: 95  AGEAMDKVTEAQPHN 109

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6723687|emb|CAB67122.1| cell wall protein [Nicotiana tabacum] gi|270313156|gb|ACZ73645.1| glycine-rich protein precursor [Nicotiana tabacum]

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 68/135 (50%), Gaps = 30/135 (22%)

Query: 1   MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNGGYGGY 60
           MGSK FL LGL ++I  LIS E  A +LAETSN  + + E        ++  ++      
Sbjct: 1   MGSKAFLFLGLFLAIFFLISFEVVAAELAETSNSMKSDNE--------NEVHFD------ 46

Query: 61  PGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGC-RCCSY 119
              GR GY G    G  G G   G    G          CRYGCC +GY   GC RCCSY
Sbjct: 47  ---GRSGYNGIGNDGYYGGGHGGGYKRRG----------CRYGCCRKGY--NGCKRCCSY 91

Query: 120 AGEAVNAQTEAEPQN 134
           AGEA++  TE +P N
Sbjct: 92  AGEAMDKVTEVQPHN 106

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506358|gb|AFK41245.1| unknown [Lotus japonicus]

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/140 (54%), Positives = 86/140 (61%), Gaps = 8/140 (5%)

Query: 1   MGSK-VFLMLGLLVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNGGYGG 59
           MGSK   L+LGLL ++VLLI SE AARDL E S+D +K  EV  ETN V+DAKY GGY G
Sbjct: 1   MGSKKAILILGLL-AVVLLIVSEVAARDLTEASSDSKKT-EVVEETNEVNDAKYGGGYSG 58

Query: 60  YPGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCR-----YGCCGRGYYGRGC 114
             G G G   G+ G G GGY G  G  G+GG G G G G        +GCC  GY G   
Sbjct: 59  GGGRGGGYDPGHGGHGGGGYYGGGGGRGHGGRGGGGGRGGGGGGYCRHGCCDHGYRGSCR 118

Query: 115 RCCSYAGEAVNAQTEAEPQN 134
           RCC YAGEAV AQT  + QN
Sbjct: 119 RCCHYAGEAVAAQTADKTQN 138

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493011|ref|XP_003616794.1| hypothetical protein MTR_5g084330 [Medicago truncatula] gi|355518129|gb|AES99752.1| hypothetical protein MTR_5g084330 [Medicago truncatula]

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/116 (52%), Positives = 69/116 (59%), Gaps = 3/116 (2%)

Query: 20  SSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNGGYGGYPGGGRGGYGGYPG-GGRGG 78
           SSE +ARDL E S++ QK  E   +TN ++DAKY    GGYPG G GG  G      RGG
Sbjct: 20  SSEVSARDLTEASSNTQK--EADDQTNELNDAKYGSYGGGYPGRGGGGNYGGGYPRNRGG 77

Query: 79  YGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGCRCCSYAGEAVNAQTEAEPQN 134
           Y G  G    GG     GG YCRYGCCG  YYG   +CCSYAGEAV  QTE   +N
Sbjct: 78  YPGNRGGNYGGGYPGNRGGNYCRYGCCGDRYYGSCRKCCSYAGEAVAMQTENNTRN 133

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270313162|gb|ACZ73648.1| glycine-rich protein precursor [Nicotiana tabacum]

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 63/135 (46%), Gaps = 22/135 (16%)

Query: 1   MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNGGYGGY 60
           MGSK FL LGL ++I  LISSE  A +LAE SN  + + E     N V      G  G  
Sbjct: 1   MGSKAFLFLGLCLAIYFLISSEVVAAELAEISNSMKLDNE-----NEVHVGGRGGYNGVG 55

Query: 61  PGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGC-RCCSY 119
             G  GG  G     R  +     R              CRYGCC +GY   GC RCCSY
Sbjct: 56  GDGHHGGGRGRVVRRRRRHRYIIRR--------------CRYGCCKKGY--NGCKRCCSY 99

Query: 120 AGEAVNAQTEAEPQN 134
           AGEA +   EA P N
Sbjct: 100 AGEATDKVIEALPHN 114

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224560|ref|NP_178622.1| glycine-rich protein [Arabidopsis thaliana] gi|4581170|gb|AAD24653.1| putative glycine-rich protein [Arabidopsis thaliana] gi|15215618|gb|AAK91354.1| At2g05540/T20G20.11 [Arabidopsis thaliana] gi|15529157|gb|AAK97673.1| At2g05540/T20G20.11 [Arabidopsis thaliana] gi|20334894|gb|AAM16203.1| At2g05540/T20G20.11 [Arabidopsis thaliana] gi|330250858|gb|AEC05952.1| glycine-rich protein [Arabidopsis thaliana]

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 70/135 (51%), Gaps = 5/135 (3%)

Query: 1   MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQKN--GEVAGETNGVDDAKYNGGYG 58
           M SK  L L L+V  VLLI+SE  ARDLAE S + + N   EV              G  
Sbjct: 1   MASKALLFLSLIV--VLLIASEVVARDLAEKSAEQKNNERDEVKQTEQFGGFPGGGYGGF 58

Query: 59  GYPGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGCRCCS 118
              G G    GGY   G G      G G  GGG    GGGYCRYGCC RGYYG   RCC+
Sbjct: 59  PGGGYGGNPGGGYGNRGGGYRNRDGGYGNRGGGYGNRGGGYCRYGCCYRGYYGGCFRCCA 118

Query: 119 YAGEAVNAQTEA-EP 132
           YAG+AV  Q ++ EP
Sbjct: 119 YAGQAVQTQPQSTEP 133

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782905|emb|CAN72295.1| hypothetical protein VITISV_041009 [Vitis vinifera]

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 48/66 (72%), Gaps = 2/66 (3%)

Query: 1  MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNGGYGGY 60
          MGSK F+ L LL +++LLISSE AARDLAETS + +K  E A +TNGVDDAKY G  GG 
Sbjct: 1  MGSKAFVFLALLWAVLLLISSEVAARDLAETSTEQEKT-EAAAKTNGVDDAKYPGN-GGP 58

Query: 61 PGGGRG 66
          P  G G
Sbjct: 59 PAMGYG 64

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT2G05540	glycine-rich protein; glycine-rich protein; LOCATED IN- endomembrane system; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- 9 growth stages; CONTAINS InterPro DOMAIN/s- Glycine rich (InterPro-IPR010800); Has 20361 Blast hits to 7141 proteins in 685 species- Archae - 4; Bacteria - 2947; Metazoa - 9104; Fungi - 1634; Plants - 4601; Viruses - 106; Other Eukaryotes - 1965 (source- NCBI BLink). (135 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	GLP6	GLP6 (GERMIN-LIKE PROTEIN 6); manganese ion binding / nutrient reservoir; germin-like protein ( [...] (130 aa)							•		0.790
	AT5G18470	curculin-like (mannose-binding) lectin family protein; curculin-like (mannose-binding) lectin f [...] (413 aa)							•		0.790
	AT5G03350	legume lectin family protein; legume lectin family protein; FUNCTIONS IN- carbohydrate binding, [...] (274 aa)							•		0.659
	SEN1	SEN1 (SENESCENCE 1); Senescence-associated gene that is strongly induced by phosphate starvatio [...] (182 aa)				•					0.635
	ASN1	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1); asparagine synthase (glutamine-hydrolyzing); [...] (584 aa)				•			•		0.617
	AT2G15960	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (77 aa)				•					0.546
	MIOX2	MIOX2 (MYO-INOSITOL OXYGENASE 2); inositol oxygenase; Encodes a myo-inositol oxygenase family g [...] (317 aa)							•		0.539
	MIOX4	MIOX4; inositol oxygenase; Encodes a myo-inositol oxygenase. ; Involved in the biosynthesis of [...] (317 aa)							•		0.504
	J8	J8; heat shock protein binding / unfolded protein binding; J8 mRNA, nuclear gene encoding plast [...] (163 aa)				•					0.502
	AT2G33830	dormancy/auxin associated family protein; dormancy/auxin associated family protein; LOCATED IN- [...] (108 aa)				•					0.481

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	4e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	5e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	2e-05
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	5e-05
TIGR02209	85	TIGR02209, ftsL_broad, cell division protein FtsL	5e-04
PTZ00110	545	PTZ00110, PTZ00110, helicase; Provisional	0.002
PRK06958	182	PRK06958, PRK06958, single-stranded DNA-binding pr	0.004

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 25/44 (56%), Positives = 26/44 (59%)

Query: 55 GGYGGYPGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGG 98
          GG+GG  GGGRGG GG   GG G  GG  G  G G GG G G G
Sbjct: 4  GGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRG 47

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 28/52 (53%), Positives = 28/52 (53%)

Query: 62  GGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRG 113
           GG  GG GG  GGG GG  G  GRGG  GGGRG G G    G  G G  G G
Sbjct: 4   GGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPG 55

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 27/44 (61%), Positives = 28/44 (63%)

Query: 55 GGYGGYPGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGG 98
          G  GG+ GG  GG GG  GGGRGG G   GRGG  G GRG GGG
Sbjct: 1  GMGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGG 44

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 24/44 (54%), Positives = 24/44 (54%)

Query: 55 GGYGGYPGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGG 98
          GG GG  GGGRGG G   G G G   G  G GG  GGG G G G
Sbjct: 12 GGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPG 55

Length = 293

>gnl|CDD|131264 TIGR02209, ftsL_broad, cell division protein FtsL

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 5  VFLMLGLLVSIVLLISSEAAARDL------AETSNDDQKN 38
          V L+L +LVS + ++S++   R L       +   D  + 
Sbjct: 6  VLLLLAILVSAISVVSAQHQTRQLNNELQKLQLEIDKLQK 45

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species [Cellular processes, Cell division]. Length = 85

>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 53  YNGGYGGYPGGGRGGYGGYPGGGRGGYGGY-PGRGGYGGGGRGHGGGYCRYGCCGRG 108
            N    G        YG Y    +  YGG+ PG G Y GG  G G         G+ 
Sbjct: 19  NNYNSYGPYPDSSNPYGNYQANHQDNYGGFRPGYGNYSGGYGGFGMNSYGSSTLGKR 75

Length = 545

>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 26/44 (59%), Positives = 26/44 (59%)

Query: 55  GGYGGYPGGGRGGYGGYPGGGRGGYGGYPGRGGYGGGGRGHGGG 98
           G  GG  GG  GGYGG  GGG GGYGG    GG GG   G GGG
Sbjct: 113 GSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGG 156

Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	99.88
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	98.51
PF03058	93	Sar8_2: Sar8.2 family; InterPro: IPR004297 Members	97.97
PF15240	179	Pro-rich: Proline-rich	92.79
COG4371	334	Predicted membrane protein [Function unknown]	92.31
PF10731	65	Anophelin: Thrombin inhibitor from mosquito; Inter	90.32
PF05887	143	Trypan_PARP: Procyclic acidic repetitive protein (	89.99
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	84.24
PHA02291	132	hypothetical protein	81.85
PF03896	285	TRAP_alpha: Translocon-associated protein (TRAP),	80.19

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=99.88  E-value=2.3e-22  Score=142.95  Aligned_cols=47  Identities=60%  Similarity=0.868  Sum_probs=37.8

Q ss_pred             CchhHHHHHHHHHHHHHHhhhHHHHHHHHHhccccccCccccCcccccCCCccCC
Q 032762            1 MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNG   55 (134)
Q Consensus         1 M~sK~~llL~l~la~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~gG   55 (134)
                      ||||+||||+||||+||||||||+||+++++.+        ++++++|+|+++++
T Consensus         1 MaSK~~llL~l~LA~lLlisSevaa~~~~~~~~--------~~~~~~v~~~~~~g   47 (95)
T PF07172_consen    1 MASKAFLLLGLLLAALLLISSEVAARELEETEK--------EEEENEVQDDKYGG   47 (95)
T ss_pred             CchhHHHHHHHHHHHHHHHHhhhhhHHhhhccc--------cccCCCCCccccCC
Confidence            999999999999999999999999999843322        23456788887743

Some of them may be involved in resistance to environmental stress [].

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=98.51  E-value=9.8e-07  Score=62.83  Aligned_cols=28  Identities=18%  Similarity=0.157  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhcc
Q 032762            6 FLMLGLLVSIVLLISSEAAARDLAETSN   33 (134)
Q Consensus         6 ~llL~l~la~~LlvSSevaArelaE~~~   33 (134)
                      .|||++||+++..+|++..+++.+++++
T Consensus        10 ~l~LA~lLlisSevaa~~~~~~~~~~~~   37 (95)
T PF07172_consen   10 GLLLAALLLISSEVAARELEETEKEEEE   37 (95)
T ss_pred             HHHHHHHHHHHhhhhhHHhhhccccccC
Confidence            4667777778888887666444333333

Some of them may be involved in resistance to environmental stress [].

>PF03058 Sar8_2: Sar8

Probab=97.97  E-value=7.2e-06  Score=58.15  Aligned_cols=33  Identities=42%  Similarity=0.562  Sum_probs=27.6

Q ss_pred             CchhHHHHHHHHHHHHH-HhhhHHHHHHHHHhcc
Q 032762            1 MGSKVFLMLGLLVSIVL-LISSEAAARDLAETSN   33 (134)
Q Consensus         1 M~sK~~llL~l~la~~L-lvSSevaArelaE~~~   33 (134)
                      |+||+-|||.|.||++| .|||+|.|||..|++.
T Consensus         1 M~~Ktnlfl~lSLailLmIISSqv~AREms~A~a   34 (93)
T PF03058_consen    1 MVSKTNLFLCLSLAILLMIISSQVDAREMSKASA   34 (93)
T ss_pred             CcchhhhHHHHHHHHHHHHHhhHHHHHHHhcccc
Confidence            99999999999886654 6888999999887764

2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].

>PF15240 Pro-rich: Proline-rich

Probab=92.79  E-value=0.058  Score=42.62  Aligned_cols=17  Identities=35%  Similarity=0.421  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHhhhHHH
Q 032762            8 MLGLLVSIVLLISSEAA   24 (134)
Q Consensus         8 lL~l~la~~LlvSSeva   24 (134)
                      ||+||.|+||.+||+..
T Consensus         2 LlVLLSvALLALSSAQ~   18 (179)
T PF15240_consen    2 LLVLLSVALLALSSAQS   18 (179)
T ss_pred             hhHHHHHHHHHhhhccc
Confidence            56666677777887654

>COG4371 Predicted membrane protein [Function unknown]

Probab=92.31  E-value=0.59  Score=39.37  Aligned_cols=17  Identities=12%  Similarity=0.397  Sum_probs=9.7

Q ss_pred             hHHHHHHHHHHHHHHhh
Q 032762            4 KVFLMLGLLVSIVLLIS   20 (134)
Q Consensus         4 K~~llL~l~la~~LlvS   20 (134)
                      |.++++.++||+.|++.
T Consensus        23 gT~~~~gfvLa~al~~~   39 (334)
T COG4371          23 GTLALGGFVLAAALFVP   39 (334)
T ss_pred             hhHHHHHHHHHHHHcCC
Confidence            44556666666655543

>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen

Probab=90.32  E-value=0.25  Score=32.85  Aligned_cols=14  Identities=36%  Similarity=0.446  Sum_probs=8.6

Q ss_pred             CchhHHHHHHHHHH
Q 032762            1 MGSKVFLMLGLLVS   14 (134)
Q Consensus         1 M~sK~~llL~l~la   14 (134)
                      ||||.||+-.|.+|
T Consensus         1 MA~Kl~vialLC~a   14 (65)
T PF10731_consen    1 MASKLIVIALLCVA   14 (65)
T ss_pred             CcchhhHHHHHHHH
Confidence            99986665444333

The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.

>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences

Probab=89.99  E-value=0.091  Score=39.98  Aligned_cols=29  Identities=17%  Similarity=0.203  Sum_probs=0.0

Q ss_pred             CchhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 032762            1 MGSKVFLMLGLLVSIVLLISSEAAARDLA   29 (134)
Q Consensus         1 M~sK~~llL~l~la~~LlvSSevaArela   29 (134)
                      |+-+.|+||+|||.+.+||+...+|+.+.
T Consensus         1 m~pr~l~~LavLL~~A~Lfag~g~AaAad   29 (143)
T PF05887_consen    1 MTPRHLCLLAVLLFGAALFAGVGSAAAAD   29 (143)
T ss_dssp             -----------------------------
T ss_pred             Ccccccccccccccccccccccccccccc
Confidence            77888888888777777777766555443

The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=84.24  E-value=1.2  Score=33.15  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=23.6

Q ss_pred             HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762           15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK   52 (134)
Q Consensus        15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak   52 (134)
                      +||.+.++++|+.++++++ ..   ++..+.+.|+.++
T Consensus        79 aFV~F~~~e~A~~Al~~ln-g~---~i~Gr~l~V~~a~  112 (144)
T PLN03134         79 GFVNFNDEGAATAAISEMD-GK---ELNGRHIRVNPAN  112 (144)
T ss_pred             EEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEeCC
Confidence            4677888888888888776 32   4566677776553

>PHA02291 hypothetical protein

Probab=81.85  E-value=1.3  Score=32.91  Aligned_cols=15  Identities=27%  Similarity=0.344  Sum_probs=10.5

Q ss_pred             CchhHHHHHHHHHHH
Q 032762            1 MGSKVFLMLGLLVSI   15 (134)
Q Consensus         1 M~sK~~llL~l~la~   15 (134)
                      |.||+.|+.+|++++
T Consensus         1 MS~K~~iFYiL~~~V   15 (132)
T PHA02291          1 MSRKASIFYILVVIV   15 (132)
T ss_pred             CCcchhhHHHHHHHH
Confidence            889987776665544

>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane []

Probab=80.19  E-value=1.2  Score=37.40  Aligned_cols=18  Identities=28%  Similarity=0.364  Sum_probs=9.4

Q ss_pred             CchhHHHHHHHHHHHHHH
Q 032762            1 MGSKVFLMLGLLVSIVLL   18 (134)
Q Consensus         1 M~sK~~llL~l~la~~Ll   18 (134)
                      |.||.+||+.|+|.+.||
T Consensus         3 ~~~~~~ll~ll~~p~~l~   20 (285)
T PF03896_consen    3 FLSRLILLALLVFPATLL   20 (285)
T ss_pred             chhhHHHHHHHHHHHHHH
Confidence            346666665554444444

; GO: 0005783 endoplasmic reticulum

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00