Citrus Sinensis ID: 032786

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSCFCPLIRQ
Secondary Structure (PSIPRED)
ccccHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MDFSPLTDALASKSYEKIADICDDLMLKVAAEgivfqdewpYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFsgnstprgcfscfcplirq
Flexible Loop (DISEMBL)
MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFsgnstprgcFSCFCPLIRQ
Low Complexity Region (SEG)
MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSCFCPLIRQ
Disordered region (IsUnstruct)
*************SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSCFCPLI**
Disordered Region (DISOPRED)
*****LTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSCFCPLIRQ
Disordered Region (DISEMBL)
********ALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSCFCPLIRQ
Disordered Region (DISPRO)
*DFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSCFCPLIRQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSCFCPLIRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
P43255	197	COP9 signalosome complex	yes	no	0.909	0.614	0.685	1e-45
Q5RF54	209	COP9 signalosome complex	yes	no	0.812	0.516	0.359	1e-14
Q99627	209	COP9 signalosome complex	yes	no	0.812	0.516	0.359	1e-14
Q6P4Z9	209	COP9 signalosome complex	yes	no	0.812	0.516	0.359	1e-14
Q8VBV7	209	COP9 signalosome complex	yes	no	0.812	0.516	0.359	1e-14
Q6GQA6	195	COP9 signalosome complex	N/A	no	0.578	0.394	0.410	1e-13
Q7ZUZ0	191	COP9 signalosome complex	yes	no	0.578	0.403	0.389	6e-13
Q6P637	193	COP9 signalosome complex	yes	no	0.593	0.409	0.395	4e-12
P68396	23	COP9 signalosome complex	N/A	no	0.172	1.0	0.869	2e-05

>sp|P43255|CSN8_ARATH COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8 PE=1 SV=1

 Score =  181 bits (460), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 102/121 (84%)

Query: 1   MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
           MD SP+ +ALA+KS++KIADICD LML+VA+EGI + D+WPY IHLLGY+YV+D +SARF
Sbjct: 1   MDLSPVKEALAAKSFDKIADICDTLMLQVASEGIEYHDDWPYAIHLLGYFYVDDCDSARF 60

Query: 61  LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTP 120
           LWK IP+ IK+ + EVVAAW IGQ LWT DYAGVY+AIRG+DWSQEA+ +VAAFS   T 
Sbjct: 61  LWKRIPTAIKERKPEVVAAWGIGQKLWTHDYAGVYEAIRGYDWSQEAKDMVAAFSDLYTK 120

Query: 121 R 121
           R
Sbjct: 121 R 121

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of IAA6 by regulating the activity of the Ubl ligase SCF-TIR complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5RF54|CSN8_PONAB COP9 signalosome complex subunit 8 OS=Pongo abelii GN=COPS8 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 14  SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
           S++K+ D C++  L+ A  GI      P    LL  Y + ND+N+AR+LWK IP  IK +
Sbjct: 12  SFKKLLDQCENQELE-APGGIATP---PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSA 67

Query: 73  RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSC 126
            +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A   ++T R  F+ 
Sbjct: 68  NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALR-DATRRRAFAL 120

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively.

Pongo abelii (taxid: 9601)

>sp|Q99627|CSN8_HUMAN COP9 signalosome complex subunit 8 OS=Homo sapiens GN=COPS8 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 14  SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
           S++K+ D C++  L+ A  GI      P    LL  Y + ND+N+AR+LWK IP  IK +
Sbjct: 12  SFKKLLDQCENQELE-APGGIATP---PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSA 67

Query: 73  RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSC 126
            +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A   ++T R  F+ 
Sbjct: 68  NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALR-DATRRRAFAL 120

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively.

Homo sapiens (taxid: 9606)

>sp|Q6P4Z9|CSN8_RAT COP9 signalosome complex subunit 8 OS=Rattus norvegicus GN=Cops8 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 6/114 (5%)

Query: 14  SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
           S+ K+ D C++  L+ A  GI      P    LL  Y + ND+N+AR+LWK IP  IK +
Sbjct: 12  SFRKLLDQCENQELE-APGGIATP---PVYGQLLALYLLQNDMNNARYLWKRIPPAIKSA 67

Query: 73  RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSC 126
            +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A   ++T R  F+ 
Sbjct: 68  NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALR-DATRRRAFAL 120

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively.

Rattus norvegicus (taxid: 10116)

>sp|Q8VBV7|CSN8_MOUSE COP9 signalosome complex subunit 8 OS=Mus musculus GN=Cops8 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 6/114 (5%)

Query: 14  SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
           S+ K+ D C++  L+ A  GI      P    LL  Y + ND+N+AR+LWK IP  IK +
Sbjct: 12  SFRKLLDQCENQELE-APGGIATP---PVYGQLLALYLLQNDMNNARYLWKRIPPAIKSA 67

Query: 73  RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSC 126
            +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A   ++T R  F+ 
Sbjct: 68  NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALR-DATRRRAFAL 120

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively.

Mus musculus (taxid: 10090)

>sp|Q6GQA6|CSN8_XENLA COP9 signalosome complex subunit 8 OS=Xenopus laevis GN=csn8 PE=2 SV=2

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 45  HLLGYYYV-NDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDW 103
            LL  Y + ND+N+AR+LWK IPS IK S +E+   W++GQ +W RD+ G+Y +I  + W
Sbjct: 41  QLLALYLLHNDLNNARYLWKRIPSAIKSSHSELGGIWEVGQKIWQRDFPGIYTSISAYQW 100

Query: 104 SQEAQALVAAFSGNSTPR 121
           S+  Q ++ A    +  R
Sbjct: 101 SENIQQIMEAVRDATQQR 118

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity.

Xenopus laevis (taxid: 8355)

>sp|Q7ZUZ0|CSN8_DANRE COP9 signalosome complex subunit 8 OS=Danio rerio GN=cops8 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query: 46  LLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQ 105
           L+ Y   ND+N+AR+LWK IP  IK +  E+ A W +GQ +W RD+ G+Y AI  + WS+
Sbjct: 39  LVLYLLHNDMNNARYLWKRIPQAIKTANPEMAAIWAVGQRIWQRDFPGIYSAIAAYQWSE 98

Query: 106 EAQALVAAFSGNSTPRG 122
               ++ A   ++  R 
Sbjct: 99  SILPVMEALRESTRRRA 115

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity.

Danio rerio (taxid: 7955)

>sp|Q6P637|CSN8_XENTR COP9 signalosome complex subunit 8 OS=Xenopus tropicalis GN=csn8 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)

Query: 45  HLLGYYYV-NDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDW 103
            LL  Y + ND+N+AR+LWK IP  IK + +E+   W++GQ +W RD+ G+Y +I    W
Sbjct: 39  QLLALYLLHNDMNNARYLWKRIPPAIKSAHSELGGIWEVGQKIWQRDFPGIYTSISACQW 98

Query: 104 SQEAQALVAAFSGNSTPRGCF 124
           S+  Q ++ A   ++T R  F
Sbjct: 99  SEAIQPVMEAVR-DATRRRAF 118

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity.

Xenopus tropicalis (taxid: 8364)

>sp|P68396|CSN8_BRAOL COP9 signalosome complex subunit 8 (Fragment) OS=Brassica oleracea GN=CSN8 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/23 (86%), Positives = 23/23 (100%)

Query: 86  LWTRDYAGVYDAIRGFDWSQEAQ 108
           LWTRDYAGVY+AIRGFDWSQ+A+
Sbjct: 1   LWTRDYAGVYEAIRGFDWSQDAK 23

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes.

Brassica oleracea (taxid: 3712)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
312281795	197	unnamed protein product [Thellungiella h	0.909	0.614	0.710	2e-46
1256771	204	COP9 [Spinacia oleracea]	0.909	0.593	0.685	9e-46
449444681	197	PREDICTED: COP9 signalosome complex subu	0.864	0.583	0.739	6e-45
147798444	197	hypothetical protein VITISV_002704 [Viti	0.909	0.614	0.702	7e-45
225447785	197	PREDICTED: COP9 signalosome complex subu	0.909	0.614	0.694	1e-44
224054304	199	predicted protein [Populus trichocarpa]	0.909	0.608	0.723	1e-44
398631261	197	COP9 signalosome complex subunit 8 [Bras	0.909	0.614	0.685	2e-44
255627935	197	unknown [Glycine max]	0.864	0.583	0.721	3e-44
297800858	197	hypothetical protein ARALYDRAFT_915486 [	0.909	0.614	0.685	6e-44
15236410	197	COP9 signalosome complex subunit 8 [Arab	0.909	0.614	0.685	7e-44

>gi|312281795|dbj|BAJ33763.1| unnamed protein product [Thellungiella halophila]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 107/121 (88%)

Query: 1   MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
           MD S +T+ALA+KSY++IADICD+LML+VA+EGI F D+WPY IHLLGY+YV+D +SARF
Sbjct: 1   MDLSTVTEALAAKSYDRIADICDNLMLQVASEGISFHDDWPYAIHLLGYFYVDDCDSARF 60

Query: 61  LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTP 120
           LWK+IP+ IK+S+ EVVAAW+IGQ LWTRDYAGVY+AIRG+DWSQEA+ +VAAFS   T 
Sbjct: 61  LWKTIPTAIKESKPEVVAAWRIGQKLWTRDYAGVYEAIRGYDWSQEAKDMVAAFSDLYTK 120

Query: 121 R 121
           R
Sbjct: 121 R 121

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1256771|gb|AAA96516.1| COP9 [Spinacia oleracea]

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 103/121 (85%)

Query: 1   MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
           MDFSPLTDA+AS+SY+KIADICD+LML+V+AEGIVFQ++WPY IHLLG+ Y  DINSARF
Sbjct: 8   MDFSPLTDAIASESYDKIADICDNLMLQVSAEGIVFQNDWPYAIHLLGHIYAGDINSARF 67

Query: 61  LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTP 120
           LWKSIP  IK+S+ E++A W IGQ LWTRDYAGVY+A+R F+WS +    +AAFS N+T 
Sbjct: 68  LWKSIPIAIKESQPEIIAVWGIGQKLWTRDYAGVYEAVRSFNWSPQIHPFIAAFSDNNTK 127

Query: 121 R 121
           +
Sbjct: 128 K 128

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444681|ref|XP_004140102.1| PREDICTED: COP9 signalosome complex subunit 8-like [Cucumis sativus]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 85/115 (73%), Positives = 98/115 (85%)

Query: 1   MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
           MDF  LT+ALASKSY+KIADICDDLML+ AAEGI ++DEWPY IH LGY+YV+DINSARF
Sbjct: 1   MDFGRLTEALASKSYDKIADICDDLMLQAAAEGIAYKDEWPYAIHFLGYFYVDDINSARF 60

Query: 61  LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFS 115
           LWKSIPSTIK++R E+VA WKIGQ LW RD+ GVY+AI   DW QE Q L+AAFS
Sbjct: 61  LWKSIPSTIKENRPELVAIWKIGQKLWVRDHRGVYEAIHELDWCQEVQGLLAAFS 115

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798444|emb|CAN67908.1| hypothetical protein VITISV_002704 [Vitis vinifera]

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 101/121 (83%)

Query: 1   MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
           MDF+P+ DA+ SKSY KIADICDDLML+V+ +GI F+DEWPY IHLLG+ YV+DINSARF
Sbjct: 1   MDFTPIKDAMTSKSYGKIADICDDLMLQVSTQGIAFEDEWPYTIHLLGHIYVDDINSARF 60

Query: 61  LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTP 120
           LWKSIP  IK+ + EV AAWKIGQ LWTRDYA V++AIRGF+WS EAQ +VAAFS   T 
Sbjct: 61  LWKSIPPAIKERQPEVGAAWKIGQRLWTRDYAAVHEAIRGFEWSPEAQCIVAAFSELYTK 120

Query: 121 R 121
           +
Sbjct: 121 K 121

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447785|ref|XP_002266060.1| PREDICTED: COP9 signalosome complex subunit 8 [Vitis vinifera] gi|296081479|emb|CBI20002.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/121 (69%), Positives = 101/121 (83%)

Query: 1   MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
           MDF+P+ DA+ SKSY KIAD+CDDLML+V+ +GI F+DEWPY IHLLG+ YV+DINSARF
Sbjct: 1   MDFTPIKDAMTSKSYGKIADVCDDLMLQVSTQGIAFEDEWPYTIHLLGHIYVDDINSARF 60

Query: 61  LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTP 120
           LWKSIP  IK+ + EV AAWKIGQ LWTRDYA V++AIRGF+WS EAQ +VAAFS   T 
Sbjct: 61  LWKSIPPAIKERQPEVGAAWKIGQRLWTRDYAAVHEAIRGFEWSPEAQCIVAAFSELYTK 120

Query: 121 R 121
           +
Sbjct: 121 K 121

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054304|ref|XP_002298193.1| predicted protein [Populus trichocarpa] gi|222845451|gb|EEE82998.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/123 (72%), Positives = 101/123 (82%), Gaps = 2/123 (1%)

Query: 1   MDFSPLTDALASKSYEKIADICDDLMLKVAAE--GIVFQDEWPYVIHLLGYYYVNDINSA 58
           MDFSPLTDALASKSY KIADICDDLMLK AAE  G+ F++EWP+ IHLL + YVND NSA
Sbjct: 1   MDFSPLTDALASKSYGKIADICDDLMLKGAAEMEGVPFEEEWPFAIHLLAHIYVNDTNSA 60

Query: 59  RFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNS 118
           RFLWKSIP+ +K+ + EVVAAW IGQ LWTRDYA V++AIR FDWSQ+ Q LVAAFS   
Sbjct: 61  RFLWKSIPAAVKERQPEVVAAWGIGQRLWTRDYAAVHEAIRAFDWSQQIQPLVAAFSEVY 120

Query: 119 TPR 121
           T R
Sbjct: 121 TKR 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|398631261|gb|AFO85469.1| COP9 signalosome complex subunit 8 [Brassica napus]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 106/121 (87%)

Query: 1   MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
           MD SP+T+ALA KS++KIADICD+LML+VA+EGI F D+WPY  +LLGY+YV+D +SARF
Sbjct: 1   MDLSPVTEALAVKSFDKIADICDNLMLQVASEGISFHDDWPYFYNLLGYFYVDDCDSARF 60

Query: 61  LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTP 120
           LWK+IP+++K+S+ EVVAAW+IGQ LWTRDYAGVY+AIRG+DWS EA+ +VAAFS   T 
Sbjct: 61  LWKTIPTSVKESKPEVVAAWRIGQRLWTRDYAGVYEAIRGYDWSPEAKDMVAAFSDVYTK 120

Query: 121 R 121
           R
Sbjct: 121 R 121

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255627935|gb|ACU14312.1| unknown [Glycine max]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 99/115 (86%)

Query: 1   MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
           MDFS +  AL SKSY+K+AD+CD+LML+VAAEGI +QD+WPY IHLL + YV+DINSARF
Sbjct: 1   MDFSSVRAALDSKSYDKVADVCDNLMLQVAAEGIAYQDDWPYTIHLLSHIYVHDINSARF 60

Query: 61  LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFS 115
           LWKSIPS+IK+S+ EV A WKIGQ LW RDYAGV++ IRGFDW+QE Q LVAAFS
Sbjct: 61  LWKSIPSSIKESQPEVTAVWKIGQKLWLRDYAGVHETIRGFDWTQELQTLVAAFS 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800858|ref|XP_002868313.1| hypothetical protein ARALYDRAFT_915486 [Arabidopsis lyrata subsp. lyrata] gi|297314149|gb|EFH44572.1| hypothetical protein ARALYDRAFT_915486 [Arabidopsis lyrata subsp. lyrata]

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 103/121 (85%)

Query: 1   MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
           MD SP+ +ALA KS++KIA+ICD+LML+VA+EGI + D+WPY IHLLGY+YV+D +SARF
Sbjct: 1   MDLSPVKEALAVKSFDKIAEICDNLMLQVASEGIDYHDDWPYAIHLLGYFYVDDCDSARF 60

Query: 61  LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTP 120
           LWK+IP+ IK+ + EVVAAWKIGQ LWT DYAGVY AIRG+DWSQEA+ +VAAFS   T 
Sbjct: 61  LWKTIPTAIKERKPEVVAAWKIGQKLWTHDYAGVYGAIRGYDWSQEAKDMVAAFSDLYTK 120

Query: 121 R 121
           R
Sbjct: 121 R 121

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236410|ref|NP_193147.1| COP9 signalosome complex subunit 8 [Arabidopsis thaliana] gi|1169013|sp|P43255.1|CSN8_ARATH RecName: Full=COP9 signalosome complex subunit 8; Short=CSN complex subunit 8; AltName: Full=Constitutive photomorphogenesis protein 9; AltName: Full=Protein FUSCA 7 gi|18056673|gb|AAL58110.1|AF395067_1 CSN complex subunit 8 [Arabidopsis thaliana] gi|530870|gb|AAA32773.1| CSN8 [Arabidopsis thaliana] gi|2244767|emb|CAB10190.1| COP9 protein [Arabidopsis thaliana] gi|7268116|emb|CAB78453.1| COP9 protein [Arabidopsis thaliana] gi|332657976|gb|AEE83376.1| COP9 signalosome complex subunit 8 [Arabidopsis thaliana]

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 102/121 (84%)

Query: 1   MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
           MD SP+ +ALA+KS++KIADICD LML+VA+EGI + D+WPY IHLLGY+YV+D +SARF
Sbjct: 1   MDLSPVKEALAAKSFDKIADICDTLMLQVASEGIEYHDDWPYAIHLLGYFYVDDCDSARF 60

Query: 61  LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTP 120
           LWK IP+ IK+ + EVVAAW IGQ LWT DYAGVY+AIRG+DWSQEA+ +VAAFS   T 
Sbjct: 61  LWKRIPTAIKERKPEVVAAWGIGQKLWTHDYAGVYEAIRGYDWSQEAKDMVAAFSDLYTK 120

Query: 121 R 121
           R
Sbjct: 121 R 121

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:2129435	197	COP9 "AT4G14110" [Arabidopsis	0.909	0.614	0.685	2.2e-43
UNIPROTKB|A4FV74	209	COPS8 "COPS8 protein" [Bos tau	0.842	0.535	0.372	4.7e-16
UNIPROTKB|B8ZZP3	206	COPS8 "COP9 signalosome comple	0.804	0.519	0.362	1.6e-15
UNIPROTKB|E9PGT6	173	COPS8 "COP9 signalosome comple	0.744	0.572	0.375	1.6e-15
UNIPROTKB|Q99627	209	COPS8 "COP9 signalosome comple	0.804	0.511	0.362	1.6e-15
UNIPROTKB|F1SM07	209	COPS8 "Uncharacterized protein	0.804	0.511	0.362	2e-15
MGI|MGI:1915363	209	Cops8 "COP9 (constitutive phot	0.812	0.516	0.348	2e-15
RGD|1311404	209	Cops8 "COP9 signalosome subuni	0.812	0.516	0.348	2e-15
UNIPROTKB|E1C444	209	COPS8 "Uncharacterized protein	0.781	0.497	0.375	8.8e-15
ZFIN|ZDB-GENE-040426-982	191	cops8 "COP9 constitutive photo	0.586	0.408	0.405	1e-13

TAIR|locus:2129435 COP9 "AT4G14110" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 83/121 (68%), Positives = 102/121 (84%)

Query:     1 MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
             MD SP+ +ALA+KS++KIADICD LML+VA+EGI + D+WPY IHLLGY+YV+D +SARF
Sbjct:     1 MDLSPVKEALAAKSFDKIADICDTLMLQVASEGIEYHDDWPYAIHLLGYFYVDDCDSARF 60

Query:    61 LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTP 120
             LWK IP+ IK+ + EVVAAW IGQ LWT DYAGVY+AIRG+DWSQEA+ +VAAFS   T 
Sbjct:    61 LWKRIPTAIKERKPEVVAAWGIGQKLWTHDYAGVYEAIRGYDWSQEAKDMVAAFSDLYTK 120

Query:   121 R 121
             R
Sbjct:   121 R 121

GO:0005515 "protein binding" evidence=IPI

GO:0008180 "signalosome" evidence=TAS;IPI

GO:0009640 "photomorphogenesis" evidence=RCA;TAS

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0000338 "protein deneddylation" evidence=TAS

GO:0004222 "metalloendopeptidase activity" evidence=TAS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010387 "signalosome assembly" evidence=IMP

GO:0010388 "cullin deneddylation" evidence=RCA;IMP

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|A4FV74 COPS8 "COPS8 protein" [Bos taurus (taxid:9913)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 44/118 (37%), Positives = 67/118 (56%)

Query:     9 ALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPS 67
             A +S S++K+ D C++  L+ A  GI      P    LL  Y + ND+N+AR+LWK IP 
Sbjct:     7 AESSFSFKKLLDQCENQELE-APGGIATP---PVYGQLLALYLLHNDMNNARYLWKRIPP 62

Query:    68 TIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFS 125
              IK + +E+   W +GQ +W RD+ GVY  I    WS+  Q ++ A   ++T R  F+
Sbjct:    63 AIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSEAVQPIMEALR-DATRRRAFA 119

GO:0010388 "cullin deneddylation" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|B8ZZP3 COPS8 "COP9 signalosome complex subunit 8" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 41/113 (36%), Positives = 64/113 (56%)

Query:    14 SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
             S++K+ D C++  L+ A  GI      P    LL  Y + ND+N+AR+LWK IP  IK +
Sbjct:    12 SFKKLLDQCENQELE-APGGIATP---PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSA 67

Query:    73 RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFS 125
              +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A   ++T R  F+
Sbjct:    68 NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALR-DATRRRAFA 119

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E9PGT6 COPS8 "COP9 signalosome complex subunit 8" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 39/104 (37%), Positives = 59/104 (56%)

Query:    14 SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
             S++K+ D C++  L+ A  GI      P    LL  Y + ND+N+AR+LWK IP  IK +
Sbjct:    12 SFKKLLDQCENQELE-APGGIATP---PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSA 67

Query:    73 RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSG 116
              +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A  G
Sbjct:    68 NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRG 111

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q99627 COPS8 "COP9 signalosome complex subunit 8" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 41/113 (36%), Positives = 64/113 (56%)

Query:    14 SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
             S++K+ D C++  L+ A  GI      P    LL  Y + ND+N+AR+LWK IP  IK +
Sbjct:    12 SFKKLLDQCENQELE-APGGIATP---PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSA 67

Query:    73 RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFS 125
              +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A   ++T R  F+
Sbjct:    68 NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALR-DATRRRAFA 119

GO:0008180 "signalosome" evidence=IDA

GO:0010388 "cullin deneddylation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1SM07 COPS8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 41/113 (36%), Positives = 64/113 (56%)

Query:    14 SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
             +++K+ D C++  L+ A  GI      P    LL  Y + ND+N+AR+LWK IP  IK +
Sbjct:    12 NFKKLLDQCENQELE-APGGIATP---PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSA 67

Query:    73 RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFS 125
              +E+   W +GQ +W RD+ GVY  I    WS+  Q ++ A   ++T R  F+
Sbjct:    68 NSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEALR-DATRRRAFA 119

GO:0010388 "cullin deneddylation" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1915363 Cops8 "COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)" [Mus musculus (taxid:10090)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 39/112 (34%), Positives = 63/112 (56%)

Query:    14 SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSR 73
             S+ K+ D C++  L+ A  GI     +  ++ L  Y   ND+N+AR+LWK IP  IK + 
Sbjct:    12 SFRKLLDQCENQELE-APGGIATPPVYGQLLAL--YLLQNDMNNARYLWKRIPPAIKSAN 68

Query:    74 AEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFS 125
             +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A   ++T R  F+
Sbjct:    69 SELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALR-DATRRRAFA 119

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008180 "signalosome" evidence=ISO;IDA

GO:0010388 "cullin deneddylation" evidence=ISO

RGD|1311404 Cops8 "COP9 signalosome subunit 8" [Rattus norvegicus (taxid:10116)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 39/112 (34%), Positives = 63/112 (56%)

Query:    14 SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSR 73
             S+ K+ D C++  L+ A  GI     +  ++ L  Y   ND+N+AR+LWK IP  IK + 
Sbjct:    12 SFRKLLDQCENQELE-APGGIATPPVYGQLLAL--YLLQNDMNNARYLWKRIPPAIKSAN 68

Query:    74 AEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFS 125
             +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A   ++T R  F+
Sbjct:    69 SELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALR-DATRRRAFA 119

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008180 "signalosome" evidence=IEA;ISO

GO:0010388 "cullin deneddylation" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E1C444 COPS8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 42/112 (37%), Positives = 62/112 (55%)

Query:    15 YEKIADICDDLMLKVAAEGIVFQDEWPYVI-HLLGYYYV-NDINSARFLWKSIPSTIKDS 72
             + K+ + C+   L+ A  GI      P V   LL  Y + ND+N+AR+LWK IP  IK +
Sbjct:    13 FRKLLEQCETQELE-APGGIAT----PLVYGQLLALYLLHNDMNNARYLWKRIPPAIKSA 67

Query:    73 RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCF 124
              AE+ A W +GQ +W RD+ G+Y  I    WS+  Q ++ A   ++T R  F
Sbjct:    68 NAELGAVWSVGQRIWQRDFPGIYTTISAHQWSETVQPIMEALR-DATRRRAF 118

GO:0005737 "cytoplasm" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0010388 "cullin deneddylation" evidence=IEA

ZFIN|ZDB-GENE-040426-982 cops8 "COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)" [Danio rerio (taxid:7955)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/79 (40%), Positives = 47/79 (59%)

Query:    46 LLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQ 105
             L+ Y   ND+N+AR+LWK IP  IK +  E+ A W +GQ +W RD+ G+Y AI  + WS+
Sbjct:    39 LVLYLLHNDMNNARYLWKRIPQAIKTANPEMAAIWAVGQRIWQRDFPGIYSAIAAYQWSE 98

Query:   106 EAQALVAAFSGNSTPRGCF 124
                 ++ A    ST R  +
Sbjct:    99 SILPVMEALR-ESTRRRAY 116

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008180 "signalosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P43255	CSN8_ARATH	No assigned EC number	0.6859	0.9097	0.6142	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_I0004	hypothetical protein (199 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0012044601	SubName- Full=Putative uncharacterized protein; (398 aa)				•	•		•		0.641
	estExt_fgenesh4_pg.C_LG_XIV0200	hypothetical protein (436 aa)					•		•		0.405
	estExt_Genewise1_v1.C_LG_II1288	hypothetical protein (436 aa)					•		•		0.403

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	133
pfam10075	144	pfam10075, PCI_Csn8, COP9 signalosome, subunit CSN	3e-24

>gnl|CDD|220553 pfam10075, PCI_Csn8, COP9 signalosome, subunit CSN8

 Score = 90.4 bits (225), Expect = 3e-24
 Identities = 27/79 (34%), Positives = 36/79 (45%)

Query: 36  FQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVY 95
                 Y + LL     NDI   R L K IP  IK+S  E+     +GQ LW  DYA  +
Sbjct: 1   ELKTELYGLILLKLLTQNDIADFRLLLKRIPQAIKESNPEIQQLLTLGQLLWENDYAKFW 60

Query: 96  DAIRGFDWSQEAQALVAAF 114
             +R  DWS++    +A  
Sbjct: 61  QTLRSNDWSEDYTPFIAGL 79

This PCI_Csn8 domain is conserved from plants to humans. It is a signature protein motif found in components of CSN (COP9 signalosome). It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development. Length = 144

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
KOG4414	197	consensus COP9 signalosome, subunit CSN8 [Posttran	100.0
PF10075	143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	99.88
PF03399	204	SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I	96.88
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	92.17
KOG3151	260	consensus 26S proteasome regulatory complex, subun	87.49
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	80.95

>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-49  Score=300.85  Aligned_cols=127  Identities=50%  Similarity=0.993  Sum_probs=124.9

Q ss_pred             CCchhHHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhcchhHHHHHhhCChhhhhccHHHHHHH
Q 032786            1 MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAW   80 (133)
Q Consensus         1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~~~~G~a~~~~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~~~el~~iw   80 (133)
                      ||.+.+.+++++++|+|++++||++||++++.|++++++|||++||++|+|.||.+||||||||||..||+.+||+.++|
T Consensus         1 M~la~m~EalaA~SFdKi~D~Cdn~~Lea~~eGIa~~~dw~Ya~~L~~Yf~~dD~dnARfLWKRIP~AIKe~k~El~aaW   80 (197)
T KOG4414|consen    1 MDLAPMAEALAAFSFDKIADICDNLELEAAGEGIATHDDWPYAIHLAGYFLHDDCDNARFLWKRIPPAIKEAKPELGAAW   80 (197)
T ss_pred             CCchHHHHHHHhhhHHHHHHHhhhhhhcccCCCccCCCcchHHHHHHHHHHhccchhHHHHHHhCCHHHhhcCchhhhhh
Confidence            99999999999999999999999999998767999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccChHHHHHHhhCCCCCHHHHHHHHHHHhchhhhhhhhhc
Q 032786           81 KIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSCF  127 (133)
Q Consensus        81 ~l~~alW~rdy~~vy~al~~~~Ws~~~~~lv~~l~~~~r~rt~~L~~  127 (133)
                      .|||.+|||||+|||++|++++||+.++++|++|++.+|+|.|.||.
T Consensus        81 giGQkiWq~Df~GiYeaI~~~dWSeeak~imaAf~D~~~kR~FaLl~  127 (197)
T KOG4414|consen   81 GIGQKIWQHDFAGIYEAINAHDWSEEAKDIMAAFRDATRKRAFALLL  127 (197)
T ss_pred             hhhHHHHhcccchHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999985

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8

Probab=99.88  E-value=4.1e-23  Score=153.12  Aligned_cols=88  Identities=34%  Similarity=0.651  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHHhhcchhHHHHHhhCChhhhhccHHHHHHHHHHHHHHccChHHHHHHhhCCCCCHHHHHHHHHHHhchh
Q 032786           40 WPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNST  119 (133)
Q Consensus        40 ~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~~~el~~iw~l~~alW~rdy~~vy~al~~~~Ws~~~~~lv~~l~~~~r  119 (133)
                      .+|+.+|+.||++||+++||++|+|||+++++.||+++++|.|++++|+++|++||.++++.+|++.++++|..|.+.+|
T Consensus         5 ~~~~~~Ll~~L~~~~~~df~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iR   84 (143)
T PF10075_consen    5 EIYALILLKYLMQNDLSDFRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFWQALRSNPWSPDYKPFVPGFEDTIR   84 (143)
T ss_dssp             HHHHHHHHHHHHTTTSTHHHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHHHHS-TT----HHHHTSTTHHHHHH
T ss_pred             hHHHHHHHHHHHcCCchHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhc
Q 032786          120 PRGCFSCF  127 (133)
Q Consensus       120 ~rt~~L~~  127 (133)
                      ++++.++-
T Consensus        85 ~~i~~~i~   92 (143)
T PF10075_consen   85 ERIAHLIS   92 (143)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999874

In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.

>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]

Probab=96.88  E-value=0.0053  Score=46.84  Aligned_cols=86  Identities=19%  Similarity=0.109  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHhhcchhHHHHHhhCChhhhhccHHHHHHHHHHHHHHccChHHHHHHhhCCCCCHHHHHHHHHHHhchh
Q 032786           40 WPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNST  119 (133)
Q Consensus        40 ~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~~~el~~iw~l~~alW~rdy~~vy~al~~~~Ws~~~~~lv~~l~~~~r  119 (133)
                      -+.+-+|+.+|.+|+..+.-.....+|++++ .+|.++-+-.|.+++.+.||..+++.+++.+=+...+.++..+.+..|
T Consensus       100 ef~~y~lL~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~al~l~~a~~~gny~~ff~l~~~~~~~~l~~~l~~~~~~~iR  178 (204)
T PF03399_consen  100 EFIAYYLLYLLCQNNIPDFHMELELLPSEIL-SSPYIQFALELCRALMEGNYVRFFRLYRSKSAPYLFACLMERFFNRIR  178 (204)
T ss_dssp             HHHHHHHHHTT-T---THHHHHHTTS-HHHH-TSHHHHHHHHHHHHH--TTHHHHHHHHT-TTS-HHHHHHHGGGHHHHH
T ss_pred             HHHHHHHHHHHHcccchHHHHHHHHCchhhh-cCHHHHHHHHHHHHHHcCCHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence            4566666666668877777778888999988 479999999999999999999999999666788889999999999999


Q ss_pred             hhhhhhh
Q 032786          120 PRGCFSC  126 (133)
Q Consensus       120 ~rt~~L~  126 (133)
                      .+++.-+
T Consensus       179 ~~al~~i  185 (204)
T PF03399_consen  179 LRALQSI  185 (204)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988754

The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=92.17  E-value=0.97  Score=27.91  Aligned_cols=66  Identities=11%  Similarity=0.148  Sum_probs=49.2

Q ss_pred             HHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhcchhHHHHHhhCChhhhhccHHHHHHHH
Q 032786            9 ALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWK   81 (133)
Q Consensus         9 ~~a~~~~~~l~~~cE~~EL~~~~~G~a~~~~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~~~el~~iw~   81 (133)
                      +++.|+|++-+..+++.--. .|+     +.-.+..+--+|+-.++...|+-++++++..-.. +|++..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~-~p~-----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~~l~a   66 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQR-NPD-----NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD-NPEYQQLLA   66 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHH-TTT-----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT-HHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHH-CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-HHHHHHHHh
Confidence            57899999999999887433 222     1124566777889999999999999999999885 577776654

...

>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]

Probab=87.49  E-value=3.5  Score=34.29  Aligned_cols=81  Identities=16%  Similarity=0.115  Sum_probs=71.5

Q ss_pred             hhHHHHHHHHHHhhcchhHHHHHhhCChhhhhccHHHHHHHHHHHHHHccChHHHHHHhhCCCCCHHHHHHHHHHHhchh
Q 032786           40 WPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNST  119 (133)
Q Consensus        40 ~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~~~el~~iw~l~~alW~rdy~~vy~al~~~~Ws~~~~~lv~~l~~~~r  119 (133)
                      ..-+.+|+-.|-+|.+.+=+....++|..+++.+|-+.-.-++-|.+=...|..|+.+.++.+ ++...-+|.-+.+-.|
T Consensus       101 ~l~GLnLL~LLsqNRiaeFHteLe~lp~~~l~~~~~I~~~v~LEq~~MEGaYnKv~~a~~s~p-~~~y~~FmdIl~~tiR  179 (260)
T KOG3151|consen  101 KLLGLNLLYLLSQNRIAEFHTELELLPKKILQHNPYISHPVSLEQSLMEGAYNKVLSAKQSIP-SEEYTYFMDILLDTIR  179 (260)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHhccHHHhhccchhhhHHHHHHHHHhhHHHHHHHHHhcCC-cHHHHHHHHHHHHHHH
Confidence            456778888888999999999999999999999999999999999999999999999999888 7777777777777666


Q ss_pred             hh
Q 032786          120 PR  121 (133)
Q Consensus       120 ~r  121 (133)
                      +.
T Consensus       180 dE  181 (260)
T KOG3151|consen  180 DE  181 (260)
T ss_pred             HH
Confidence            53

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=80.95  E-value=20  Score=31.69  Aligned_cols=103  Identities=17%  Similarity=0.258  Sum_probs=64.7

Q ss_pred             HHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCc------hhHHHHHHHHHHhhcchhHHHHHhhCChhhhhccHHHHHH
Q 032786            6 LTDALASKSYEKIADICDDLMLKVAAEGIVFQDE------WPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAA   79 (133)
Q Consensus         6 i~~~~a~~~~~~l~~~cE~~EL~~~~~G~a~~~~------~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~~~el~~i   79 (133)
                      .+.++..|++..+....++++=.    |.-+.+.      +-|--.|==--=.+|..+=+--||++|.++| ++|+++..
T Consensus       194 ~r~y~~~g~~~~ll~~l~~L~ka----~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr-~~p~l~~~  268 (400)
T COG3071         194 LRAYIRLGAWQALLAILPKLRKA----GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLR-NDPELVVA  268 (400)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHc----cCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhh-cChhHHHH
Confidence            56789999999999999887732    3222222      1111111000112344455678999999999 57999887


Q ss_pred             HHHHHHHHccChHHHHHHhhC---CCCCHHHHHHHHHH
Q 032786           80 WKIGQHLWTRDYAGVYDAIRG---FDWSQEAQALVAAF  114 (133)
Q Consensus        80 w~l~~alW~rdy~~vy~al~~---~~Ws~~~~~lv~~l  114 (133)
                      .. -+.+--+++...++.+..   ..|.+.+--++..+
T Consensus       269 ~a-~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l  305 (400)
T COG3071         269 YA-ERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRL  305 (400)
T ss_pred             HH-HHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhc
Confidence            76 566677788876665543   46777765555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
1rz4_A	226	Eukaryotic translation initiation factor 3 subuni;	98.28
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	98.18
4b4t_T	274	26S proteasome regulatory subunit RPN12; hydrolase	96.22
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	92.4

>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18

Probab=98.28  E-value=3.8e-07  Score=72.15  Aligned_cols=70  Identities=11%  Similarity=0.178  Sum_probs=62.7

Q ss_pred             HHhhcchhHHHHHhhCChhhhhccHHHHHHHHHHHHHHccChHHHHHHhhCCCCCHHHHHHHHHHHhchhhhhhhhh
Q 032786           50 YYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSC  126 (133)
Q Consensus        50 Ll~nDL~~AR~LwKRIP~~lk~~~~el~~iw~l~~alW~rdy~~vy~al~~~~Ws~~~~~lv~~l~~~~r~rt~~L~  126 (133)
                      +...|.+.+++|   ||++++ .+++++.+|.|++.||+++|+++|+++++   +..+.+.|..|.+.+|++.+.++
T Consensus        77 ~p~~DF~~~l~L---Ip~~~~-~~~~I~~i~~L~~~L~~~~y~~fW~~l~~---~~~l~~~i~gf~dsIR~~I~~~i  146 (226)
T 1rz4_A           77 LPHTDFTLCKCM---IDQAHQ-EERPIRQILYLGDLLETCHFQAFWQALDE---NMDLLEGITGFEDSVRKFICHVV  146 (226)
T ss_dssp             TTSTHHHHHHHT---SCHHHH-TSTTHHHHHHHHHHHHTTCHHHHHHHSCT---TCHHHHTSTTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHh---CChhhh-cCHHHHHHHHHHHHHHcCCHHHHHHHHhc---ChhHHHHHhHHHHHHHHHHHHHH
Confidence            447899999999   899997 68999999999999999999999999986   36788999999999999988765

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=98.18  E-value=5.4e-05  Score=59.26  Aligned_cols=125  Identities=14%  Similarity=0.121  Sum_probs=96.1

Q ss_pred             CCchhHHHHHhccCHHHHHHHHHHHh--hhhh----------------------------------------------hc
Q 032786            1 MDFSPLTDALASKSYEKIADICDDLM--LKVA----------------------------------------------AE   32 (133)
Q Consensus         1 m~~~~i~~~~a~~~~~~l~~~cE~~E--L~~~----------------------------------------------~~   32 (133)
                      ||...+.++.+++||++....+..+-  |..-                                              .+
T Consensus         9 ~~l~~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~   88 (229)
T 4b0z_A            9 LDLNHLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHD   88 (229)
T ss_dssp             CCSHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence            67888999999999998777776541  1100                                              01


Q ss_pred             CC-cCCC-chhHHHHHHHHHHhhcchhHHHHHhhCChh-hhhccHHHHHHHHHHHHHHccChHHHHHHhhCCCCCHHHHH
Q 032786           33 GI-VFQD-EWPYVIHLLGYYYVNDINSARFLWKSIPST-IKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQA  109 (133)
Q Consensus        33 G~-a~~~-~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~-lk~~~~el~~iw~l~~alW~rdy~~vy~al~~~~Ws~~~~~  109 (133)
                      |. .++. .-+.+-+|+.+|.+|++.+-.-...++|.+ +.+.||-++-..+|-+++++.||..+++..++.++. ....
T Consensus        89 ~~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~-~~~~  167 (229)
T 4b0z_A           89 SLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFP-EFSY  167 (229)
T ss_dssp             CCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCG-GGHH
T ss_pred             cCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccc-hHHH
Confidence            11 1111 145677788889999999999899999864 444689999999999999999999999999987664 4678


Q ss_pred             HHHHHHhchhhhhhhhh
Q 032786          110 LVAAFSGNSTPRGCFSC  126 (133)
Q Consensus       110 lv~~l~~~~r~rt~~L~  126 (133)
                      +|..|.+.+|.+++.-+
T Consensus       168 ~~~~l~~~vR~~~l~~i  184 (229)
T 4b0z_A          168 FMKIVMSMVRNEIATCA  184 (229)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999887643

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.026  Score=45.25  Aligned_cols=85  Identities=12%  Similarity=0.085  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHHHhhcchhHHHHHhhCChhhhh--ccHHHHHHHHHHHHHHccChHHHHHHhhCCCCC-HHHHHHHHHHHh
Q 032786           40 WPYVIHLLGYYYVNDINSARFLWKSIPSTIKD--SRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWS-QEAQALVAAFSG  116 (133)
Q Consensus        40 ~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~--~~~el~~iw~l~~alW~rdy~~vy~al~~~~Ws-~~~~~lv~~l~~  116 (133)
                      -+.+-+|+-+|.+|++.+=.-...++|...++  .||-++-...|-+++.+.+|..+|+..+..+.+ +....+|..|.+
T Consensus       104 e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~  183 (274)
T 4b4t_T          104 KLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKS  183 (274)
T ss_dssp             HHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            45666777777899999999899999975432  589999999999999999999999999988875 566899999999


Q ss_pred             chhhhhhh
Q 032786          117 NSTPRGCF  124 (133)
Q Consensus       117 ~~r~rt~~  124 (133)
                      .+|.+.+.
T Consensus       184 ~iR~~a~~  191 (274)
T 4b4t_T          184 AIRDEIAK  191 (274)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988765

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=92.40  E-value=0.64  Score=38.00  Aligned_cols=90  Identities=11%  Similarity=-0.040  Sum_probs=64.2

Q ss_pred             CCcCCCc-hhHHHHHHHHHHhhcchhHHHHHhhCChhhhhccHHHHHHHHHHHHHH---------------ccChHHHHH
Q 032786           33 GIVFQDE-WPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLW---------------TRDYAGVYD   96 (133)
Q Consensus        33 G~a~~~~-~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~~~el~~iw~l~~alW---------------~rdy~~vy~   96 (133)
                      |...|.. -+.+-+++.+|...|+.   -.-.++|.++++ +|.++-...+-+++.               .++|..+|+
T Consensus       109 ~~~~~ne~EF~aY~lL~~l~~~~~~---~~l~~Lp~~i~~-~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFr  184 (316)
T 3t5v_A          109 GGTCPNEAEFRAYALLSKIRDPQYD---ENIQRLPKHIFQ-DKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQ  184 (316)
T ss_dssp             TCCCTTHHHHHHHHHHHSTTCTHHH---HHHTTSCHHHHT-SHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhccchHH---HHHHhCCHHHhc-CHHHHHHHHHHHHHHhcccccccccccccccchHHHHHH
Confidence            4434432 46666666666544432   345789999995 799999999888764               268999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHhchhhhhhhhh
Q 032786           97 AIRGFDWSQEAQALVAAFSGNSTPRGCFSC  126 (133)
Q Consensus        97 al~~~~Ws~~~~~lv~~l~~~~r~rt~~L~  126 (133)
                      .+++..=|-....+|..+....|.+++.-+
T Consensus       185 L~~~~~~pyL~aclle~~~~~vR~~AL~~i  214 (316)
T 3t5v_A          185 LMQSPSLPLLMGFFLQMHLTDIRFYALRAL  214 (316)
T ss_dssp             HHTCTTSCHHHHHHHGGGHHHHHHHHHHHH
T ss_pred             HHhccCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            998633556667888888888888887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00