Citrus Sinensis ID: 032827

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MEGDDMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYSPYY
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHcccccEEEcccccccccHHHHHHcccccccccEEEEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHccHHHccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MEGDDMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVgnemaskqdpaaggsslanreevdsrsvfvgnvtvkrtnvpgmkqhrprrpnpfmvyqsrgaiippflyspygygkiprfrmpmryspyy
Flexible Loop (DISEMBL)
megddmdmietenkqveldDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSslanreevdsrsvfvgnvtvkrtnvpgmkqhrprrpNPFMVYQSRGAIIPpflyspygygkiprfrmpmryspyy
Low Complexity Region (SEG)
MEGDDMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYSPYY
Disordered region (IsUnstruct)
**********************************************************************FVGNVTV******************FMVYQSRGAIIPPFLYSPYGYGKIPRFRM********
Disordered Region (DISOPRED)
********************MKIRLKEMEE*************************************RSVFVGNVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYS***
Disordered Region (DISEMBL)
********IETENKQVELDDMKIRLKEMEEEATALRQMHAKVGN********************VDSRSVFVGNVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYSPYY
Disordered Region (DISPRO)
*****************LDDMKIRLKEMEEEATALRQMHAKVGNE**************ANREEVDSRSVFVGNVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYSPYY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGDDMDMIExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMASKQDPAAGGSSLANREEVDSRSVFVGNVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYSPYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q28ZX3	225	Polyadenylate-binding pro	yes	no	0.446	0.262	0.491	3e-07
Q7KNF2	224	Polyadenylate-binding pro	yes	no	0.446	0.263	0.475	9e-07
O14327	166	Polyadenylate-binding pro	yes	no	0.454	0.361	0.380	0.0001
Q54ZS8	222	Polyadenylate-binding pro	yes	no	0.537	0.319	0.371	0.0004

>sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 43/61 (70%), Gaps = 2/61 (3%)

Query: 17  ELDDMKIRLKEMEEEATALRQMHAKVGNEMA--SKQDPAAGGSSLANREEVDSRSVFVGN 74
           EL+ +K R+KEMEEEA  ++QM ++V  +MA  S    AA   SL  ++E+D+RSV+VGN
Sbjct: 43  ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGN 102

Query: 75  V 75
           V
Sbjct: 103 V 103

Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Binds to poly(A) and to poly(G) with high affinity. May protect the poly(A) tail from degradation.
Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 2/61 (3%)

Query: 17  ELDDMKIRLKEMEEEATALRQMHAKVGNEMA--SKQDPAAGGSSLANREEVDSRSVFVGN 74
           EL+ +K R+KEMEEEA  ++QM ++V  +MA  S    A    SL  ++E+D+RSV+VGN
Sbjct: 43  ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGN 102

Query: 75  V 75
           V
Sbjct: 103 V 103

Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Binds to poly(A) and to poly(G) with high affinity. May protect the poly(A) tail from degradation.

Drosophila melanogaster (taxid: 7227)

>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)

Query: 5  DMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREE 64
          D D ++T+ K  EL +MK R+ EME EA  LR M  ++ NE  + ++         ++E 
Sbjct: 3  DQDALDTQEK--ELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKES 51

Query: 65 VDSRSVFVGNV 75
          +D++SV+VGNV
Sbjct: 52 IDAQSVYVGNV 62

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 7/78 (8%)

Query: 10  ETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSL-------ANR 62
           ET  +  EL++MK R +EMEEEA  L ++   + + +        GG+          ++
Sbjct: 36  ETSFEDPELEEMKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNTDQ 95

Query: 63  EEVDSRSVFVGNVTVKRT 80
           EE+DSRSV+VGNV  K T
Sbjct: 96  EEIDSRSVYVGNVDYKST 113

Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
224140775	199	predicted protein [Populus trichocarpa]	0.992	0.658	0.424	3e-29
255581746	218	poly-A binding protein, putative [Ricinu	0.878	0.532	0.405	1e-22
356512681	215	PREDICTED: polyadenylate-binding protein	1.0	0.613	0.395	1e-22
217072312	216	unknown [Medicago truncatula] gi|3885014	1.0	0.611	0.388	2e-21
356525457	220	PREDICTED: polyadenylate-binding protein	0.878	0.527	0.402	3e-21
255569758	198	poly-A binding protein, putative [Ricinu	0.530	0.353	0.657	4e-21
224081120	218	predicted protein [Populus trichocarpa]	1.0	0.605	0.384	2e-20
449438769	196	PREDICTED: polyadenylate-binding protein	0.583	0.392	0.65	5e-20
449523199	196	PREDICTED: polyadenylate-binding protein	0.583	0.392	0.65	5e-20
388491820	170	unknown [Medicago truncatula]	0.568	0.441	0.64	4e-19

>gi|224140775|ref|XP_002323754.1| predicted protein [Populus trichocarpa] gi|222866756|gb|EEF03887.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 103/198 (52%), Gaps = 67/198 (33%)

Query: 1   MEGDDMDM--IETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS- 57
           M+GDD+DM  +ET     ELDDMK RLKEME+EA ALR+M AKV  EM S QDP+A  + 
Sbjct: 1   MDGDDVDMAAVETAEAVPELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPSASATA 60

Query: 58  SLANREEVDSRSVFVGNV-----------------TVKRTNVPGMKQHRPR--------- 91
           S AN+EEVDSRSVFVGNV                 TV R  +   K  +P+         
Sbjct: 61  SQANKEEVDSRSVFVGNVDYACTPEEVQQHFQACGTVNRVTIRSDKYGQPKGYAYVEFVE 120

Query: 92  --------------------------------------RPNPFMVYQSRGAIIPPFLYSP 113
                                                 RP+P+M +  R AI+PP+L+SP
Sbjct: 121 PEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRARRPSPYMGFPPRAAIMPPYLFSP 180

Query: 114 YGYGKIPRFRMPMRYSPY 131
           YGYGK+ R+RMPMRYSPY
Sbjct: 181 YGYGKVMRYRMPMRYSPY 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581746|ref|XP_002531675.1| poly-A binding protein, putative [Ricinus communis] gi|223528706|gb|EEF30719.1| poly-A binding protein, putative [Ricinus communis]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 86/180 (47%), Gaps = 64/180 (35%)

Query: 17  ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNV- 75
           ELD+MK RLKEMEEEA ALR+M AKV  EM + QDPA+  ++ AN+EE DSRSVFVGNV 
Sbjct: 39  ELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPASAAANQANKEETDSRSVFVGNVD 98

Query: 76  ----------------TVKRTNVPGMKQHRPR---------------------------- 91
                           TV R  +   K  +P+                            
Sbjct: 99  YACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEVEAIQEALLLNESELHGRQ 158

Query: 92  ----------------RPNPF---MVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYSPYY 132
                           RP  F   M Y+ R   +PP+ YSPYGYGK PRFR PMRY PYY
Sbjct: 159 LKVLPKRTNVPGMKQYRPRRFNPYMGYRFRRPYVPPYFYSPYGYGKAPRFRRPMRYMPYY 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512681|ref|XP_003525045.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 91/197 (46%), Gaps = 65/197 (32%)

Query: 1   MEGD-DMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSL 59
           MEGD DM   + +    ELD+MK RLKEMEEEA ALR+M AKV  E+ S QDPA   +S 
Sbjct: 19  MEGDIDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVDKEIGSVQDPANSAASQ 78

Query: 60  ANREEVDSRSVFVGNV-----------------TVKRTNVPGMKQHRPR----------- 91
           AN+EE DSRSVFVGNV                 TV R  +   K  +P+           
Sbjct: 79  ANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 138

Query: 92  ---------------------------------RPNPF---MVYQSRGAIIPPFLYSPYG 115
                                            RP  F   M Y  R    PP+ YSPYG
Sbjct: 139 AVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYTPPYFYSPYG 198

Query: 116 YGKIPRFRMPMRYSPYY 132
           YGK+PRFR P RY PY+
Sbjct: 199 YGKVPRFRRPNRYMPYH 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072312|gb|ACJ84516.1| unknown [Medicago truncatula] gi|388501418|gb|AFK38775.1| unknown [Medicago truncatula]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/198 (38%), Positives = 93/198 (46%), Gaps = 66/198 (33%)

Query: 1   MEGD-DMDMIETENKQV-ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSS 58
           MEGD DM   + E   + ELD+M+ RLKEMEEEA ALR+MHAKV  E+ S QDPA+  +S
Sbjct: 19  MEGDVDMSAADDEAGGMKELDEMRRRLKEMEEEAAALREMHAKVEKEIGSVQDPASVAAS 78

Query: 59  LANREEVDSRSVFVGNV-----------------TVKRTNVPGMKQHRPR---------- 91
             N+EE D+RSVFVGNV                 TV R  +   K  +P+          
Sbjct: 79  QENKEEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVET 138

Query: 92  ----------------------------------RPNPF---MVYQSRGAIIPPFLYSPY 114
                                             RP  F   M Y  R    PP++YSPY
Sbjct: 139 EAVQEALLLSESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYAPPYMYSPY 198

Query: 115 GYGKIPRFRMPMRYSPYY 132
           GYGK PR+R P RY PYY
Sbjct: 199 GYGKAPRYRRPNRYMPYY 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525457|ref|XP_003531341.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 84/179 (46%), Gaps = 63/179 (35%)

Query: 17  ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNV- 75
           ELD+MK RLKEMEEEA ALR+M AKV  E+ S QDPA   +S AN+EE D+RSVFVGNV 
Sbjct: 42  ELDEMKRRLKEMEEEAAALREMQAKVEKEIGSVQDPANAAASQANKEEADARSVFVGNVD 101

Query: 76  ----------------TVKRTNVPGMKQHRPR---------------------------- 91
                           TV R  +   K  +P+                            
Sbjct: 102 YACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAVQEALLLNESELHGRQ 161

Query: 92  ----------------RPNPFMVYQSRGAIIP--PFLYSPYGYGKIPRFRMPMRYSPYY 132
                           RP  F  Y + G   P  P+LYSPYGYGK+PRFR P RY PYY
Sbjct: 162 LKVLPKRTNVPGMKQYRPRCFNPYMAYGFRRPYTPYLYSPYGYGKVPRFRRPNRYMPYY 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569758|ref|XP_002525843.1| poly-A binding protein, putative [Ricinus communis] gi|223534848|gb|EEF36537.1| poly-A binding protein, putative [Ricinus communis]

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 56/73 (76%), Gaps = 3/73 (4%)

Query: 59  LANREEVDSRSVFVGNVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGK 118
           L N  E+  R +    VT KRTNVPGMKQ RPRRPNP+M +  RG+ +PP+ YSPYGYGK
Sbjct: 128 LLNESELHGRQL---KVTAKRTNVPGMKQFRPRRPNPYMGFAPRGSQLPPYFYSPYGYGK 184

Query: 119 IPRFRMPMRYSPY 131
           +PRFRMPMRYSPY
Sbjct: 185 VPRFRMPMRYSPY 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081120|ref|XP_002306300.1| predicted protein [Populus trichocarpa] gi|222855749|gb|EEE93296.1| predicted protein [Populus trichocarpa]

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/203 (38%), Positives = 94/203 (46%), Gaps = 71/203 (34%)

Query: 1   MEGD------DMDMIETENKQV-ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPA 53
           +EGD      D+DM   ++  V ELD+MK RLKEMEEEA ALR+M AKV  EM + QDPA
Sbjct: 16  VEGDMDPHNADVDMSAADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPA 75

Query: 54  AGGSSLANREEVDSRSVFVGNV-----------------TVKRTNVPGMK---------- 86
              ++ ANREE DSRSVFVGNV                 TV R  +   K          
Sbjct: 76  TAAANQANREEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYV 135

Query: 87  ------------------------QHRPRRPNPFMVYQSRGAIIPPFL------------ 110
                                   +  P+R N   + Q R   I P++            
Sbjct: 136 EFLEVEAVQEALALNESELHGRQLKVSPKRTNVPGMKQYRPRRINPYMGYRFRRPYAPPY 195

Query: 111 -YSPYGYGKIPRFRMPMRYSPYY 132
            YSPYGYGK+PRFR  MRY PYY
Sbjct: 196 FYSPYGYGKVPRFRRSMRYMPYY 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438769|ref|XP_004137160.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 61/80 (76%)

Query: 1  MEGDDMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLA 60
          ME DD+DMI ++    ELDDMK RLK+ME+EA ALR+M AKV  EM+S QDPA+  +S A
Sbjct: 1  MEHDDVDMIGSDANDAELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQA 60

Query: 61 NREEVDSRSVFVGNVTVKRT 80
          NREEVDSRSVFVGNV    T
Sbjct: 61 NREEVDSRSVFVGNVDYSCT 80

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523199|ref|XP_004168611.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 61/80 (76%)

Query: 1  MEGDDMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLA 60
          ME DD+DMI ++    ELDDMK RLK+ME+EA ALR+M AKV  EM+S QDPA+  +S A
Sbjct: 1  MEHDDVDMIGSDANDAELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQA 60

Query: 61 NREEVDSRSVFVGNVTVKRT 80
          NREEVDSRSVFVGNV    T
Sbjct: 61 NREEVDSRSVFVGNVDYSCT 80

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491820|gb|AFK33976.1| unknown [Medicago truncatula]

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 58/75 (77%)

Query: 1  MEGDDMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLA 60
          ME DD+DMI  +N + +LDDMK RLKEME+EA AL++M AKV  EM S QDPA   +S  
Sbjct: 1  MENDDVDMIGADNNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQI 60

Query: 61 NREEVDSRSVFVGNV 75
          NREEVD+RS+FVGNV
Sbjct: 61 NREEVDARSIFVGNV 75

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2142519	217	AT5G10350 [Arabidopsis thalian	0.515	0.313	0.577	9.5e-18
TAIR|locus:2171780	220	AT5G65260 [Arabidopsis thalian	0.515	0.309	0.563	6.7e-17
UNIPROTKB|Q28ZX3	225	Pabp2 "Polyadenylate-binding p	0.446	0.262	0.491	7.3e-11
POMBASE|SPBC16E9.12c	166	pab2 "poly(A) binding protein	0.454	0.361	0.380	1e-10
DICTYBASE|DDB_G0277371	222	pabpn1 "polyadenylate-binding	0.545	0.324	0.417	1.7e-10
FB|FBgn0005648	224	Pabp2 "Pabp2" [Drosophila mela	0.446	0.263	0.475	2.2e-10
UNIPROTKB|F1MTN4	275	PABPN1 "Polyadenylate-binding	0.537	0.258	0.379	6.6e-09
UNIPROTKB|Q6NVP7	296	pabpn1 "Polyadenylate-binding	0.446	0.199	0.387	7.4e-09
UNIPROTKB|G3V7Z8	302	Pabpn1 "Protein Pabpn1" [Rattu	0.560	0.245	0.341	9.6e-09
UNIPROTKB|Q28165	306	PABPN1 "Polyadenylate-binding	0.537	0.232	0.379	1e-08

TAIR|locus:2142519 AT5G10350 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 41/71 (57%), Positives = 48/71 (67%)

Query:    61 NREEVDSRSVFVGNVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIP 120
             N  E+  R +    V+ KRTNVPGMKQ+ P R NP M Y+ R   +PP+ YSPYGYGK P
Sbjct:   149 NESELHGRQL---KVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAP 205

Query:   121 RFRMPMRYSPY 131
             RFR PMRY PY
Sbjct:   206 RFRRPMRYMPY 216

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0008143 "poly(A) RNA binding" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2171780 AT5G65260 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 40/71 (56%), Positives = 48/71 (67%)

Query:    61 NREEVDSRSVFVGNVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIP 120
             N  E+  R +    V  KRTNVPG+KQ R RR NP+M Y+ R   + P++YSPYGYGK P
Sbjct:   152 NESELHGRQL---KVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAP 208

Query:   121 RFRMPMRYSPY 131
             RFR PMRY PY
Sbjct:   209 RFRRPMRYMPY 219

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q28ZX3 Pabp2 "Polyadenylate-binding protein 2" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 132 (51.5 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
 Identities = 30/61 (49%), Positives = 43/61 (70%)

Query:    17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMA--SKQDPAAGGSSLANREEVDSRSVFVGN 74
             EL+ +K R+KEMEEEA  ++QM ++V  +MA  S    AA   SL  ++E+D+RSV+VGN
Sbjct:    43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGN 102

Query:    75 V 75
             V
Sbjct:   103 V 103

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0008143 "poly(A) RNA binding" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

POMBASE|SPBC16E9.12c pab2 "poly(A) binding protein Pab2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 105 (42.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query:     5 DMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREE 64
             D D ++T+ K  EL +MK R+ EME EA  LR M  ++ NE  + ++         ++E 
Sbjct:     3 DQDALDTQEK--ELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKES 51

Query:    65 VDSRSVFVGNV 75
             +D++SV+VGNV
Sbjct:    52 IDAQSVYVGNV 62

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0008143 "poly(A) RNA binding" evidence=IDA

GO:0010972 "negative regulation of G2/M transition of mitotic cell cycle" evidence=IMP

DICTYBASE|DDB_G0277371 pabpn1 "polyadenylate-binding protein 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 127 (49.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
 Identities = 33/79 (41%), Positives = 44/79 (55%)

Query:    10 ETENKQVELDDMKIRLKEMEEEATALRQMHAKV-----GNEMASKQDPAAGGSSLAN--R 62
             ET  +  EL++MK R +EMEEEA  L ++   +     GN          GG  L N  +
Sbjct:    36 ETSFEDPELEEMKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNTDQ 95

Query:    63 EEVDSRSVFVGNVTVKRTN 81
             EE+DSRSV+VGNV  K T+
Sbjct:    96 EEIDSRSVYVGNVDYKSTH 114

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008143 "poly(A) RNA binding" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0005648 Pabp2 "Pabp2" [Drosophila melanogaster (taxid:7227)]

 Score = 128 (50.1 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
 Identities = 29/61 (47%), Positives = 42/61 (68%)

Query:    17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMA--SKQDPAAGGSSLANREEVDSRSVFVGN 74
             EL+ +K R+KEMEEEA  ++QM ++V  +MA  S    A    SL  ++E+D+RSV+VGN
Sbjct:    43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGN 102

Query:    75 V 75
             V
Sbjct:   103 V 103

GO:0008143 "poly(A) RNA binding" evidence=ISS;IDA

GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP;IDA

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0003729 "mRNA binding" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1MTN4 PABPN1 "Polyadenylate-binding protein 2" [Bos taurus (taxid:9913)]

 Score = 113 (44.8 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
 Identities = 30/79 (37%), Positives = 45/79 (56%)

Query:     1 MEGDDMD-MIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS-- 57
             +EGD  D  IE      EL+ +K R++EMEEEA  L+++  +V  +M     P   G   
Sbjct:    74 VEGDPGDGAIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 129

Query:    58 -SLANREEVDSRSVFVGNV 75
              S+  + E D+RS++VGNV
Sbjct:   130 MSIEEKMEADARSIYVGNV 148

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q6NVP7 pabpn1 "Polyadenylate-binding protein 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 111 (44.1 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query:    17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
             EL+ +K R++EMEEEA  L+++  +V  +M     P   G    S+  + E D+RS++VG
Sbjct:   109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 168

Query:    74 NV 75
             NV
Sbjct:   169 NV 170

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0008143 "poly(A) RNA binding" evidence=ISS

UNIPROTKB|G3V7Z8 Pabpn1 "Protein Pabpn1" [Rattus norvegicus (taxid:10116)]

 Score = 114 (45.2 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
 Identities = 28/82 (34%), Positives = 47/82 (57%)

Query:     2 EGDDMDMIETEN-----KQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGG 56
             E ++  ++ET+      +  EL+ +K R++EMEEEA  L+++  +V  +M     P   G
Sbjct:    94 EEEEPGLVETDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAG 153

Query:    57 S---SLANREEVDSRSVFVGNV 75
                 SL  + E D+RS++VGNV
Sbjct:   154 PVIMSLEEKMEADARSIYVGNV 175

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q28165 PABPN1 "Polyadenylate-binding protein 2" [Bos taurus (taxid:9913)]

 Score = 113 (44.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
 Identities = 30/79 (37%), Positives = 45/79 (56%)

Query:     1 MEGDDMD-MIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS-- 57
             +EGD  D  IE      EL+ +K R++EMEEEA  L+++  +V  +M     P   G   
Sbjct:   105 VEGDPGDGAIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160

Query:    58 -SLANREEVDSRSVFVGNV 75
              S+  + E D+RS++VGNV
Sbjct:   161 MSIEEKMEADARSIYVGNV 179

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00170125	hypothetical protein (199 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00030485	hypothetical protein (164 aa)			•						0.467
	grail3.0067008905	hypothetical protein (142 aa)			•						0.435
	gw1.VII.3426.1	hypothetical protein (184 aa)			•						0.433
	grail3.1445000102	annotation not avaliable (101 aa)			•						0.421
	estExt_Genewise1_v1.C_LG_II0296	SubName- Full=Putative uncharacterized protein; (178 aa)			•						0.417
	eugene3.00050727	hypothetical protein (101 aa)			•						0.415
	eugene3.00120066	hypothetical protein (181 aa)			•						0.412
	gw1.IX.3509.1	hypothetical protein (282 aa)			•						0.410
	estExt_fgenesh4_pg.C_LG_VI1354	hypothetical protein (140 aa)			•						0.409
	estExt_fgenesh4_pg.C_280167	hypothetical protein (287 aa)			•						0.406

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG4209	231	consensus Splicing factor RNPS1, SR protein superf	99.6
COG1163	365	DRG Predicted GTPase [General function prediction	87.85
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	80.37

>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]

Probab=99.60  E-value=8.5e-16  Score=124.77  Aligned_cols=112  Identities=32%  Similarity=0.402  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcCCCCCCC---CCCCcccccccCCCceEeccc----------------
Q 032827           15 QVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAA---GGSSLANREEVDSRSVFVGNV----------------   75 (132)
Q Consensus        15 d~ELEemK~Rl~EMEeEA~kLremQ~~vekem~~~~~p~~---~~~t~eek~E~DsRSIYVGNV----------------   75 (132)
                      +-+|++++.++.|+|.++.+|+.||..+++++...+..+.   ...+.+.+.++|++|||||||                
T Consensus        46 ~~~i~~~~~~~~e~e~~i~~le~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~C  125 (231)
T KOG4209|consen   46 NFKISANYNRSSEKEWEITKLERMCPATVKPLMDLSLKAAVVVKEKFPERQKEVDAPSVWVGNVDFLVTLTKIELHFESC  125 (231)
T ss_pred             CcccchhhcccccchhhhHHHHhhchhhhhhhhhcccccchhhhhcchhhhhccCCceEEEeccccccccchhhheeecc
Confidence            7899999999999999999999999999997765443221   236778899999999999999                


Q ss_pred             -------------------------------------------------cccccCCCCCcCCCCCCC-CCCcccCCCCCC
Q 032827           76 -------------------------------------------------TVKRTNVPGMKQHRPRRP-NPFMVYQSRGAI  105 (132)
Q Consensus        76 -------------------------------------------------~~kRtnvPGmkq~r~r~~-~p~~~~~~~~~~  105 (132)
                                                                       ++||||+|||+++.++++ .|.++|+.+.|.
T Consensus       126 g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r~~~pg~~~~~~~~~~~~~~~f~~~~~~  205 (231)
T KOG4209|consen  126 GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKRTNVPGMGRSSPPRRTSPRWTFRLEWPP  205 (231)
T ss_pred             CCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeeeeecCCcCCCCCCcccCCCCccccccCC
Confidence                                                             999999999999998765 356789999988


Q ss_pred             CCCCCC-CCC-CCCCCcccCCCC
Q 032827          106 IPPFLY-SPY-GYGKIPRFRMPM  126 (132)
Q Consensus       106 ~~~~~~-~py-gyg~~pr~r~~~  126 (132)
                      +.++.| +|. |+.+..++|...
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~  228 (231)
T KOG4209|consen  206 MHQFYYRCPKNGSPRRRRYRGRS  228 (231)
T ss_pred             CCcceeeccCCCccccccccccc
Confidence            888876 443 444455555443

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=87.85  E-value=1.4  Score=39.04  Aligned_cols=68  Identities=24%  Similarity=0.401  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHH-----------------HHHHhHHHHHhhhcCCCCCCCCCCCcccccccCCCceEec--cc------
Q 032827           21 MKIRLKEMEEEAT-----------------ALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVG--NV------   75 (132)
Q Consensus        21 mK~Rl~EMEeEA~-----------------kLremQ~~vekem~~~~~p~~~~~t~eek~E~DsRSIYVG--NV------   75 (132)
                      +..++++||+|.+                 +|.+|+.++++....+.. +  ...-.=+++=|++-++||  ||      
T Consensus         4 ieEkIk~iEeeia~tpknKaTe~hig~lKaklA~Lr~El~~~~~~~gg-g--g~gf~V~KsGda~v~lVGfPsvGKStLL   80 (365)
T COG1163           4 IEEKIKAIEEEIARTPKNKATEHHIGLLKAKLAELREELEKRKSKSGG-G--GSGFAVKKSGDATVALVGFPSVGKSTLL   80 (365)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhhhhhcCCC-C--CCcceEeccCCeEEEEEcCCCccHHHHH
Confidence            4556777777753                 355666666653111111 1  134455778899999999  66      


Q ss_pred             --------------cccccCCCCCcCCCCC
Q 032827           76 --------------TVKRTNVPGMKQHRPR   91 (132)
Q Consensus        76 --------------~~kRtnvPGmkq~r~r   91 (132)
                                    =.-.|-||||=.|.|-
T Consensus        81 ~~LTnt~seva~y~FTTl~~VPG~l~Y~ga  110 (365)
T COG1163          81 NKLTNTKSEVADYPFTTLEPVPGMLEYKGA  110 (365)
T ss_pred             HHHhCCCccccccCceecccccceEeecCc
Confidence                          2235668999888765

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=80.37  E-value=1.3  Score=39.38  Aligned_cols=56  Identities=20%  Similarity=0.407  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHhHHHHHhhh--cCCCCCCCCCCCcccccccCCCceEeccc
Q 032827           16 VELDDMKIRLKEMEEEATAL-RQMHAKVGNEM--ASKQDPAAGGSSLANREEVDSRSVFVGNV   75 (132)
Q Consensus        16 ~ELEemK~Rl~EMEeEA~kL-remQ~~vekem--~~~~~p~~~~~t~eek~E~DsRSIYVGNV   75 (132)
                      .-|+++++...|||||++.| +|+-+...-+.  ..-    -.+.-.+...-+|.|.+|||++
T Consensus       148 lqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~e----yQatf~eq~~ml~kRQ~yI~~L  206 (401)
T PF06785_consen  148 LQLDALQQECGEKEEESQTLNRELAEALAYQQELNDE----YQATFVEQHSMLDKRQAYIGKL  206 (401)
T ss_pred             HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH----hhcccccchhhhHHHHHHHHHH
Confidence            46888999999999999876 45443332111  100    0112334556789999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	5e-05

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Length = 124

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 31 EATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNV 75
           A  ++  H+K+     ++  P     S   ++E+D RSV+VGNV
Sbjct: 2  IAPCMQTTHSKMTAGAYTEGPPQP--LSAEEKKEIDKRSVYVGNV 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	84.21
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	83.21
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	82.81

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.21  E-value=0.15  Score=33.13  Aligned_cols=18  Identities=33%  Similarity=0.425  Sum_probs=13.6

Q ss_pred             CcccccccCCCceEeccc
Q 032827           58 SLANREEVDSRSVFVGNV   75 (132)
Q Consensus        58 t~eek~E~DsRSIYVGNV   75 (132)
                      ...+.++-|.|+|||||+
T Consensus         9 ~~~~~~~~~~~tifV~nL   26 (101)
T d2cq4a1           9 DNLSPEERDARTVFCMQL   26 (101)
T ss_dssp             CCCCTTHHHHTEEEEESC
T ss_pred             ccCCccccCCCEEEEECC
Confidence            334455668899999999

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.21  E-value=0.097  Score=32.81  Aligned_cols=14  Identities=29%  Similarity=0.691  Sum_probs=11.9

Q ss_pred             ccccCCCceEeccc
Q 032827           62 REEVDSRSVFVGNV   75 (132)
Q Consensus        62 k~E~DsRSIYVGNV   75 (132)
                      |.++.+|+|||||+
T Consensus         1 k~~~~~rtvfV~nl   14 (85)
T d1zh5a2           1 KNDVKNRSVYIKGF   14 (85)
T ss_dssp             HHHHHTTEEEEECC
T ss_pred             CCCCCcCEEEEECC
Confidence            35678999999999

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.81  E-value=0.35  Score=30.81  Aligned_cols=19  Identities=21%  Similarity=0.604  Sum_probs=15.1

Q ss_pred             CCcccccccCCCceEeccc
Q 032827           57 SSLANREEVDSRSVFVGNV   75 (132)
Q Consensus        57 ~t~eek~E~DsRSIYVGNV   75 (132)
                      +..+.+.+.|.+.|||||+
T Consensus         8 ~~~~~~~~~~~~~lfV~nL   26 (101)
T d1x5oa1           8 AQMAKQQEQDPTNLYISNL   26 (101)
T ss_dssp             CCCCSCCCCCTTEEEEESC
T ss_pred             cchhccccCCCCEEEEeCC
Confidence            4445667788999999999