Citrus Sinensis ID: 032857

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MQAIECERTDGSAGGLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA
Secondary Structure (PSIPRED)
cccEEEEEcccccccEEEEEEEHHHcccccccccccccccccccEEEEccEEEEcccEEEEccccccccccccccccccEEEEEEccEEEEEEEcccccEEEEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccEEEHHHHHHHcccccccccccccccHccEEEcccEEEccccEEEEccccEEccccccccccccEEEEEEccEEEEEEccccccEEEEEEcccccccccEEEccccccccHHHHHcc
Coil and Loop (DISEMBL)
mqaiecertdgsaggLSLMFRRWAtkktagstkngrdskpknlgvkkfggervipgniivrqrgtrfhpgdyvgmgkdhtLYALKEGRVKFEKhklsgrkwvhvepkeghvlhplyanatanasspqletaa
Flexible Loop (DISEMBL)
mqaiecertdgsagglslMFRRWATkktagstkngrdskpknlgvkkfggervipgniivrqrgtrfhpgdyvgmgkDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYAnatanasspqletaa
Low Complexity Region (SEG)
MQAIECERTDGSAGGLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA
Disordered region (IsUnstruct)
*****************LMFRRW*********************VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYA***************
Disordered Region (DISOPRED)
*************GGLSLMFRRW******************NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLY****************
Disordered Region (DISEMBL)
***********SAGGLSLMFRRWAT************SKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATA***********
Disordered Region (DISPRO)
*QAIECERTDGSAGGLSLMFRRWATKK**************NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANA*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQAIECERTDGSAGGLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q83ED9	90	50S ribosomal protein L27	yes	no	0.651	0.955	0.639	3e-25
A9NBL4	90	50S ribosomal protein L27	yes	no	0.651	0.955	0.639	3e-25
B6J1S9	90	50S ribosomal protein L27	yes	no	0.651	0.955	0.639	3e-25
B6J9K3	90	50S ribosomal protein L27	yes	no	0.651	0.955	0.639	3e-25
A9KEJ8	90	50S ribosomal protein L27	yes	no	0.651	0.955	0.639	5e-25
Q2VZU3	89	50S ribosomal protein L27	yes	no	0.628	0.932	0.678	5e-25
A9IM57	89	50S ribosomal protein L27	yes	no	0.621	0.921	0.674	5e-25
C3LRG7	86	50S ribosomal protein L27	yes	no	0.651	1.0	0.627	1e-24
Q9KUS9	86	50S ribosomal protein L27	yes	no	0.651	1.0	0.627	1e-24
A5F8P1	86	50S ribosomal protein L27	yes	no	0.651	1.0	0.627	1e-24

>sp|Q83ED9|RL27_COXBU 50S ribosomal protein L27 OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=rpmA PE=3 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 66/86 (76%)

Query: 23  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
            A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLY
Sbjct: 1   MAHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLY 60

Query: 83  ALKEGRVKFEKHKLSGRKWVHVEPKE 108
           AL EG+VKF +     R +V +EP E
Sbjct: 61  ALIEGKVKFTRKGPKKRNFVSIEPLE 86

Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)

>sp|A9NBL4|RL27_COXBR 50S ribosomal protein L27 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rpmA PE=3 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 66/86 (76%)

Query: 23  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
            A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLY
Sbjct: 1   MAHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLY 60

Query: 83  ALKEGRVKFEKHKLSGRKWVHVEPKE 108
           AL EG+VKF +     R +V +EP E
Sbjct: 61  ALIEGKVKFTRKGPKKRNFVSIEPLE 86

Coxiella burnetii (strain RSA 331 / Henzerling II) (taxid: 360115)

>sp|B6J1S9|RL27_COXB2 50S ribosomal protein L27 OS=Coxiella burnetii (strain CbuG_Q212) GN=rpmA PE=3 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 66/86 (76%)

Query: 23  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
            A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLY
Sbjct: 1   MAHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLY 60

Query: 83  ALKEGRVKFEKHKLSGRKWVHVEPKE 108
           AL EG+VKF +     R +V +EP E
Sbjct: 61  ALIEGKVKFTRKGPKKRNFVSIEPLE 86

Coxiella burnetii (strain CbuG_Q212) (taxid: 434923)

>sp|B6J9K3|RL27_COXB1 50S ribosomal protein L27 OS=Coxiella burnetii (strain CbuK_Q154) GN=rpmA PE=3 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 66/86 (76%)

Query: 23  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
            A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLY
Sbjct: 1   MAHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLY 60

Query: 83  ALKEGRVKFEKHKLSGRKWVHVEPKE 108
           AL EG+VKF +     R +V +EP E
Sbjct: 61  ALIEGKVKFTRKGPKKRNFVSIEPLE 86

Coxiella burnetii (strain CbuK_Q154) (taxid: 434924)

>sp|A9KEJ8|RL27_COXBN 50S ribosomal protein L27 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rpmA PE=3 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 66/86 (76%)

Query: 23  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
            A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLY
Sbjct: 1   MAHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLY 60

Query: 83  ALKEGRVKFEKHKLSGRKWVHVEPKE 108
           AL EG+VKF +     R +V +EP E
Sbjct: 61  ALIEGKVKFIRKGPKKRNFVSIEPLE 86

Coxiella burnetii (strain Dugway 5J108-111) (taxid: 434922)

>sp|Q2VZU3|RL27_MAGSA 50S ribosomal protein L27 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpmA PE=3 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 23  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
            A KK  GS++NGRDS  + LGVKKFGGE VIPGNIIVRQRGT+F+PG  VGMGKDHTL+
Sbjct: 1   MAHKKAGGSSRNGRDSAGQRLGVKKFGGELVIPGNIIVRQRGTKFYPGTNVGMGKDHTLF 60

Query: 83  ALKEGRVKFEKHKLSGRKWVHVEP 106
           A   G+V F KHK  GR +V VEP
Sbjct: 61  ATAMGKVSF-KHKAEGRTFVVVEP 83

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

>sp|A9IM57|RL27_BART1 50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpmA PE=3 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/83 (67%), Positives = 66/83 (79%), Gaps = 1/83 (1%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VG+GKDHTL+A
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 84  LKEGRVKFEKHKLSGRKWVHVEP 106
           L EG+V F++ K   R +V V P
Sbjct: 62  LSEGKVSFQR-KAGNRSYVSVIP 83

Bartonella tribocorum (strain CIP 105476 / IBS 506) (taxid: 382640)

>sp|C3LRG7|RL27_VIBCM 50S ribosomal protein L27 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rpmA PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 66/86 (76%)

Query: 23  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+
Sbjct: 1   MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLF 60

Query: 83  ALKEGRVKFEKHKLSGRKWVHVEPKE 108
           AL +G+VKFE    + RK+V +E  E
Sbjct: 61  ALSDGKVKFEVKGPNNRKFVSIETAE 86

Vibrio cholerae serotype O1 (strain M66-2) (taxid: 579112)

>sp|Q9KUS9|RL27_VIBCH 50S ribosomal protein L27 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rpmA PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 66/86 (76%)

Query: 23  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+
Sbjct: 1   MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLF 60

Query: 83  ALKEGRVKFEKHKLSGRKWVHVEPKE 108
           AL +G+VKFE    + RK+V +E  E
Sbjct: 61  ALSDGKVKFEVKGPNNRKFVSIETAE 86

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

>sp|A5F8P1|RL27_VIBC3 50S ribosomal protein L27 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rpmA PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 66/86 (76%)

Query: 23  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+
Sbjct: 1   MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLF 60

Query: 83  ALKEGRVKFEKHKLSGRKWVHVEPKE 108
           AL +G+VKFE    + RK+V +E  E
Sbjct: 61  ALSDGKVKFEVKGPNNRKFVSIETAE 86

Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) (taxid: 345073)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
255538646	152	ribosomal protein L27, putative [Ricinus	0.916	0.796	0.853	4e-55
313586473	149	Mitochondrial 50S ribosomal protein L27	0.962	0.852	0.806	2e-54
449442805	148	PREDICTED: 50S ribosomal protein L27-lik	0.916	0.817	0.806	6e-52
359475326	146	PREDICTED: 50S ribosomal protein L27-lik	0.909	0.821	0.814	7e-52
297741460	136	unnamed protein product [Vitis vinifera]	0.909	0.882	0.814	1e-51
357456365	148	50S ribosomal protein L27 [Medicago trun	0.909	0.810	0.811	3e-51
358248158	147	uncharacterized protein LOC100782419 [Gl	0.916	0.823	0.798	3e-51
356541149	285	PREDICTED: uncharacterized protein LOC10	0.916	0.424	0.784	4e-50
388496050	181	unknown [Lotus japonicus]	0.840	0.613	0.828	2e-49
255648142	147	unknown [Glycine max]	0.916	0.823	0.776	3e-49

>gi|255538646|ref|XP_002510388.1| ribosomal protein L27, putative [Ricinus communis] gi|223551089|gb|EEF52575.1| ribosomal protein L27, putative [Ricinus communis]

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 105/123 (85%), Positives = 114/123 (92%), Gaps = 2/123 (1%)

Query: 10  DGSAGGLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHP 69
           DGSAGGLSLMFRRWATK+TAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHP
Sbjct: 32  DGSAGGLSLMFRRWATKRTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHP 91

Query: 70  GDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLE 129
           G+YVGMGKDHTLYALKEG VKFE HKLSGRKWVHVEPK+G+ LHP+YA   AN++S  L+
Sbjct: 92  GNYVGMGKDHTLYALKEGNVKFETHKLSGRKWVHVEPKDGYELHPVYAQ--ANSASTHLK 149

Query: 130 TAA 132
            A+
Sbjct: 150 IAS 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586473|gb|ADR71247.1| Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/129 (80%), Positives = 117/129 (90%), Gaps = 2/129 (1%)

Query: 4   IECERTDGSAGGLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQR 63
           +    TDGSAGGLSL+ RRWATKKTAGSTKNGRDSKPKNLGVKKFGGE+VIPGNIIVRQR
Sbjct: 23  VYASLTDGSAGGLSLILRRWATKKTAGSTKNGRDSKPKNLGVKKFGGEKVIPGNIIVRQR 82

Query: 64  GTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANA 123
           GTRFHPG+YVGMGKDHTLYALKEG VKFE +KLSGRKWVHVEPK+G+ LHP+Y  ATA+ 
Sbjct: 83  GTRFHPGNYVGMGKDHTLYALKEGNVKFETNKLSGRKWVHVEPKDGYELHPVY--ATASV 140

Query: 124 SSPQLETAA 132
           +S +L+TA+
Sbjct: 141 ASSRLKTAS 149

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442805|ref|XP_004139171.1| PREDICTED: 50S ribosomal protein L27-like [Cucumis sativus] gi|449482828|ref|XP_004156416.1| PREDICTED: 50S ribosomal protein L27-like [Cucumis sativus]

 Score =  208 bits (529), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 100/124 (80%), Positives = 111/124 (89%), Gaps = 3/124 (2%)

Query: 9   TDGSAGGLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFH 68
           +DG+  GL+L+FRRWATKKTAGSTKNGRDS PK LGVKKFGGERVIPGNIIVRQRGTRFH
Sbjct: 28  SDGATAGLNLLFRRWATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFH 87

Query: 69  PGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQL 128
           PGDYVG+GKDHTL+ALKEG VKFEK+KLSGRKWVHV PKEGHVLHP+Y      ++S QL
Sbjct: 88  PGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKWVHVIPKEGHVLHPVYE---TTSTSLQL 144

Query: 129 ETAA 132
           +TAA
Sbjct: 145 KTAA 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475326|ref|XP_003631656.1| PREDICTED: 50S ribosomal protein L27-like [Vitis vinifera]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 101/124 (81%), Positives = 111/124 (89%), Gaps = 4/124 (3%)

Query: 9   TDGSAGGLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFH 68
           +D S  GL L+F RWA+KKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFH
Sbjct: 27  SDVSGEGLGLIFMRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFH 86

Query: 69  PGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQL 128
           PG+YVG+GKDHTLYALKEG VKFEKHKLSGRKWVHVEPK+GHVLHP+YA+A A    P+L
Sbjct: 87  PGNYVGIGKDHTLYALKEGCVKFEKHKLSGRKWVHVEPKDGHVLHPVYADAAA----PRL 142

Query: 129 ETAA 132
           +T  
Sbjct: 143 KTTV 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741460|emb|CBI32591.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/124 (81%), Positives = 111/124 (89%), Gaps = 4/124 (3%)

Query: 9   TDGSAGGLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFH 68
           +D S  GL L+F RWA+KKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFH
Sbjct: 17  SDVSGEGLGLIFMRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFH 76

Query: 69  PGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQL 128
           PG+YVG+GKDHTLYALKEG VKFEKHKLSGRKWVHVEPK+GHVLHP+YA+A A    P+L
Sbjct: 77  PGNYVGIGKDHTLYALKEGCVKFEKHKLSGRKWVHVEPKDGHVLHPVYADAAA----PRL 132

Query: 129 ETAA 132
           +T  
Sbjct: 133 KTTV 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456365|ref|XP_003598463.1| 50S ribosomal protein L27 [Medicago truncatula] gi|217071060|gb|ACJ83890.1| unknown [Medicago truncatula] gi|355487511|gb|AES68714.1| 50S ribosomal protein L27 [Medicago truncatula] gi|388495594|gb|AFK35863.1| unknown [Medicago truncatula] gi|388500166|gb|AFK38149.1| unknown [Medicago truncatula]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/122 (81%), Positives = 112/122 (91%), Gaps = 2/122 (1%)

Query: 10  DGSAGGLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHP 69
           D S  GLSL+FRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHP
Sbjct: 28  DVSGEGLSLVFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHP 87

Query: 70  GDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLE 129
           G+YVG+GKDHTL+ALKEG VKFE++KL+GRKWVHVEPKEGHVLHP++A+ +  AS P++ 
Sbjct: 88  GNYVGLGKDHTLFALKEGWVKFERNKLTGRKWVHVEPKEGHVLHPVFADVS--ASEPKVG 145

Query: 130 TA 131
            A
Sbjct: 146 VA 147

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248158|ref|NP_001240083.1| uncharacterized protein LOC100782419 [Glycine max] gi|255638454|gb|ACU19536.1| unknown [Glycine max] gi|255638528|gb|ACU19572.1| unknown [Glycine max]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/124 (79%), Positives = 112/124 (90%), Gaps = 3/124 (2%)

Query: 9   TDGSAGGLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFH 68
           +D S  GLS  FRRWA+KKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFH
Sbjct: 27  SDVSGEGLSFTFRRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFH 86

Query: 69  PGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQL 128
           PG+YVG+GKDH+L+ALKEG VKFE++KL+GRKWVHVEPKEGHVLHPLYA   A+AS+ +L
Sbjct: 87  PGNYVGLGKDHSLFALKEGWVKFERNKLTGRKWVHVEPKEGHVLHPLYA---ADASASEL 143

Query: 129 ETAA 132
           + A 
Sbjct: 144 KVAV 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541149|ref|XP_003539043.1| PREDICTED: uncharacterized protein LOC100817864 [Glycine max]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/125 (78%), Positives = 113/125 (90%), Gaps = 4/125 (3%)

Query: 9   TDGSAG-GLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRF 67
           T G +G GL+L FRRWA+KKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRF
Sbjct: 164 TSGVSGEGLNLAFRRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRF 223

Query: 68  HPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQ 127
           HPG+YVG+GKDH+L+ALKEG VKFE++KL+GRKWVH+EPKEGHVLHPLYA   A+ S+ +
Sbjct: 224 HPGNYVGLGKDHSLFALKEGWVKFERNKLTGRKWVHIEPKEGHVLHPLYA---ADGSASE 280

Query: 128 LETAA 132
           L+ A 
Sbjct: 281 LKVAV 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496050|gb|AFK36091.1| unknown [Lotus japonicus]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/111 (82%), Positives = 105/111 (94%)

Query: 10  DGSAGGLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHP 69
           D S  GLS++F RWA+KKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHP
Sbjct: 63  DVSGEGLSMVFSRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHP 122

Query: 70  GDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANAT 120
           G+YVG+GKDHTL+ALK+G VKFE++KL+GRKWVHVEPKEGHVLHP+Y +A+
Sbjct: 123 GNYVGIGKDHTLFALKQGLVKFERNKLTGRKWVHVEPKEGHVLHPVYESAS 173

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648142|gb|ACU24525.1| unknown [Glycine max]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 97/125 (77%), Positives = 112/125 (89%), Gaps = 4/125 (3%)

Query: 9   TDGSAG-GLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRF 67
           T G +G GL+L FRRWA+KKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRF
Sbjct: 26  TSGVSGEGLNLAFRRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRF 85

Query: 68  HPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQ 127
           HPG+YVG+GKD +L+ALKEG VKFE++KL+GRKWVH+EPKEGHVLHPLYA   A+ S+ +
Sbjct: 86  HPGNYVGLGKDRSLFALKEGWVKFERNKLTGRKWVHIEPKEGHVLHPLYA---ADGSASE 142

Query: 128 LETAA 132
           L+ A 
Sbjct: 143 LKVAV 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2150881	154	AT5G15220 [Arabidopsis thalian	0.931	0.798	0.774	2.8e-50
TAIR|locus:2039390	154	AT2G16930 [Arabidopsis thalian	0.931	0.798	0.766	2.5e-49
TIGR_CMR|CBU_0386	90	CBU_0386 "ribosomal protein L2	0.643	0.944	0.647	1.8e-25
UNIPROTKB|Q9KUS9	86	rpmA "50S ribosomal protein L2	0.643	0.988	0.635	1.2e-24
TIGR_CMR|VC_0436	86	VC_0436 "ribosomal protein L27	0.643	0.988	0.635	1.2e-24
TIGR_CMR|NSE_0897	82	NSE_0897 "ribosomal protein L2	0.606	0.975	0.679	2e-24
TIGR_CMR|CPS_4511	85	CPS_4511 "ribosomal protein L2	0.613	0.952	0.641	8.7e-24
TIGR_CMR|SO_3651	84	SO_3651 "ribosomal protein L27	0.621	0.976	0.621	1.4e-23
DICTYBASE|DDB_G0278889	142	mrpl27 "ribosomal protein L27,	0.712	0.661	0.555	2.3e-23
UNIPROTKB|P0A7L8	85	rpmA "50S ribosomal subunit pr	0.621	0.964	0.597	3.4e-22

TAIR|locus:2150881 AT5G15220 [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 96/124 (77%), Positives = 111/124 (89%)

Query:     9 TDGSAGGLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFH 68
             +DGS+ GLSL+F+RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFH
Sbjct:    32 SDGSSSGLSLVFKRWATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFH 91

Query:    69 PGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQL 128
             PGDYVG+GKDHTL+ALKEGRV+FEK K++GRKW+HV+P  GHVLHP+Y  A A A S +L
Sbjct:    92 PGDYVGIGKDHTLFALKEGRVRFEKSKITGRKWIHVDPTGGHVLHPIYTKAAA-AQSTKL 150

Query:   129 ETAA 132
             +TA+
Sbjct:   151 KTAS 154

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2039390 AT2G16930 [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 95/124 (76%), Positives = 109/124 (87%)

Query:     9 TDGSAGGLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFH 68
             +DGS+ GLSL+ +RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFH
Sbjct:    32 SDGSSSGLSLVLKRWATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFH 91

Query:    69 PGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQL 128
             PGDYVG+GKDHTL+ALKEGRV+FEK K++GRKW+HV+P  GHVLHP+Y  A A A S +L
Sbjct:    92 PGDYVGIGKDHTLFALKEGRVRFEKSKITGRKWIHVDPIGGHVLHPIYTKAAA-AKSTKL 150

Query:   129 ETAA 132
              TA+
Sbjct:   151 NTAS 154

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

TIGR_CMR|CBU_0386 CBU_0386 "ribosomal protein L27" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 55/85 (64%), Positives = 66/85 (77%)

Query:    24 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
             A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLYA
Sbjct:     2 AHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLYA 61

Query:    84 LKEGRVKFEKHKLSGRKWVHVEPKE 108
             L EG+VKF +     R +V +EP E
Sbjct:    62 LIEGKVKFTRKGPKKRNFVSIEPLE 86

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|Q9KUS9 rpmA "50S ribosomal protein L27" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 54/85 (63%), Positives = 66/85 (77%)

Query:    24 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
             A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+A
Sbjct:     2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFA 61

Query:    84 LKEGRVKFEKHKLSGRKWVHVEPKE 108
             L +G+VKFE    + RK+V +E  E
Sbjct:    62 LSDGKVKFEVKGPNNRKFVSIETAE 86

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_0436 VC_0436 "ribosomal protein L27" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 54/85 (63%), Positives = 66/85 (77%)

Query:    24 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
             A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+A
Sbjct:     2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFA 61

Query:    84 LKEGRVKFEKHKLSGRKWVHVEPKE 108
             L +G+VKFE    + RK+V +E  E
Sbjct:    62 LSDGKVKFEVKGPNNRKFVSIETAE 86

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|NSE_0897 NSE_0897 "ribosomal protein L27" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 55/81 (67%), Positives = 63/81 (77%)

Query:    24 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
             ATKK  GS+ NGRDS  K LGVKKFG ERVIPG+IIVRQRGT+FHPG  VGMG DHT++A
Sbjct:     2 ATKKAGGSSSNGRDSIGKRLGVKKFGSERVIPGDIIVRQRGTKFHPGRNVGMGSDHTIFA 61

Query:    84 LKEGRVKFEKHKLSGRKWVHV 104
             +K G V F    L GR++VHV
Sbjct:    62 MKSGSVSFSVG-LRGRRFVHV 81

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|CPS_4511 CPS_4511 "ribosomal protein L27" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 52/81 (64%), Positives = 64/81 (79%)

Query:    24 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
             A KK AGST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH G  +G+GKDHTL+A
Sbjct:     2 AHKKAAGSTRNGRDSEAKRLGVKRFGGESVLAGNIIVRQRGTRFHAGSNMGIGKDHTLFA 61

Query:    84 LKEGRVKFEKHKLSGRKWVHV 104
             L +G+V+FE      RK+V +
Sbjct:    62 LSDGKVQFEVKGPKSRKFVSI 82

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|SO_3651 SO_3651 "ribosomal protein L27" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 51/82 (62%), Positives = 65/82 (79%)

Query:    24 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
             A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+A
Sbjct:     2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFA 61

Query:    84 LKEGRVKFEKHKLSGRKWVHVE 105
             L +G+VKFE    + RK++ +E
Sbjct:    62 LTDGKVKFEVKGPNNRKFISIE 83

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

DICTYBASE|DDB_G0278889 mrpl27 "ribosomal protein L27, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 55/99 (55%), Positives = 69/99 (69%)

Query:    21 RRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHT 80
             +R+ATKK+AGSTKNGR S+PKNLG+KK G + V PG II+RQRGT FHPG +VGMGKDHT
Sbjct:    23 KRFATKKSAGSTKNGRTSQPKNLGLKKSGNQLVYPGEIIIRQRGTEFHPGTFVGMGKDHT 82

Query:    81 LYALKEGRVKFEKH-KLSGRKWVHVEPKEGHVLHPLYAN 118
             +++   G V F K  K  G K    + +    + PLY N
Sbjct:    83 IFSKTIGLVSFSKEPKFPGSK----KTRRFISVAPLYTN 117

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|P0A7L8 rpmA "50S ribosomal subunit protein L27" [Escherichia coli K-12 (taxid:83333)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 49/82 (59%), Positives = 62/82 (75%)

Query:    24 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
             A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A
Sbjct:     2 AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFA 61

Query:    84 LKEGRVKFEKHKLSGRKWVHVE 105
               +G+VKFE      RK++ +E
Sbjct:    62 KADGKVKFEVKGPKNRKFISIE 83

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8DEC5	RL27_VIBVU	No assigned EC number	0.6235	0.6439	1.0	yes	no
Q6LV48	RL27_PHOPR	No assigned EC number	0.6309	0.6363	0.9882	yes	no
B0UVI0	RL27_HAES2	No assigned EC number	0.6463	0.6212	0.9647	yes	no
Q87SU3	RL27_VIBPA	No assigned EC number	0.6352	0.6439	1.0	yes	no
A8G8Z2	RL27_SERP5	No assigned EC number	0.6235	0.6439	1.0	yes	no
Q4QM29	RL27_HAEI8	No assigned EC number	0.6219	0.6212	0.9647	yes	no
A9NBL4	RL27_COXBR	No assigned EC number	0.6395	0.6515	0.9555	yes	no
A3D179	RL27_SHEB5	No assigned EC number	0.6071	0.6363	1.0	yes	no
A6WK50	RL27_SHEB8	No assigned EC number	0.6071	0.6363	1.0	yes	no
Q6G507	RL27_BARHE	No assigned EC number	0.6626	0.6212	0.9213	yes	no
B2HXU8	RL27_ACIBC	No assigned EC number	0.6506	0.6287	0.9764	yes	no
B6EL42	RL27_ALISL	No assigned EC number	0.6235	0.6439	1.0	yes	no
Q7VP91	RL27_HAEDU	No assigned EC number	0.6341	0.6212	0.9647	yes	no
C3LRG7	RL27_VIBCM	No assigned EC number	0.6279	0.6515	1.0	yes	no
A9KEJ8	RL27_COXBN	No assigned EC number	0.6395	0.6515	0.9555	yes	no
A3M899	RL27_ACIBT	No assigned EC number	0.6506	0.6287	0.9764	yes	no
B5FGF8	RL27_VIBFM	No assigned EC number	0.6352	0.6439	1.0	yes	no
Q83ED9	RL27_COXBU	No assigned EC number	0.6395	0.6515	0.9555	yes	no
B8EC05	RL27_SHEB2	No assigned EC number	0.6071	0.6363	1.0	yes	no
A5UDJ5	RL27_HAEIE	No assigned EC number	0.6219	0.6212	0.9647	yes	no
B7GXH9	RL27_ACIB3	No assigned EC number	0.6506	0.6287	0.9764	yes	no
A3N3T8	RL27_ACTP2	No assigned EC number	0.6341	0.6212	0.9647	yes	no
Q5E872	RL27_VIBF1	No assigned EC number	0.6352	0.6439	1.0	yes	no
Q7MP93	RL27_VIBVY	No assigned EC number	0.6235	0.6439	1.0	yes	no
B0BU26	RL27_ACTPJ	No assigned EC number	0.6341	0.6212	0.9647	yes	no
Q9KUS9	RL27_VIBCH	No assigned EC number	0.6279	0.6515	1.0	yes	no
Q9CNS7	RL27_PASMU	No assigned EC number	0.6219	0.6212	0.9647	yes	no
Q65S55	RL27_MANSM	No assigned EC number	0.6219	0.6212	0.9647	yes	no
Q2G9U8	RL27_NOVAD	No assigned EC number	0.6506	0.6212	0.9213	yes	no
B7I6V8	RL27_ACIB5	No assigned EC number	0.6506	0.6287	0.9764	yes	no
Q3SKG3	RL27_THIDA	No assigned EC number	0.6190	0.6363	0.9655	yes	no
A7N0G1	RL27_VIBHB	No assigned EC number	0.6352	0.6439	1.0	yes	no
B8F874	RL27_HAEPS	No assigned EC number	0.6341	0.6212	0.9647	yes	no
A5UI24	RL27_HAEIG	No assigned EC number	0.6219	0.6212	0.9647	yes	no
Q0AKX6	RL27_MARMM	No assigned EC number	0.6547	0.6287	0.9325	yes	no
Q11CP4	RL27_MESSB	No assigned EC number	0.6506	0.6212	0.9213	yes	no
Q2VZU3	RL27_MAGSA	No assigned EC number	0.6785	0.6287	0.9325	yes	no
Q2GCN3	RL27_NEOSM	No assigned EC number	0.6707	0.6136	0.9878	yes	no
B0VSH6	RL27_ACIBS	No assigned EC number	0.6506	0.6287	0.9764	yes	no
Q47VL3	RL27_COLP3	No assigned EC number	0.6341	0.6212	0.9647	yes	no
A9IM57	RL27_BART1	No assigned EC number	0.6746	0.6212	0.9213	yes	no
B3GZE6	RL27_ACTP7	No assigned EC number	0.6341	0.6212	0.9647	yes	no
B4RZH4	RL27_ALTMD	No assigned EC number	0.6463	0.6212	0.9647	yes	no
A9L429	RL27_SHEB9	No assigned EC number	0.6071	0.6363	1.0	yes	no
B0VEJ5	RL27_ACIBY	No assigned EC number	0.6506	0.6287	0.9764	yes	no
A5F8P1	RL27_VIBC3	No assigned EC number	0.6279	0.6515	1.0	yes	no
B6J1S9	RL27_COXB2	No assigned EC number	0.6395	0.6515	0.9555	yes	no
Q0I1P7	RL27_HAES1	No assigned EC number	0.6463	0.6212	0.9647	yes	no
A6VMT9	RL27_ACTSZ	No assigned EC number	0.6219	0.6212	0.9647	yes	no
B6J9K3	RL27_COXB1	No assigned EC number	0.6395	0.6515	0.9555	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036384001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (108 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026834001	RecName- Full=50S ribosomal protein L21;; This protein binds to 23S rRNA (By similarity) (209 aa)	•			•	•		•		0.983
	GSVIVG00035271001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (140 aa)	•			•	•		•		0.980
	GSVIVG00026031001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (117 aa)	•			•	•		•		0.973
	GSVIVG00026943001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (265 aa)	•			•	•		•		0.967
	rpl20	RecName- Full=50S ribosomal protein L20, chloroplastic;; Binds directly to 23S ribosomal RNA an [...] (117 aa)	•			•	•		•		0.964
	GSVIVG00015971001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (112 aa)	•			•	•		•		0.964
	GSVIVG00023012001	SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (213 aa)	•			•	•		•		0.957
	GSVIVG00019799001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (363 aa)	•						•		0.953
	GSVIVG00027910001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (235 aa)	•			•	•		•		0.950
	GSVIVG00022142001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (195 aa)	•			•	•		•		0.950

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
PRK05435	82	PRK05435, rpmA, 50S ribosomal protein L27; Validat	2e-47
pfam01016	80	pfam01016, Ribosomal_L27, Ribosomal L27 protein	4e-46
COG0211	87	COG0211, RpmA, Ribosomal protein L27 [Translation,	1e-42
CHL00121	86	CHL00121, rpl27, ribosomal protein L27; Reviewed	3e-38
TIGR00062	83	TIGR00062, L27, ribosomal protein L27	3e-33

>gnl|CDD|235464 PRK05435, rpmA, 50S ribosomal protein L27; Validated

 Score =  147 bits (373), Expect = 2e-47
 Identities = 54/82 (65%), Positives = 63/82 (76%), Gaps = 1/82 (1%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GST+NGRDS+ K LGVK+FGG+ V  GNIIVRQRGT+FHPG  VG GKDHTL+A
Sbjct: 2   AHKKGGGSTRNGRDSESKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFA 61

Query: 84  LKEGRVKFEKHKLSGRKWVHVE 105
           L +G VKFE+ K   RK+V V 
Sbjct: 62  LVDGVVKFER-KGRNRKYVSVV 82

Length = 82

>gnl|CDD|201553 pfam01016, Ribosomal_L27, Ribosomal L27 protein

 Score =  143 bits (363), Expect = 4e-46
 Identities = 58/81 (71%), Positives = 64/81 (79%), Gaps = 1/81 (1%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GSTKNGRDS  K LGVKKFGG+ V  GNIIVRQRGT+FHPG+ VGMGKDHTL+A
Sbjct: 1   AHKKGGGSTKNGRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFA 60

Query: 84  LKEGRVKFEKHKLSGRKWVHV 104
           L +G VKFEK K   RK+V V
Sbjct: 61  LVDGYVKFEK-KPKNRKYVSV 80

Length = 80

>gnl|CDD|223289 COG0211, RpmA, Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]

 Score =  135 bits (341), Expect = 1e-42
 Identities = 55/85 (64%), Positives = 64/85 (75%), Gaps = 1/85 (1%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GST+NGRDS+ K LGVKKFGG+ V  G+IIVRQRGT+FHPG  VG GKDHTL+A
Sbjct: 2   AHKKGGGSTRNGRDSESKRLGVKKFGGQFVKAGSIIVRQRGTKFHPGVNVGRGKDHTLFA 61

Query: 84  LKEGRVKFEKHKLSGRKWVHVEPKE 108
           L +G VKFE  K   RK+V V P+ 
Sbjct: 62  LVDGVVKFET-KGKNRKYVSVVPEA 85

Length = 87

>gnl|CDD|214370 CHL00121, rpl27, ribosomal protein L27; Reviewed

 Score =  123 bits (312), Expect = 3e-38
 Identities = 49/77 (63%), Positives = 57/77 (74%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK AGSTKNGRDS  K LGVK+FGGE+V  GNI++RQRGT+F PG  VG GKD TLYA
Sbjct: 2   AHKKGAGSTKNGRDSNAKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLYA 61

Query: 84  LKEGRVKFEKHKLSGRK 100
           L +G VKF+K     + 
Sbjct: 62  LIDGFVKFKKKNKKQKS 78

Length = 86

>gnl|CDD|232803 TIGR00062, L27, ribosomal protein L27

 Score =  111 bits (279), Expect = 3e-33
 Identities = 55/82 (67%), Positives = 64/82 (78%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           ATKK  GSTKNGRDS+ K LGVK+ GG+ V  G+IIVRQRGT+FHPG+ VGMGKDHTL+A
Sbjct: 2   ATKKGVGSTKNGRDSEAKRLGVKRAGGQFVRAGSIIVRQRGTKFHPGNNVGMGKDHTLFA 61

Query: 84  LKEGRVKFEKHKLSGRKWVHVE 105
           L +G VKFEK     RK+V V 
Sbjct: 62  LSDGVVKFEKKGKRSRKFVSVV 83

Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG4600	144	consensus Mitochondrial ribosomal protein MRP7 (L2	100.0
COG0211	87	RpmA Ribosomal protein L27 [Translation, ribosomal	100.0
CHL00121	86	rpl27 ribosomal protein L27; Reviewed	100.0
PF01016	81	Ribosomal_L27: Ribosomal L27 protein; InterPro: IP	100.0
TIGR00062	83	L27 ribosomal protein L27. Eubacterial, chloroplas	100.0
PRK05435	82	rpmA 50S ribosomal protein L27; Validated	100.0
PF14382	39	ECR1_N: Exosome complex exonuclease RRP4 N-termina	95.74
PRK09521	189	exosome complex RNA-binding protein Csl4; Provisio	95.6
COG1096	188	Predicted RNA-binding protein (consists of S1 doma	94.57
PRK04163	235	exosome complex RNA-binding protein Rrp4; Provisio	93.41
PF01551	96	Peptidase_M23: Peptidase family M23; InterPro: IPR	89.3
PF03961	451	DUF342: Protein of unknown function (DUF342); Inte	87.86

>KOG4600 consensus Mitochondrial ribosomal protein MRP7 (L2) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.6e-47  Score=293.68  Aligned_cols=112  Identities=66%  Similarity=1.114  Sum_probs=104.3

Q ss_pred             cCCCCCcceeeeeeeeccCCccCCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEE
Q 032857           10 DGSAGGLSLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRV   89 (132)
Q Consensus        10 ~~~~~~~~~~~~r~A~KK~~GStkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V   89 (132)
                      ...+++++.+++|||+||++|||+|+|||+|+|||||+|+||+|.||+||||||||+||||+|||||||||||||++|+|
T Consensus        15 ~~~ss~~~~l~vR~AtKk~aGStKN~~dS~grrlGvKk~egq~V~~G~IIvrQRgtkfHPG~nVGiGKDhtifaL~eG~V   94 (144)
T KOG4600|consen   15 DGSSSGLSFLAVRWATKKGAGSTKNGRDSAGRRLGVKKYEGQSVIPGNIIVRQRGTKFHPGDNVGIGKDHTIFALEEGRV   94 (144)
T ss_pred             cCCCCcceeeeeeeecccccCccccCCCCCcccccceecCCeeeecccEEEEecccccCCCcccccCCcceEEEeeccEE
Confidence            45566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCC-ceEEEeeeCCCCccccccccccc
Q 032857           90 KFEKHKLSG-RKWVHVEPKEGHVLHPLYANATA  121 (132)
Q Consensus        90 ~f~~~~~~~-r~~V~V~p~~~~~~hp~~~~~~~  121 (132)
                      +|+++++.. |+||+|+|-....+||.+.++..
T Consensus        95 rf~k~~~~~~Rk~i~V~~~~~~~l~~~~~k~~v  127 (144)
T KOG4600|consen   95 RFEKSKITPPRKWIGVDPRGGLPLPPPYYKATV  127 (144)
T ss_pred             EEEEccCCCCcceEEEeecCCccCCCccchhhh
Confidence            999987654 99999999999999998876654

>COG0211 RpmA Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.4e-47  Score=272.67  Aligned_cols=86  Identities=63%  Similarity=0.964  Sum_probs=83.4

Q ss_pred             eeeccCCccCCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEE
Q 032857           23 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV  102 (132)
Q Consensus        23 ~A~KK~~GStkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V  102 (132)
                      |||||++|||+|||||++||||+|+|+||+|.+|+||||||||+||||+|||||+|||||||++|+|+|+... ++|+||
T Consensus         1 mA~KKg~GSt~NgRDS~~krLGvK~~~Gq~v~aG~IivRQRGTk~hpG~NVG~GkDhTlFAl~dG~Vkf~~k~-~~rk~v   79 (87)
T COG0211           1 MAHKKGGGSTRNGRDSESKRLGVKKFGGQFVKAGSIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVVKFETKG-KNRKYV   79 (87)
T ss_pred             CcccccccccccCccccccccceeeeCCeEEecccEEEEeccccccCCcccccCCCceEEEeeccEEEEEEcc-CCccEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999986 799999


Q ss_pred             EeeeCCC
Q 032857          103 HVEPKEG  109 (132)
Q Consensus       103 ~V~p~~~  109 (132)
                      +|+|...
T Consensus        80 sV~~~~~   86 (87)
T COG0211          80 SVVPEAE   86 (87)
T ss_pred             EEEeecc
Confidence            9999764

>CHL00121 rpl27 ribosomal protein L27; Reviewed

Probab=100.00  E-value=9.7e-46  Score=264.50  Aligned_cols=84  Identities=61%  Similarity=0.907  Sum_probs=81.1

Q ss_pred             eeeccCCccCCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEE
Q 032857           23 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV  102 (132)
Q Consensus        23 ~A~KK~~GStkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V  102 (132)
                      |||||++|||+|||||+|||||+|+++||+|.||+||||||||+||||+||+|||||||||+++|+|+|++.. +++++|
T Consensus         1 mA~KK~~GStkNgrdS~~KrLGvK~~~gq~V~~G~IivRQRGtk~hPG~NVg~GrD~TlfAl~~G~V~f~~~~-~~~~~v   79 (86)
T CHL00121          1 MAHKKGAGSTKNGRDSNAKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLYALIDGFVKFKKKN-KKQKSI   79 (86)
T ss_pred             CCcccccCcCCCCCCCCcccceeEEcCCEEEcCCcEEEEcCCCeECCCCcccccCCceEEEccceEEEEEEeC-CCCEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999874 688999


Q ss_pred             EeeeC
Q 032857          103 HVEPK  107 (132)
Q Consensus       103 ~V~p~  107 (132)
                      +|+|.
T Consensus        80 sv~~~   84 (86)
T CHL00121         80 NVINI   84 (86)
T ss_pred             EEeec
Confidence            99986

>PF01016 Ribosomal_L27: Ribosomal L27 protein; InterPro: IPR001684 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=6.6e-46  Score=262.78  Aligned_cols=81  Identities=72%  Similarity=1.122  Sum_probs=73.6

Q ss_pred             eeccCCccCCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEE
Q 032857           24 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVH  103 (132)
Q Consensus        24 A~KK~~GStkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~  103 (132)
                      ||||++|||+|||||+|||||||+++||+|.||+||||||||+||||+||+|||||||||+++|+|+|+++. ++|+||+
T Consensus         1 A~KK~~GSt~NgrdS~~krlGvK~~~G~~V~~G~IivRQRgtk~hPG~NVg~GrD~TLfAl~~G~V~f~~~~-~~rk~v~   79 (81)
T PF01016_consen    1 AHKKGGGSTKNGRDSNPKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGRDHTLFALVDGRVKFTKEK-RNRKYVS   79 (81)
T ss_dssp             --SSSSSSSS--S-STTTTSEESSSTTCEESSTSEEEEBSSSSSEEBTTEEEETTSEEEESSSCEEEEEEET-TTEEEEE
T ss_pred             CCccccccccCCCCCCCcccEEEEeCCEEEcCCCEEEEeCCCcCcCCCCEEECCCCcEEEecCEEEEEEEeC-CCCEEEE
Confidence            899999999999999999999999999999999999999999999999999999999999999999999994 7899999


Q ss_pred             ee
Q 032857          104 VE  105 (132)
Q Consensus       104 V~  105 (132)
                      |+
T Consensus        80 V~   81 (81)
T PF01016_consen   80 VV   81 (81)
T ss_dssp             E-
T ss_pred             eC
Confidence            85

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L27 is a protein from the large (50S) subunit; it is essential for ribosome function, but its exact role is unclear. It belongs to a family of ribosomal proteins, examples of which are found in bacteria, chloroplasts of plants and red algae and the mitochondria of fungi (e.g. MRP7 from yeast mitochondria). The schematic relationship between these groups of proteins is shown below. Bacterial L27 Nxxxxxxxxx Algal L27 Nxxxxxxxxx Plant L27 tttttNxxxxxxxxxxxxx Yeast MRP7 tttNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 't': transit peptide. 'N': N-terminal of mature protein. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZJQ_T 2ZJP_T 3PIP_T 3DLL_T 3PIO_T 1Y69_U 3CF5_T 2ZJR_T 1VSA_U 3PYT_W ....

>TIGR00062 L27 ribosomal protein L27

Probab=100.00  E-value=1.4e-45  Score=262.32  Aligned_cols=83  Identities=66%  Similarity=0.990  Sum_probs=80.3

Q ss_pred             eeeccCCccCCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEE
Q 032857           23 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV  102 (132)
Q Consensus        23 ~A~KK~~GStkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V  102 (132)
                      |||||++|||+|||||+|||||||+++||+|.||+||||||||+||||+||+|||||||||+++|+|+|++++.++|+||
T Consensus         1 ~A~Kk~~GSt~NgrdS~~krLGvK~~~gq~V~~G~IivRQRGtk~hPG~nVg~GrD~TlfAl~~G~V~f~~~~~~~r~~v   80 (83)
T TIGR00062         1 MATKKGVGSTKNGRDSEAKRLGVKRAGGQFVRAGSIIVRQRGTKFHPGNNVGMGKDHTLFALSDGVVKFEKKGKRSRKFV   80 (83)
T ss_pred             CCcccccCcCCCCCCCCCccceeEecCCEEEcCCcEEEEcCCceECCCCcccccCCCeEEEecceEEEEEEcCCCCCEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999865689999


Q ss_pred             Eee
Q 032857          103 HVE  105 (132)
Q Consensus       103 ~V~  105 (132)
                      +|+
T Consensus        81 ~v~   83 (83)
T TIGR00062        81 SVV   83 (83)
T ss_pred             EEC
Confidence            984

Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain.

>PRK05435 rpmA 50S ribosomal protein L27; Validated

Probab=100.00  E-value=2.8e-45  Score=260.26  Aligned_cols=82  Identities=65%  Similarity=0.997  Sum_probs=79.2

Q ss_pred             eeeccCCccCCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEE
Q 032857           23 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV  102 (132)
Q Consensus        23 ~A~KK~~GStkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V  102 (132)
                      |||||++|||+|||||+|||||||+++||+|.||+||||||||+||||+||+|||||||||+++|+|+|++.. ++|+||
T Consensus         1 mA~KK~~GStkNgrdS~~krLGvK~~~g~~V~~G~IivRQRGtk~~PG~nVg~GrD~TlfA~~~G~V~f~~~~-~~~~~v   79 (82)
T PRK05435          1 MAHKKGGGSTRNGRDSESKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVVKFERKG-RNRKYV   79 (82)
T ss_pred             CCcccccCcCCCCCCCCcccceeEecCCEEEcCCcEEEEeCCCeECCCCCEeecCCceEEEecceEEEEEEcC-CCcEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999874 689999


Q ss_pred             Eee
Q 032857          103 HVE  105 (132)
Q Consensus       103 ~V~  105 (132)
                      +|+
T Consensus        80 ~v~   82 (82)
T PRK05435         80 SVV   82 (82)
T ss_pred             EEC
Confidence            984

>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C

Probab=95.74  E-value=0.022  Score=35.35  Aligned_cols=38  Identities=29%  Similarity=0.547  Sum_probs=32.0

Q ss_pred             EEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEE
Q 032857           52 RVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFE   92 (132)
Q Consensus        52 ~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~   92 (132)
                      .|.||+.|-..  ..|.||.|+.+ +|..|||.+-|.|+..
T Consensus         1 iV~PG~~l~~~--~e~~~G~GTY~-~~g~I~asv~G~v~~~   38 (39)
T PF14382_consen    1 IVVPGDRLGSS--EEYMPGHGTYV-RDGNIYASVAGTVKID   38 (39)
T ss_dssp             EE-TT-EEEET--TTSEESTTEEE-ETTEEEESSSEEEEEE
T ss_pred             CCCCCCEeecC--CCEecCCCEEE-eCCEEEEEeeEEEEEc
Confidence            48899999985  47999999999 8999999999999864

>PRK09521 exosome complex RNA-binding protein Csl4; Provisional

Probab=95.60  E-value=0.033  Score=43.40  Aligned_cols=54  Identities=22%  Similarity=0.395  Sum_probs=43.8

Q ss_pred             CCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCC
Q 032857           49 GGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG  109 (132)
Q Consensus        49 ~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~  109 (132)
                      +++.|.||+.|.-.  -.|.||.|+.. +|.+|||.+-|.+.+..+    ++.|+|.|...
T Consensus         4 ~~~~V~PGe~l~~~--~e~~~G~Gty~-~~~~i~as~~G~~~id~~----~~~Isv~P~~~   57 (189)
T PRK09521          4 QGDLVLPGDYLAVI--EEYLPGEGTYE-DNGEVYASVVGKVFIDDI----NRKISVIPFKK   57 (189)
T ss_pred             cCCEECCCCccccc--cceEcCCCEEe-eCCEEEEEeeEEEEEcCC----CCEEEEecCcC
Confidence            67899999999754  46999999987 678899999999999543    45578877654

>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]

Probab=94.57  E-value=0.13  Score=41.97  Aligned_cols=61  Identities=21%  Similarity=0.329  Sum_probs=50.6

Q ss_pred             eCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCCCccccc
Q 032857           48 FGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPL  115 (132)
Q Consensus        48 ~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~~~~hp~  115 (132)
                      ..|.+|.||+.|..+  -.|.||+|+--= |+.|+|...|.+..+.    +.+.++|.|......+|.
T Consensus         3 ~~g~~v~PGd~~a~~--EE~~~G~gt~~~-~g~i~Aa~~G~~~~d~----~n~~~~V~p~~~~~~~~K   63 (188)
T COG1096           3 KDGTFVLPGDVLAVI--EEFLPGEGTYEE-GGEIRAAATGVVRRDD----KNRVISVKPGKKTPPLPK   63 (188)
T ss_pred             ccCcEEcCcceeeee--eeeecCCCeEeE-CCEEEEeecccEEEcc----cceEEEeccCCCCCCCCC
Confidence            468899999999975  579999999876 9999999999998875    366789999887555554

>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional

Probab=93.41  E-value=0.24  Score=40.16  Aligned_cols=54  Identities=24%  Similarity=0.392  Sum_probs=43.0

Q ss_pred             eeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCCC
Q 032857           47 KFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGH  110 (132)
Q Consensus        47 ~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~~  110 (132)
                      ..++..|.||+.|.-   -.|.||.|+.. +|..|+|.+-|.+.+..      +.++|.|....
T Consensus         5 ~~~~~~V~PGd~l~~---~~~~~G~Gty~-~~g~i~As~~G~~~~~~------~~i~V~p~~~~   58 (235)
T PRK04163          5 VEDRKIVVPGDLLAE---GEFKAGRGTYK-ENGKIYSTVVGLVDIKD------DKVRVIPLEGK   58 (235)
T ss_pred             eeCCcEECCCCCcCc---CCeecCCceEE-eCCEEEEEEeEEEEEEC------CEEEEEECCCc
Confidence            346789999999952   36999999987 78999999999999753      26888876544

>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities

Probab=89.30  E-value=1.1  Score=30.33  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=30.4

Q ss_pred             eEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeC
Q 032857           66 RFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK  107 (132)
Q Consensus        66 kfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~  107 (132)
                      +||.|--+.......++|+.+|+|.|.......-.+|.|.-.
T Consensus         1 r~h~Gid~~~~~g~~V~A~~~G~V~~~~~~~~~g~~V~i~~~   42 (96)
T PF01551_consen    1 RFHNGIDFAAPEGTPVYAPADGKVVFVGEDPGYGNYVIIQHG   42 (96)
T ss_dssp             -EE-SEEEEETTT-EEEESSSEEEEEEEEETTTEEEEEEEET
T ss_pred             CCeeeEEeCCCCCCEEEeCccEEEEEEEeccCCccEEEEEeC
Confidence            588888888888788999999999998874344666666543

The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....

>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function

Probab=87.86  E-value=1.5  Score=38.32  Aligned_cols=44  Identities=27%  Similarity=0.514  Sum_probs=35.6

Q ss_pred             eEEecCcEEee----ccc------------------ceEeCCCceeec-CC-ccEEEeeCeEEEEEEe
Q 032857           51 ERVIPGNIIVR----QRG------------------TRFHPGDYVGMG-KD-HTLYALKEGRVKFEKH   94 (132)
Q Consensus        51 q~V~~G~IIvR----QRG------------------tkfhPG~NVg~G-rD-hTLfAl~~G~V~f~~~   94 (132)
                      ..|.+|+.|++    +.|                  ..|.+|+||.+- .| -+|+|.++|++.|...
T Consensus       107 ~~V~~G~~la~~~p~~~G~~G~~V~G~~I~~~~~~~~~~~~g~~~~~~~~d~~~~~A~~~G~~~~~~~  174 (451)
T PF03961_consen  107 PSVKKGDVLAEKIPPTPGEPGRDVFGEPIPAKPGKDIPLKAGKNTEVSEEDGNKLYAAIDGRPVFENG  174 (451)
T ss_pred             eEECCCCEEEEEccCCCCCCCcccCCCCcCCCCCCccceeCCCCEEEEcCCCCEEEEecCCEEEEECC
Confidence            34888888887    334                  478899999999 77 4799999999999954

The proteins are in the region of 500-600 amino acid residues in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
1vs6_W	85	Crystal Structure Of The Bacterial Ribosome From Es		9e-23
1p85_U	84	Real Space Refined Coordinates Of The 50s Subunit F		1e-22
1nkw_U	91	Crystal Structure Of The Large Ribosomal Subunit Fr		6e-22
3fik_W	79	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		1e-21
1pnu_U	86	Crystal Structure Of A Streptomycin Dependent Ribos		2e-21
1vsa_U	85	Crystal Structure Of A 70s Ribosome-Trna Complex Re		9e-21
3mrz_W	84	Recognition Of The Amber Stop Codon By Release Fact		1e-20
3r8s_W	76	Structures Of The Bacterial Ribosome In Classical A		2e-20
1v8q_A	85	Crystal Structure Of Ribosomal Protein L27 From The		2e-20
2v47_0	85	Structure Of The Ribosome Recycling Factor Bound To		3e-20
3bbo_X	198	Homology Model For The Spinach Chloroplast 50s Subu		4e-20
3r8t_W	75	Structures Of The Bacterial Ribosome In Classical A		7e-20
3tvh_3	77	Crystal Structure Analysis Of Ribosomal Decoding. T		4e-19
3pyo_W	76	Crystal Structure Of A Complex Containing Domain 3		9e-19
3tve_3	76	Crystal Structure Analysis Of Ribosomal Decoding. T		2e-18
2ftc_O	69	Structural Model For The Large Subunit Of The Mamma		2e-11

>pdb|1VS6|W Chain W, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 85

Iteration: 1
 Score =  102 bits (253), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 63/85 (74%)
Query: 23  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+
Sbjct: 1   MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLF 60
Query: 83  ALKEGRVKFEKHKLSGRKWVHVEPK 107
           A  +G+VKFE      RK++ +E +
Sbjct: 61  AKADGKVKFEVKGPKNRKFISIEAE 85

>pdb|1P85|U Chain U, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 84

Iteration: 1
 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 63/84 (75%)
Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A
Sbjct: 1   AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFA 60
Query: 84  LKEGRVKFEKHKLSGRKWVHVEPK 107
             +G+VKFE      RK++ +E +
Sbjct: 61  KADGKVKFEVKGPKNRKFISIEAE 84

>pdb|1NKW|U Chain U, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 91

Iteration: 1
 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Query: 23  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
            A KK  GS+KNGRDS PK LGVKKFGGE V  GNI+VRQRGT+F  G  VGMG+DHTL+
Sbjct: 1   MAHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLF 60
Query: 83  ALKEGRVKFEKHKLSGRKWVHVEPKEGHV 111
           AL +G+V F  +K  G +++ +E  +  V
Sbjct: 61  ALSDGKVVFI-NKGKGARFISIEAAQTEV 88

>pdb|3FIK|W Chain W, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 79

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 60/78 (76%)
Query: 30  GSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRV 89
           GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A  +G+V
Sbjct: 2   GSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKV 61
Query: 90  KFEKHKLSGRKWVHVEPK 107
           KFE      RK++ +E +
Sbjct: 62  KFEVKGPKNRKFISIEAE 79

>pdb|1PNU|U Chain U, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 86

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GS+KNGRDS PK LGVKKFGGE V  GNI+VRQRGT+F  G  VGMG+DHTL+A
Sbjct: 1   AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFA 60
Query: 84  LKEGRVKFEKHKLSGRKWVHVEPKE 108
           L +G+V F  +K  G +++ +E  +
Sbjct: 61  LSDGKVVFI-NKGKGARFISIEAAQ 84

>pdb|1VSA|U Chain U, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 85

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 23  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
            A KK  GSTKNGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+
Sbjct: 1   MAHKKGLGSTKNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLF 60
Query: 83  ALKEGRVKFEKHKLSGRKWVHVEP 106
           AL +G V+F+     GR +VHV P
Sbjct: 61  ALVDGVVEFQDRGRLGR-YVHVRP 83

>pdb|3MRZ|W Chain W, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 84

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GSTKNGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+A
Sbjct: 1   AHKKGLGSTKNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFA 60
Query: 84  LKEGRVKFEKHKLSGRKWVHVEP 106
           L +G V+F+     GR +VHV P
Sbjct: 61  LVDGVVEFQDRGRLGR-YVHVRP 82

>pdb|3R8S|W Chain W, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding Length = 76

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/76 (57%), Positives = 58/76 (76%)
Query: 32  TKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 91
           T+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A  +G+VKF
Sbjct: 1   TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKF 60
Query: 92  EKHKLSGRKWVHVEPK 107
           E      RK++ +E +
Sbjct: 61  EVKGPKNRKFISIEAE 76

>pdb|1V8Q|A Chain A, Crystal Structure Of Ribosomal Protein L27 From Thermus Thermophilus Hb8 Length = 85

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 23  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
            A KK  GST+NGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+
Sbjct: 1   MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLF 60
Query: 83  ALKEGRVKFEKHKLSGRKWVHVEP 106
           AL +G V+F+     GR +VHV P
Sbjct: 61  ALVDGVVEFQDRGRLGR-YVHVRP 83

>pdb|2V47|0 Chain 0, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 2 Of 4). This File Contains The 50s Subunit For Molecule 1. Length = 85

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 23  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
            A KK   ST+NGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+
Sbjct: 1   MAHKKALASTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLF 60
Query: 83  ALKEGRVKFEKHKLSGRKWVHVEP 106
           AL +G V+F+     GR +VHV P
Sbjct: 61  ALVDGVVEFQDRGRLGR-YVHVRP 83

>pdb|3BBO|X Chain X, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 198

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VG+GKDHT+++
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118
Query: 84  LKEGRVKFEKHKLSGRKWVHVEPKE 108
           L +G VKFEK     RK + V P+E
Sbjct: 119 LIDGLVKFEKFG-PDRKKISVYPRE 142

>pdb|3R8T|W Chain W, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding Length = 75

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 57/75 (76%)
Query: 33  KNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFE 92
           +NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A  +G+VKFE
Sbjct: 1   RNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFE 60
Query: 93  KHKLSGRKWVHVEPK 107
                 RK++ +E +
Sbjct: 61  VKGPKNRKFISIEAE 75

>pdb|3TVH|3 Chain 3, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The Second 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 77

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 31  STKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 90
           ST+NGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+AL +G V+
Sbjct: 1   STRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVE 60
Query: 91  FEKHKLSGRKWVHVEP 106
           F+     GR +VHV P
Sbjct: 61  FQDRGRLGR-YVHVRP 75

>pdb|3PYO|W Chain W, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 76

Iteration: 1
 Score = 88.6 bits (218), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 32  TKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 91
           TKNGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+AL +G V+F
Sbjct: 1   TKNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEF 60
Query: 92  EKHKLSGRKWVHVEP 106
           +     GR +VHV P
Sbjct: 61  QDRGRLGR-YVHVRP 74

>pdb|3TVE|3 Chain 3, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 76

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 32  TKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 91
           T+NGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+AL +G V+F
Sbjct: 1   TRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEF 60
Query: 92  EKHKLSGRKWVHVEP 106
           +     GR +VHV P
Sbjct: 61  QDRGRLGR-YVHVRP 74

>pdb|2FTC|O Chain O, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 69

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 24 ATKKTAGSTKN-GRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
          A+KK+ GS+KN G  S  +  G+KK  G  V  GNII  QR  R+HPG +VG+GK+  LY
Sbjct: 1  ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLY 60
Query: 83 ALKEGRVKF 91
          AL+EG V++
Sbjct: 61 ALEEGIVRY 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
2zjr_T	91	50S ribosomal protein L27; ribosome, large ribosom	3e-45
3bbo_X	198	Ribosomal protein L27; large ribosomal subunit, sp	5e-45
3v2d_0	85	50S ribosomal protein L27; ribosome associated inh	2e-43
3r8s_W	76	50S ribosomal protein L27; protein biosynthesis, R	7e-43
2ftc_O	69	L27MT, MRP-L27, mitochondrial 39S ribosomal protei	3e-38

>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ... Length = 91

 Score =  141 bits (357), Expect = 3e-45
 Identities = 51/88 (57%), Positives = 63/88 (71%), Gaps = 1/88 (1%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GS+KNGRDS PK LGVKKFGGE V  GNI+VRQRGT+F  G  VGMG+DHTL+A
Sbjct: 2   AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFA 61

Query: 84  LKEGRVKFEKHKLSGRKWVHVEPKEGHV 111
           L +G+V F   K  G +++ +E  +  V
Sbjct: 62  LSDGKVVFIN-KGKGARFISIEAAQTEV 88

>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 198

 Score =  144 bits (364), Expect = 5e-45
 Identities = 52/101 (51%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 19  MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKD 78
           +    A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VG+GKD
Sbjct: 54  LTIESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKD 113

Query: 79  HTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANA 119
           HT+++L +G VKFEK     RK + V P+E    +P    A
Sbjct: 114 HTIFSLIDGLVKFEK-FGPDRKKISVYPREIVPENPNSYRA 153

>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ... Length = 85

 Score =  136 bits (345), Expect = 2e-43
 Identities = 47/83 (56%), Positives = 61/83 (73%), Gaps = 1/83 (1%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GST+NGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+A
Sbjct: 2   AHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFA 61

Query: 84  LKEGRVKFEKHKLSGRKWVHVEP 106
           L +G V+F+  +    ++VHV P
Sbjct: 62  LVDGVVEFQD-RGRLGRYVHVRP 83

>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W 2qoz_W* ... Length = 76

 Score =  134 bits (340), Expect = 7e-43
 Identities = 44/76 (57%), Positives = 58/76 (76%)

Query: 32  TKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 91
           T+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A  +G+VKF
Sbjct: 1   TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKF 60

Query: 92  EKHKLSGRKWVHVEPK 107
           E      RK++ +E +
Sbjct: 61  EVKGPKNRKFISIEAE 76

>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O Length = 69

 Score =  122 bits (309), Expect = 3e-38
 Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 24 ATKKTAGSTKN-GRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 82
          A+KK+ GS+KN G  S  +  G+KK  G  V  GNII  QR  R+HPG +VG+GK+  LY
Sbjct: 1  ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLY 60

Query: 83 ALKEGRVKF 91
          AL+EG V++
Sbjct: 61 ALEEGIVRY 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
2zjr_T	91	50S ribosomal protein L27; ribosome, large ribosom	100.0
3v2d_0	85	50S ribosomal protein L27; ribosome associated inh	100.0
3bbo_X	198	Ribosomal protein L27; large ribosomal subunit, sp	100.0
3r8s_W	76	50S ribosomal protein L27; protein biosynthesis, R	100.0
2ftc_O	69	L27MT, MRP-L27, mitochondrial 39S ribosomal protei	100.0
2xha_A	193	NUSG, transcription antitermination protein NUSG;	95.93
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	95.24
3m7n_A	179	Putative uncharacterized protein AF_0206; exosome,	93.46
2je6_I	251	RRP4, exosome complex RNA-binding protein 1; nucle	92.01
2nn6_I	209	3'-5' exoribonuclease CSL4 homolog; RNA, exosome,	88.89
2ba0_A	229	Archeal exosome RNA binding protein RRP4; RNAse PH	86.4

>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...

Probab=100.00  E-value=5.2e-49  Score=282.74  Aligned_cols=88  Identities=57%  Similarity=0.942  Sum_probs=82.1

Q ss_pred             eeeccCCccCCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEE
Q 032857           23 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV  102 (132)
Q Consensus        23 ~A~KK~~GStkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V  102 (132)
                      |||||++|||+|||||++||||||+|+||+|.||+||||||||+||||+||||||||||||+++|+|+|+++. ++|+||
T Consensus         1 mAhKK~~GSt~NGRdS~~krLGvK~~gGq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~-~~r~~V   79 (91)
T 2zjr_T            1 MAHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKG-KGARFI   79 (91)
T ss_dssp             -CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEET-TTEEEE
T ss_pred             CCcccCCCCCCCCCCCCCceeeEEecCCeEEcCCeEEEecCCCEEcCCCCEEEcCCCcEEeccceEEEEEEcC-CCcEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999875 799999


Q ss_pred             EeeeCCCCc
Q 032857          103 HVEPKEGHV  111 (132)
Q Consensus       103 ~V~p~~~~~  111 (132)
                      +|+|++.|.
T Consensus        80 ~V~p~~~~~   88 (91)
T 2zjr_T           80 SIEAAQTEV   88 (91)
T ss_dssp             EECCCC---
T ss_pred             EEEeChhhh
Confidence            999976543

>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...

Probab=100.00  E-value=3.8e-48  Score=275.37  Aligned_cols=84  Identities=56%  Similarity=0.915  Sum_probs=73.9

Q ss_pred             eeeccCCccCCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEE
Q 032857           23 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV  102 (132)
Q Consensus        23 ~A~KK~~GStkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V  102 (132)
                      |||||++|||+|||||++||||||+|+||+|.||+||||||||+||||+||||||||||||+++|+|+|++.. ++|+||
T Consensus         1 MAhKK~gGStkNGrdS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~-~~r~~V   79 (85)
T 3v2d_0            1 MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRG-RLGRYV   79 (85)
T ss_dssp             --------CCSCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSEEECTTEEECTTCCEEESSSEEEEEEECG-GGCEEE
T ss_pred             CCcccCCCCCCCCCCCCCccceeEecCCeEEcCCeEEEecCCccCcCCCCEeEcCCCeEEEecCEEEEEEEcC-CCCEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999873 689999


Q ss_pred             EeeeC
Q 032857          103 HVEPK  107 (132)
Q Consensus       103 ~V~p~  107 (132)
                      +|+|+
T Consensus        80 sV~p~   84 (85)
T 3v2d_0           80 HVRPL   84 (85)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99996

>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=6.8e-48  Score=306.88  Aligned_cols=98  Identities=52%  Similarity=0.747  Sum_probs=83.8

Q ss_pred             eeeeeeeeccCCccCCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCC
Q 032857           18 LMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLS   97 (132)
Q Consensus        18 ~~~~r~A~KK~~GStkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~   97 (132)
                      .+++||||||++|||+|||||++||||||+|+||+|.+|+||||||||+||||+||||||||||||+++|+|+|++.. +
T Consensus        53 ~l~VRmAhKKggGSTkNGRDS~~KRLGVK~~gGq~V~aGnIIVRQRGTkfhPG~NVG~GkDhTLFAl~~G~VkF~~~~-~  131 (198)
T 3bbo_X           53 PLTIESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKFG-P  131 (198)
T ss_dssp             ------CCCCSSCCCCCCCCCCCCCCSCSSSBCCSSCSCCSSSSCCCCSSCCCCSSSSCCCCCSBCCSCCCCCSSSSC-C
T ss_pred             hhheeeeeccCCCCCCCCCCCCCceeeEEecCCeEeccCcEEEeccCceEcCCCCeeecCCCceEeccceEEEEEEcC-C
Confidence            557999999999999999999999999999999999999999999999999999999999999999999999999653 7


Q ss_pred             CceEEEeeeCCCCcccccc
Q 032857           98 GRKWVHVEPKEGHVLHPLY  116 (132)
Q Consensus        98 ~r~~V~V~p~~~~~~hp~~  116 (132)
                      +|+||+|+|++.+++||.+
T Consensus       132 ~Rk~VsV~p~~~~~~~p~~  150 (198)
T 3bbo_X          132 DRKKISVYPREIVPENPNS  150 (198)
T ss_dssp             CCSCCCSSCCCCC------
T ss_pred             CcEEEEEEeCCccccCchh
Confidence            8999999999999999983

>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...

Probab=100.00  E-value=7.9e-44  Score=248.82  Aligned_cols=76  Identities=58%  Similarity=1.015  Sum_probs=73.3

Q ss_pred             CCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeC
Q 032857           32 TKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK  107 (132)
Q Consensus        32 tkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~  107 (132)
                      |+|||||++||||+|+|+||+|.||+||||||||+||||+||||||||||||+++|+|+|+++..++|+||+|+|+
T Consensus         1 t~NGRDS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVG~GkD~TLfAl~~G~V~f~~~~~~~r~~VsV~p~   76 (76)
T 3r8s_W            1 TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE   76 (76)
T ss_dssp             CCCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSSEECTTEEECTTSCEEESSSEEEEEEEETTTTEEEEEEECC
T ss_pred             CCCCCCCCcccceEEecCCeEEecCcEEEeccCccCcCCCCeeecCCCeEEEccCEEEEEEEeCCCCCEEEEEEeC
Confidence            6999999999999999999999999999999999999999999999999999999999999876679999999984

>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O

Probab=100.00  E-value=5.2e-43  Score=240.95  Aligned_cols=68  Identities=51%  Similarity=0.841  Sum_probs=67.3

Q ss_pred             eeccCCccCCC-CCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEE
Q 032857           24 ATKKTAGSTKN-GRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF   91 (132)
Q Consensus        24 A~KK~~GStkN-GrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f   91 (132)
                      ||||++|||+| ||||++||||||+++||+|.||+||||||||+||||+||||||||||||+++|+|+|
T Consensus         1 A~KK~~GSt~N~grdS~~krlGvK~~~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~TLfAl~~G~V~f   69 (69)
T 2ftc_O            1 ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVRY   69 (69)
T ss_pred             CcccccCcccCCCCCCCCceeeEEecCCeEecCCeEEEecCCCeEcCCCCeeecCCCcEEEccceEEeC
Confidence            89999999999 999999999999999999999999999999999999999999999999999999997

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=95.93  E-value=0.0036  Score=49.55  Aligned_cols=52  Identities=21%  Similarity=0.195  Sum_probs=38.4

Q ss_pred             eCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCCC---ccccccccc
Q 032857           48 FGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGH---VLHPLYANA  119 (132)
Q Consensus        48 ~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~~---~~hp~~~~~  119 (132)
                      -+|+.|.+|+||.                ||+.++|-++|+|.|.+    +++-|.|.|..++   -|.|.+..-
T Consensus        86 ~dG~~V~~GdvLA----------------Kd~AIiaEIdG~V~fgk----gkrrivI~~~~Ge~~eylIPk~k~i  140 (193)
T 2xha_A           86 RVGTKVKQGLPLS----------------KNEEYICELDGKIVEIE----RMKKVVVQTPDGEQDVYYIPLDVFD  140 (193)
T ss_dssp             CTTCEECTTSBSS----------------TTSCSBCCSSEEEEEEE----EEEEEEEECTTSCEEEEEEEGGGCC
T ss_pred             CCCCEEcCCCEEe----------------cCCeEEEccceEEEECC----CeEEEEEECCCCCEEEEEeCCCCcc
Confidence            4566666666666                99999999999999998    4556777786654   466666554

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=95.24  E-value=0.012  Score=49.57  Aligned_cols=50  Identities=22%  Similarity=0.219  Sum_probs=37.8

Q ss_pred             eeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCCCc---ccccc
Q 032857           47 KFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHV---LHPLY  116 (132)
Q Consensus        47 ~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~~~---~hp~~  116 (132)
                      .-+|+.|.+|+||+                ||+.++|-+||+|.|.++    ++-|.|.|..++.   |.|.+
T Consensus       125 v~~g~~v~~G~vla----------------k~~aiiaeidG~V~fg~~----kr~i~i~~~~g~~~eylip~~  177 (352)
T 2xhc_A          125 LRVGTKVKQGLPLS----------------KNEEYICELDGKIVEIER----MKKVVVQTPDGEQDVYYIPLD  177 (352)
T ss_dssp             CCTTCEECTTCBSB----------------SSSSCBCCSCEEEEEEEE----EEEEEEECTTSCEEEEEEEGG
T ss_pred             cCCCCEEccCcEEe----------------cCceEEeccceEEEECCc----EEEEEEECCCCCEEEEEEcCC
Confidence            34666677777666                999999999999999985    5557777876543   66666

>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A

Probab=93.46  E-value=0.14  Score=38.57  Aligned_cols=55  Identities=20%  Similarity=0.209  Sum_probs=41.9

Q ss_pred             eEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCCCcccc
Q 032857           51 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHP  114 (132)
Q Consensus        51 q~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~~~~hp  114 (132)
                      +.|.||+.|.-.  ..|.||.++..- |..|+|..-|.|.+.      .+.|+|.|.....+.|
T Consensus         2 ~iV~PGd~l~~~--~~~~~G~Gty~~-~~~i~as~~G~v~~~------~~~v~V~~~~~~~y~p   56 (179)
T 3m7n_A            2 RFVMPGDRIGSA--EEYVKGEGVYEE-GGELFAAVAGKLIIK------DRVAKVESISPIPEIV   56 (179)
T ss_dssp             CEECTTCEEEET--TTSEECTTEEEE-TTEEEESSSEEEEEE------TTEEEEEESSCCCCCC
T ss_pred             eEEcCCCCCCCC--CCEeccCCEEEe-CCEEEEEEEEEEEEe------CCEEEEEECCCCcccC
Confidence            478999999754  358999999884 889999999999982      2467888865443444

>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C

Probab=92.01  E-value=0.28  Score=39.12  Aligned_cols=52  Identities=21%  Similarity=0.329  Sum_probs=41.5

Q ss_pred             CCeEEecCcEEeecccceEeCCC--ceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCCC
Q 032857           49 GGERVIPGNIIVRQRGTRFHPGD--YVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGH  110 (132)
Q Consensus        49 ~Gq~V~~G~IIvRQRGtkfhPG~--NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~~  110 (132)
                      +++.|.||+.|...   .|.||.  ++.. .|..|+|.+-|.|.+..      +.|+|.|....
T Consensus        15 ~~~iV~PGd~l~~~---~~~~G~~~Gty~-~~g~i~as~~G~v~~~~------~~v~V~p~~~~   68 (251)
T 2je6_I           15 PRSIVVPGELLAEG---EFQIPWSPYILK-INSKYYSTVVGLFDVKD------TQFEVIPLEGS   68 (251)
T ss_dssp             SSCEECTTCEEEEE---CCCCCCCTTEEE-ETTEEEECSSEEEEEET------TEEEEEESCCS
T ss_pred             CCcEEcCCCCCccC---CeeeCCCCCEEE-ECCEEEEEEEEEEEEeC------CEEEEEECCCc
Confidence            57899999999853   489999  9887 57789999999998652      25888887653

>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2

Probab=88.89  E-value=0.085  Score=41.04  Aligned_cols=59  Identities=14%  Similarity=0.071  Sum_probs=40.2

Q ss_pred             eeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCC
Q 032857           47 KFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG  109 (132)
Q Consensus        47 ~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~  109 (132)
                      ..+++.|.||+.|...  ..|.||.|+.. .|..|||.+-|.|.+... ....+.|+|.|...
T Consensus        16 ~~~~~iV~PGd~l~~~--~~~~~G~Gty~-~~g~I~Asv~G~v~~~~~-~~~~~vi~V~p~~~   74 (209)
T 2nn6_I           16 APPVRYCIPGERLCNL--EEGSPGSGTYT-RHGYIFSSLAGCLMKSSE-NGALPVVSVVRETE   74 (209)
T ss_dssp             ----CCCCTTCEEEET--TTCCCSSSCEE-ETTEEECCSCSCBCCCBC-TTSSBC-CBCCSCC
T ss_pred             cCCCcEEcCCCCCCCC--CCeeecCCEEE-ECCEEEEEEEEEEEEecc-CCcccEEEEecCCC
Confidence            3457889999999854  35899999986 467899999999886532 12345677777643

>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1

Probab=86.40  E-value=0.69  Score=36.26  Aligned_cols=48  Identities=21%  Similarity=0.266  Sum_probs=37.0

Q ss_pred             eEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCC
Q 032857           51 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE  108 (132)
Q Consensus        51 q~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~  108 (132)
                      +.|.||+.|..   ..|.||.|+.. .|..|+|.+-|.|.+..     + .|+|.|..
T Consensus         3 ~iV~PGd~l~~---~~~~~G~Gty~-~~g~i~as~~G~v~~~~-----~-~v~V~p~~   50 (229)
T 2ba0_A            3 KIVLPGDLLST---NPRAAGYGTYV-EGGKVYAKIIGLFDQTE-----T-HVRVIPLK   50 (229)
T ss_dssp             CEECTTCEEES---CTTSBCTTEEE-ETTEEEECSSEEEEECS-----S-CEEEEECS
T ss_pred             CEEcCCCCccc---CCeEecCCEEE-eCCEEEEEEEEEEEEeC-----C-EEEEEeCC
Confidence            57999999983   34889999987 67889999999988542     1 37777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d2gycu1	84	b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherich	1e-39
d2zjrt1	84	b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococc	7e-39
d1v8qa_	66	b.84.4.1 (A:) Ribosomal protein L27 {Thermus therm	3e-31

>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli [TaxId: 562]} Length = 84

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Escherichia coli [TaxId: 562]

 Score =  125 bits (317), Expect = 1e-39
 Identities = 49/83 (59%), Positives = 62/83 (74%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A
Sbjct: 1   AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFA 60

Query: 84  LKEGRVKFEKHKLSGRKWVHVEP 106
             +G+VKFE      RK++ +E 
Sbjct: 61  KADGKVKFEVKGPKNRKFISIEA 83

>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus radiodurans [TaxId: 1299]} Length = 84

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  124 bits (312), Expect = 7e-39
 Identities = 50/85 (58%), Positives = 62/85 (72%), Gaps = 1/85 (1%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GS+KNGRDS PK LGVKKFGGE V  GNI+VRQRGT+F  G  VGMG+DHTL+A
Sbjct: 1   AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFA 60

Query: 84  LKEGRVKFEKHKLSGRKWVHVEPKE 108
           L +G+V F   K  G +++ +E  +
Sbjct: 61  LSDGKVVFIN-KGKGARFISIEAAQ 84

>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]} Length = 66

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Thermus thermophilus [TaxId: 274]

 Score =  103 bits (260), Expect = 3e-31
 Identities = 35/64 (54%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 43  LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV 102
           LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+AL +G V+F+  +    ++V
Sbjct: 2   LGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQD-RGRLGRYV 60

Query: 103 HVEP 106
           HV P
Sbjct: 61  HVRP 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d2zjrt1	84	Ribosomal protein L27 {Deinococcus radiodurans [Ta	100.0
d2gycu1	84	Ribosomal protein L27 {Escherichia coli [TaxId: 56	100.0
d1v8qa_	66	Ribosomal protein L27 {Thermus thermophilus [TaxId	100.0
d2ba0a2	51	Exosome complex RNA-binding protein 1, ECR1 {Archa	96.27
d2je6i2	59	Exosome complex RNA-binding protein 1, ECR1 {Sulfo	92.01
d2nn6h2	48	Ribosomal RNA-processing protein 4, RRP4 {Human (H	90.69
d2nn6i2	55	Exosome component 1, EXOSC1 {Human (Homo sapiens)	88.57

>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=7.1e-47  Score=266.64  Aligned_cols=84  Identities=58%  Similarity=0.980  Sum_probs=81.4

Q ss_pred             eeccCCccCCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEE
Q 032857           24 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVH  103 (132)
Q Consensus        24 A~KK~~GStkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~  103 (132)
                      ||||++|||+|||||+|||||||+|+||+|.||+||||||||+||||+||+|||||||||+++|+|+|++.. ++|+||+
T Consensus         1 A~KK~~GSt~NgrdS~~krlGvK~~~Gq~V~~G~IivRQRGtk~hpG~nVg~GkD~TLfA~~~G~V~F~k~~-~~rk~V~   79 (84)
T d2zjrt1           1 AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKG-KGARFIS   79 (84)
T ss_dssp             CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEET-TTEEEEE
T ss_pred             CCccccCCCCCCCCCCCccceEEECCCEEEeCCcEEEEecCceEcCCCCccccCCCcEEEeeceEEEEEEcC-CCCEEEE
Confidence            899999999999999999999999999999999999999999999999999999999999999999999874 6899999


Q ss_pred             eeeCC
Q 032857          104 VEPKE  108 (132)
Q Consensus       104 V~p~~  108 (132)
                      |+|.+
T Consensus        80 V~p~e   84 (84)
T d2zjrt1          80 IEAAQ   84 (84)
T ss_dssp             ECCCC
T ss_pred             EEeCC
Confidence            99975

>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9e-48  Score=271.17  Aligned_cols=84  Identities=58%  Similarity=0.991  Sum_probs=80.8

Q ss_pred             eeccCCccCCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEE
Q 032857           24 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVH  103 (132)
Q Consensus        24 A~KK~~GStkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~  103 (132)
                      ||||++|||+|||||+|||||||+|+||+|.||+||||||||+||||+||||||||||||+++|+|+|+++..++|+||+
T Consensus         1 A~KK~~GSs~NgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~hPG~nVg~GkD~TLfAl~~G~V~F~~~~~~~r~~V~   80 (84)
T d2gycu1           1 AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFIS   80 (84)
T ss_dssp             CCCCSCCSCCCCCCCCCBCCCCSSSCCCSSCCSBSSCCCCCCSSCCCCCSSSCCCCCCCCCSCCCCSSSSSSCSCCCCCC
T ss_pred             CCccccccCCCCCCCCCccceeEEcCCEEEcCCcEEEEeccceEcCCCCeeecCCCeEEEeccEEEEEEEcCCCCCEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999876557899999


Q ss_pred             eeeC
Q 032857          104 VEPK  107 (132)
Q Consensus       104 V~p~  107 (132)
                      |+++
T Consensus        81 V~~e   84 (84)
T d2gycu1          81 IEAE   84 (84)
T ss_dssp             SSCC
T ss_pred             EEeC
Confidence            9875

>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-36  Score=206.16  Aligned_cols=66  Identities=53%  Similarity=0.931  Sum_probs=63.0

Q ss_pred             cceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCC
Q 032857           42 NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE  108 (132)
Q Consensus        42 rLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~  108 (132)
                      |||||+|+||+|.||+||||||||+||||+||+|||||||||+++|+|+|++.. ++|+||+|+|..
T Consensus         1 RLGvK~~~Gq~V~~G~IivRQRGtk~~pG~nVg~GkD~TLfAl~~G~V~F~~~~-~~~~~VsV~P~a   66 (66)
T d1v8qa_           1 RLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRG-RLGRYVHVRPLA   66 (66)
T ss_dssp             CCEECSCTTCEECTTCEEEECSSCSSEECTTEEECTTCCEEESSSEEEEEEECG-GGCEEEEEEECC
T ss_pred             CCccEEeCCEEEeCCeEEEEeccCeEeCCCCeeecCCCcEEEeeeeEEEEEEeC-CCCeEEEEEECC
Confidence            799999999999999999999999999999999999999999999999999874 689999999963

>d2ba0a2 b.84.4.2 (A:2-52) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: ECR1 N-terminal domain-like
domain: Exosome complex RNA-binding protein 1, ECR1
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.27  E-value=0.0025  Score=39.15  Aligned_cols=49  Identities=22%  Similarity=0.302  Sum_probs=40.0

Q ss_pred             eEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCC
Q 032857           51 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG  109 (132)
Q Consensus        51 q~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~  109 (132)
                      +.|.||++|.-  + .|.||.|+.+ .|..|+|.+-|.|...      -+.|+|.|..+
T Consensus         2 ~iV~PGe~i~~--~-~~~~G~Gty~-~~~~i~ss~~G~v~~~------n~~i~V~PL~g   50 (51)
T d2ba0a2           2 KIVLPGDLLST--N-PRAAGYGTYV-EGGKVYAKIIGLFDQT------ETHVRVIPLKG   50 (51)
T ss_dssp             CEECTTCEEES--C-TTSBCTTEEE-ETTEEEECSSEEEEEC------SSCEEEEECSS
T ss_pred             CEEcCCcEeec--C-CeeCCCCcEE-ECCEEEEEEEEEEEEE------CCEEEEEeCcc
Confidence            57999999975  4 4999999999 5789999999999764      23589988753

>d2je6i2 b.84.4.2 (I:7-65) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: ECR1 N-terminal domain-like
domain: Exosome complex RNA-binding protein 1, ECR1
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.01  E-value=0.11  Score=32.42  Aligned_cols=53  Identities=21%  Similarity=0.298  Sum_probs=38.4

Q ss_pred             eeCCeEEecCcEEeecccceEeC-CCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCC
Q 032857           47 KFGGERVIPGNIIVRQRGTRFHP-GDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE  108 (132)
Q Consensus        47 ~~~Gq~V~~G~IIvRQRGtkfhP-G~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~  108 (132)
                      .-+-+.|.||++|..  |..|.| |.++.. .|..|||.+-|.|.+..+      .|+|.|.+
T Consensus         5 v~~r~iV~PGdvi~~--~~~~~~~g~~ty~-~~~ki~asv~G~v~~~nk------li~ViPL~   58 (59)
T d2je6i2           5 LQPRSIVVPGELLAE--GEFQIPWSPYILK-INSKYYSTVVGLFDVKDT------QFEVIPLE   58 (59)
T ss_dssp             CCSSCEECTTCEEEE--ECCCCCCCTTEEE-ETTEEEECSSEEEEEETT------EEEEEESC
T ss_pred             EcCCeEECCCcEeee--CCccccCCCEEEe-cCCEEEEEEEEEEEEECC------EEEEEECC
Confidence            346689999999985  455553 544421 347899999999998732      58888875

>d2nn6h2 b.84.4.2 (H:25-72) Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: ECR1 N-terminal domain-like
domain: Ribosomal RNA-processing protein 4, RRP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.69  E-value=0.18  Score=30.66  Aligned_cols=47  Identities=32%  Similarity=0.475  Sum_probs=37.4

Q ss_pred             eEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeee
Q 032857           51 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP  106 (132)
Q Consensus        51 q~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p  106 (132)
                      +.|.||++|-.+-+  |.+|-+..+- |..|+|.+.|.|+-.      -|.|+|.|
T Consensus         1 ~iv~PGe~It~~~~--~mrGHGTy~~-~~~i~aSv~G~verv------NKLvsV~p   47 (48)
T d2nn6h2           1 HLVVPGDTITTDTG--FMRGHGTYMG-EEKLIASVAGSVERV------NKLICVKA   47 (48)
T ss_dssp             CBCCTTCBCCCCTT--CCBCTTEEEC-SSSEEECSSEEEEEE------TTEEEEEE
T ss_pred             CEecCCcEeecCCC--eEcccccEec-CCEEEEEEeeeEEEe------ccEEEEEc
Confidence            35889999987755  8999999995 889999999999543      34577776

>d2nn6i2 b.84.4.2 (I:6-60) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: ECR1 N-terminal domain-like
domain: Exosome component 1, EXOSC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.57  E-value=0.029  Score=34.94  Aligned_cols=50  Identities=16%  Similarity=0.145  Sum_probs=38.2

Q ss_pred             EEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEee
Q 032857           52 RVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE  105 (132)
Q Consensus        52 ~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~  105 (132)
                      ++.||+.|..-  -.|.||.|+.. ++..|||.+-|.|.+.++ .+....|+|.
T Consensus         2 ~~lPGe~L~~~--eey~~G~gTy~-~~g~I~as~~G~v~id~~-~~~isVisV~   51 (55)
T d2nn6i2           2 YCIPGERLCNL--EEGSPGSGTYT-RHGYIFSSLAGCLMKSSE-NGALPVVSVV   51 (55)
T ss_dssp             CCCTTCEEEET--TTCCCSSSCEE-ETTEEECCSCSCBCCCBC-TTSSBC-CBC
T ss_pred             cccCCcEEeeh--heecCCCCeEE-cCCEEEEEeeEEEEEecC-CCEeeEEEEE
Confidence            67899999886  46889999987 557899999999998664 2445556554