Citrus Sinensis ID: 032819

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MAAASGSKVGPAIRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSAEAAKRGRS
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEccccccccccccEEccccccccEEEEEccEEEEEccccccEEccEEEEEEEcccccccEEccccccccccccccEEccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEccHHHHHHHHHHHHHcccccEEEEEEcccccccEEEEEEEcccccccEEEEcccEEEEEcccHHHEEccEEEEEEEcccccEEEEEcccccccccccccEEEcccccHHHcccc
Coil and Loop (DISEMBL)
maaasgskvgpaIRRQALTLTESAAERLRQLLEQRQRPFlrlgvkargcnglsytlnyadekskfdeVVEDkgvkilidpkALMHVIGTKMDFVDDKLRSEFvfinpnskgqcgcgesfmttSSAEAAKRGRS
Flexible Loop (DISEMBL)
maaasgskvgpairrqALTLTESAAERLRQLLEqrqrpflrlgvkargcnGLSYtlnyadekskfDEVVEDKGVKilidpkalmHVIGTKMDFVDDKLRSEFVFINpnskgqcgcgesfmttssaeaakrgrs
Low Complexity Region (SEG)
MAAASGSKVGPAIRRQALTLTESAAErlrqlleqrqrpflrlGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSAEAAKRGRS
Disordered region (IsUnstruct)
**********************************RQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGC******************
Disordered Region (DISOPRED)
*****************LTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM*************
Disordered Region (DISEMBL)
**********PAIRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM*************
Disordered Region (DISPRO)
************IRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT*S*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAASGSKVGPAIRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSAEAAKRGRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q8LBM4	137	Iron-sulfur assembly prot	yes	no	0.902	0.875	0.816	2e-57
Q8L8C0	109	Iron-sulfur assembly prot	no	no	0.819	1.0	0.736	8e-46
Q07821	250	Iron-sulfur assembly prot	yes	no	0.781	0.416	0.576	5e-31
Q9ZD62	110	Uncharacterized protein R	yes	no	0.789	0.954	0.495	3e-30
Q54VS1	139	Iron-sulfur cluster assem	yes	no	0.909	0.870	0.448	3e-29
Q5ZJ74	129	Iron-sulfur cluster assem	yes	no	0.789	0.813	0.556	1e-28
Q4R5F0	129	Iron-sulfur cluster assem	N/A	no	0.864	0.891	0.525	3e-28
Q9BUE6	129	Iron-sulfur cluster assem	yes	no	0.864	0.891	0.525	3e-28
Q3SZG8	129	Iron-sulfur cluster assem	yes	no	0.864	0.891	0.525	3e-28
Q80W96	129	Iron-sulfur cluster assem	yes	no	0.864	0.891	0.525	4e-28

>sp|Q8LBM4|ISAM1_ARATH Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2

 Score =  220 bits (561), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 98/120 (81%), Positives = 113/120 (94%)

Query: 8   KVGPAIRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDE 67
           +VGPA+R+Q LTLT+ AA R+  LL+QRQ+PFLRLGVKARGCNGLSYTLNYADEK KFDE
Sbjct: 13  RVGPALRKQVLTLTDEAASRVHHLLQQRQKPFLRLGVKARGCNGLSYTLNYADEKGKFDE 72

Query: 68  VVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSAEA 127
           +VE+KGV+IL++PKALMHVIGTKMDFVDDKLRSEFVFINPNS+GQCGCGESFMTTS++ A
Sbjct: 73  LVEEKGVRILVEPKALMHVIGTKMDFVDDKLRSEFVFINPNSQGQCGCGESFMTTSTSSA 132

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8C0|ISAM3_ARATH Iron-sulfur assembly protein IscA-like 3, mitochondrial OS=Arabidopsis thaliana GN=At2g36260 PE=3 SV=2

 Score =  182 bits (461), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 81/110 (73%), Positives = 99/110 (90%), Gaps = 1/110 (0%)

Query: 13  IRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDK 72
           +R+Q L L+++AA R+RQLL+ +Q+PFLRL V+A+GCNGLSY LNYA EK KFDEVVE+K
Sbjct: 1   MRKQVLALSDTAAARIRQLLQHQQKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEK 60

Query: 73  GVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT 122
           GVKIL+DPKA+MHVIGT+MDFVDDKLRSEFVF+NPN+  +CGCGESF TT
Sbjct: 61  GVKILVDPKAVMHVIGTEMDFVDDKLRSEFVFVNPNAT-KCGCGESFTTT 109

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Arabidopsis thaliana (taxid: 3702)

>sp|Q07821|ISA1_YEAST Iron-sulfur assembly protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISA1 PE=1 SV=1

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 76/104 (73%)

Query: 18  LTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKIL 77
           +TL+  A + LR LL Q +   +R+  + RGC+GL+Y L Y  E  KFDEVVE  GVKI+
Sbjct: 147 ITLSPKAIKHLRALLAQPEPKLIRVSARNRGCSGLTYDLQYITEPGKFDEVVEQDGVKIV 206

Query: 78  IDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 121
           ID KAL  +IG++MD++DDKL S+FVF NPNSKG CGCGESFM 
Sbjct: 207 IDSKALFSIIGSEMDWIDDKLASKFVFKNPNSKGTCGCGESFMV 250

Involved in the assembly of mitochondrial and cytoplasmic iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9ZD62|Y484_RICPR Uncharacterized protein RP484 OS=Rickettsia prowazekii (strain Madrid E) GN=RP484 PE=3 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 85/107 (79%), Gaps = 2/107 (1%)

Query: 15  RQALTLTESAAERLRQLLEQRQRPF--LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDK 72
           +  ++LT++AA++++ L+E+R +P   +R+G+K+ GC G +Y + YAD K++FDEVVE+K
Sbjct: 2   KNVISLTDAAAKQVKLLIEKRAKPTFGIRVGIKSGGCAGQTYYVEYADNKNQFDEVVEEK 61

Query: 73  GVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
           GV+ILIDPK LM+++G++MD+V+   +S+F F NPN K  CGCG+SF
Sbjct: 62  GVRILIDPKTLMYILGSEMDYVETNFKSQFTFTNPNEKANCGCGKSF 108

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

>sp|Q54VS1|ISCA1_DICDI Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=isca1 PE=3 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 92/125 (73%), Gaps = 4/125 (3%)

Query: 1   MAAASGSKVGPAIRRQALTLTESAAERLRQLLEQRQRPF---LRLGVKARGCNGLSYTLN 57
           M+ +   K+G   ++   ++T+SA +R+++++  ++      LRLG+K RGC+G+SYTL+
Sbjct: 1   MSISGVVKLGKPSKKAIFSMTDSALKRVKEIMNDKKIDNCIGLRLGIKERGCSGMSYTLD 60

Query: 58  YADEKSKFDE-VVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCG 116
           +A +K+KFDE VV DK + I++D KAL+ VIGT+MD++++ ++ EF+FINPN+   CGCG
Sbjct: 61  FATQKNKFDETVVADKDINIIVDSKALLSVIGTEMDYIEEPIKKEFIFINPNATNTCGCG 120

Query: 117 ESFMT 121
           ESF T
Sbjct: 121 ESFTT 125

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5ZJ74|ISCA1_CHICK Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Gallus gallus GN=ISCA1 PE=2 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 78/106 (73%), Gaps = 1/106 (0%)

Query: 15  RQALTLTESAAERLRQLL-EQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKG 73
           R ALTLT SA ++++QLL +Q +   +++GV+ RGCNGLSYTL Y   K   DE V   G
Sbjct: 22  RAALTLTPSAVQKIKQLLKDQPEHVGVKVGVRTRGCNGLSYTLEYTKSKGDSDEEVVQDG 81

Query: 74  VKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
           V++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct: 82  VRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Gallus gallus (taxid: 9031)

>sp|Q4R5F0|ISCA1_MACFA Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Macaca fascicularis GN=ISCA1 PE=2 SV=1

 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 82/118 (69%), Gaps = 3/118 (2%)

Query: 3   AASGSKVGPAIRRQALTLTESAAERLRQLLEQR-QRPFLRLGVKARGCNGLSYTLNYADE 61
           A S  K+ P   R ALTLT SA  +++QLL+ + +   +++GV+ RGCNGLSYTL Y   
Sbjct: 12  AVSKRKLQPT--RAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKT 69

Query: 62  KSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
           K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct: 70  KGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Macaca fascicularis (taxid: 9541)

>sp|Q9BUE6|ISCA1_HUMAN Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Homo sapiens GN=ISCA1 PE=2 SV=1

 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 82/118 (69%), Gaps = 3/118 (2%)

Query: 3   AASGSKVGPAIRRQALTLTESAAERLRQLLEQR-QRPFLRLGVKARGCNGLSYTLNYADE 61
           A S  K+ P   R ALTLT SA  +++QLL+ + +   +++GV+ RGCNGLSYTL Y   
Sbjct: 12  AVSKRKLQPT--RAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKT 69

Query: 62  KSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
           K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct: 70  KGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Homo sapiens (taxid: 9606)

>sp|Q3SZG8|ISCA1_BOVIN Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Bos taurus GN=ISCA1 PE=2 SV=1

 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 82/118 (69%), Gaps = 3/118 (2%)

Query: 3   AASGSKVGPAIRRQALTLTESAAERLRQLLEQR-QRPFLRLGVKARGCNGLSYTLNYADE 61
           A S  K+ P   R ALTLT SA  +++QLL+ + +   +++GV+ RGCNGLSYTL Y   
Sbjct: 12  AVSKRKLQPT--RAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKT 69

Query: 62  KSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
           K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct: 70  KGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Bos taurus (taxid: 9913)

>sp|Q80W96|ISCA1_RAT Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Rattus norvegicus GN=Isca1 PE=2 SV=1

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 82/118 (69%), Gaps = 3/118 (2%)

Query: 3   AASGSKVGPAIRRQALTLTESAAERLRQLLEQR-QRPFLRLGVKARGCNGLSYTLNYADE 61
           A S  K+ P   R ALTLT SA  +++QLL+ + +   L++GV+ RGCNGLSY+L Y   
Sbjct: 12  AVSKRKLQPT--RAALTLTPSAVNKIKQLLKDKPEHVGLKVGVRTRGCNGLSYSLEYTKT 69

Query: 62  KSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
           K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct: 70  KGDADEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
255575681	138	iron-sulfur cluster assembly protein, pu	0.939	0.905	0.864	5e-60
255560329	132	iron-sulfur cluster assembly protein, pu	0.977	0.984	0.846	4e-59
449512791	167	PREDICTED: iron-sulfur assembly protein	0.917	0.730	0.885	4e-59
449434502	137	PREDICTED: iron-sulfur assembly protein	0.924	0.897	0.878	4e-59
209484093	167	iron-sulfer cluster scaffold protein ISA	0.984	0.784	0.801	9e-59
224097616	141	predicted protein [Populus trichocarpa]	0.984	0.929	0.816	2e-58
224110166	141	predicted protein [Populus trichocarpa]	0.984	0.929	0.801	1e-56
225440900	133	PREDICTED: iron-sulfur assembly protein	0.902	0.902	0.858	2e-56
363808122	134	uncharacterized protein LOC100777750 [Gl	0.954	0.947	0.779	9e-56
297832260	137	hypothetical protein ARALYDRAFT_480553 [	0.902	0.875	0.816	1e-55

>gi|255575681|ref|XP_002528740.1| iron-sulfur cluster assembly protein, putative [Ricinus communis] gi|223531834|gb|EEF33652.1| iron-sulfur cluster assembly protein, putative [Ricinus communis]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 108/125 (86%), Positives = 119/125 (95%)

Query: 1   MAAASGSKVGPAIRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYAD 60
           + AA+  K+GPA RRQALTLT++AA R+R LL+QRQRPFL+LGVKARGCNGLSYTLNYAD
Sbjct: 5   LLAAAAEKIGPAARRQALTLTDAAASRIRHLLQQRQRPFLKLGVKARGCNGLSYTLNYAD 64

Query: 61  EKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 120
           EK+KFDE+VE+KGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM
Sbjct: 65  EKAKFDELVEEKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 124

Query: 121 TTSSA 125
           TTSSA
Sbjct: 125 TTSSA 129

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560329|ref|XP_002521181.1| iron-sulfur cluster assembly protein, putative [Ricinus communis] gi|223539628|gb|EEF41212.1| iron-sulfur cluster assembly protein, putative [Ricinus communis]

 Score =  232 bits (592), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 110/130 (84%), Positives = 120/130 (92%)

Query: 4   ASGSKVGPAIRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKS 63
           A+   +G A RR+AL+LT++AA R+R LL QRQRPFLRLGVKARGCNGLSYTLNYADEK 
Sbjct: 2   AASRVLGQAARREALSLTDAAAARIRHLLVQRQRPFLRLGVKARGCNGLSYTLNYADEKG 61

Query: 64  KFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTS 123
           KFDE+VEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEF+FINPNSKGQCGCGESFMTTS
Sbjct: 62  KFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTTS 121

Query: 124 SAEAAKRGRS 133
           S+EAAKRG S
Sbjct: 122 SSEAAKRGVS 131

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449512791|ref|XP_004164140.1| PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial-like [Cucumis sativus]

 Score =  232 bits (592), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/122 (88%), Positives = 115/122 (94%)

Query: 8   KVGPAIRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDE 67
           K GPA RRQ LTLTE+AA R+RQLL+QRQRPFLRLGVKARGCNGLSYTLNYADEK KFDE
Sbjct: 15  KAGPAARRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLSYTLNYADEKGKFDE 74

Query: 68  VVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSAEA 127
           +VED+ VKILI+PKALMHVIGTKMDFVDDKLRSEF+FINPNSKGQCGCGESFMTTSSAEA
Sbjct: 75  LVEDQNVKILIEPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTTSSAEA 134

Query: 128 AK 129
            K
Sbjct: 135 NK 136

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434502|ref|XP_004135035.1| PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial-like isoform 1 [Cucumis sativus]

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/123 (87%), Positives = 116/123 (94%)

Query: 8   KVGPAIRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDE 67
           K GPA RRQ LTLTE+AA R+RQLL+QRQRPFLRLGVKARGCNGLSYTLNYADEK KFDE
Sbjct: 15  KAGPAARRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLSYTLNYADEKGKFDE 74

Query: 68  VVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSAEA 127
           +VED+ VKILI+PKALMHVIGTKMDFVDDKLRSEF+FINPNSKGQCGCGESFMTTSSAEA
Sbjct: 75  LVEDQNVKILIEPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTTSSAEA 134

Query: 128 AKR 130
            K+
Sbjct: 135 NKK 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209484093|gb|ACI47521.1| iron-sulfer cluster scaffold protein ISA1, partial [Eucalyptus grandis]

 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 105/131 (80%), Positives = 120/131 (91%)

Query: 3   AASGSKVGPAIRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEK 62
           AA+  + G A RRQ LT+T++AA R+R LL+QRQRPFLRLGVKARGCNGLSYTLNYAD K
Sbjct: 37  AAAADRFGSAARRQVLTVTDAAASRIRHLLQQRQRPFLRLGVKARGCNGLSYTLNYADSK 96

Query: 63  SKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT 122
            KFDE+VEDKG+KIL++PKALMHVIGTKMDFVDDKLRSEF+FINPNSKGQCGCGESFMTT
Sbjct: 97  GKFDELVEDKGIKILVEPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTT 156

Query: 123 SSAEAAKRGRS 133
           S+++AAKRG S
Sbjct: 157 SNSDAAKRGGS 167

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097616|ref|XP_002311012.1| predicted protein [Populus trichocarpa] gi|222850832|gb|EEE88379.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/131 (81%), Positives = 118/131 (90%)

Query: 3   AASGSKVGPAIRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEK 62
           AA+   VG + R+Q L LT++AA R+R LL+QRQRPFLRLGVKARGCNGLSYTLNYADEK
Sbjct: 11  AAAAESVGSSARKQVLDLTDTAATRIRHLLQQRQRPFLRLGVKARGCNGLSYTLNYADEK 70

Query: 63  SKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT 122
            +FDE+V DKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNS+GQCGCGESFMTT
Sbjct: 71  GRFDELVADKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSQGQCGCGESFMTT 130

Query: 123 SSAEAAKRGRS 133
           SS+E AKRG S
Sbjct: 131 SSSETAKRGGS 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110166|ref|XP_002315435.1| predicted protein [Populus trichocarpa] gi|222864475|gb|EEF01606.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/131 (80%), Positives = 117/131 (89%)

Query: 3   AASGSKVGPAIRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEK 62
           AA+   VG + R+Q L+LT++AA R+R LL+QR+RPFLRLGVKARGCNGLSYTLNYADEK
Sbjct: 11  AAAAEAVGSSARKQVLSLTDAAATRIRDLLQQRKRPFLRLGVKARGCNGLSYTLNYADEK 70

Query: 63  SKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT 122
            KFDE+VEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEF+FINPNSKGQCGCGESFMT 
Sbjct: 71  GKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTR 130

Query: 123 SSAEAAKRGRS 133
           SS+  AK G S
Sbjct: 131 SSSTTAKGGGS 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440900|ref|XP_002282752.1| PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Vitis vinifera] gi|297740107|emb|CBI30289.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/120 (85%), Positives = 113/120 (94%)

Query: 10  GPAIRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVV 69
           GP++RRQALTLT++AA R+R LL+QRQR FLRLGVKARGCNGLSYTLNYAD+K KFDE+V
Sbjct: 14  GPSLRRQALTLTDAAASRIRHLLQQRQRTFLRLGVKARGCNGLSYTLNYADDKGKFDELV 73

Query: 70  EDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSAEAAK 129
           EDKGVKILIDPKALMHVIGTKMDFVDDKLRSEF+FINPNSKGQCGCGESFMTT +  AAK
Sbjct: 74  EDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTTGNPGAAK 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808122|ref|NP_001241965.1| uncharacterized protein LOC100777750 [Glycine max] gi|255640925|gb|ACU20744.1| unknown [Glycine max]

 Score =  221 bits (562), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 99/127 (77%), Positives = 117/127 (92%)

Query: 3   AASGSKVGPAIRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEK 62
           + +  K+  A RRQA++LT++AA R+RQLL+QRQRPFL+LGVKARGCNGLSYTLNYA+EK
Sbjct: 7   SVAAEKIATAARRQAVSLTDAAASRIRQLLQQRQRPFLKLGVKARGCNGLSYTLNYANEK 66

Query: 63  SKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT 122
            KFDE+VEDKGVKILIDPKALMHVIGTKMDFVDDKL+SEF+F+NPNSKGQCGCGESFMTT
Sbjct: 67  GKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLKSEFIFVNPNSKGQCGCGESFMTT 126

Query: 123 SSAEAAK 129
            S+ ++K
Sbjct: 127 GSSGSSK 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832260|ref|XP_002884012.1| hypothetical protein ARALYDRAFT_480553 [Arabidopsis lyrata subsp. lyrata] gi|21592728|gb|AAM64677.1| putative HesB-like protein [Arabidopsis thaliana] gi|297329852|gb|EFH60271.1| hypothetical protein ARALYDRAFT_480553 [Arabidopsis lyrata subsp. lyrata]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 98/120 (81%), Positives = 113/120 (94%)

Query: 8   KVGPAIRRQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDE 67
           +VGPA+R+Q LTLT+ AA R+  LL+QRQ+PFLRLGVKARGCNGLSYTLNYADEK KFDE
Sbjct: 13  RVGPALRKQVLTLTDEAASRVHHLLQQRQKPFLRLGVKARGCNGLSYTLNYADEKGKFDE 72

Query: 68  VVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSAEA 127
           +VE+KGV+IL++PKALMHVIGTKMDFVDDKLRSEFVFINPNS+GQCGCGESFMTTS++ A
Sbjct: 73  LVEEKGVRILVEPKALMHVIGTKMDFVDDKLRSEFVFINPNSQGQCGCGESFMTTSTSSA 132

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:2049440	109	AT2G36260 [Arabidopsis thalian	0.819	1.0	0.636	2.5e-33
CGD|CAL0006111	269	ISA1 [Candida albicans (taxid:	0.804	0.397	0.523	2.5e-28
WB|WBGene00012666	131	Y39B6A.3 [Caenorhabditis elega	0.842	0.854	0.513	1.4e-25
FB|FBgn0026666	130	l(1)G0136 "lethal (1) G0136" [	0.864	0.884	0.525	2.2e-25
SGD|S000003950	250	ISA1 "Protein required for mat	0.804	0.428	0.514	1.2e-24
ASPGD|ASPL0000043500	242	AN10237 [Emericella nidulans (	0.804	0.442	0.514	6.8e-24
DICTYBASE|DDB_G0280173	139	isca1 "iron-sulfur cluster ass	0.593	0.568	0.575	8.7e-24
UNIPROTKB|E2RM27	178	ISCA1 "Uncharacterized protein	0.864	0.646	0.5	2.9e-23
UNIPROTKB|F1S4I4	170	ISCA1 "Uncharacterized protein	0.864	0.676	0.5	2.9e-23
UNIPROTKB|Q3SZG8	129	ISCA1 "Iron-sulfur cluster ass	0.864	0.891	0.5	3.8e-23

TAIR|locus:2049440 AT2G36260 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 70/110 (63%), Positives = 84/110 (76%)

Query:    13 IRRQALTLTESAAEXXXXXXXXXXXXXXXXGVKARGCNGLSYTLNYADEKSKFDEVVEDK 72
             +R+Q L L+++AA                  V+A+GCNGLSY LNYA EK KFDEVVE+K
Sbjct:     1 MRKQVLALSDTAAARIRQLLQHQQKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEK 60

Query:    73 GVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT 122
             GVKIL+DPKA+MHVIGT+MDFVDDKLRSEFVF+NPN+  +CGCGESF TT
Sbjct:    61 GVKILVDPKAVMHVIGTEMDFVDDKLRSEFVFVNPNAT-KCGCGESFTTT 109

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

CGD|CAL0006111 ISA1 [Candida albicans (taxid:5476)]

 Score = 299 (110.3 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 56/107 (52%), Positives = 72/107 (67%)

Query:    14 RRQALTLTESAAEXXXXXXXXXXXXXXXXGVKARGCNGLSYTLNYADEKSKFDEVVEDKG 73
             R+  +TLT SA +                GV+ RGC+GL+Y L Y D+  KFDE+VE  G
Sbjct:   162 RKALITLTSSAVQHLQGLLDQPDPKLIRIGVRNRGCSGLTYNLEYVDKPGKFDELVEQDG 221

Query:    74 VKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 120
             VK+LID KAL  ++G++MD++DDKL S F+F NPNSKG CGCGESFM
Sbjct:   222 VKVLIDSKALFSIVGSEMDWLDDKLSSRFIFKNPNSKGTCGCGESFM 268

GO:0005506 "iron ion binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0009102 "biotin biosynthetic process" evidence=IEA

WB|WBGene00012666 Y39B6A.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 58/113 (51%), Positives = 73/113 (64%)

Query:     8 KVGPAIRRQALTLT-ESAAEXXXXXXXXXXXXXXXXGVKARGCNGLSYTLNYADEKSKFD 66
             KV     R ALTLT E+ +                 GV+ +GCNGL+YTL YA +K KFD
Sbjct:    17 KVRQTSFRAALTLTNEAVSRIRVLLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFD 76

Query:    67 EVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
             E VE  G+K+ I+PKA + ++G++MD+V DKL SEFVF NPN KG CGCGESF
Sbjct:    77 EEVEQDGIKVWIEPKAQLSLLGSEMDYVTDKLSSEFVFRNPNIKGTCGCGESF 129

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

FB|FBgn0026666 l(1)G0136 "lethal (1) G0136" [Drosophila melanogaster (taxid:7227)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 62/118 (52%), Positives = 73/118 (61%)

Query:     3 AASGSKVGPAIRRQALTLTESAA-EXXXXXXXXXXXXXXXXGVKARGCNGLSYTLNYADE 61
             A  G K+ P   R ALTLT +A                   GV+ RGCNGLSYTL+YA +
Sbjct:    13 AVKGRKLIPT--RAALTLTPAAVLRIKTLLQDKPDMVGLKVGVRQRGCNGLSYTLDYASQ 70

Query:    62 KSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
             K K DE V   GVK+ ID KA + ++GT+MDFV+ KL SEFVF NPN KG CGCGESF
Sbjct:    71 KDKLDEEVVQDGVKVFIDKKAQLSLLGTEMDFVESKLSSEFVFNNPNIKGTCGCGESF 128

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

SGD|S000003950 ISA1 "Protein required for maturation of mitochondrial [4Fe-4S] proteins" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 55/107 (51%), Positives = 69/107 (64%)

Query:    14 RRQALTLTESAAEXXXXXXXXXXXXXXXXGVKARGCNGLSYTLNYADEKSKFDEVVEDKG 73
             R+  +TL+  A +                  + RGC+GL+Y L Y  E  KFDEVVE  G
Sbjct:   143 RKALITLSPKAIKHLRALLAQPEPKLIRVSARNRGCSGLTYDLQYITEPGKFDEVVEQDG 202

Query:    74 VKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 120
             VKI+ID KAL  +IG++MD++DDKL S+FVF NPNSKG CGCGESFM
Sbjct:   203 VKIVIDSKALFSIIGSEMDWIDDKLASKFVFKNPNSKGTCGCGESFM 249

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;IMP

GO:0051536 "iron-sulfur cluster binding" evidence=IEA;ISA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005506 "iron ion binding" evidence=IDA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0009102 "biotin biosynthetic process" evidence=IGI;IMP

GO:0005759 "mitochondrial matrix" evidence=IEA;IDA

ASPGD|ASPL0000043500 AN10237 [Emericella nidulans (taxid:162425)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 55/107 (51%), Positives = 68/107 (63%)

Query:    14 RRQALTLTESAAEXXXXXXXXXXXXXXXXGVKARGCNGLSYTLNYADEKSKFDEVVEDKG 73
             R+ A+ LT  A E                GVK RGC+GL+Y L Y D+   FDEVVE  G
Sbjct:   135 RKAAMKLTPIAVEQLRKLLSQPEPRLIRVGVKNRGCSGLAYHLEYVDKPGTFDEVVEQDG 194

Query:    74 VKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 120
             VK+LID KAL  +IG++MD+ +DKL + FVF NPN K +CGCGESFM
Sbjct:   195 VKVLIDSKALFSIIGSEMDWQEDKLSARFVFRNPNIKEECGCGESFM 241

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0280173 isca1 "iron-sulfur cluster assembly 1 homolog" [Dictyostelium discoideum (taxid:44689)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 46/80 (57%), Positives = 66/80 (82%)

Query:    43 GVKARGCNGLSYTLNYADEKSKFDE-VVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSE 101
             G+K RGC+G+SYTL++A +K+KFDE VV DK + I++D KAL+ VIGT+MD++++ ++ E
Sbjct:    46 GIKERGCSGMSYTLDFATQKNKFDETVVADKDINIIVDSKALLSVIGTEMDYIEEPIKKE 105

Query:   102 FVFINPNSKGQCGCGESFMT 121
             F+FINPN+   CGCGESF T
Sbjct:   106 FIFINPNATNTCGCGESFTT 125

GO:0051536 "iron-sulfur cluster binding" evidence=IEA;IC

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;ISS

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2RM27 ISCA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 59/118 (50%), Positives = 70/118 (59%)

Query:     3 AASGSKVGPAIRRQALTLTESAAEXXXXXXXXX-XXXXXXXGVKARGCNGLSYTLNYADE 61
             A S  K+ P   R ALTLT SA                   GV+ RGCNGLSYTL Y   
Sbjct:    61 AVSKRKLQPT--RAALTLTPSAVNKIKQLLKDKPEHVGLKVGVRTRGCNGLSYTLEYTKT 118

Query:    62 KSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
             K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   119 KGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 176

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F1S4I4 ISCA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 59/118 (50%), Positives = 70/118 (59%)

Query:     3 AASGSKVGPAIRRQALTLTESAAEXXXXXXXXX-XXXXXXXGVKARGCNGLSYTLNYADE 61
             A S  K+ P   R ALTLT SA                   GV+ RGCNGLSYTL Y   
Sbjct:    53 AVSKRKLQPT--RAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKT 110

Query:    62 KSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
             K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   111 KGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 168

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|Q3SZG8 ISCA1 "Iron-sulfur cluster assembly 1 homolog, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 59/118 (50%), Positives = 70/118 (59%)

Query:     3 AASGSKVGPAIRRQALTLTESAAEXXXXXXXXX-XXXXXXXGVKARGCNGLSYTLNYADE 61
             A S  K+ P   R ALTLT SA                   GV+ RGCNGLSYTL Y   
Sbjct:    12 AVSKRKLQPT--RAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKT 69

Query:    62 KSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
             K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:    70 KGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127

GO:0005739 "mitochondrion" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4R5F0	ISCA1_MACFA	No assigned EC number	0.5254	0.8646	0.8914	N/A	no
Q8LBM4	ISAM1_ARATH	No assigned EC number	0.8166	0.9022	0.8759	yes	no
Q3SZG8	ISCA1_BOVIN	No assigned EC number	0.5254	0.8646	0.8914	yes	no
Q54VS1	ISCA1_DICDI	No assigned EC number	0.448	0.9097	0.8705	yes	no
Q8L8C0	ISAM3_ARATH	No assigned EC number	0.7363	0.8195	1.0	no	no
Q80W96	ISCA1_RAT	No assigned EC number	0.5254	0.8646	0.8914	yes	no
Q9BUE6	ISCA1_HUMAN	No assigned EC number	0.5254	0.8646	0.8914	yes	no
Q5ZJ74	ISCA1_CHICK	No assigned EC number	0.5566	0.7894	0.8139	yes	no
Q9D924	ISCA1_MOUSE	No assigned EC number	0.5254	0.8646	0.8914	yes	no
Q4QRC6	ISCA1_DANRE	No assigned EC number	0.5471	0.7894	0.8139	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_VIII0441	hypothetical protein (142 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII0255	cysteine desulfurase/transaminase (EC-2.8.1.7) (452 aa)	•			•			•		0.605
	gw1.IX.3183.1	selenocysteine lyase/cysteine desulfurase (EC-2.8.1.7) (468 aa)	•						•		0.509
	fgenesh4_pg.C_LG_IV000050	hypothetical protein (554 aa)	•			•			•		0.462
	gw1.598.1.1	hypothetical protein (210 aa)	•						•		0.408

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	133
TIGR00049	105	TIGR00049, TIGR00049, Iron-sulfur cluster assembly	2e-49
COG0316	110	COG0316, sufA, Fe-S cluster assembly scaffold prot	5e-44
TIGR02011	105	TIGR02011, IscA, iron-sulfur cluster assembly prot	1e-35
PRK09502	107	PRK09502, iscA, iron-sulfur cluster assembly prote	5e-33
pfam01521	91	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosy	2e-31
TIGR01997	107	TIGR01997, sufA_proteo, FeS assembly scaffold SufA	6e-31
PRK09504	122	PRK09504, sufA, iron-sulfur cluster assembly scaff	2e-24
PRK13623	115	PRK13623, PRK13623, iron-sulfur cluster insertion	2e-23
PLN03082	163	PLN03082, PLN03082, Iron-sulfur cluster assembly;	3e-15
TIGR03341	190	TIGR03341, YhgI_GntY, IscR-regulated protein YhgI	5e-04

>gnl|CDD|232799 TIGR00049, TIGR00049, Iron-sulfur cluster assembly accessory protein

 Score =  152 bits (387), Expect = 2e-49
 Identities = 52/105 (49%), Positives = 75/105 (71%), Gaps = 2/105 (1%)

Query: 19  TLTESAAERLRQLLEQRQRP--FLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKI 76
           TLT+SAA+R++ LL     P   LR+GVK  GC+GL Y L + DE ++ DEV E  GVK+
Sbjct: 1   TLTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKV 60

Query: 77  LIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 121
           ++DPK+L ++ G+++D+V++ L S F F NPN+KG CGCG+SF  
Sbjct: 61  VVDPKSLPYLDGSEIDYVEELLGSGFTFTNPNAKGTCGCGKSFSV 105

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|223393 COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

 Score =  139 bits (352), Expect = 5e-44
 Identities = 50/108 (46%), Positives = 72/108 (66%), Gaps = 2/108 (1%)

Query: 16  QALTLTESAAERLRQLLEQRQRP--FLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKG 73
             +TLT++AA R++ LL +       LR+GVK  GC+G  Y L + DE ++ D V E  G
Sbjct: 3   MMITLTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDG 62

Query: 74  VKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 121
           VK+++DPK+L ++ GT++D+V+D L S F F NPN+K  CGCGESF  
Sbjct: 63  VKVVVDPKSLPYLEGTEIDYVEDLLGSGFTFKNPNAKSSCGCGESFSV 110

Length = 110

>gnl|CDD|213674 TIGR02011, IscA, iron-sulfur cluster assembly protein IscA

 Score =  118 bits (297), Expect = 1e-35
 Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 1/103 (0%)

Query: 18  LTLTESAAERLRQLLEQRQRPF-LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKI 76
           +TLT+SAA R+   L  R + F LRLGVK  GC+G++Y L + DE +  D V EDKGVKI
Sbjct: 1   ITLTDSAAARVNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKI 60

Query: 77  LIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
           +ID K+L ++ GT++DFV + L   F F NPN K +CGCGESF
Sbjct: 61  VIDGKSLQYLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 103

This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|181914 PRK09502, iscA, iron-sulfur cluster assembly protein; Provisional

 Score =  111 bits (279), Expect = 5e-33
 Identities = 51/104 (49%), Positives = 72/104 (69%), Gaps = 1/104 (0%)

Query: 17  ALTLTESAAERLRQLLEQRQRPF-LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVK 75
           ++TL++SAA R+   L  R + F LRLGV+  GC+G++Y L + DE +  D V EDKGVK
Sbjct: 2   SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVK 61

Query: 76  ILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
           +++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct: 62  VVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

Length = 107

>gnl|CDD|110518 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis

 Score =  107 bits (269), Expect = 2e-31
 Identities = 39/91 (42%), Positives = 62/91 (68%), Gaps = 1/91 (1%)

Query: 18  LTLTESAAERLRQLLEQRQRPF-LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKI 76
           +TLT++AA+ +++LL+       LR+GV+  GC+G SY L + DE  + DEV E  GV +
Sbjct: 1   ITLTDAAAKHIKKLLDLEGGENGLRIGVRYGGCSGFSYGLTFEDEPDEGDEVFEQDGVTV 60

Query: 77  LIDPKALMHVIGTKMDFVDDKLRSEFVFINP 107
           ++D K+L ++ GT++DFV++ L S F F NP
Sbjct: 61  VVDEKSLPYLEGTEIDFVEELLGSGFTFSNP 91

This family is involved in iron-sulphur cluster biosynthesis. Its members include proteins that are involved in nitrogen fixation such as the HesB and HesB-like proteins. Length = 91

>gnl|CDD|131052 TIGR01997, sufA_proteo, FeS assembly scaffold SufA

 Score =  106 bits (266), Expect = 6e-31
 Identities = 45/105 (42%), Positives = 69/105 (65%), Gaps = 1/105 (0%)

Query: 16  QALTLTESAAERLRQLLEQR-QRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGV 74
             +TLT++AA  +R+L+ +R +   +RLGVK  GC G+ Y L+   E  K D+++E  G 
Sbjct: 1   AVITLTDAAAIHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGA 60

Query: 75  KILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
           K+ + P+A++ ++GT++DFV   LR  F F NPN+   CGCGESF
Sbjct: 61  KVFVAPEAVLFILGTQVDFVRTTLRQGFKFNNPNATSACGCGESF 105

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 107

>gnl|CDD|181915 PRK09504, sufA, iron-sulfur cluster assembly scaffold protein; Provisional

 Score = 90.2 bits (224), Expect = 2e-24
 Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 1/105 (0%)

Query: 16  QALTLTESAAERLRQLLEQR-QRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGV 74
           Q LTLT +AA  +R+L+ ++     +RLGVK  GC G  Y L+   E  K D V E  G 
Sbjct: 16  QGLTLTPAAAAHIRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGA 75

Query: 75  KILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
           K+ +  +A+  + GT++D+V + L   F F NP ++ +CGCGESF
Sbjct: 76  KLFVPLQAMPFIDGTEVDYVREGLNQIFKFHNPKAQNECGCGESF 120

Length = 122

>gnl|CDD|184186 PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional

 Score = 87.3 bits (217), Expect = 2e-23
 Identities = 36/106 (33%), Positives = 65/106 (61%), Gaps = 2/106 (1%)

Query: 16  QALTLTESAAERLRQLLEQRQRPFLRLGV--KARGCNGLSYTLNYADEKSKFDEVVEDKG 73
             L  T++AA ++++L+E+   P L+L V     GC+G  Y   + ++ ++ D  +E +G
Sbjct: 8   LPLVFTDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQG 67

Query: 74  VKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
           V +++DP +L +++G ++D+ +    S FV  NPN+K  CGCG SF
Sbjct: 68  VTLVVDPMSLQYLVGAEVDYTEGLEGSRFVIKNPNAKTTCGCGSSF 113

Length = 115

>gnl|CDD|215564 PLN03082, PLN03082, Iron-sulfur cluster assembly; Provisional

 Score = 67.6 bits (165), Expect = 3e-15
 Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 8/125 (6%)

Query: 2   AAASGSKVGPAIRRQALTLTESAAERLRQLLEQRQRP-----FLRLGVKARGCNGLSYTL 56
           A+ S S    +    A+ +T++   RL++L  Q   P      LRL V+  GC+G  Y  
Sbjct: 39  ASTSSSSPSSSASLDAVHMTDNCIRRLKEL--QTSEPSAEDKMLRLSVETGGCSGFQYVF 96

Query: 57  NYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVF-INPNSKGQCGC 115
              D+ +  D V E  GVK+++D  +   V G  +D+V++ +RS FV   NP++ G C C
Sbjct: 97  ELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSC 156

Query: 116 GESFM 120
             SFM
Sbjct: 157 KSSFM 161

Length = 163

>gnl|CDD|132384 TIGR03341, YhgI_GntY, IscR-regulated protein YhgI

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 18  LTLTESAAERLRQLLE-QRQRPFLRLGVKARG-----CNGLSYTLNYADEKSKFDEVVED 71
           +T+TE+A   L +LL  Q +   +R+ V   G     C  +SY     DE    D  +E 
Sbjct: 1   ITITEAAQAYLAKLLAKQNEGTGIRVFVVNPGTPYAEC-CVSY--CPPDEVEPSDIKLEF 57

Query: 72  KGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSK 110
            G    +D  +   +    +DFV D++  +     PN+K
Sbjct: 58  NGFSAYVDALSAPFLEDAVIDFVTDRMGGQLTLKAPNAK 96

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
COG0316	110	sufA Fe-S cluster assembly scaffold protein [Postt	100.0
PRK13623	115	iron-sulfur cluster insertion protein ErpA; Provis	100.0
PRK09502	107	iscA iron-sulfur cluster assembly protein; Provisi	100.0
PRK09504	122	sufA iron-sulfur cluster assembly scaffold protein	100.0
PLN03082	163	Iron-sulfur cluster assembly; Provisional	100.0
TIGR01997	107	sufA_proteo FeS assembly scaffold SufA. This model	100.0
TIGR02011	105	IscA iron-sulfur cluster assembly protein IscA. Th	100.0
TIGR00049	105	Iron-sulfur cluster assembly accessory protein. Pr	100.0
KOG1120	134	consensus Fe-S cluster biosynthesis protein ISA1 (	99.97
KOG1119	199	consensus Mitochondrial Fe-S cluster biosynthesis	99.95
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.94
TIGR01911	92	HesB_rel_seleno HesB-like selenoprotein. This mode	99.94
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.93
PF01521	112	Fe-S_biosyn: Iron-sulphur cluster biosynthesis; In	99.93
COG4841	95	Uncharacterized protein conserved in bacteria [Fun	99.77
COG4918	114	Uncharacterized protein conserved in bacteria [Fun	99.04
COG3564	116	Uncharacterized protein conserved in bacteria [Fun	97.71
PF05610	95	DUF779: Protein of unknown function (DUF779); Inte	97.0

>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-37  Score=216.55  Aligned_cols=107  Identities=47%  Similarity=0.824  Sum_probs=102.5

Q ss_pred             CcceeeCHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEE
Q 032819           15 RQALTLTESAAERLRQLLEQRQ--RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMD   92 (133)
Q Consensus        15 ~~~I~IT~~A~~~l~~~l~~~~--~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~ID   92 (133)
                      .++|+|||+|++++++++++++  +.+|||+|+.+||+|++|.|.|++++.++|.+++.+|++|+||+.++.||.|++||
T Consensus         2 ~~~itlT~~Aa~~v~~ll~~~~~~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~g~~v~vD~~S~~~L~G~~ID   81 (110)
T COG0316           2 AMMITLTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPYLEGTEID   81 (110)
T ss_pred             CCceeeCHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeCCEEEEEChhhhhhhcCCEEE
Confidence            5899999999999999999873  45899999999999999999999989999999999999999999999999999999


Q ss_pred             eEeCCCCcceEEECCCCCCCCCCCCCcCC
Q 032819           93 FVDDKLRSEFVFINPNSKGQCGCGESFMT  121 (133)
Q Consensus        93 y~e~~~~~gF~i~nP~~~~~C~CG~Sf~~  121 (133)
                      |+++..+++|+|+|||++..||||+||+.
T Consensus        82 yv~~~~g~~F~~~NPNA~~~CgCg~Sf~v  110 (110)
T COG0316          82 YVEDLLGSGFTFKNPNAKSSCGCGESFSV  110 (110)
T ss_pred             EEEcCcCCceEEECCCCCccccCCCCCCC
Confidence            99999999999999999999999999974

>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional

Probab=100.00  E-value=1.6e-37  Score=217.81  Aligned_cols=109  Identities=31%  Similarity=0.657  Sum_probs=102.1

Q ss_pred             ccCcceeeCHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcE
Q 032819           13 IRRQALTLTESAAERLRQLLEQRQR--PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTK   90 (133)
Q Consensus        13 ~~~~~I~IT~~A~~~l~~~l~~~~~--~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~   90 (133)
                      ...|+|+||++|+++|+++++.++.  .+|||+|+++||+|++|.|.+++++.++|.+++.+|++|+||+.+++||+|++
T Consensus         5 ~~~~~i~iT~~A~~~i~~~~~~~~~~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g~~   84 (115)
T PRK13623          5 DVPLPLVFTDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVGAE   84 (115)
T ss_pred             ccCcceEECHHHHHHHHHHHhhCCCCceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCCCE
Confidence            4569999999999999999976543  46999999999999999999998889999999999999999999999999999


Q ss_pred             EEeEeCCCCcceEEECCCCCCCCCCCCCcCC
Q 032819           91 MDFVDDKLRSEFVFINPNSKGQCGCGESFMT  121 (133)
Q Consensus        91 IDy~e~~~~~gF~i~nP~~~~~C~CG~Sf~~  121 (133)
                      |||+++..+++|+|.|||++++||||+||++
T Consensus        85 IDy~~~~~~~~F~f~NPn~~~~CgCg~SF~~  115 (115)
T PRK13623         85 VDYTEGLEGSRFVIKNPNAKTTCGCGSSFSI  115 (115)
T ss_pred             EEeecCCCcceEEEECCCCCcCCCCCcCccC
Confidence            9999999999999999999999999999974

>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional

Probab=100.00  E-value=3.4e-37  Score=213.81  Aligned_cols=106  Identities=47%  Similarity=0.845  Sum_probs=100.0

Q ss_pred             cceeeCHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeE
Q 032819           16 QALTLTESAAERLRQLLEQRQR-PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFV   94 (133)
Q Consensus        16 ~~I~IT~~A~~~l~~~l~~~~~-~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~   94 (133)
                      |+|+|||+|+++|+++++.++. .+|||+|+++||+|++|.|.|+++++++|.+++.+|++|+||+.++.||+|++|||+
T Consensus         1 m~i~iT~~A~~~i~~l~~~~~~~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~IDy~   80 (107)
T PRK09502          1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFV   80 (107)
T ss_pred             CeEEECHHHHHHHHHHHhCcCCCceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEEEe
Confidence            6799999999999999986543 469999999999999999999888999999999999999999999999999999999


Q ss_pred             eCCCCcceEEECCCCCCCCCCCCCcCC
Q 032819           95 DDKLRSEFVFINPNSKGQCGCGESFMT  121 (133)
Q Consensus        95 e~~~~~gF~i~nP~~~~~C~CG~Sf~~  121 (133)
                      +++.+++|+|.|||++++||||+||+.
T Consensus        81 ~~~~~~~F~f~NPna~~~CgCG~Sf~~  107 (107)
T PRK09502         81 KEGLNEGFKFTNPNVKDECGCGESFHV  107 (107)
T ss_pred             eCCCCceEEEECCCCCCccCCCCCeeC
Confidence            999999999999999999999999974

>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=215.33  Aligned_cols=110  Identities=39%  Similarity=0.687  Sum_probs=103.2

Q ss_pred             cccCcceeeCHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcE
Q 032819           12 AIRRQALTLTESAAERLRQLLEQRQR-PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTK   90 (133)
Q Consensus        12 ~~~~~~I~IT~~A~~~l~~~l~~~~~-~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~   90 (133)
                      ..++|+|+|||+|+++|+++++.++. .+|||.|+++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++
T Consensus        12 ~~~~~~I~iT~~A~~~i~~l~~~~~~~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L~g~~   91 (122)
T PRK09504         12 DFAWQGLTLTPAAAAHIRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFIDGTE   91 (122)
T ss_pred             cCCcCCEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhhCCcE
Confidence            44579999999999999999987653 47999999999999999999998999999999999999999999999999999


Q ss_pred             EEeEeCCCCcceEEECCCCCCCCCCCCCcCC
Q 032819           91 MDFVDDKLRSEFVFINPNSKGQCGCGESFMT  121 (133)
Q Consensus        91 IDy~e~~~~~gF~i~nP~~~~~C~CG~Sf~~  121 (133)
                      |||+++..+++|+|.|||++++||||+||++
T Consensus        92 IDy~~~~~~~gF~f~NPna~~~CgCG~SF~v  122 (122)
T PRK09504         92 VDYVREGLNQIFKFHNPKAQNECGCGESFGV  122 (122)
T ss_pred             EEeecCCCcceEEEECCCCCCCcCCCCCeeC
Confidence            9999999999999999999999999999974

>PLN03082 Iron-sulfur cluster assembly; Provisional

Probab=100.00  E-value=1.4e-36  Score=224.65  Aligned_cols=109  Identities=34%  Similarity=0.671  Sum_probs=102.0

Q ss_pred             cCcceeeCHHHHHHHHHHHhcCC---CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcE
Q 032819           14 RRQALTLTESAAERLRQLLEQRQ---RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTK   90 (133)
Q Consensus        14 ~~~~I~IT~~A~~~l~~~l~~~~---~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~   90 (133)
                      ..+.|+|||+|+++|+++++.++   ..+|||+|+++||+||+|.|.|+++++++|.+++.+|++|+||+.++.||+|++
T Consensus        51 ~~~~I~lTd~A~~~ik~l~~~~~~~~~~~LRl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~Gs~  130 (163)
T PLN03082         51 SLDAVHMTDNCIRRLKELQTSEPSAEDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGAT  130 (163)
T ss_pred             cCCceEECHHHHHHHHHHHHhCCCCCCceEEEEEecCCCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCCCE
Confidence            34689999999999999998764   257999999999999999999998888999999999999999999999999999


Q ss_pred             EEeEeCCCCcceEE-ECCCCCCCCCCCCCcCCC
Q 032819           91 MDFVDDKLRSEFVF-INPNSKGQCGCGESFMTT  122 (133)
Q Consensus        91 IDy~e~~~~~gF~i-~nP~~~~~C~CG~Sf~~~  122 (133)
                      |||++++.+++|+| .|||+.+.||||+||++|
T Consensus       131 IDYve~l~~~gF~f~~NPna~~~CgCG~SF~vk  163 (163)
T PLN03082        131 VDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK  163 (163)
T ss_pred             EEeecCCCCCeeEEecCCCCCCCcCCCCCEeCC
Confidence            99999999999999 999999999999999874

>TIGR01997 sufA_proteo FeS assembly scaffold SufA

Probab=100.00  E-value=9.6e-36  Score=206.48  Aligned_cols=105  Identities=43%  Similarity=0.837  Sum_probs=99.6

Q ss_pred             ceeeCHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeEe
Q 032819           17 ALTLTESAAERLRQLLEQRQR-PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVD   95 (133)
Q Consensus        17 ~I~IT~~A~~~l~~~l~~~~~-~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~e   95 (133)
                      +|+|||+|+++|++++++++. .+|||+|+.+||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||++
T Consensus         2 ~i~iT~~A~~~i~~l~~~~~~~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~   81 (107)
T TIGR01997         2 VITLTDAAAIHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFILGTQVDFVR   81 (107)
T ss_pred             eEEECHHHHHHHHHHHhcCCCCcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecCCEEEEEcHHHHhhhCCCEEEEEE
Confidence            699999999999999987653 4799999999999999999998889999999999999999999999999999999999


Q ss_pred             CCCCcceEEECCCCCCCCCCCCCcCC
Q 032819           96 DKLRSEFVFINPNSKGQCGCGESFMT  121 (133)
Q Consensus        96 ~~~~~gF~i~nP~~~~~C~CG~Sf~~  121 (133)
                      +..+++|+|.|||+++.||||+||+.
T Consensus        82 ~~~~~~F~~~NPn~~~~CgCG~Sf~~  107 (107)
T TIGR01997        82 TTLRQGFKFNNPNATSACGCGESFEL  107 (107)
T ss_pred             cCCcceEEEECCCCCCccCCCCCccC
Confidence            99999999999999999999999973

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.

>TIGR02011 IscA iron-sulfur cluster assembly protein IscA

Probab=100.00  E-value=8.2e-36  Score=206.20  Aligned_cols=104  Identities=52%  Similarity=0.863  Sum_probs=98.6

Q ss_pred             eeeCHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeEeC
Q 032819           18 LTLTESAAERLRQLLEQRQR-PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDD   96 (133)
Q Consensus        18 I~IT~~A~~~l~~~l~~~~~-~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~e~   96 (133)
                      |+|||+|+++|++++++++. .+|||+|+.+||+|++|.|.|+++++++|.+++.+|++|+||+.++.||+|++|||+++
T Consensus         1 I~iT~~A~~~i~~~~~~~~~~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~~   80 (105)
T TIGR02011         1 ITLTDSAAARVNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFVKE   80 (105)
T ss_pred             CEECHHHHHHHHHHHhccCCCceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEEecC
Confidence            68999999999999987643 57999999999999999999988899999999999999999999999999999999999


Q ss_pred             CCCcceEEECCCCCCCCCCCCCcCC
Q 032819           97 KLRSEFVFINPNSKGQCGCGESFMT  121 (133)
Q Consensus        97 ~~~~gF~i~nP~~~~~C~CG~Sf~~  121 (133)
                      ..+++|+|.|||++++||||+||++
T Consensus        81 ~~~~~F~~~nPna~~~CgCg~Sf~~  105 (105)
T TIGR02011        81 GLNEGFKFTNPNVKDECGCGESFHV  105 (105)
T ss_pred             CCcceEEEECCCCCccCCCCCCccC
Confidence            9999999999999999999999974

This clade is limited to the proteobacteria.

>TIGR00049 Iron-sulfur cluster assembly accessory protein

Probab=100.00  E-value=1.6e-34  Score=198.93  Aligned_cols=103  Identities=50%  Similarity=0.884  Sum_probs=97.8

Q ss_pred             eeCHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeEeC
Q 032819           19 TLTESAAERLRQLLEQRQR--PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDD   96 (133)
Q Consensus        19 ~IT~~A~~~l~~~l~~~~~--~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~e~   96 (133)
                      +|||+|++||++++++++.  .+|||+++.+||+|++|.|.|+++++++|.+++.+|++|+||+.+++||+|++|||.++
T Consensus         1 ~iT~~A~~~l~~~~~~~~~~~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~gi~~~id~~~~~~l~~~~IDy~~~   80 (105)
T TIGR00049         1 TLTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPYLDGSEIDYVEE   80 (105)
T ss_pred             CcCHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcCCEEEEEeHHHHhhhCCCEEEEeec
Confidence            6999999999999988764  58999999999999999999987788999999999999999999999999999999999


Q ss_pred             CCCcceEEECCCCCCCCCCCCCcCC
Q 032819           97 KLRSEFVFINPNSKGQCGCGESFMT  121 (133)
Q Consensus        97 ~~~~gF~i~nP~~~~~C~CG~Sf~~  121 (133)
                      ..+++|+|.|||+.++||||+||++
T Consensus        81 ~~~~~f~i~nPn~~~~c~cg~sf~~  105 (105)
T TIGR00049        81 LLGSGFTFTNPNAKGTCGCGKSFSV  105 (105)
T ss_pred             CCcceEEEECCCCCccCCCCcCccC
Confidence            9999999999999999999999974

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.

>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.6e-30  Score=182.78  Aligned_cols=114  Identities=62%  Similarity=1.026  Sum_probs=106.2

Q ss_pred             CCCCcccCcceeeCHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhcc
Q 032819            8 KVGPAIRRQALTLTESAAERLRQLLEQRQ-RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHV   86 (133)
Q Consensus         8 ~~~~~~~~~~I~IT~~A~~~l~~~l~~~~-~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L   86 (133)
                      ....++.+.-|++||.|+++|++++++++ ...|||.|+..||+|++|.|.+..++...|++++.+|++|+||+.++-.|
T Consensus        20 ~~~~~~~k~~ltLTp~Av~~ik~ll~~~~e~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv~I~ie~KA~l~l   99 (134)
T KOG1120|consen   20 ARKLAPRKAALTLTPSAVNHIKQLLSDKPEDVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGVRIFIEPKALLTL   99 (134)
T ss_pred             cccccccccccccCHHHHHHHHHHHHhCCcCceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCcEEEEcccceeee
Confidence            34456667999999999999999999765 57899999999999999999999888899999999999999999999999


Q ss_pred             CCcEEEeEeCCCCcceEEECCCCCCCCCCCCCcCC
Q 032819           87 IGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT  121 (133)
Q Consensus        87 ~g~~IDy~e~~~~~gF~i~nP~~~~~C~CG~Sf~~  121 (133)
                      -|+++||+++.++++|+|.|||+++.||||.||+.
T Consensus       100 iGteMDyvddkL~Sefvf~npna~gtcGcgeSf~~  134 (134)
T KOG1120|consen  100 IGTEMDYVDDKLSSEFVFSNPNAKGTCGCGESFSV  134 (134)
T ss_pred             ccceehhhhhhhcCceEeeCCCccccccccccccC
Confidence            99999999999999999999999999999999974

>KOG1119 consensus Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain) [Energy production and conversion; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.8e-28  Score=179.67  Aligned_cols=106  Identities=31%  Similarity=0.653  Sum_probs=100.4

Q ss_pred             cceeeCHHHHHHHHHHHhcCCCCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeEe
Q 032819           16 QALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVD   95 (133)
Q Consensus        16 ~~I~IT~~A~~~l~~~l~~~~~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~e   95 (133)
                      ..++|++.|.++++++.+..+ ..|||.|++|||+||+|.|.||....++|.+++-+|.+|+||..++.|++|++|||.+
T Consensus        92 ~~~~lsds~~krl~EI~~~~p-e~LRl~VegGGCsGFQYkf~LD~~in~dD~vf~e~~arVVvD~~SL~~~kGatvdy~~  170 (199)
T KOG1119|consen   92 FNLHLSDSCSKRLKEIYENSP-EFLRLTVEGGGCSGFQYKFRLDNKINNDDRVFVENGARVVVDNVSLNLLKGATVDYTN  170 (199)
T ss_pred             ceEEehhHHHHHHHHHHhCCc-ceEEEEEecCCccceEEEEEecCCCCCcceEEeeCCcEEEEeccchhhccCceeehHH
Confidence            679999999999999988765 6899999999999999999999888899999999999999999999999999999999


Q ss_pred             CCCCcceEE-ECCCCCCCCCCCCCcCCC
Q 032819           96 DKLRSEFVF-INPNSKGQCGCGESFMTT  122 (133)
Q Consensus        96 ~~~~~gF~i-~nP~~~~~C~CG~Sf~~~  122 (133)
                      ++.++.|+| .||.++.+||||+||+++
T Consensus       171 ELIrSsF~ivnNP~A~~gCsCgSSF~ik  198 (199)
T KOG1119|consen  171 ELIRSSFRIVNNPSAKQGCSCGSSFDIK  198 (199)
T ss_pred             HHhhhhheeecCcccccCCCCCcccccC
Confidence            999999987 689999999999999986

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.94  E-value=2.6e-26  Score=173.93  Aligned_cols=95  Identities=22%  Similarity=0.361  Sum_probs=89.1

Q ss_pred             ceeeCHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeee--cccCCCCCEEEEeCCeEEEEcccchhccCCcEEEe
Q 032819           17 ALTLTESAAERLRQLLEQRQR-PFLRLGVKARGCNGLSYTLNY--ADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDF   93 (133)
Q Consensus        17 ~I~IT~~A~~~l~~~l~~~~~-~~LRi~v~~~GC~G~~~~l~l--~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy   93 (133)
                      ||+|||+|+++|++++++++. .+|||+|+++||+|++|+|.+  ++++.++|.+++.+|++|+||+.++.||+|++|||
T Consensus         1 ~i~iTd~A~~~i~~ll~~~~~~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~IDy   80 (192)
T PRK11190          1 MITISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEIDF   80 (192)
T ss_pred             CcEECHHHHHHHHHHHhcCCCCceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEEEE
Confidence            689999999999999987653 479999999999999999999  67788999999999999999999999999999999


Q ss_pred             EeCCCCcceEEECCCCCC
Q 032819           94 VDDKLRSEFVFINPNSKG  111 (133)
Q Consensus        94 ~e~~~~~gF~i~nP~~~~  111 (133)
                      +++..+++|+|.|||++.
T Consensus        81 ve~~~g~gF~f~NPNa~~   98 (192)
T PRK11190         81 VTDQLGSQLTLKAPNAKM   98 (192)
T ss_pred             eecCCCCceEEECCCCCC
Confidence            999999999999999975

>TIGR01911 HesB_rel_seleno HesB-like selenoprotein

Probab=99.94  E-value=3.6e-26  Score=154.90  Aligned_cols=89  Identities=17%  Similarity=0.366  Sum_probs=82.8

Q ss_pred             cceeeCHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEe
Q 032819           16 QALTLTESAAERLRQLLEQRQR--PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDF   93 (133)
Q Consensus        16 ~~I~IT~~A~~~l~~~l~~~~~--~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy   93 (133)
                      .||+|||+|+++|++++++++.  .+|||+|+++||+|++|.|.+++ ++++|.+++.+|++|+||+.++.||.|++|||
T Consensus         2 ~~i~lT~~A~~~i~~ll~~~~~~~~~LRi~v~~gGCsG~~Y~~~ld~-~~~~D~v~~~~gv~v~vD~~s~~~l~G~~iDy   80 (92)
T TIGR01911         2 KIVAMSDDAYEEFKDFLKENDIDNDVIRIHFAGMGCMGPMFNLIADE-EKEGDEIEKIHDLTFLIDKNLIDQFGGFSIEC   80 (92)
T ss_pred             CceEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCccCcccceEecC-CCCCCEEEEeCCEEEEECHHHHHHhCCCEEEE
Confidence            5899999999999999987654  36999999999999999999976 58999999999999999999999999999999


Q ss_pred             EeCCCCcceEEE
Q 032819           94 VDDKLRSEFVFI  105 (133)
Q Consensus        94 ~e~~~~~gF~i~  105 (133)
                      +++..+++|+|+
T Consensus        81 ~~~~~g~gF~~~   92 (92)
T TIGR01911        81 AEENFGAGFSLD   92 (92)
T ss_pred             ecCCCCCcEEeC
Confidence            999999999984

This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.93  E-value=3.7e-25  Score=167.43  Aligned_cols=94  Identities=26%  Similarity=0.348  Sum_probs=87.6

Q ss_pred             eeeCHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeee--cccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeE
Q 032819           18 LTLTESAAERLRQLLEQRQR-PFLRLGVKARGCNGLSYTLNY--ADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFV   94 (133)
Q Consensus        18 I~IT~~A~~~l~~~l~~~~~-~~LRi~v~~~GC~G~~~~l~l--~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~   94 (133)
                      |+|||+|+++|+++++.++. .+|||+|+++||+|++|+|.+  ++++.++|.+++.+|++|+||+.++.||+|++|||+
T Consensus         1 I~IT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~IDyv   80 (190)
T TIGR03341         1 ITITEAAQAYLAKLLAKQNEGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVIDFV   80 (190)
T ss_pred             CEECHHHHHHHHHHHhhCCCCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEEEe
Confidence            68999999999999987653 479999999999999999999  567789999999999999999999999999999999


Q ss_pred             eCCCCcceEEECCCCCC
Q 032819           95 DDKLRSEFVFINPNSKG  111 (133)
Q Consensus        95 e~~~~~gF~i~nP~~~~  111 (133)
                      ++..+++|+|.|||++.
T Consensus        81 e~~~g~gF~f~NPna~~   97 (190)
T TIGR03341        81 TDRMGGQLTLKAPNAKM   97 (190)
T ss_pred             ecCCCceeEEeCCccCC
Confidence            99999999999999964

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein

Probab=99.93  E-value=1.7e-25  Score=155.21  Aligned_cols=101  Identities=40%  Similarity=0.701  Sum_probs=93.9

Q ss_pred             cceeeCHHHHHHHHHHHhcCCCCcEEEEEecCC--------CC-CceeeeeecccC-CCCCEEEEeCCeEEEEcccchhc
Q 032819           16 QALTLTESAAERLRQLLEQRQRPFLRLGVKARG--------CN-GLSYTLNYADEK-SKFDEVVEDKGVKILIDPKALMH   85 (133)
Q Consensus        16 ~~I~IT~~A~~~l~~~l~~~~~~~LRi~v~~~G--------C~-G~~~~l~l~~~~-~~~D~v~~~~gi~v~id~~~~~~   85 (133)
                      |.|+|||+|+++|++++.+++.. |||+++.+|        |+ |++|.|.+++++ .+.|.+++.++++|+|++.+++|
T Consensus         1 M~I~iT~~A~~~l~~~~~~~~~~-irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~~~~i~i~~~~~~~   79 (112)
T PF01521_consen    1 MKITITDAAAERLKQLLKEDPKK-IRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESNGFTIYIDKYSLWY   79 (112)
T ss_dssp             -EEEE-HHHHHHHHHHHHCTTES-EEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEETTEEEEEEGGGHHH
T ss_pred             CEEEECHHHHHHHHHHHhcCCCE-EEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeeeEEEEEEeccHhhh
Confidence            89999999999999999988755 999999998        99 999999999877 79999999999999999999999


Q ss_pred             c-CCcEEEeEeCCCCcceEEECCCCCCCCCCCC
Q 032819           86 V-IGTKMDFVDDKLRSEFVFINPNSKGQCGCGE  117 (133)
Q Consensus        86 L-~g~~IDy~e~~~~~gF~i~nP~~~~~C~CG~  117 (133)
                      | ++++|||.++..+.+|++.||+..+.|+||.
T Consensus        80 l~~~~~iD~~~~~~~~~f~~~~~~~~~~~~~~~  112 (112)
T PF01521_consen   80 LDEGLTIDYVEDLGGFGFKSDNPNLDSNCGCGD  112 (112)
T ss_dssp             H-TTEEEEEEEETTEEEEEEETTTEEEEECECE
T ss_pred             hhCCCEEEEEEccCccEEEECCCCcCceeccCC
Confidence            9 8999999999999999999999999999984

They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.

>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.77  E-value=1e-18  Score=116.07  Aligned_cols=88  Identities=20%  Similarity=0.322  Sum_probs=75.3

Q ss_pred             cceeeCHHHHHHHHHHHhcCCCCcEEEEEecCCCC----CceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCC--c
Q 032819           16 QALTLTESAAERLRQLLEQRQRPFLRLGVKARGCN----GLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIG--T   89 (133)
Q Consensus        16 ~~I~IT~~A~~~l~~~l~~~~~~~LRi~v~~~GC~----G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g--~   89 (133)
                      |+|+||+.|++|+++.+....+..||++|+.|||+    ||+.++..+ .|++--...+.+|++|+|...++||+++  +
T Consensus         1 Mni~vtd~A~~wfk~E~~l~~g~~vrffvRyGG~~~~~~GFS~gv~~e-~PkE~g~~q~~Dgltffiee~DlWYF~d~d~   79 (95)
T COG4841           1 MNIEVTDQALKWFKEELDLEEGNKVRFFVRYGGCSSLQQGFSLGVAKE-VPKEIGYKQEYDGLTFFIEEKDLWYFDDHDL   79 (95)
T ss_pred             CceEEcHHHHHHHHHhcCCCCCCEEEEEEEEcCcccccCCcceeeecc-CchhhchheeecCeEEEEecCceEEEcCCcE
Confidence            89999999999999999999889999999999998    544544432 4666556678999999999999999997  9


Q ss_pred             EEEeEeCCCCcceEE
Q 032819           90 KMDFVDDKLRSEFVF  104 (133)
Q Consensus        90 ~IDy~e~~~~~gF~i  104 (133)
                      +|||.++.....|..
T Consensus        80 ~v~y~~~~Dei~fs~   94 (95)
T COG4841          80 KVDYSPDTDEISFSY   94 (95)
T ss_pred             EEeccCCCCcceeec
Confidence            999999888777754

>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.04  E-value=4.2e-10  Score=76.92  Aligned_cols=82  Identities=18%  Similarity=0.233  Sum_probs=65.1

Q ss_pred             cceeeCHHHHHHHHHHHhcCCC--CcEEEEEecCCCCC-ceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCC-cEE
Q 032819           16 QALTLTESAAERLRQLLEQRQR--PFLRLGVKARGCNG-LSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIG-TKM   91 (133)
Q Consensus        16 ~~I~IT~~A~~~l~~~l~~~~~--~~LRi~v~~~GC~G-~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g-~~I   91 (133)
                      |+|++|+.|+++|+........  ..+|...++.||.| -.+.++++.+....|..++.|+.++||-.....||++ ++|
T Consensus         1 M~Itftd~a~~~l~~a~d~nl~~~~hl~ydtEgc~Ca~SGi~t~rlvae~tg~d~~idsn~gPiyik~~~~~Ff~D~mti   80 (114)
T COG4918           1 MKITFTDKAADKLKAAGDVNLVFDDHLLYDTEGCACAGSGISTYRLVAEETGFDASIDSNFGPIYIKDYGSYFFQDEMTI   80 (114)
T ss_pred             CeEEecHHHHHHHHHhhccCcCccceEEEeccccccccCCcceEEEEEeccCcccccccCCCcEEEEecceeEecceeee
Confidence            7899999999999988876543  34554444555543 2567777777778999999999999999999999985 999


Q ss_pred             EeEeCC
Q 032819           92 DFVDDK   97 (133)
Q Consensus        92 Dy~e~~   97 (133)
                      ||.+..
T Consensus        81 dyN~~~   86 (114)
T COG4918          81 DYNPSY   86 (114)
T ss_pred             ecCCcc
Confidence            999764

>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.71  E-value=0.00041  Score=47.45  Aligned_cols=91  Identities=19%  Similarity=0.169  Sum_probs=63.5

Q ss_pred             CcceeeCHHHHHHHHHHHhcCCCCcEEEEEecCCCCCceeeeeec--c-cCCCCCEEE-EeCCeEEEEcccchhccC--C
Q 032819           15 RQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYA--D-EKSKFDEVV-EDKGVKILIDPKALMHVI--G   88 (133)
Q Consensus        15 ~~~I~IT~~A~~~l~~~l~~~~~~~LRi~v~~~GC~G~~~~l~l~--~-~~~~~D~v~-~~~gi~v~id~~~~~~L~--g   88 (133)
                      ...++.|++|++-|.++..+.+.   -+|-+++||+.-+--|-.-  + -..++|+.+ +++|++|||...+..+-+  .
T Consensus         4 ~~~V~aT~aAl~Li~~l~~~hgp---vmFHQSGGCCDGSsPMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWKHTq   80 (116)
T COG3564           4 PARVLATPAALDLIAELQAEHGP---VMFHQSGGCCDGSSPMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWKHTQ   80 (116)
T ss_pred             CcceecCHHHHHHHHHHHHhcCC---EEEeccCCccCCCCCccccccceeecCCceEEeeeCCEEEEecCcHHhhhhccE
Confidence            45689999999999988887652   3555788886222222221  0 124567766 789999999999987777  5


Q ss_pred             cEEEeEeCCCCcceEEECCCC
Q 032819           89 TKMDFVDDKLRSEFVFINPNS  109 (133)
Q Consensus        89 ~~IDy~e~~~~~gF~i~nP~~  109 (133)
                      +.||.++. .+..|.+.|-..
T Consensus        81 LIIDVVpG-RGGmFSLdng~E  100 (116)
T COG3564          81 LIIDVVPG-RGGMFSLDNGRE  100 (116)
T ss_pred             EEEEEecC-CCceeEccCCcc
Confidence            99999865 566788876443

>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function

Probab=97.00  E-value=0.0045  Score=42.06  Aligned_cols=68  Identities=19%  Similarity=0.242  Sum_probs=49.0

Q ss_pred             EEEecCCCCCceeeeeec--c-cCCCCCEEE-EeCCeEEEEcccchhccCC--cEEEeEeCCCCcceEEECCCCC
Q 032819           42 LGVKARGCNGLSYTLNYA--D-EKSKFDEVV-EDKGVKILIDPKALMHVIG--TKMDFVDDKLRSEFVFINPNSK  110 (133)
Q Consensus        42 i~v~~~GC~G~~~~l~l~--~-~~~~~D~v~-~~~gi~v~id~~~~~~L~g--~~IDy~e~~~~~gF~i~nP~~~  110 (133)
                      +|-.++||+.-+-=|-+.  + ...+.|+.+ ++.|++|+|++++..|.+.  ++||.++ ..+.+|.+.+|...
T Consensus        14 mFhQSGGCCDGSaPmC~p~gef~~g~~DV~LG~i~g~~fym~~~qfeywkht~L~iDVv~-GrG~~FSLE~~~G~   87 (95)
T PF05610_consen   14 MFHQSGGCCDGSAPMCYPAGEFRVGDSDVLLGEIGGVPFYMSKDQFEYWKHTQLTIDVVP-GRGGGFSLEAPEGK   87 (95)
T ss_pred             EEEeCCCCCCCCcceeEeCCceecCCCcEEEEEecCeEEEEchHHHHHhhCcEEEEEEEe-cCCCeeeccCCCCc
Confidence            455788987223222221  1 124667766 7899999999999999995  9999887 46788999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
1r94_A	118	Crystal Structure Of Isca (mercury Derivative) Leng		8e-19
1s98_A	107	E.Coli Isca Crystal Structure To 2.3 A Length = 107		2e-18
2d2a_A	145	Crystal Structure Of Escherichia Coli Sufa Involved		3e-13
1nwb_A	124	Solution Nmr Structure Of Protein Aq_1857 From Aqui		1e-12
2apn_A	114	Hi1723 Solution Structure Length = 114		9e-11
1x0g_A	112	Crystal Structure Of Isca With The [2fe-2s] Cluster		4e-05

>pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative) Length = 118

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 54/77 (70%)
Query: 43  GVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEF 102
           GV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F
Sbjct: 29  GVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGF 88
Query: 103 VFINPNSKGQCGCGESF 119
            F NPN K +CGCGESF
Sbjct: 89  KFTNPNVKDECGCGESF 105

>pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A Length = 107

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 54/77 (70%)
Query: 43  GVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEF 102
           GV+  GC+G++Y L + DE +  D V EDKGVK+++D K++  + GT++DFV + L   F
Sbjct: 29  GVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLDFVKEGLNEGF 88
Query: 103 VFINPNSKGQCGCGESF 119
            F NPN K +CGCGESF
Sbjct: 89  KFTNPNVKDECGCGESF 105

>pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In Biosynthesis Of Iron-Sulfur Clusters Length = 145

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 16  QALTLTESAA-EXXXXXXXXXXXXXXXXGVKARGCNGLSYTLNYADEKSKFDEVVEDKGV 74
           Q LTLT +AA                  GVK  GC G  Y L+   E  K D + E  G 
Sbjct: 39  QGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGA 98
Query: 75  KILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
           K+ +  +A+  + GT++DFV + L   F F NP ++ +CGCGESF
Sbjct: 99  KLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESF 143

>pdb|1NWB|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex Aeolicus: Northeast Structural Genomics Consortium Target Qr6 Length = 124

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 48  GCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINP 107
           GC+G  Y + + D   + D V E  GVK++IDP ++ +V G ++D+V D +   F   NP
Sbjct: 42  GCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNP 101
Query: 108 NSKGQCGCGESF 119
           N+ G CGCG SF
Sbjct: 102 NATGSCGCGSSF 113

>pdb|2APN|A Chain A, Hi1723 Solution Structure Length = 114

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 44  VKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFV 103
           +   GC+G  Y   + ++ +  D  +E  GV+++IDP +L ++IG  +D+ +    S F 
Sbjct: 37  ITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFT 96
Query: 104 FINPNSKGQCGCGESF 119
             NPN+   CGCG SF
Sbjct: 97  VNNPNATSTCGCGSSF 112

>pdb|1X0G|A Chain A, Crystal Structure Of Isca With The [2fe-2s] Cluster Length = 112

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 44  VKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFV 103
           V+   C    Y L    E    D + + +G  I I  +A   + G ++D+++D +   F 
Sbjct: 32  VQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRVDYIEDLMGGAFR 91
Query: 104 FINPNSKGQCGCGESFMTTSS 124
           F NPN+   CGCG +F  + S
Sbjct: 92  FHNPNASQTCGCGMAFRVSRS 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	1e-58
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	2e-58
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	2e-48
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	2e-43
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	1e-41
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	1e-37
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} Length = 145

 Score =  177 bits (450), Expect = 1e-58
 Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 1/106 (0%)

Query: 16  QALTLTESAAERLRQLLEQRQRPF-LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGV 74
           Q LTLT +AA  +R+L+ ++     +RLGVK  GC G  Y L+   E  K D + E  G 
Sbjct: 39  QGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGA 98

Query: 75  KILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 120
           K+ +  +A+  + GT++DFV + L   F F NP ++ +CGCGESF 
Sbjct: 99  KLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFG 144

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A Length = 118

 Score =  175 bits (447), Expect = 2e-58
 Identities = 50/111 (45%), Positives = 74/111 (66%), Gaps = 1/111 (0%)

Query: 17  ALTLTESAAERLRQLLEQRQRP-FLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVK 75
           ++TL++SAA R+   L  R +   LRLGV+  GC+G++Y L + DE +  D V EDKGVK
Sbjct: 2   SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVK 61

Query: 76  ILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSAE 126
           +++D K+L  + GT++DFV + L   F F NPN K +CGCGESF   ++ +
Sbjct: 62  VVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKLAAALD 112

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} Length = 112

 Score =  150 bits (380), Expect = 2e-48
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 4/111 (3%)

Query: 18  LTLTESAAERLRQLLEQRQRP----FLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKG 73
           + LT +A + L +L     R      LR+ V+   C    Y L    E    D + + +G
Sbjct: 2   VELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQG 61

Query: 74  VKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSS 124
             I I  +A   + G ++D+++D +   F F NPN+   CGCG +F  + S
Sbjct: 62  WTIAIAAEAAELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRVSRS 112

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} Length = 114

 Score =  137 bits (347), Expect = 2e-43
 Identities = 34/104 (32%), Positives = 60/104 (57%), Gaps = 2/104 (1%)

Query: 18  LTLTESAAERLRQLLEQRQRP--FLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVK 75
           LT T++AA +++ L+ + +     LR+ +   GC+G  Y   + ++ +  D  +E  GV+
Sbjct: 9   LTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQ 68

Query: 76  ILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
           ++IDP +L ++IG  +D+ +    S F   NPN+   CGCG SF
Sbjct: 69  LVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSF 112

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1 Length = 124

 Score =  133 bits (336), Expect = 1e-41
 Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 18  LTLTESAAERLRQLLEQRQRP--FLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVK 75
             +T+ A E ++++ ++       LR+ V   GC+G  Y + + D   + D V E  GVK
Sbjct: 10  FKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVK 69

Query: 76  ILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
           ++IDP ++ +V G ++D+V D +   F   NPN+ G CGCG SF
Sbjct: 70  VVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSF 113

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} Length = 125

 Score =  123 bits (310), Expect = 1e-37
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 11  PAIRRQALTLTESAAERLRQLLEQRQRP--FLRLGVKARGCNGLSYTLNYADEKSKFDEV 68
           P        LT +AAE++ +  +Q       LRL         + Y + + D+ ++ D  
Sbjct: 16  PRGSHMMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGF-DDLTEDDIR 74

Query: 69  VEDKGVKILIDPKALMHVIGTKMDFVDD-KLRSEFVFINPNSK 110
           +  +GV+I+I P  +  +  T +D+V+    +  F+F+NP   
Sbjct: 75  LTSEGVEIVIAPDYVSLLDQTTLDYVELEPGQFHFIFLNPRDP 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.1 bits (85), Expect = 8e-04
 Identities = 20/109 (18%), Positives = 30/109 (27%), Gaps = 30/109 (27%)

Query: 21  TESAAERLRQLLEQRQRP--FLRLG-------VKA--RGCNGLSYTLNYADEKSKFDEVV 69
             S    LR+LL+ +      L L          A    C  L  T      K   D + 
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF----KQVTDFLS 282

Query: 70  EDKGVKILIDPKA-----------LMHVIGTKMDFVDDKLRSEFVFINP 107
                 I +D  +           L+  +  +       L  E +  NP
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPREVLTTNP 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	100.0
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	100.0
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	100.0
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	100.0
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	100.0
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	99.96
2p2e_A	128	Putative Fe-S biosynthesis protein; hypothetical p	99.86
2qgo_A	141	Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC	99.83

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A

Probab=100.00  E-value=6.9e-40  Score=229.88  Aligned_cols=109  Identities=46%  Similarity=0.815  Sum_probs=91.7

Q ss_pred             cceeeCHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeE
Q 032819           16 QALTLTESAAERLRQLLEQRQ-RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFV   94 (133)
Q Consensus        16 ~~I~IT~~A~~~l~~~l~~~~-~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~   94 (133)
                      |+|+|||+|+++|++++++++ +.+|||+|+++||+|++|.|.+++++.++|.+++.+|++|+||+.+++||+|++|||.
T Consensus         1 M~I~iT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~L~g~~IDy~   80 (118)
T 1r94_A            1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFV   80 (118)
T ss_dssp             CCCEECHHHHHHHHHHHHHHCCCSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEE
T ss_pred             CceEECHHHHHHHHHHHhhCCCCceEEEEEECCCCCCeEEEEEEccCCCCCceEEEECCEEEEEEHHHHHHhCCCEEEEE
Confidence            799999999999999998754 4689999999999999999999888899999999999999999999999999999999


Q ss_pred             eCCCCcceEEECCCCCCCCCCCCCcCCCCC
Q 032819           95 DDKLRSEFVFINPNSKGQCGCGESFMTTSS  124 (133)
Q Consensus        95 e~~~~~gF~i~nP~~~~~C~CG~Sf~~~~~  124 (133)
                      ++..+++|+|.|||++++||||+||++++.
T Consensus        81 ~~~~g~gF~~~NPna~~~CgCG~SF~~~~~  110 (118)
T 1r94_A           81 KEGLNEGFKFTNPNVKDECGCGESFKLAAA  110 (118)
T ss_dssp             EETTEEEEEEECTTCCC-------------
T ss_pred             cCCCcCceEEeCCCCCCCCCCCCCcCCCCC
Confidence            999999999999999999999999998764

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1

Probab=100.00  E-value=7.8e-40  Score=231.44  Aligned_cols=111  Identities=33%  Similarity=0.678  Sum_probs=88.9

Q ss_pred             cCcceeeCHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEE
Q 032819           14 RRQALTLTESAAERLRQLLEQRQ--RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKM   91 (133)
Q Consensus        14 ~~~~I~IT~~A~~~l~~~l~~~~--~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~I   91 (133)
                      .+|||+|||+|+++|++++++++  +.+|||+|+++||+||+|.|.+++++.++|.+++.+|++|+||+.+++||+|++|
T Consensus         6 ~~m~I~iT~~A~~~l~~ll~~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~I   85 (124)
T 1nwb_A            6 QQFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAEL   85 (124)
T ss_dssp             CCCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCEE
T ss_pred             cCceEEECHHHHHHHHHHHhhCCCCCceEEEEEEcCCCCCcEEEEEEccCCCCCceEEEeCCEEEEEehHHHHHhCCCEE
Confidence            36999999999999999998865  4589999999999999999999987788999999999999999999999999999


Q ss_pred             EeEeCCCCcceEEECCCCCCCCCCCCCcCCCCC
Q 032819           92 DFVDDKLRSEFVFINPNSKGQCGCGESFMTTSS  124 (133)
Q Consensus        92 Dy~e~~~~~gF~i~nP~~~~~C~CG~Sf~~~~~  124 (133)
                      ||.++..+++|+|.|||++.+||||+||++++.
T Consensus        86 Dy~~~~~g~gF~~~NPna~~~CgCG~SF~~~~~  118 (124)
T 1nwb_A           86 DYVVDFMGGGFTIRNPNATGSCGCGSSFSCGLE  118 (124)
T ss_dssp             EEEEETTEEEEEEECC-----------------
T ss_pred             EEEcCCCcceEEEeCCCCCcCCCCCCCcCCCcc
Confidence            999999999999999999999999999998764

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}

Probab=100.00  E-value=2.3e-39  Score=225.15  Aligned_cols=107  Identities=28%  Similarity=0.540  Sum_probs=97.6

Q ss_pred             ceeeCHHHHHHHHHHHhcC-C---CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEE
Q 032819           17 ALTLTESAAERLRQLLEQR-Q---RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMD   92 (133)
Q Consensus        17 ~I~IT~~A~~~l~~~l~~~-~---~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~ID   92 (133)
                      ||+|||+|+++|+++++++ +   +.+|||+|+++||+|++|.|.+++++.++|.+++.+|++|+||+.+++||+|++||
T Consensus         1 mi~iT~~A~~~l~~ll~~~~~~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~l~g~~ID   80 (112)
T 1x0g_A            1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRVD   80 (112)
T ss_dssp             CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSSSCCEEECGGGHHHHTTCEEE
T ss_pred             CeEECHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCCCeEEEEEECcCCCCCCEEEEeCCEEEEEeHHHHHHhCCCEEE
Confidence            6999999999999999876 4   34799999999999999999999877889999999999999999999999999999


Q ss_pred             eEeCCCCcceEEECCCCCCCCCCCCCcCCCC
Q 032819           93 FVDDKLRSEFVFINPNSKGQCGCGESFMTTS  123 (133)
Q Consensus        93 y~e~~~~~gF~i~nP~~~~~C~CG~Sf~~~~  123 (133)
                      |.++..+++|+|.|||+++.||||+||+++.
T Consensus        81 y~~~~~g~gF~~~nPna~~~CgCG~SF~~~~  111 (112)
T 1x0g_A           81 YIEDLMGGAFRFHNPNASQTCGCGMAFRVSR  111 (112)
T ss_dssp             EEEETTEEEEEEECTTCSEECSSSSEEECCC
T ss_pred             EEecCCCCEEEEeCCCCCcCCCCCCccccCC
Confidence            9999999999999999999999999999875

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}

Probab=100.00  E-value=3.9e-38  Score=228.25  Aligned_cols=107  Identities=40%  Similarity=0.689  Sum_probs=101.6

Q ss_pred             CcceeeCHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEe
Q 032819           15 RQALTLTESAAERLRQLLEQRQ-RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDF   93 (133)
Q Consensus        15 ~~~I~IT~~A~~~l~~~l~~~~-~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy   93 (133)
                      +|.|+|||+|+++|++++++++ +.+|||+|+++||+|++|.|.|++++.++|.+++.+|++|+||+.+++||+|++|||
T Consensus        38 ~m~ItiTe~Aa~~lk~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~l~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~IDy  117 (145)
T 2d2a_A           38 WQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDF  117 (145)
T ss_dssp             CCCCEECHHHHHHHHHHHHHSTTCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEE
T ss_pred             cceEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCCcEEEEEECcCCCCCCeEEEECCEEEEEeHHHHHhhCCCEEEE
Confidence            6889999999999999998764 468999999999999999999998888999999999999999999999999999999


Q ss_pred             EeCCCCcceEEECCCCCCCCCCCCCcCC
Q 032819           94 VDDKLRSEFVFINPNSKGQCGCGESFMT  121 (133)
Q Consensus        94 ~e~~~~~gF~i~nP~~~~~C~CG~Sf~~  121 (133)
                      +++..+++|+|.|||++.+||||+||++
T Consensus       118 ~e~l~g~gF~f~NPna~~~CGCG~SF~v  145 (145)
T 2d2a_A          118 VREGLNQIFKFHNPKAQNECGCGESFGV  145 (145)
T ss_dssp             EEETTEEEEEEECTTTCSCCCCBCEEEC
T ss_pred             EcCCCcceEEEeCCCCCcccCCCCCccC
Confidence            9999999999999999999999999974

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}

Probab=100.00  E-value=4.4e-38  Score=219.15  Aligned_cols=108  Identities=31%  Similarity=0.642  Sum_probs=101.1

Q ss_pred             cCcceeeCHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEE
Q 032819           14 RRQALTLTESAAERLRQLLEQRQ--RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKM   91 (133)
Q Consensus        14 ~~~~I~IT~~A~~~l~~~l~~~~--~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~I   91 (133)
                      ..|+|+|||+|+++|++++++++  +.+|||+|+++||+|++|.|.+++++.++|.+++.+|++|+||+.+++||+|++|
T Consensus         5 ~~~~i~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~id~~s~~~l~g~~I   84 (114)
T 2apn_A            5 MAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTV   84 (114)
T ss_dssp             SCCSCEECSHHHHHHHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECSSSEEEECHHHHHHHTTCEE
T ss_pred             CcCcEEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEECCEEEEEehHHHHHhCCCEE
Confidence            45789999999999999998653  4689999999999999999999987778999999999999999999999999999


Q ss_pred             EeEeCCCCcceEEECCCCCCCCCCCCCcCC
Q 032819           92 DFVDDKLRSEFVFINPNSKGQCGCGESFMT  121 (133)
Q Consensus        92 Dy~e~~~~~gF~i~nP~~~~~C~CG~Sf~~  121 (133)
                      ||+++..+++|+|.|||++.+||||+||++
T Consensus        85 Dy~~~~~g~~F~~~nPna~~~CgCG~SF~~  114 (114)
T 2apn_A           85 DYTEGLEGSRFTVNNPNATSTCGCGSSFSI  114 (114)
T ss_dssp             EEECSSSCCEEEEECHHHHCCCCCCCCSCC
T ss_pred             EEEcCCCcceEEEeCCCCCcCCCCCCCccC
Confidence            999999999999999999999999999974

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}

Probab=99.96  E-value=1.1e-28  Score=174.52  Aligned_cols=101  Identities=26%  Similarity=0.408  Sum_probs=93.0

Q ss_pred             CcccCcceeeCHHHHHHHHHHHhcCC--CCcEEEEEe--cCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhcc
Q 032819           11 PAIRRQALTLTESAAERLRQLLEQRQ--RPFLRLGVK--ARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHV   86 (133)
Q Consensus        11 ~~~~~~~I~IT~~A~~~l~~~l~~~~--~~~LRi~v~--~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L   86 (133)
                      ....+|+|+|||+|+++|++++++++  +.+|||+|+  ++|  |++|.|.|+++ .++|.+++.+|++|+||+.+++||
T Consensus        16 ~~~~~m~ItiT~~Aa~~ik~ll~~~~~~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~~~D~v~e~~Gv~v~VD~~s~~~L   92 (125)
T 2k4z_A           16 PRGSHMMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDG--SIDYRMGFDDL-TEDDIRLTSEGVEIVIAPDYVSLL   92 (125)
T ss_dssp             TCCCSSCEEECHHHHHHHHHHHHHSSSTTCEEEEEEEECTTS--CEEEEEEEECC-CSSSCEEECSSCEEECCTTTHHHH
T ss_pred             ccCCCCEEEECHHHHHHHHHHHhhCCCCCceEEEEEEecCCC--CEEEEEEecCC-CCCceEEEECCEEEEEeHHHHHhh
Confidence            45567999999999999999998875  368999999  888  99999999976 889999999999999999999999


Q ss_pred             CCcEEEeEe-CCCCcceEEECCCCCCCCC
Q 032819           87 IGTKMDFVD-DKLRSEFVFINPNSKGQCG  114 (133)
Q Consensus        87 ~g~~IDy~e-~~~~~gF~i~nP~~~~~C~  114 (133)
                      +|++|||.+ +..+++|+|.|||+++.|.
T Consensus        93 ~G~~IDy~~~~l~g~gF~~~NPna~~~~p  121 (125)
T 2k4z_A           93 DQTTLDYVELEPGQFHFIFLNPRDPTYRP  121 (125)
T ss_dssp             TTEEEEEEEEETTEEEEEEECSSSCSSCC
T ss_pred             CCCEEEEEeCCCCcCeEEECCCCCCccCC
Confidence            999999999 9999999999999987774

>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1

Probab=99.86  E-value=1.7e-22  Score=143.26  Aligned_cols=95  Identities=15%  Similarity=0.231  Sum_probs=85.4

Q ss_pred             CcceeeCHHHHHHHHHHHhcCCC-CcEEEEEecC-------CCCC-ceeeeeecccCCC----CCEEEEeCCeEEEEccc
Q 032819           15 RQALTLTESAAERLRQLLEQRQR-PFLRLGVKAR-------GCNG-LSYTLNYADEKSK----FDEVVEDKGVKILIDPK   81 (133)
Q Consensus        15 ~~~I~IT~~A~~~l~~~l~~~~~-~~LRi~v~~~-------GC~G-~~~~l~l~~~~~~----~D~v~~~~gi~v~id~~   81 (133)
                      .|.|+|||+|+++|++++..++. ..||+. +++       ||+| +.|.|.+++++.+    .|.+++.++++|+||+.
T Consensus         2 ~M~ItlT~~A~~~l~~~l~~~~~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~~~~~~~D~~~e~~g~~v~vd~~   80 (128)
T 2p2e_A            2 SLKITVTDDAAKKLQRYTDDSNAVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGY   80 (128)
T ss_dssp             -CEEEECHHHHHHHHHHHTCTTEEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGG
T ss_pred             ccEEEECHHHHHHHHHHHhcCCceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCCCCCCCCCEEEEeCCEEEEECcc
Confidence            37899999999999999998765 468888 555       7999 5999999988877    89999999999999999


Q ss_pred             chhccCC-cEEEeEeCC----CCcc-eEEECCCCC
Q 032819           82 ALMHVIG-TKMDFVDDK----LRSE-FVFINPNSK  110 (133)
Q Consensus        82 ~~~~L~g-~~IDy~e~~----~~~g-F~i~nP~~~  110 (133)
                      ++.||++ ++|||+++.    ++++ |+|.|||++
T Consensus        81 s~~~ldgg~~iDy~~~~~~l~L~s~~f~~~NPN~~  115 (128)
T 2p2e_A           81 SKMYMDDNMKISLNTNNSLLRLTGDNSGELMPALS  115 (128)
T ss_dssp             GGGGSCSEEEEEECSSSSCEEEEETTTEEEEEEEC
T ss_pred             hHHhhCCCeEEEEeCCCceEEecCCccEEECCCCe
Confidence            9999996 999999998    8999 999999986

>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}

Probab=99.83  E-value=1.2e-21  Score=141.10  Aligned_cols=91  Identities=13%  Similarity=0.219  Sum_probs=72.6

Q ss_pred             cCcceeeCHHHHHHHHHHHhcCCCCcE-------EEEEecCCCC-CceeeeeecccCCCC-CEEEEeC-CeEEEEcccch
Q 032819           14 RRQALTLTESAAERLRQLLEQRQRPFL-------RLGVKARGCN-GLSYTLNYADEKSKF-DEVVEDK-GVKILIDPKAL   83 (133)
Q Consensus        14 ~~~~I~IT~~A~~~l~~~l~~~~~~~L-------Ri~v~~~GC~-G~~~~l~l~~~~~~~-D~v~~~~-gi~v~id~~~~   83 (133)
                      .+|.|+|||+|++||+++++.++...|       |+.+.++||+ |+.|.|.+++++.++ |.+++.+ |++|+||+.++
T Consensus         2 ~~M~ItlTd~Aa~~ik~~l~~~~~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~~dyD~~~e~~gGv~v~Vd~~sl   81 (141)
T 2qgo_A            2 SLLNIKFTDNAVDYLKRREILDKILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDFDK   81 (141)
T ss_dssp             --CBEEECHHHHHHHHHTTCTTSEEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHHHH
T ss_pred             cceEEEECHHHHHHHHHHHhhccceeeecCCCceEEEEeCccCCCCCEEEEEEeecCCCCCCEEEEeCCCEEEEECchHH
Confidence            368999999999999999988754568       9999999999 999999999888889 9999999 59999999999


Q ss_pred             hccC-CcEEEeEeCCCCcceEEECCC
Q 032819           84 MHVI-GTKMDFVDDKLRSEFVFINPN  108 (133)
Q Consensus        84 ~~L~-g~~IDy~e~~~~~gF~i~nP~  108 (133)
                      |||+ |++|||.++    .|++++|.
T Consensus        82 ~yLd~G~~IDy~~~----~l~Lks~s  103 (141)
T 2qgo_A           82 TMLGPNMVMDYNAG----SLSLSSDE  103 (141)
T ss_dssp             TTSCSSEEEEEETT----EEEEEETT
T ss_pred             HHhcCCCEEeEECC----EEEEcCCC
Confidence            9999 999999964    67776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1s98a_	97	b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {	2e-29
d1nwba_	101	b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquif	5e-25

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (251), Expect = 2e-29
 Identities = 43/97 (44%), Positives = 65/97 (67%), Gaps = 1/97 (1%)

Query: 17  ALTLTESAAERLRQLLEQRQRPF-LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVK 75
           ++TL++SAA R+   L  R + F LRLGV+  GC+G++Y L + DE +  D V EDKGVK
Sbjct: 1   SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVK 60

Query: 76  ILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQ 112
           +++D K++  + GT++DFV + L   F F NPN K +
Sbjct: 61  VVVDGKSMQFLDGTQLDFVKEGLNEGFKFTNPNVKDE 97

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

 Score = 89.4 bits (221), Expect = 5e-25
 Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 2/97 (2%)

Query: 13  IRRQALTLTESAAERLRQLLEQR--QRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVE 70
            ++    +T+ A E ++++ ++   + P LR+ V   GC+G  Y + + D   + D V E
Sbjct: 5   AQQFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFE 64

Query: 71  DKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINP 107
             GVK++IDP ++ +V G ++D+V D +   F   NP
Sbjct: 65  YDGVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNP 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1s98a_	97	Fe-S scaffold protein IscA (YfhF) {Escherichia col	99.96
d1nwba_	101	Hypothetical protein Aq_1857 {Aquifex aeolicus [Ta	99.95
d2p2ea1	118	Putative Fe-S biosynthesis protein LSL1730 {Lactob	99.13

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.1e-30  Score=172.35  Aligned_cols=95  Identities=44%  Similarity=0.756  Sum_probs=89.8

Q ss_pred             ceeeCHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeEe
Q 032819           17 ALTLTESAAERLRQLLEQRQ-RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVD   95 (133)
Q Consensus        17 ~I~IT~~A~~~l~~~l~~~~-~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~e   95 (133)
                      .|+|||+|+++|++++++++ +.+|||.|+++||+|++|.|.+++++.++|.+++.+|++|+||+.++.||+|++|||.+
T Consensus         1 ~I~iT~~A~~~i~~ll~~~~~~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~G~~IDy~~   80 (97)
T d1s98a_           1 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLDFVK   80 (97)
T ss_dssp             CCEECHHHHHHHHHHHHTTCCCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEEC
T ss_pred             CEEECHHHHHHHHHHHHhCCCCcEEEEEEEcCCCCcceEEeeecccCCCCcEEEEcCCCEEEEeHHHHHHhCCCEEEEee
Confidence            48999999999999999875 45799999999999999999999888899999999999999999999999999999999


Q ss_pred             CCCCcceEEECCCCCC
Q 032819           96 DKLRSEFVFINPNSKG  111 (133)
Q Consensus        96 ~~~~~gF~i~nP~~~~  111 (133)
                      +..+++|+|.|||+++
T Consensus        81 ~~~~~gF~f~NPNak~   96 (97)
T d1s98a_          81 EGLNEGFKFTNPNVKD   96 (97)
T ss_dssp             SSTTCEEEEECTTSCC
T ss_pred             cCCcCceEEECCCCCC
Confidence            9999999999999975

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.95  E-value=6e-29  Score=168.01  Aligned_cols=96  Identities=30%  Similarity=0.598  Sum_probs=89.8

Q ss_pred             cccCcceeeCHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCc
Q 032819           12 AIRRQALTLTESAAERLRQLLEQRQ--RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGT   89 (133)
Q Consensus        12 ~~~~~~I~IT~~A~~~l~~~l~~~~--~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~   89 (133)
                      ..++.||+||++|+++|+++++.++  +.+|||.|+++||+|++|.|.+++++.++|.+++.+|++|+||+.++.||+|+
T Consensus         4 ~~~~~mi~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~D~v~~~~g~~i~id~~s~~~L~G~   83 (101)
T d1nwba_           4 QAQQFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGA   83 (101)
T ss_dssp             CCCCCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTC
T ss_pred             cccCCcEEECHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCceeEEEeeccccccCceEEecCCeeEEECHHHHhHhCCC
Confidence            3456899999999999999998764  35899999999999999999999888899999999999999999999999999


Q ss_pred             EEEeEeCCCCcceEEECC
Q 032819           90 KMDFVDDKLRSEFVFINP  107 (133)
Q Consensus        90 ~IDy~e~~~~~gF~i~nP  107 (133)
                      +|||.++..+++|+|.||
T Consensus        84 ~IDy~~~~~~~~F~f~NP  101 (101)
T d1nwba_          84 ELDYVVDFMGGGFTIRNP  101 (101)
T ss_dssp             EEEEEEETTEEEEEEECC
T ss_pred             EEEEeecCCCCeEEEeCc
Confidence            999999999999999999

>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Putative Fe-S biosynthesis protein LSL1730
species: Lactobacillus salivarius [TaxId: 1624]

Probab=99.13  E-value=1.8e-10  Score=78.66  Aligned_cols=90  Identities=18%  Similarity=0.290  Sum_probs=71.5

Q ss_pred             cceeeCHHHHHHHHHHHhcCCCCcEEEEEe--------cCCCC-Cceeeeeeccc----CCCCCEEEEeCCeEEEEcccc
Q 032819           16 QALTLTESAAERLRQLLEQRQRPFLRLGVK--------ARGCN-GLSYTLNYADE----KSKFDEVVEDKGVKILIDPKA   82 (133)
Q Consensus        16 ~~I~IT~~A~~~l~~~l~~~~~~~LRi~v~--------~~GC~-G~~~~l~l~~~----~~~~D~v~~~~gi~v~id~~~   82 (133)
                      |.|+||++|+++|++.+...+ +.|.|.++        ++||+ |-.|.|.+.++    ..+-|+.++.+-.+|++.+..
T Consensus         1 M~ItiT~~A~~~L~~~~~~~~-~~L~L~~dDG~g~yS~gggC~i~g~f~L~~v~~~~~~~~~yd~~iesn~g~i~~~~~~   79 (118)
T d2p2ea1           1 LKITVTDDAAKKLQRYTDDSN-AVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGYS   79 (118)
T ss_dssp             CEEEECHHHHHHHHHHHTCTT-EEEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGGG
T ss_pred             CEEEECHHHHHHHHHhhCCCC-CEEEEEEeCCCCccccCCccccCCEEEEEEEeCCCCCCcccceeecCCCccEEEcccc
Confidence            789999999999999887654 45777766        45776 55799998754    234578999998899999999


Q ss_pred             hhccC-CcEEEeEeCCCCcceEEECCC
Q 032819           83 LMHVI-GTKMDFVDDKLRSEFVFINPN  108 (133)
Q Consensus        83 ~~~L~-g~~IDy~e~~~~~gF~i~nP~  108 (133)
                      ..||+ +++|||.+.  ..-|++++|+
T Consensus        80 ~~ffd~~m~ld~~~~--~~~l~LkSd~  104 (118)
T d2p2ea1          80 KMYMDDNMKISLNTN--NSLLRLTGDN  104 (118)
T ss_dssp             GGGSCSEEEEEECSS--SSCEEEEETT
T ss_pred             hhhcCCCcEEEEcCC--CCEEEEeCCC
Confidence            99998 599999865  3467777665