Citrus Sinensis ID: 032764


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
MEDRHSVNSPRRILSFSKRRRATVSFLDQDDRTYSGFGPKTSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLNKIRVHQRSFFILTGGR
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccEEEccccc
cccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccccEEEEcccc
medrhsvnsprriLSFSKRrratvsfldqddrtysgfgpktsevyGFVGSITTVVATGIFLVWAYVPERCLNAIGiyyypsrywalaVPAYAMVTLVLALVFYIGlnfmstpsptslnkIRVHQRSFFILTGGR
medrhsvnsprrilsfskrrratvsfldqddrtysgfgpktsevYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMStpsptslnkirvHQRSFFILTGGR
MEDRHSVNSPRRILSFSKRRRATVSFLDQDDRTYSGFGPKTSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLNKIRVHQRSFFILTGGR
*************************FL****RTYSGFGPKTSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLNKIRVHQRSFFIL****
*******************************************VYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLNKIRVHQRSFFIL****
***********RILSFSKRRRATVSFLDQDDRTYSGFGPKTSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLNKIRVHQRSFFILTGGR
**********************************SGFGPKTSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLNKIRVHQRSFFILT***
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEDRHSVNSPRRILSFSKRRRATVSFLDQDDRTYSGFGPKTSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLNKIRVHQRSFFILTGGR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query134 2.2.26 [Sep-21-2011]
O64792137 Phosphatidylinositol N-ac no no 0.619 0.605 0.746 5e-32
Q9JHG1132 Phosphatidylinositol N-ac no no 0.574 0.583 0.415 3e-13
P57054158 Phosphatidylinositol N-ac yes no 0.574 0.487 0.389 1e-12
Q5R946134 Phosphatidylinositol N-ac yes no 0.574 0.574 0.389 1e-12
O13904195 Meiotically up-regulated yes no 0.671 0.461 0.329 4e-07
>sp|O64792|PIGP_ARATH Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Arabidopsis thaliana GN=At1g61280 PE=2 SV=1 Back     alignment and function desciption
 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 74/83 (89%)

Query: 38  GPKTSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLV 97
           GPKTSEVYGFVGSI+ VVAT IFL+W YVP++ L +IGIYYYPS+YWA+A+P Y+MVTL+
Sbjct: 10  GPKTSEVYGFVGSISIVVATVIFLIWGYVPDKFLESIGIYYYPSKYWAMAMPMYSMVTLL 69

Query: 98  LALVFYIGLNFMSTPSPTSLNKI 120
           +ALVFYIGLNFMST  PTSLN +
Sbjct: 70  VALVFYIGLNFMSTSKPTSLNTL 92




Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 9EC: 8
>sp|Q9JHG1|PIGP_MOUSE Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Mus musculus GN=Pigp PE=2 SV=1 Back     alignment and function description
>sp|P57054|PIGP_HUMAN Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Homo sapiens GN=PIGP PE=1 SV=3 Back     alignment and function description
>sp|Q5R946|PIGP_PONAB Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Pongo abelii GN=PIGP PE=2 SV=1 Back     alignment and function description
>sp|O13904|MUG84_SCHPO Meiotically up-regulated gene 84 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug84 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query134
225460050178 PREDICTED: phosphatidylinositol N-acetyl 0.888 0.668 0.761 5e-46
297734820166 unnamed protein product [Vitis vinifera] 0.888 0.716 0.761 7e-46
255558806168 phosphatidylinositol n-acetylglucosaminy 0.888 0.708 0.722 2e-44
359489110166 PREDICTED: phosphatidylinositol N-acetyl 0.888 0.716 0.730 1e-42
356549114167 PREDICTED: phosphatidylinositol N-acetyl 0.888 0.712 0.730 2e-42
147828280166 hypothetical protein VITISV_039024 [Viti 0.888 0.716 0.730 2e-42
356555518167 PREDICTED: phosphatidylinositol N-acetyl 0.888 0.712 0.706 3e-40
224137206177 predicted protein [Populus trichocarpa] 0.843 0.638 0.689 3e-39
240254610181 Phosphatidylinositol N-acetylglucosaminy 0.895 0.662 0.650 3e-38
449432346159 PREDICTED: phosphatidylinositol N-acetyl 0.843 0.710 0.642 1e-35
>gi|225460050|ref|XP_002273786.1| PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P [Vitis vinifera] Back     alignment and taxonomy information
 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 96/126 (76%), Positives = 109/126 (86%), Gaps = 7/126 (5%)

Query: 1   MEDRHSVNSPRRILSFSKRRRATVSFLDQDDRTYSGFG------PKTSEVYGFVGSITTV 54
           MEDRHSV+SPRRILS SK+RRATVSF D DD++ SGFG      PK +EVYGFVGSI+TV
Sbjct: 13  MEDRHSVSSPRRILSLSKQRRATVSFPDPDDKS-SGFGVAGEHGPKPAEVYGFVGSISTV 71

Query: 55  VATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMSTPSP 114
           VAT IFLVWAYVPE  L++IGI+YYP+R WALAVPAYAMVT+VLAL FYIGLNFM+TPSP
Sbjct: 72  VATVIFLVWAYVPEHWLHSIGIFYYPNRQWALAVPAYAMVTVVLALGFYIGLNFMATPSP 131

Query: 115 TSLNKI 120
           TSLN +
Sbjct: 132 TSLNTM 137




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734820|emb|CBI17054.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255558806|ref|XP_002520426.1| phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis] gi|223540268|gb|EEF41839.1| phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359489110|ref|XP_002264551.2| PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like isoform 1 [Vitis vinifera] gi|359489112|ref|XP_003633877.1| PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like isoform 2 [Vitis vinifera] gi|297744833|emb|CBI38101.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356549114|ref|XP_003542942.1| PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Glycine max] Back     alignment and taxonomy information
>gi|147828280|emb|CAN77710.1| hypothetical protein VITISV_039024 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356555518|ref|XP_003546078.1| PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Glycine max] Back     alignment and taxonomy information
>gi|224137206|ref|XP_002327068.1| predicted protein [Populus trichocarpa] gi|222835383|gb|EEE73818.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|240254610|ref|NP_001118477.4| Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit [Arabidopsis thaliana] gi|330254584|gb|AEC09678.1| Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449432346|ref|XP_004133960.1| PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Cucumis sativus] gi|449515544|ref|XP_004164809.1| PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query134
TAIR|locus:4515102966181 AT2G39445 "AT2G39445" [Arabido 0.895 0.662 0.658 8.7e-40
TAIR|locus:2197755137 AT1G61280 "AT1G61280" [Arabido 0.619 0.605 0.746 4.2e-31
UNIPROTKB|F1SGV8130 PIGP "Uncharacterized protein" 0.552 0.569 0.441 5.4e-15
MGI|MGI:1860433132 Pigp "phosphatidylinositol gly 0.574 0.583 0.415 8.8e-15
RGD|1307205160 Pigp "phosphatidylinositol gly 0.574 0.481 0.415 8.8e-15
UNIPROTKB|P57054158 PIGP "Phosphatidylinositol N-a 0.574 0.487 0.389 3e-14
DICTYBASE|DDB_G0272006 602 DDB_G0272006 "unknown" [Dictyo 0.597 0.132 0.412 3.4e-14
UNIPROTKB|F1P0U0148 PIGP "Uncharacterized protein" 0.813 0.736 0.339 4.4e-13
UNIPROTKB|G4MSD7277 MGG_04460 "PIG-P domain-contai 0.5 0.241 0.486 7.5e-13
ASPGD|ASPL0000016851357 pigP [Emericella nidulans (tax 0.514 0.193 0.394 5.6e-10
TAIR|locus:4515102966 AT2G39445 "AT2G39445" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 83/126 (65%), Positives = 98/126 (77%)

Query:     1 MEDRHSVNSPRRILSFSKRRRATVSFLDQDDRTYSGF------GPKTSEVYGFVGSITTV 54
             +E+ HSV+SPRR+LSFSKR +    F D D R  S F      GPK SEVYGFVGSI+TV
Sbjct:    13 IEEAHSVSSPRRVLSFSKRNKQKPGFQDTDSRRSSSFRASEVHGPKPSEVYGFVGSISTV 72

Query:    55 VATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMSTPSP 114
             VAT IFLVWAYVP++ L +IGI+YYPSRYW LA+P Y MVTL+LAL FYIGLNF++TP P
Sbjct:    73 VATVIFLVWAYVPDKLLESIGIHYYPSRYWVLAMPTYLMVTLMLALAFYIGLNFIATPPP 132

Query:   115 TSLNKI 120
             TSLN +
Sbjct:   133 TSLNTL 138




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2197755 AT1G61280 "AT1G61280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGV8 PIGP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1860433 Pigp "phosphatidylinositol glycan anchor biosynthesis, class P" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307205 Pigp "phosphatidylinositol glycan anchor biosynthesis, class P" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P57054 PIGP "Phosphatidylinositol N-acetylglucosaminyltransferase subunit P" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272006 DDB_G0272006 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0U0 PIGP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G4MSD7 MGG_04460 "PIG-P domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000016851 pigP [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.4.1.1980.824
3rd Layer2.4.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00032065001
SubName- Full=Chromosome chr18 scaffold_61, whole genome shotgun sequence; (178 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00036124001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (225 aa)
       0.800
GSVIVG00015680001
SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (80 aa)
     0.497
GSVIVG00024142001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (475 aa)
     0.471

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query134
pfam08510123 pfam08510, PIG-P, PIG-P 1e-30
>gnl|CDD|219875 pfam08510, PIG-P, PIG-P Back     alignment and domain information
 Score =  105 bits (265), Expect = 1e-30
 Identities = 35/81 (43%), Positives = 52/81 (64%)

Query: 40  KTSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLA 99
            T E YGFV  I + +   ++L+WA++P+  L+++GI YYPSRYWALA+P Y ++ ++ A
Sbjct: 1   PTREYYGFVLYILSTLLFVLYLLWAFLPDPVLHSLGITYYPSRYWALAIPIYLLMAMLYA 60

Query: 100 LVFYIGLNFMSTPSPTSLNKI 120
            V Y   N + TP   SL  I
Sbjct: 61  YVGYALYNLVLTPPLDSLETI 81


PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis. Length = 123

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 134
PF08510126 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphati 100.0
KOG2257135 consensus N-acetylglucosaminyltransferase complex, 100.0
PF0729778 DPM2: Dolichol phosphate-mannose biosynthesis regu 97.67
KOG348881 consensus Dolichol phosphate-mannose regulatory pr 93.89
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [] Back     alignment and domain information
Probab=100.00  E-value=2.7e-39  Score=240.31  Aligned_cols=92  Identities=35%  Similarity=0.682  Sum_probs=89.3

Q ss_pred             cceeehhHHHHHHHHHHHHHHhhhccChhHHHHhCceeccCcchhhhHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 032764           41 TSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLNKI  120 (134)
Q Consensus        41 ~~e~YGFv~~i~s~~~~~lyllWa~lP~~~L~~lgity~P~kyWAlaiP~~ll~~~l~~~~~Y~~~N~~~Tppldsl~tI  120 (134)
                      ++|+|||++|++++++|++|++|||+||++||++|++||||||||+|+|||++|++++++++|.++|+++|||+||++||
T Consensus         2 ~~e~YGFv~~i~s~~~~~lyl~Wa~lP~~~L~~lgity~P~kyWAlaiP~~~l~~~l~~~~~y~~~N~~~T~pld~~~ti   81 (126)
T PF08510_consen    2 SREYYGFVLYILSTVAFVLYLLWAFLPDEWLHSLGITYYPDKYWALAIPSWLLMAMLFTYVGYPAYNLVLTPPLDSLRTI   81 (126)
T ss_pred             CceeeehHHHHHHHHHHHHHHHHHhcCHHHHHhcCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccee
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcceEEecC
Q 032764          121 RVHQRSFFILTG  132 (134)
Q Consensus       121 tD~~a~~~i~~~  132 (134)
                      +|+++++...++
T Consensus        82 ~D~~~~~~~~~~   93 (126)
T PF08510_consen   82 TDEYARVPDEDD   93 (126)
T ss_pred             eccccccccccc
Confidence            999999877654



>KOG2257 consensus N-acetylglucosaminyltransferase complex, subunit PIG-P, required for phosphatidylinositol biosynthesis [Function unknown] Back     alignment and domain information
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins Back     alignment and domain information
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query134
d2axte182 Cytochrome b559 subunit alpha, PsbE {Thermosynecho 81.87
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Cytochrome b559 subunits
family: Cytochrome b559 subunits
domain: Cytochrome b559 subunit alpha, PsbE
species: Thermosynechococcus elongatus [TaxId: 146786]
Probab=81.87  E-value=0.61  Score=30.54  Aligned_cols=36  Identities=25%  Similarity=0.596  Sum_probs=27.9

Q ss_pred             cchh---hhHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 032764           82 RYWA---LAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLN  118 (134)
Q Consensus        82 kyWA---laiP~~ll~~~l~~~~~Y~~~N~~~Tppldsl~  118 (134)
                      |||.   |.||++++.+.+|...+ ++|+..-||..|..-
T Consensus        16 RYWvIHsiTIPslFiaGwlFVstG-LAYdvFGtPrPneYf   54 (82)
T d2axte1          16 RYWVIHSITIPALFIAGWLFVSTG-LAYDVFGTPRPDSYY   54 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT-HHHHHTTCCCTTCSS
T ss_pred             eEEEEEeecccHHHHhhhhheecc-cchhhcCCCCccccc
Confidence            7885   68999999988776544 477888888888754