Citrus Sinensis ID: 032837

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mhdfcftipyglilIGGGIVgfakkgstaslaggVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIatggnhipakae
Flexible Loop (DISEMBL)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE
Low Complexity Region (SEG)
MHDFCFTIPYgliligggivgFAKKgstaslaggvgtglllvlagylslKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE
Disordered region (IsUnstruct)
**DFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGN*******
Disordered Region (DISOPRED)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI************
Disordered Region (DISEMBL)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE
Disordered Region (DISPRO)
*HDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHI*****
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
O64847	108	UPF0136 membrane protein	no	no	0.719	0.879	0.327	6e-06
Q5R751	112	Transmembrane protein 14C	yes	no	0.681	0.803	0.312	0.0001
Q9CQN6	114	Transmembrane protein 14C	yes	no	0.681	0.789	0.312	0.0004
Q9P0S9	112	Transmembrane protein 14C	yes	no	0.681	0.803	0.303	0.0004
Q0P436	107	Transmembrane protein 14C	no	no	0.742	0.915	0.270	0.0007
Q924P2	115	Transmembrane protein 14C	no	no	0.681	0.782	0.303	0.0009

>sp|O64847|U136_ARATH UPF0136 membrane protein At2g26240 OS=Arabidopsis thaliana GN=At2g26240 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 21/116 (18%)

Query: 6   FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIE 65
           FT+ Y  +L  GG++G+ K+GS  SL  G G+  L                  Y+   + 
Sbjct: 9   FTLAYASLLGVGGLMGYLKRGSKISLVAGGGSAALF-----------------YY---VY 48

Query: 66  TEFRFRAEF-YAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
           TE         ++  V +A LT +M  RY+ T KV+PAG+V+ +S +MTG YL+ +
Sbjct: 49  TELPGNPVLASSIGIVGSAALTGMMGSRYLRTRKVVPAGLVSVVSLVMTGAYLHGL 104

Arabidopsis thaliana (taxid: 3702)

>sp|Q5R751|TM14C_PONAB Transmembrane protein 14C OS=Pongo abelii GN=TMEM14C PE=3 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 22/112 (19%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           +H F F   Y  ++  GGI+G+AK GS  SLA G+  G L  L  Y   +  +  +N + 
Sbjct: 10  LHWFGFG--YAALVASGGIIGYAKAGSVPSLAAGLLFGSLASLGAY---QLSQDPRNVW- 63

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALM 112
                           V    +  L  +M  R+  + K MPAG++AG S LM
Sbjct: 64  ----------------VFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLM 99

Required for normal heme biosynthesis.

Pongo abelii (taxid: 9601)

>sp|Q9CQN6|TM14C_MOUSE Transmembrane protein 14C OS=Mus musculus GN=Tmem14c PE=1 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 22/112 (19%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           +H F F   Y  ++  GGI+G+AK GS  SLA G      L   G   L A++  ++   
Sbjct: 11  LHYFGFG--YAALVATGGIIGYAKAGSVPSLAAG------LFFGGLAGLGAYQLSQDP-- 60

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALM 112
                  + F A         +  L  +M  R+  + K MPAG++AG S LM
Sbjct: 61  ----RNVWVFLA--------TSGTLAGIMGMRFYNSGKFMPAGLIAGASLLM 100

Required for normal heme biosynthesis.

Mus musculus (taxid: 10090)

>sp|Q9P0S9|TM14C_HUMAN Transmembrane protein 14C OS=Homo sapiens GN=TMEM14C PE=1 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 22/112 (19%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           +H F F   Y  ++  GGI+G+ K GS  SLA G+   L   LAG  + +  +  +N + 
Sbjct: 10  LHWFGFG--YAALVASGGIIGYVKAGSVPSLAAGL---LFGSLAGLGAYQLSQDPRNVW- 63

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALM 112
                           V    +  L  +M  R+  + K MPAG++AG S LM
Sbjct: 64  ----------------VFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLM 99

Required for normal heme biosynthesis.

Homo sapiens (taxid: 9606)

>sp|Q0P436|TM14C_DANRE Transmembrane protein 14C OS=Danio rerio GN=tmem14c PE=2 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 24/122 (19%)

Query: 10  YGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFR 69
           Y  ++  GG++G+ K GS  SLA G      LV  G     A++  ++            
Sbjct: 10  YAALVASGGVIGYVKAGSVPSLAAG------LVFGGLAGFGAYQTSQDP----------- 52

Query: 70  FRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPA 129
                + V    +  L  +M +R+  + K+ PAG++AG S LM    L K+  G    P 
Sbjct: 53  --GNIW-VSLAASGTLAAIMGKRFYNSRKITPAGLIAGASVLM----LAKLGAGMLQKPQ 105

Query: 130 KA 131
           K+
Sbjct: 106 KS 107

Required for normal heme biosynthesis.

Danio rerio (taxid: 7955)

>sp|Q924P2|TM14C_RAT Transmembrane protein 14C OS=Rattus norvegicus GN=Tmem14c PE=3 SV=1

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 22/112 (19%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           +H + F   Y  ++  GGI+G+AK GS  SLA G      L   G   L A++  ++   
Sbjct: 11  LHYYGFG--YAALVATGGIIGYAKAGSVPSLAAG------LFFGGLAGLGAYQLSQDP-- 60

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALM 112
                  + F A         +  L  +M  R+  + K MPAG++AG S LM
Sbjct: 61  ----RNVWVFLA--------TSGTLAGIMGMRFYNSGKFMPAGLIAGASLLM 100

Required for normal heme biosynthesis.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
225461013	119	PREDICTED: UPF0136 membrane protein At2g	0.901	1.0	0.742	1e-48
224126437	119	predicted protein [Populus trichocarpa]	0.901	1.0	0.704	1e-45
357494405	121	hypothetical protein MTR_5g092160 [Medic	0.901	0.983	0.681	2e-44
449468492	119	PREDICTED: UPF0136 membrane protein At2g	0.901	1.0	0.681	9e-44
351723771	119	uncharacterized protein LOC100306195 [Gl	0.901	1.0	0.674	3e-43
388503384	119	unknown [Lotus japonicus]	0.901	1.0	0.666	6e-42
15232290	119	Transmembrane proteins 14C [Arabidopsis	0.901	1.0	0.674	1e-41
297830734	119	hypothetical protein ARALYDRAFT_479576 [	0.901	1.0	0.666	2e-41
18403201	119	Transmembrane proteins 14C [Arabidopsis	0.901	1.0	0.659	1e-40
297847424	119	hypothetical protein ARALYDRAFT_892015 [	0.901	1.0	0.643	6e-40

>gi|225461013|ref|XP_002280849.1| PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera] gi|297737418|emb|CBI26619.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 98/132 (74%), Positives = 110/132 (83%), Gaps = 13/132 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+GGGIVG+AKKGS ASL GG+GTG +L+LAGYLSLKAF+KKKNSY 
Sbjct: 1   MHDFCFTIPYGLVLVGGGIVGYAKKGSLASLGGGLGTGFVLILAGYLSLKAFKKKKNSYL 60

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
           A+++E             TVCAA LT VM QRYM+TSK+MPAGIVAGISALMT FYLYKI
Sbjct: 61  ALILE-------------TVCAAALTWVMGQRYMQTSKIMPAGIVAGISALMTTFYLYKI 107

Query: 121 ATGGNHIPAKAE 132
           ATGGNHIP KAE
Sbjct: 108 ATGGNHIPTKAE 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126437|ref|XP_002319838.1| predicted protein [Populus trichocarpa] gi|118488838|gb|ABK96229.1| unknown [Populus trichocarpa x Populus deltoides] gi|222858214|gb|EEE95761.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 106/132 (80%), Gaps = 13/132 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+ GG++G+ KKGS ASL GG GTGL+L+ AGYLSLKAFEK+KNS+ 
Sbjct: 1   MHDFCFTIPYGLVLVIGGVIGYLKKGSMASLGGGAGTGLVLIFAGYLSLKAFEKRKNSFL 60

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
            + IE             TVCAA+LT VM QRYM+TSK+MPAGIVAGISALMT FYLYKI
Sbjct: 61  GLAIE-------------TVCAAILTFVMGQRYMQTSKIMPAGIVAGISALMTLFYLYKI 107

Query: 121 ATGGNHIPAKAE 132
           A GGNHIPAKAE
Sbjct: 108 AAGGNHIPAKAE 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494405|ref|XP_003617491.1| hypothetical protein MTR_5g092160 [Medicago truncatula] gi|217071360|gb|ACJ84040.1| unknown [Medicago truncatula] gi|355518826|gb|AET00450.1| hypothetical protein MTR_5g092160 [Medicago truncatula] gi|388495030|gb|AFK35581.1| unknown [Medicago truncatula]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/132 (68%), Positives = 106/132 (80%), Gaps = 13/132 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+GGG+ GF  KGSTASLAGGVGTGLLL+LAGYLSL AF K+KNSY 
Sbjct: 1   MHDFCFTIPYGLVLVGGGLFGFIHKGSTASLAGGVGTGLLLILAGYLSLNAFGKRKNSYL 60

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
           A+ IE              +CA VLT +M QRY++TSK+MPAG++AG+SALMT FYLYK+
Sbjct: 61  ALAIE-------------ILCAGVLTWIMGQRYLQTSKIMPAGMIAGLSALMTLFYLYKL 107

Query: 121 ATGGNHIPAKAE 132
           ATGGNHIPA A+
Sbjct: 108 ATGGNHIPATAK 119

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468492|ref|XP_004151955.1| PREDICTED: UPF0136 membrane protein At2g26240-like [Cucumis sativus] gi|449489972|ref|XP_004158473.1| PREDICTED: UPF0136 membrane protein At2g26240-like [Cucumis sativus]

 Score =  181 bits (459), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 90/132 (68%), Positives = 105/132 (79%), Gaps = 13/132 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGLIL+GGGI G+ +KGS  SLAGGVGTGL L+LAGYLSL AF+KKKNSY 
Sbjct: 1   MHDFCFTIPYGLILVGGGIFGYLRKGSIVSLAGGVGTGLALILAGYLSLGAFKKKKNSYL 60

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
           A+++E             TVC+  LT VM QRY++TSK+MPAG+VAGIS+LMT FYLYK+
Sbjct: 61  ALILE-------------TVCSGALTWVMGQRYLQTSKIMPAGVVAGISSLMTLFYLYKL 107

Query: 121 ATGGNHIPAKAE 132
           ATGGNHI  KAE
Sbjct: 108 ATGGNHISPKAE 119

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723771|ref|NP_001235243.1| uncharacterized protein LOC100306195 [Glycine max] gi|255627833|gb|ACU14261.1| unknown [Glycine max]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 89/132 (67%), Positives = 105/132 (79%), Gaps = 13/132 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+GGG+  +  KGS ASLAGGVG+GLLL++AGYLSL AF K+KNSY 
Sbjct: 1   MHDFCFTIPYGLMLVGGGLFAYISKGSIASLAGGVGSGLLLIVAGYLSLNAFGKRKNSYL 60

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
           A+ +E             TVCAA+LT VM QRY+ TSK+MPAG+VAGISALMT FYLYK+
Sbjct: 61  ALFLE-------------TVCAAILTWVMGQRYLGTSKIMPAGLVAGISALMTLFYLYKL 107

Query: 121 ATGGNHIPAKAE 132
           ATGGNH+P KAE
Sbjct: 108 ATGGNHLPTKAE 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503384|gb|AFK39758.1| unknown [Lotus japonicus]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 88/132 (66%), Positives = 102/132 (77%), Gaps = 13/132 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+GGG  G+  KGS  SL GGV +GLLL++AGY+SL AF K+KNSYF
Sbjct: 1   MHDFCFTIPYGLLLVGGGAFGYIHKGSIPSLLGGVVSGLLLIVAGYISLNAFGKRKNSYF 60

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
           A+ +E             TVCA  LT VM QRYMETSKVMPAG+VAGIS LMT FYLYK+
Sbjct: 61  ALFLE-------------TVCATALTWVMGQRYMETSKVMPAGVVAGISGLMTLFYLYKL 107

Query: 121 ATGGNHIPAKAE 132
           ATGGNH+PAKA+
Sbjct: 108 ATGGNHLPAKAD 119

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232290|ref|NP_188687.1| Transmembrane proteins 14C [Arabidopsis thaliana] gi|11994139|dbj|BAB01160.1| unnamed protein product [Arabidopsis thaliana] gi|34365633|gb|AAQ65128.1| At3g20510 [Arabidopsis thaliana] gi|51971331|dbj|BAD44330.1| unknown protein [Arabidopsis thaliana] gi|51971899|dbj|BAD44614.1| unknown protein [Arabidopsis thaliana] gi|332642868|gb|AEE76389.1| Transmembrane proteins 14C [Arabidopsis thaliana]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/132 (67%), Positives = 103/132 (78%), Gaps = 13/132 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYG++LIGGG +G+ KKGS  S AGG GTGLLL+LAGY+SLKAFEKKKNS  
Sbjct: 1   MHDFCFTIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTI 60

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
           A+V++             TV AA LT+VM QRY+ T K+MPAG+VAGISALMT FY+YKI
Sbjct: 61  AMVLQ-------------TVIAAALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKI 107

Query: 121 ATGGNHIPAKAE 132
           ATGGN  PAKAE
Sbjct: 108 ATGGNKFPAKAE 119

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830734|ref|XP_002883249.1| hypothetical protein ARALYDRAFT_479576 [Arabidopsis lyrata subsp. lyrata] gi|297329089|gb|EFH59508.1| hypothetical protein ARALYDRAFT_479576 [Arabidopsis lyrata subsp. lyrata]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/132 (66%), Positives = 103/132 (78%), Gaps = 13/132 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCF+IPYG++LIGGG +G+ KKGS  S AGG GTGLLL+LAGY+SLKAFEKKKNS  
Sbjct: 1   MHDFCFSIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSSI 60

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
           A+V++             TV AA LT+VM QRY+ T K+MPAG+VAGISALMT FY+YKI
Sbjct: 61  AMVLQ-------------TVIAAALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKI 107

Query: 121 ATGGNHIPAKAE 132
           ATGGN  PAKAE
Sbjct: 108 ATGGNKFPAKAE 119

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403201|ref|NP_564579.1| Transmembrane proteins 14C [Arabidopsis thaliana] gi|12321434|gb|AAG50780.1|AC079027_3 unknown protein [Arabidopsis thaliana] gi|18491153|gb|AAL69479.1| unknown protein [Arabidopsis thaliana] gi|20466055|gb|AAM20362.1| unknown protein [Arabidopsis thaliana] gi|21592962|gb|AAM64911.1| unknown [Arabidopsis thaliana] gi|332194465|gb|AEE32586.1| Transmembrane proteins 14C [Arabidopsis thaliana]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/132 (65%), Positives = 102/132 (77%), Gaps = 13/132 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYG++LI GG +G+ KKGS ASLAGG GTGLL+VLAG++SLKAFEKKK S  
Sbjct: 1   MHDFCFTIPYGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSLL 60

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
           A ++E             TV AA LT VM QR+++T K+MPA +VAGISALMT FY+YKI
Sbjct: 61  ATLLE-------------TVIAAALTFVMGQRFLQTQKIMPAALVAGISALMTCFYVYKI 107

Query: 121 ATGGNHIPAKAE 132
           ATGGNHIP KAE
Sbjct: 108 ATGGNHIPPKAE 119

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847424|ref|XP_002891593.1| hypothetical protein ARALYDRAFT_892015 [Arabidopsis lyrata subsp. lyrata] gi|297337435|gb|EFH67852.1| hypothetical protein ARALYDRAFT_892015 [Arabidopsis lyrata subsp. lyrata]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 103/132 (78%), Gaps = 13/132 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYG++LI GG +G+ KKGS ASLAGG GTGLL+VLAG++SLKAFEKKK S  
Sbjct: 1   MHDFCFTIPYGMLLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSSL 60

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
           A +++             TV AA LT VM QR+++T K++PAG+VAGISALMT FY++KI
Sbjct: 61  ATLLQ-------------TVIAAALTFVMGQRFLQTQKIIPAGLVAGISALMTCFYVFKI 107

Query: 121 ATGGNHIPAKAE 132
           ATGGNHIP KAE
Sbjct: 108 ATGGNHIPPKAE 119

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2085780	119	AT3G20510 [Arabidopsis thalian	0.901	1.0	0.484	3.3e-24
TAIR|locus:2033177	119	AT1G50740 "AT1G50740" [Arabido	0.901	1.0	0.469	1.4e-23
TAIR|locus:2057721	108	AT2G26240 [Arabidopsis thalian	0.325	0.398	0.465	9e-06
TAIR|locus:2082578	226	AT3G57280 "AT3G57280" [Arabido	0.886	0.517	0.276	1.8e-05
ZFIN|ZDB-GENE-070410-137	99	zgc:163080 "zgc:163080" [Danio	0.287	0.383	0.473	5e-05
TAIR|locus:2098189	240	AT3G43520 "AT3G43520" [Arabido	0.333	0.183	0.454	9.8e-05
UNIPROTKB|F1NWB5	117	TMEM14C "Uncharacterized prote	0.287	0.324	0.421	0.00013

TAIR|locus:2085780 AT3G20510 [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 64/132 (48%), Positives = 73/132 (55%)

Query:     1 MHDFCFTIPYXXXXXXXXXXXFAKKXXXXXXXXXXXXXXXXXXXXXXXXKAFEKKKNSYF 60
             MHDFCFTIPY           + KK                        KAFEKKKNS  
Sbjct:     1 MHDFCFTIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTI 60

Query:    61 AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
             A+V++T             V AA LT+VM QRY+ T K+MPAG+VAGISALMT FY+YKI
Sbjct:    61 AMVLQT-------------VIAAALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKI 107

Query:   121 ATGGNHIPAKAE 132
             ATGGN  PAKAE
Sbjct:   108 ATGGNKFPAKAE 119

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2033177 AT1G50740 "AT1G50740" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 62/132 (46%), Positives = 71/132 (53%)

Query:     1 MHDFCFTIPYXXXXXXXXXXXFAKKXXXXXXXXXXXXXXXXXXXXXXXXKAFEKKKNSYF 60
             MHDFCFTIPY           + KK                        KAFEKKK S  
Sbjct:     1 MHDFCFTIPYGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSLL 60

Query:    61 AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
             A ++ET             V AA LT VM QR+++T K+MPA +VAGISALMT FY+YKI
Sbjct:    61 ATLLET-------------VIAAALTFVMGQRFLQTQKIMPAALVAGISALMTCFYVYKI 107

Query:   121 ATGGNHIPAKAE 132
             ATGGNHIP KAE
Sbjct:   108 ATGGNHIPPKAE 119

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2057721 AT2G26240 [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 20/43 (46%), Positives = 31/43 (72%)

Query:    76 AVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLY 118
             ++  V +A LT +M  RY+ T KV+PAG+V+ +S +MTG YL+
Sbjct:    60 SIGIVGSAALTGMMGSRYLRTRKVVPAGLVSVVSLVMTGAYLH 102

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2082578 AT3G57280 "AT3G57280" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 36/130 (27%), Positives = 49/130 (37%)

Query:     1 MHDFCFTIPYXXXXXXXXXXXFAKKXXXXXXXXXXXXXXXXXXXXXXXXKAFEKKKNSYF 60
             +HDFCF IPY           FA                          K + + K+S+ 
Sbjct:   100 IHDFCFGIPYGGLVVSGGLLGFAFSRNLTSLSTGVLYGGGLLALSTLSLKIWREGKSSFP 159

Query:    61 AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
              I+ +              V +AV+       Y  T K+ PAG+ A ISA M  FY Y +
Sbjct:   160 YILGQA-------------VLSAVVFWKNFTAYSMTKKLFPAGVFAVISACMLCFYSYVV 206

Query:   121 ATGGNHIPAK 130
              +GGN  P K
Sbjct:   207 LSGGNPPPKK 216

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0009536 "plastid" evidence=IDA

ZFIN|ZDB-GENE-070410-137 zgc:163080 "zgc:163080" [Danio rerio (taxid:7955)]

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query:    75 YAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALM 112
             Y +  + A VL  VM  R+ ++ K+MPAGI+AG+S LM
Sbjct:    55 YGISLLSAGVLAAVMGMRFRKSGKLMPAGIMAGLSLLM 92

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098189 AT3G43520 "AT3G43520" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 9.8e-05, P = 9.8e-05
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query:    77 VDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
             V  V A  L  VM  RYM + K+ PAG+V+ +S +MTG Y++ I
Sbjct:   192 VGVVMAGALMYVMGTRYMRSKKIFPAGVVSIMSFIMTGGYIHGI 235

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|F1NWB5 TMEM14C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query:    77 VDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTG 114
             +  + +  LT VM  R+  + K MPAG++AG+S LM G
Sbjct:    67 ISLITSGTLTAVMGTRFYNSGKFMPAGLIAGVSLLMVG 104


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.137   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      132        97   0.00091  102 3  11 22  0.42    29
                                                     29  0.44    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  530 (56 KB)
  Total size of DFA:  100 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.47u 0.19s 8.66t   Elapsed:  00:00:00
  Total cpu time:  8.47u 0.19s 8.66t   Elapsed:  00:00:00
  Start:  Fri May 10 05:33:35 2013   End:  Fri May 10 05:33:35 2013

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027345001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (119 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
pfam03647	96	pfam03647, Tmemb_14, Transmembrane proteins 14C	9e-22
COG5548	105	COG5548, COG5548, Small integral membrane protein	1e-04

>gnl|CDD|202717 pfam03647, Tmemb_14, Transmembrane proteins 14C

 Score = 82.3 bits (204), Expect = 9e-22
 Identities = 40/115 (34%), Positives = 54/115 (46%), Gaps = 19/115 (16%)

Query: 4   FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIV 63
               I Y  ++  GGI+G+AK GS  SL  G+  G LL    YL  +   +      A++
Sbjct: 1   DHPGIAYAALVAIGGIMGYAKAGSVPSLIAGLIFGALLGYGAYLLSQN--QPYGLELALL 58

Query: 64  IETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLY 118
                             +AVL  VM  RY++T K MPAG+V G+SA M  FY Y
Sbjct: 59  A-----------------SAVLAGVMGPRYIKTRKFMPAGLVLGLSAAMLAFYYY 96

This family of short membrane proteins are as yet uncharacterized. Length = 96

>gnl|CDD|227835 COG5548, COG5548, Small integral membrane protein [Function unknown]

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 19/99 (19%)

Query: 8   IPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETE 67
           I   ++   GG++G+ +K S  SL  GV +GLLL +A YL L                  
Sbjct: 8   IALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQL------------------ 49

Query: 68  FRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVA 106
            + +     + TV +A L V  A R + + K +PAG+  
Sbjct: 50  -QGQTWGLILATVVSAALLVFFALRLVRSRKPVPAGLTT 87

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG4267	110	consensus Predicted membrane protein [Function unk	100.0
PF03647	96	Tmemb_14: Transmembrane proteins 14C; InterPro: IP	99.95
COG5548	105	Small integral membrane protein [Function unknown]	99.83

>KOG4267 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.7e-35  Score=215.17  Aligned_cols=108  Identities=52%  Similarity=0.792  Sum_probs=99.3

Q ss_pred             CccccchHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHHHhhhhhhhhhHHH
Q 032837            1 MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKK-NSYFAIVIETEFRFRAEFYAVDT   79 (132)
Q Consensus         1 ~hDfc~~~~yg~Ll~~GGi~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~   79 (132)
                      |||+|++++|++|+++||+|||.|+||+|||++|+.+|++   +||.+++.|+|++ ++...                 +
T Consensus         1 m~~~~f~~~y~~Lv~~GGliGY~kkgSi~SL~aGl~~G~l---~g~~s~~l~~~~~~~~~~~-----------------l   60 (110)
T KOG4267|consen    1 MHDDCFGIPYAALVTVGGLIGYLKKGSIPSLAAGLLFGAL---AGYGSYLLSRDKKGGSLVA-----------------L   60 (110)
T ss_pred             CCchhhhhhHHHHHHhcceeeeeecCCcchHHHHHHHHHH---HHHHHHHhhcCCCcCchhH-----------------H
Confidence            8999999999999999999999999999999999999974   5778888888876 54433                 4


Q ss_pred             H-HHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 032837           80 V-CAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIP  128 (132)
Q Consensus        80 ~-~S~~L~~~m~~R~~kt~K~mPaGlva~ls~~~~~~y~~~l~~g~n~~p  128 (132)
                      . +|++|+.+|+.||.+|||+||+|+++.+|++|++||.|+++++.||||
T Consensus        61 ~~~s~~L~gvmg~R~~~s~K~mPaglva~~s~~m~~~Y~y~~~~~~~~~~  110 (110)
T KOG4267|consen   61 GGTSAALLGVMGQRFYRSRKIMPAGLVAGISLLMTCFYLYVVLRGGNPPP  110 (110)
T ss_pred             HHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            4 799999999999999999999999999999999999999999999997

>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised

Probab=99.95  E-value=3.2e-29  Score=178.14  Aligned_cols=96  Identities=50%  Similarity=0.825  Sum_probs=85.1

Q ss_pred             ccchHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHhhhhhhhhhHHHHHHH
Q 032837            4 FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAA   83 (132)
Q Consensus         4 fc~~~~yg~Ll~~GGi~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~S~   83 (132)
                      ||++++|++++.+||++||+|+||+|||++|+++|++++.+++++.+      |+++++.++             +.+|+
T Consensus         1 f~~~~~y~~ll~~GG~~Gy~k~gS~~SLiaG~~~G~ll~~~~~~~~~------~~~~~~~~~-------------l~~s~   61 (96)
T PF03647_consen    1 FHLAIPYGALLAVGGIMGYVKKGSKPSLIAGVGFGALLLYAGYLSLT------NQKWGSELA-------------LAISA   61 (96)
T ss_dssp             HCHCHHHHHHHHHHHHHHCTSS--CHCHHHHHHHHHHHHHHHCCCS-------STHHCCHHH-------------HHHHH
T ss_pred             CchhHHHHHHHHHhhHHHhHhccchhHHHHHHHHHHHHHHHHHHhhc------cCCccHHHH-------------HHHHH
Confidence            79999999999999999999999999999999999999999998862      445666655             88999


Q ss_pred             HHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHH
Q 032837           84 VLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLY  118 (132)
Q Consensus        84 ~L~~~m~~R~~kt~K~mPaGlva~ls~~~~~~y~~  118 (132)
                      +|+.+|+.|+.||+|+||+|+++++|++|+++|.|
T Consensus        62 ~L~~~m~~R~~~t~k~~Pagl~~~~s~~~~~~y~Y   96 (96)
T PF03647_consen   62 VLAGVMGYRYIKTRKFMPAGLMALLSGAMLAFYYY   96 (96)
T ss_dssp             HHHHCCTSSS-SSSSSCCCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999976

; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.

>COG5548 Small integral membrane protein [Function unknown]

Probab=99.83  E-value=1.5e-20  Score=134.44  Aligned_cols=91  Identities=33%  Similarity=0.516  Sum_probs=80.4

Q ss_pred             chHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 032837            6 FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVL   85 (132)
Q Consensus         6 ~~~~yg~Ll~~GGi~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~S~~L   85 (132)
                      -.+.++.|..+||+|||.+|+|.+||++|+.+|+.+.+++|+.+|      ++.++++.+             ++.|++|
T Consensus         6 ~A~~ls~L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL~~~------g~~~Gl~~A-------------~~~s~~L   66 (105)
T COG5548           6 AAIALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQ------GQTWGLILA-------------TVVSAAL   66 (105)
T ss_pred             HHHHHHHHHHhhhHHHHHhcCCchhhHHHHHHhHHHHHHHHHHHc------CcccCeehH-------------HHHHHHH
Confidence            368899999999999999999999999999999999999999876      567888877             9999999


Q ss_pred             HHHHHHHHhhhCCCcchHHHHHHHHHHHHH
Q 032837           86 TVVMAQRYMETSKVMPAGIVAGISALMTGF  115 (132)
Q Consensus        86 ~~~m~~R~~kt~K~mPaGlva~ls~~~~~~  115 (132)
                      ....+.|+++|||+||+++.++......-+
T Consensus        67 l~~~~~R~~~sRKpvP~~Lt~lgg~~s~y~   96 (105)
T COG5548          67 LVFFALRLVRSRKPVPAGLTTLGGMLSLYV   96 (105)
T ss_pred             HHhcchhccccCCCcchHHHHHhhhhhhhh
Confidence            999999999999999997776655444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
2los_A	121	Transmembrane protein 14C; paramagnetic relaxation	5e-17
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	1e-15

>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens} Length = 121

 Score = 70.9 bits (173), Expect = 5e-17
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 20/120 (16%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           +    F   Y  ++  GGI+G+ K GS  SLA G+  G L  L  Y   +          
Sbjct: 17  VPLHWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQDPRN------ 70

Query: 61  AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
                           V    +  L  +M  R+  + K MPAG++AG S LM       +
Sbjct: 71  --------------VWVFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKVGVSM 116

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A Length = 108

 Score = 66.6 bits (162), Expect = 1e-15
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 20/115 (17%)

Query: 6   FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIE 65
               Y  ++  G I G+ ++G   SL  G+  G L     Y                   
Sbjct: 13  IGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYGAYRVSN--------------- 57

Query: 66  TEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 120
                      V    A  L  +M  R+  + K+MPAG+VAG+S +M    +  +
Sbjct: 58  -----DKRDVKVSLFTAFFLATIMGVRFKRSKKIMPAGLVAGLSLMMILRLVLLL 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	99.91
2los_A	121	Transmembrane protein 14C; paramagnetic relaxation	99.89

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A

Probab=99.91  E-value=2.2e-29  Score=182.09  Aligned_cols=97  Identities=28%  Similarity=0.499  Sum_probs=87.1

Q ss_pred             cchHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHhhhhhhhhhHHHHHHHH
Q 032837            5 CFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAV   84 (132)
Q Consensus         5 c~~~~yg~Ll~~GGi~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~S~~   84 (132)
                      .++++|++++.+||++||+|+||+|||++|+.+|+++   ++.+++.|+|++    +++++             +++|++
T Consensus        12 ~~~~~yg~Ll~~GGi~GY~k~gS~~SL~aG~~~G~ll---~~~~~~~~~~~~----~~~l~-------------l~~S~~   71 (108)
T 2loo_A           12 LIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLA---GYGAYRVSNDKR----DVKVS-------------LFTAFF   71 (108)
Confidence            4799999999999999999999999999999999976   444555676653    67766             999999


Q ss_pred             HHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHh
Q 032837           85 LTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIA  121 (132)
Q Consensus        85 L~~~m~~R~~kt~K~mPaGlva~ls~~~~~~y~~~l~  121 (132)
                      |+.+|+.||.||+|+||+|+++++|++|++||.|+++
T Consensus        72 L~~~m~~R~~~t~K~mPaGl~a~lS~~m~~~y~~~l~  108 (108)
T 2loo_A           72 LATIMGVRFKRSKKIMPAGLVAGLSLMMILRLVLLLL  108 (108)
Confidence            9999999999999999999999999999999999874

>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}

Probab=99.89  E-value=1.3e-28  Score=181.13  Aligned_cols=99  Identities=30%  Similarity=0.482  Sum_probs=87.7

Q ss_pred             cchHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHhhhhhhhhhHHHHHHHH
Q 032837            5 CFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAV   84 (132)
Q Consensus         5 c~~~~yg~Ll~~GGi~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~S~~   84 (132)
                      .++++||+|+.+||++||+|+||+|||++|+++|+++..++   ++.|+|+++    .+++             +++|++
T Consensus        21 ~~~~~yg~Ll~~GGiiGY~k~gS~~SLiaGl~~G~l~~~~a---~~~~~~~~~----~~l~-------------l~~S~~   80 (121)
T 2los_A           21 WFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGA---YQLSQDPRN----VWVF-------------LATSGT   80 (121)
Confidence            48999999999999999999999999999999999765544   456777643    3444             889999


Q ss_pred             HHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHhcC
Q 032837           85 LTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATG  123 (132)
Q Consensus        85 L~~~m~~R~~kt~K~mPaGlva~ls~~~~~~y~~~l~~g  123 (132)
                      |+++|+.||.||+|+||+|+++++|++|++||.|++++.
T Consensus        81 L~~~mg~R~~~t~K~mPaGlva~lS~~m~~~~~~~ll~~  119 (121)
T 2los_A           81 LAGIMGMRFYHSGKFMPAGLIAGASLLMVAKVGVSMFNR  119 (121)
Confidence            999999999999999999999999999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00