Citrus Sinensis ID: 032859

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MAMNQITSLRSFIMVKETVGKVGQRTFAAGASKAKKGGKGAASDAPKASILSKEVKSTTVVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRAKIKENNSVKAKN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccHHcccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccHHHHHHccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccHHHHHHHHHHcHHcccccccccccccccccccccccccHHccccEEEEEEEEccccccccccccHcHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MAMNQITSLRSFIMVKETVGKVGQRTFAAGaskakkggkgaasdapkasilskeVKSTTVVGAnilkegsdpkvlpdseypDWLWHLLEkrpalselkmknietlpyEDLKRFLKLDNRakikennsvkakn
Flexible Loop (DISEMBL)
mamnqitslrsfIMVKETVGKVGQRTFAagaskakkggkgaasdapkasilskevksttvvganilkegsdpkvlpdSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLkldnrakikennsvkakn
Low Complexity Region (SEG)
MAMNQITSLRSFIMVKETVGKVGQRTFaagaskakkggkgaasdapkasILSKEVKSTTVVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRAKIKENNSVKAKN
Disordered region (IsUnstruct)
*********RSFIMVKETVGKV*************************************VVGANIL********L*DSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKL****************
Disordered Region (DISOPRED)
********LRSFIMVKETVGKVG***********************************TVVGANILKEGSDPKVLPDSEYPDWLWHLL******************YEDLKRFLKLDNRAKI***N******
Disordered Region (DISEMBL)
MAMNQITSLRSFIMVKETVGKVGQRTFA*******************ASILSKEVKSTTVVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRAKIKE********
Disordered Region (DISPRO)
*A*NQITSLRSFIMVKETVGKVGQRTFAA*************************VKSTTVVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRAKIKENNSV****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAMNQITSLRSFIMVKETVGKVGQRTFAAGASKAKKGGKGAASDAPKASILSKEVKSTTVVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRAKIKENNSVKAKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q1LXI5	135	39S ribosomal protein L54	yes	no	0.378	0.370	0.384	0.0003
Q6P161	138	39S ribosomal protein L54	yes	no	0.530	0.507	0.405	0.0004

>sp|Q1LXI5|RM54_DANRE 39S ribosomal protein L54, mitochondrial OS=Danio rerio GN=mrpl54 PE=3 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 38 GKGAASDAPKASILSKEVK--STTVVGANILKEGSDPKVLPDSEYPDWLWHL 87
          GKG   +  K   + K+     T  VG N+ K+G DP + P  EYP+WL+ L
Sbjct: 45 GKGMVKEVLKGPEVCKDPAKLCTYAVGVNVFKQGEDPTIKPKDEYPEWLFQL 96

Danio rerio (taxid: 7955)

>sp|Q6P161|RM54_HUMAN 39S ribosomal protein L54, mitochondrial OS=Homo sapiens GN=MRPL54 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 18 TVGKVGQRTFAA-GASKAKKGGKGA-ASDAPK-ASILSKEVKSTT-VVGANILKEGSDPK 73
          T G++  R +A     K  K GKGA  S+A K   + +  V+ TT  +G NI KEG D  
Sbjct: 26 TSGRLLARDYAKKPVMKGAKSGKGAVTSEALKDPDVCTDPVQLTTYAMGVNIYKEGQDVP 85

Query: 74 VLPDSEYPDWLWHL 87
          + PD+EYP+WL+ +
Sbjct: 86 LKPDAEYPEWLFEM 99

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
225452184	132	PREDICTED: 54S ribosomal protein L37, mi	1.0	1.0	0.719	6e-46
351726465	131	uncharacterized protein LOC100499962 [Gl	0.992	1.0	0.712	4e-44
351723687	131	uncharacterized protein LOC100527927 [Gl	0.992	1.0	0.704	3e-43
224055671	131	predicted protein [Populus trichocarpa]	0.992	1.0	0.734	1e-42
217071132	131	unknown [Medicago truncatula] gi|3884911	0.984	0.992	0.676	2e-42
388492172	131	unknown [Lotus japonicus]	0.992	1.0	0.704	2e-42
255537007	130	conserved hypothetical protein [Ricinus	0.984	1.0	0.712	9e-42
357499801	131	hypothetical protein MTR_6g078300 [Medic	0.984	0.992	0.684	3e-41
186522803	132	Mitochondrial ribosomal protein L37 [Ara	0.886	0.886	0.661	5e-38
116830633	133	unknown [Arabidopsis thaliana]	0.886	0.879	0.661	6e-38

>gi|225452184|ref|XP_002265795.1| PREDICTED: 54S ribosomal protein L37, mitochondrial-like [Vitis vinifera]

 Score =  188 bits (477), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 95/132 (71%), Positives = 110/132 (83%)

Query: 1   MAMNQITSLRSFIMVKETVGKVGQRTFAAGASKAKKGGKGAASDAPKASILSKEVKSTTV 60
           M MN+I S+RS I+ +E V  VG RTFA G    K    G ASDAPKAS LSKEVKSTT 
Sbjct: 1   MTMNRIKSVRSIIITREAVRLVGCRTFAVGGKAKKGSKGGGASDAPKASTLSKEVKSTTT 60

Query: 61  VGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRA 120
           VGANILK+G+DPKVLPDSEYPDWLWHLL+KRPALSEL+ K++E+LPYE LKRF+KLDNRA
Sbjct: 61  VGANILKDGTDPKVLPDSEYPDWLWHLLDKRPALSELRRKSVESLPYEALKRFVKLDNRA 120

Query: 121 KIKENNSVKAKN 132
           +IKENN++KAKN
Sbjct: 121 RIKENNNLKAKN 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726465|ref|NP_001238663.1| uncharacterized protein LOC100499962 [Glycine max] gi|255628043|gb|ACU14366.1| unknown [Glycine max]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 108/132 (81%), Gaps = 1/132 (0%)

Query: 1   MAMNQITSLRSFIMVKETVGKVGQRTFAAGASKAKKGGKGAASDAPKASILSKEVKSTTV 60
           MAMN+   +R  +  KE VG   QRTFA G +K    G  AA+DAPKAS LSKEVKS+TV
Sbjct: 1   MAMNRARYIRHILTTKEVVGVACQRTFATGKAKKGSKGG-AAADAPKASTLSKEVKSSTV 59

Query: 61  VGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRA 120
           VGANILKEG+DPK+ PDSEYPDWLWHLL+KRPALSEL+ +NI+TL YEDLKRF+KLD RA
Sbjct: 60  VGANILKEGTDPKIQPDSEYPDWLWHLLDKRPALSELRRRNIDTLSYEDLKRFVKLDTRA 119

Query: 121 KIKENNSVKAKN 132
           +IKENNSVKAKN
Sbjct: 120 RIKENNSVKAKN 131

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723687|ref|NP_001235752.1| uncharacterized protein LOC100527927 [Glycine max] gi|255633590|gb|ACU17154.1| unknown [Glycine max]

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 107/132 (81%), Gaps = 1/132 (0%)

Query: 1   MAMNQITSLRSFIMVKETVGKVGQRTFAAGASKAKKGGKGAASDAPKASILSKEVKSTTV 60
           MAMN   S+R  +  KE VG   QRTFA G +K    G  AA+DAPKAS LSKEVKS+TV
Sbjct: 1   MAMNHARSIRHILTTKEVVGVACQRTFATGKAKKGSKGG-AAADAPKASTLSKEVKSSTV 59

Query: 61  VGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRA 120
           VGA+ILKEG+DPK+ PDSEYPDWLWHLL+K PALSEL+ +NI+TL YEDLKRF+KLD RA
Sbjct: 60  VGASILKEGTDPKIQPDSEYPDWLWHLLDKCPALSELRRRNIDTLSYEDLKRFVKLDTRA 119

Query: 121 KIKENNSVKAKN 132
           +IKENNSVKAKN
Sbjct: 120 RIKENNSVKAKN 131

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055671|ref|XP_002298595.1| predicted protein [Populus trichocarpa] gi|222845853|gb|EEE83400.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/132 (73%), Positives = 109/132 (82%), Gaps = 1/132 (0%)

Query: 1   MAMNQITSLRSFIMVKETVGKVGQRTFAAGASKAKKGGKGAASDAPKASILSKEVKSTTV 60
           MAMN I SLR  ++ KE VG V +RTF+AGA K    G  AA+DAPKAS L KEVKSTT 
Sbjct: 1   MAMNCIKSLRGIVITKEAVGIVDRRTFSAGAKKKGGKGG-AAADAPKASSLGKEVKSTTT 59

Query: 61  VGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRA 120
           VGANILK+G+DPKVL DSEYPDWLW LL+KRPALSEL+ KNIETLP+EDLKRF+KLDNRA
Sbjct: 60  VGANILKDGTDPKVLDDSEYPDWLWRLLDKRPALSELRRKNIETLPFEDLKRFVKLDNRA 119

Query: 121 KIKENNSVKAKN 132
           +IKENN  KAKN
Sbjct: 120 RIKENNFSKAKN 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071132|gb|ACJ83926.1| unknown [Medicago truncatula] gi|388491162|gb|AFK33647.1| unknown [Medicago truncatula]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/133 (67%), Positives = 107/133 (80%), Gaps = 3/133 (2%)

Query: 1   MAMNQITSLRSFIMVKETVGKVGQRTFAAGASKAKKGGKGAA-SDAPKASILSKEVKSTT 59
           M MN   S+R  +  K  V  V QRTFA G  KAKKG KG   SDA KAS LSKEVK++T
Sbjct: 1   MLMNHARSVRRILSTKVAVSVVCQRTFATG--KAKKGSKGVGPSDALKASTLSKEVKAST 58

Query: 60  VVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNR 119
           VVGANILK+G+DPK+LP+S+YPDWL  L++KRPALSEL+ KN++TL YEDLKR++KLDNR
Sbjct: 59  VVGANILKDGTDPKILPNSKYPDWLCQLIDKRPALSELRRKNVDTLLYEDLKRYVKLDNR 118

Query: 120 AKIKENNSVKAKN 132
           AKIKENNS+KAKN
Sbjct: 119 AKIKENNSLKAKN 131

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492172|gb|AFK34152.1| unknown [Lotus japonicus]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 106/132 (80%), Gaps = 1/132 (0%)

Query: 1   MAMNQITSLRSFIMVKETVGKVGQRTFAAGASKAKKGGKGAASDAPKASILSKEVKSTTV 60
           MAMN + S+R  +  KE VG   +R FA G +K    G GA    PKAS LSKEVKS+TV
Sbjct: 1   MAMNYVRSVRHVLTTKEAVGVASKRAFATGKAKKGSKGGGAGD-GPKASSLSKEVKSSTV 59

Query: 61  VGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRA 120
           VGANILKEGSDPK+LPDSEYPDWLWHLL+KRPALSEL+ KNIETL YE LKR++KLDNRA
Sbjct: 60  VGANILKEGSDPKILPDSEYPDWLWHLLDKRPALSELRRKNIETLSYEYLKRYVKLDNRA 119

Query: 121 KIKENNSVKAKN 132
           +IKENNS+KAKN
Sbjct: 120 RIKENNSLKAKN 131

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537007|ref|XP_002509570.1| conserved hypothetical protein [Ricinus communis] gi|223549469|gb|EEF50957.1| conserved hypothetical protein [Ricinus communis]

 Score =  174 bits (442), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 108/132 (81%), Gaps = 2/132 (1%)

Query: 1   MAMNQITSLRSFIMVKETVGKVGQRTFAAGASKAKKGGKGAASDAPKASILSKEVKSTTV 60
           MAM+ I SLR  ++ KE +  V QRTFA  +   K G  GAA+DA K + LSKEVKSTTV
Sbjct: 1   MAMHCIKSLRGIVITKEAIRIVNQRTFAT-SKAKKGGKGGAAADAQKET-LSKEVKSTTV 58

Query: 61  VGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRA 120
           VGANILK+G+DPK+LPDS+YPDWLWHLL+KR  LSEL+ KNIETLPYEDLKRF+KLDNRA
Sbjct: 59  VGANILKDGADPKILPDSDYPDWLWHLLDKRLPLSELRRKNIETLPYEDLKRFVKLDNRA 118

Query: 121 KIKENNSVKAKN 132
            IKENNSVKAKN
Sbjct: 119 SIKENNSVKAKN 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357499801|ref|XP_003620189.1| hypothetical protein MTR_6g078300 [Medicago truncatula] gi|217069986|gb|ACJ83353.1| unknown [Medicago truncatula] gi|355495204|gb|AES76407.1| hypothetical protein MTR_6g078300 [Medicago truncatula] gi|388518995|gb|AFK47559.1| unknown [Medicago truncatula]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 91/133 (68%), Positives = 109/133 (81%), Gaps = 3/133 (2%)

Query: 1   MAMNQITSLRSFIM-VKETVGKVGQRTFAAGASKAKKGGKGAASDAPKASILSKEVKSTT 59
           MAMN + S+RS +    E +G   QRTFA G +K  K   GA++D PK S LSKEVK++T
Sbjct: 1   MAMNHVRSVRSILSSTNEAIGVAYQRTFATGKAKKGK--GGASADGPKESSLSKEVKAST 58

Query: 60  VVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNR 119
           VVG NILKEG+DPK+LPDSEYPDWLWHLL+KRPALSEL+ K I+TLPYEDLKR++KLDNR
Sbjct: 59  VVGGNILKEGTDPKILPDSEYPDWLWHLLDKRPALSELRRKEIDTLPYEDLKRYVKLDNR 118

Query: 120 AKIKENNSVKAKN 132
           A+IKENNS+KAKN
Sbjct: 119 ARIKENNSLKAKN 131

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186522803|ref|NP_196933.2| Mitochondrial ribosomal protein L37 [Arabidopsis thaliana] gi|91805641|gb|ABE65549.1| hypothetical protein At5g14290 [Arabidopsis thaliana] gi|332004630|gb|AED92013.1| Mitochondrial ribosomal protein L37 [Arabidopsis thaliana]

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 99/118 (83%), Gaps = 1/118 (0%)

Query: 16  KETVGKVGQRTFAAGASKAKKGGKG-AASDAPKASILSKEVKSTTVVGANILKEGSDPKV 74
           K+ +  V QRTFA  A KAKK G+G   +DAPKAS LSKE+KS+ VV AN LK+G DPK+
Sbjct: 15  KDVMRFVCQRTFATAAGKAKKVGRGDGGNDAPKASNLSKEIKSSMVVSANTLKDGLDPKI 74

Query: 75  LPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRAKIKENNSVKAKN 132
           LP+S++PD+LWHLL+KRPALSEL+ KN+ETL ++DLKRF+KLD RA+IKEN+S+KAKN
Sbjct: 75  LPNSDHPDYLWHLLDKRPALSELRRKNVETLSFDDLKRFVKLDTRARIKENHSIKAKN 132

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830633|gb|ABK28274.1| unknown [Arabidopsis thaliana]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 99/118 (83%), Gaps = 1/118 (0%)

Query: 16  KETVGKVGQRTFAAGASKAKKGGKG-AASDAPKASILSKEVKSTTVVGANILKEGSDPKV 74
           K+ +  V QRTFA  A KAKK G+G   +DAPKAS LSKE+KS+ VV AN LK+G DPK+
Sbjct: 15  KDVMRFVCQRTFATAAGKAKKVGRGDGGNDAPKASNLSKEIKSSMVVSANTLKDGLDPKI 74

Query: 75  LPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRAKIKENNSVKAKN 132
           LP+S++PD+LWHLL+KRPALSEL+ KN+ETL ++DLKRF+KLD RA+IKEN+S+KAKN
Sbjct: 75  LPNSDHPDYLWHLLDKRPALSELRRKNVETLSFDDLKRFVKLDTRARIKENHSIKAKN 132

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2082334	126	AT3G01740 "AT3G01740" [Arabido	0.621	0.650	0.817	8.3e-35
TAIR|locus:2145703	132	AT5G14290 "AT5G14290" [Arabido	0.621	0.621	0.707	4.4e-29
CGD|CAL0001865	120	MRPL37 [Candida albicans (taxi	0.484	0.533	0.352	3.8e-07
UNIPROTKB|Q59VH8	120	MRPL37 "Likely mitochondrial r	0.484	0.533	0.352	3.8e-07
UNIPROTKB|G4MY41	201	MGG_11244 "Uncharacterized pro	0.287	0.189	0.473	4.3e-07
FB|FBgn0034579	132	mRpL54 "mitochondrial ribosoma	0.212	0.212	0.678	2.6e-06
SGD|S000000472	105	MRPL37 "Mitochondrial ribosoma	0.507	0.638	0.338	1.1e-05
UNIPROTKB|F1N148	138	MRPL54 "39S ribosomal protein	0.560	0.536	0.337	3e-05
ZFIN|ZDB-GENE-050208-381	135	mrpl54 "mitochondrial ribosoma	0.477	0.466	0.382	3e-05
UNIPROTKB|Q3MHJ5	138	MRPL54 "39S ribosomal protein	0.560	0.536	0.337	5e-05

TAIR|locus:2082334 AT3G01740 "AT3G01740" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 67/82 (81%), Positives = 78/82 (95%)

Query:    51 LSKEVKSTTVVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDL 110
             L+KE+KSTTVVGAN LK+GSDPK+LPDS+YPDWLWHLL+KRPALSEL+ KN+ETLPY+DL
Sbjct:    45 LTKEIKSTTVVGANTLKDGSDPKILPDSDYPDWLWHLLDKRPALSELRRKNVETLPYDDL 104

Query:   111 KRFLKLDNRAKIKENNSVKAKN 132
             KRF+KLD R KIKENNS+KAKN
Sbjct:   105 KRFVKLDTRGKIKENNSIKAKN 126

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2145703 AT5G14290 "AT5G14290" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 58/82 (70%), Positives = 75/82 (91%)

Query:    51 LSKEVKSTTVVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDL 110
             LSKE+KS+ VV AN LK+G DPK+LP+S++PD+LWHLL+KRPALSEL+ KN+ETL ++DL
Sbjct:    51 LSKEIKSSMVVSANTLKDGLDPKILPNSDHPDYLWHLLDKRPALSELRRKNVETLSFDDL 110

Query:   111 KRFLKLDNRAKIKENNSVKAKN 132
             KRF+KLD RA+IKEN+S+KAKN
Sbjct:   111 KRFVKLDTRARIKENHSIKAKN 132

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0001865 MRPL37 [Candida albicans (taxid:5476)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 24/68 (35%), Positives = 39/68 (57%)

Query:    59 TVVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDN 118
             TV+   + K+G +P    DSEYP+WLW +L+ +  L  ++  N + L +  +K  L  +N
Sbjct:    52 TVLNLKVFKKGDEPVAKEDSEYPEWLWTMLDPKDNLKAIQ--NEDFLRWRRIK--LSKEN 107

Query:   119 RAKIKENN 126
              + IK NN
Sbjct:   108 NSTIKNNN 115

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59VH8 MRPL37 "Likely mitochondrial ribosome protein MRPL37p" [Candida albicans SC5314 (taxid:237561)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 24/68 (35%), Positives = 39/68 (57%)

Query:    59 TVVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDN 118
             TV+   + K+G +P    DSEYP+WLW +L+ +  L  ++  N + L +  +K  L  +N
Sbjct:    52 TVLNLKVFKKGDEPVAKEDSEYPEWLWTMLDPKDNLKAIQ--NEDFLRWRRIK--LSKEN 107

Query:   119 RAKIKENN 126
              + IK NN
Sbjct:   108 NSTIKNNN 115

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4MY41 MGG_11244 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 88 (36.0 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
 Identities = 18/38 (47%), Positives = 20/38 (52%)

Query:    51 LSKEVKSTTVVGANILKEGSDPKVLPDSEYPDWLWHLL 88
             LS   K T + G N  K+ SDP  L D  YP WLW  L
Sbjct:    61 LSSCPKGTILKGLNYFKDKSDPVALADDAYPAWLWDCL 98

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0034579 mRpL54 "mitochondrial ribosomal protein L54" [Drosophila melanogaster (taxid:7227)]

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 19/28 (67%), Positives = 21/28 (75%)

Query:    60 VVGANILKEGSDPKVLPDSEYPDWLWHL 87
             V G+N LK G D K+ PDSEYPDWLW L
Sbjct:    66 VCGSNYLKTGEDIKIKPDSEYPDWLWTL 93

GO:0032543 "mitochondrial translation" evidence=IC

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

SGD|S000000472 MRPL37 "Mitochondrial ribosomal protein of the large subunit" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query:    59 TVVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDN 118
             T +  NI K G D   L D EYP+WLW +L+    + E   ++ E       ++ ++  N
Sbjct:    34 TSLNLNIWKSGKDAVALEDKEYPNWLWSVLDSDHVV-EHAAEDPEGQALLKRRKNIRKAN 92

Query:   119 RAKIKENN 126
             R +IK+NN
Sbjct:    93 RQRIKQNN 100

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0005840 "ribosome" evidence=IEA

GO:0030435 "sporulation resulting in formation of a cellular spore" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0032543 "mitochondrial translation" evidence=IC

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1N148 MRPL54 "39S ribosomal protein L54, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 26/77 (33%), Positives = 41/77 (53%)

Query:    50 ILSKEVKSTT-VVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYE 108
             + +  V+ TT  +G NI KEG D  + PDSEYP+WL+ +    P   +L+  + ET  Y 
Sbjct:    61 VCTDPVQLTTHAMGVNIYKEGQDVVLKPDSEYPEWLFQMNVGPP--KKLEELDPETREYW 118

Query:   109 DLKRFLKLDNRAKIKEN 125
              L R   +    ++ +N
Sbjct:   119 RLLRKHNIWRHNRLSKN 135

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-050208-381 mrpl54 "mitochondrial ribosomal protein L54" [Danio rerio (taxid:7955)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 26/68 (38%), Positives = 37/68 (54%)

Query:    58 TTVVGANILKEGSDPKVLPDSEYPDWLWHL-LEKRPALSELKMKNIE---TLPYEDLKRF 113
             T  VG N+ K+G DP + P  EYP+WL+ L L     L+EL+  + E    +  E + R 
Sbjct:    67 TYAVGVNVFKQGEDPTIKPKDEYPEWLFQLNLGPVKQLNELEPDSWEYWRRIRKEHIWRH 126

Query:   114 LKLDNRAK 121
              KL N+ K
Sbjct:   127 NKL-NKGK 133

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|Q3MHJ5 MRPL54 "39S ribosomal protein L54, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 26/77 (33%), Positives = 41/77 (53%)

Query:    50 ILSKEVKSTT-VVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYE 108
             + +  V+ TT  +G NI KEG D  + PDSEYP+WL+ +    P   +L+  + ET  Y 
Sbjct:    61 VCTDPVQLTTHPMGVNIYKEGQDVVLKPDSEYPEWLFQMNVGPP--KKLEELDPETREYW 118

Query:   109 DLKRFLKLDNRAKIKEN 125
              L R   +    ++ +N
Sbjct:   119 RLLRKHNIWRHNRLSKN 135

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00012085 hypothetical protein (131 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
pfam08561	80	pfam08561, Ribosomal_L37, Mitochondrial ribosomal	9e-26

>gnl|CDD|219904 pfam08561, Ribosomal_L37, Mitochondrial ribosomal protein L37

 Score = 92.0 bits (229), Expect = 9e-26
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 47  KASILSKEVKSTTVVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLP 106
                S     T + G NI K G DP  LPDSEYP+WLW LL+  P   EL   N     
Sbjct: 1   AKVETSSCPAGTVLNGLNIFKTGPDPVALPDSEYPEWLWTLLDPAPKALELADAN----- 55

Query: 107 YEDLKRFLKLDNRAKIKENNSVKAK 131
            +D +++ +L  +  IKENN +   
Sbjct: 56  LKDRRKYWRLLRKQNIKENNFLSKL 80

This family includes yeast MRPL37 a mitochondrial ribosomal protein. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
PF08561	85	Ribosomal_L37: Mitochondrial ribosomal protein L37	99.97
KOG3435	127	consensus Mitochondrial/chloroplast ribosomal prot	99.97
KOG3435	127	consensus Mitochondrial/chloroplast ribosomal prot	92.9

>PF08561 Ribosomal_L37: Mitochondrial ribosomal protein L37; InterPro: IPR013870 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.97  E-value=8.2e-33  Score=194.81  Aligned_cols=82  Identities=46%  Similarity=0.793  Sum_probs=74.7

Q ss_pred             cccccccccccc-ccceecccCCCCccCCCCCCchhhhhccCCccchHHHhhcCCCCCCHHHHHHHHhHHHHHHHHhccc
Q 032859           49 SILSKEVKSTTV-VGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRAKIKENNS  127 (132)
Q Consensus        49 ~~v~~~~~~~~~-~g~Ni~K~g~dp~~~~D~eYP~WLw~lld~~~~l~~l~~~~~e~l~~~~~kR~lkl~nR~kIK~nN~  127 (132)
                      +++.|+|+++|+ +|+||+|+|+||+|+||+|||+|||+|+|+.+...++...+.+..++++.+||+|++||++||+|||
T Consensus         2 ~~~~ss~~~gt~l~GlNi~K~g~DP~al~D~EYP~WLW~lld~~~~~~~~~~~~~~~~~~~~~~r~~r~~rr~~IK~~N~   81 (85)
T PF08561_consen    2 PVETSSCPAGTVLKGLNILKDGKDPVALPDSEYPEWLWTLLDPKPKKSELKDPDEEGATRKERRRYLRKERRQKIKENNF   81 (85)
T ss_pred             CcCCCcccccceeeeeeeecCCCCCccCCcchhhHHHHHhcCCccccccccccchhhhhHHHHHHHHHHHHHHHHHHHhH
Confidence            356688887665 7999999999999999999999999999999988888777778889999999999999999999999


Q ss_pred             ccc
Q 032859          128 VKA  130 (132)
Q Consensus       128 lka  130 (132)
                      |++
T Consensus        82 l~~   84 (85)
T PF08561_consen   82 LKK   84 (85)
T ss_pred             hhc
Confidence            986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry includes yeast MRPL37 a mitochondrial ribosomal protein [].

>KOG3435 consensus Mitochondrial/chloroplast ribosomal protein L54/L37 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=6.4e-32  Score=202.98  Aligned_cols=113  Identities=58%  Similarity=0.833  Sum_probs=103.7

Q ss_pred             hchhhhhhhhhcccccccCCCC-CCCCCCcccccccccccc-ccccceecccCCCCccCCCCCCchhhhhccCCccchHH
Q 032859           19 VGKVGQRTFAAGASKAKKGGKG-AASDAPKASILSKEVKST-TVVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSE   96 (132)
Q Consensus        19 ~~~~~~R~yA~~~~k~kkg~Kg-~~~~a~k~~~v~~~~~~~-~~~g~Ni~K~g~dp~~~~D~eYP~WLw~lld~~~~l~~   96 (132)
                      ...+++|+||..+++.++.|+| +..+.++.+++.++|+.+ |+||.||+|+|.||+||||+|||+|||+++|.+|.+.|
T Consensus        13 ~~~~~~rt~a~~a~kask~g~~~~~~~~~kvs~~~~~~ks~~tv~~~n~~k~g~d~kiLPdseyPdwLw~l~~~~pv~~e   92 (127)
T KOG3435|consen   13 QFSVYARTLAARASKASKSGKGGGSYDKPKVSVETDAIKSDATVCGANYLKDGHDPKILPDSEYPDWLWKLLDKDPVLLE   92 (127)
T ss_pred             HHHHHHhcccchhhhhhhccccCCccccCcccccccccccchhhHHHHHhhcCCCCccCCCCcCcchhHhhCCCCcccHH
Confidence            3567889999877899999988 777888888888899976 99999999999999999999999999999999999998


Q ss_pred             HhhcCCCCCCHHHHHHHHhHHHHHHHHhccccccc
Q 032859           97 LKMKNIETLPYEDLKRFLKLDNRAKIKENNSVKAK  131 (132)
Q Consensus        97 l~~~~~e~l~~~~~kR~lkl~nR~kIK~nN~lkak  131 (132)
                      ..+.+.++..+++++|++++.+|.+||+||||++|
T Consensus        93 ~~e~~~~~~~~~~~kr~~kla~r~rikqnn~l~kk  127 (127)
T KOG3435|consen   93 DLEKPEETWLYDDLKRFRKLATRSRIKQNNFLKKK  127 (127)
T ss_pred             hccCcccchhhHhHHHHHHHHHHHHHHhcchhhcC
Confidence            88888899999999999999999999999999986

>KOG3435 consensus Mitochondrial/chloroplast ribosomal protein L54/L37 [Translation, ribosomal structure and biogenesis]

Probab=92.90  E-value=0.031  Score=42.71  Aligned_cols=28  Identities=25%  Similarity=0.247  Sum_probs=23.0

Q ss_pred             cceecccCCCCccCCCCCCchhhhhccC
Q 032859           62 GANILKEGSDPKVLPDSEYPDWLWHLLE   89 (132)
Q Consensus        62 g~Ni~K~g~dp~~~~D~eYP~WLw~lld   89 (132)
                      +.-+.-.+.||++++|.|||+|+|.+.|
T Consensus        78 dwLw~l~~~~pv~~e~~e~~~~~~~~~~  105 (127)
T KOG3435|consen   78 DWLWKLLDKDPVLLEDLEKPEETWLYDD  105 (127)
T ss_pred             chhHhhCCCCcccHHhccCcccchhhHh
Confidence            3444447899999999999999999873

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00