Citrus Sinensis ID: 032868

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICGGSIDSFSKT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccEEEEccHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEcccccHHcccccccccccccccccccccccHHHccccccccEEEEccccccHHHHHHccccccccccccccHHHHHHHHHccccEEEEccHHHHHcccccccEEcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MEATSLISLssfaagasslppvlcphgnnrrgllSLTVdqqrcdnigfisskilsfcpkaslrgnleavgvptsvPVRVAHELLQAGhryldvrtpeefsaghatgainvpymddkepeicggsidsfskt
Flexible Loop (DISEMBL)
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEicggsidsfskt
Low Complexity Region (SEG)
MEATslislssfaagasslPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICGGSIDSFSKT
Disordered region (IsUnstruct)
********************PVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM******************
Disordered Region (DISOPRED)
*********SSF**G********************************FISSKILSFCP***************SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG*********
Disordered Region (DISEMBL)
********LSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICGGSIDSFSKT
Disordered Region (DISPRO)
*******************PPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEIC**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICGGSIDSFSKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q38853	182	Rhodanese-like domain-con	yes	no	0.786	0.565	0.462	1e-17
Q39129	120	Thiosulfate sulfurtransfe	no	no	0.335	0.366	0.818	8e-15
P27626	183	Senescence-associated pro	N/A	no	0.320	0.229	0.761	1e-12
Q9FKW8	136	Thiosulfate sulfurtransfe	no	no	0.305	0.294	0.571	2e-06
Q8RUD6	169	Rhodanese-like domain-con	no	no	0.305	0.236	0.55	2e-06
A1S1Z4	367	tRNA 2-selenouridine synt	no	no	0.381	0.136	0.4	0.0007

>sp|Q38853|STR15_ARATH Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 70/121 (57%), Gaps = 18/121 (14%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHGN------NRRGLLSLTVDQQRCDNIGFISSKIL 54
           ME T+  + S     +S++ P L   G+       RRG++   V   R  N  +  +   
Sbjct: 1   METTAFNTTSRIGNWSSAISPPLQTCGSFKCQLPTRRGVI---VADLRNSNFRWRKATTT 57

Query: 55  SFCPKASLRGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
           S       RGN+  EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPY
Sbjct: 58  S-------RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPY 110

Query: 113 M 113
           M
Sbjct: 111 M 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q39129|STR16_ARATH Thiosulfate sulfurtransferase 16, chloroplastic OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 39/44 (88%)

Query: 71  VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMD 114
           VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM+
Sbjct: 7   VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMN 50

Thought to act during the early stages of leaf senescence. Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/42 (76%), Positives = 37/42 (88%)

Query: 72  PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
           PTSVPVRVA EL QAG+++LDVRTP+EFS GH + AINVPYM
Sbjct: 71  PTSVPVRVARELAQAGYKHLDVRTPDEFSIGHPSRAINVPYM 112

Is thought to act during the early stages of leaf senescence.

Raphanus sativus (taxid: 3726)

>sp|Q9FKW8|STR18_ARATH Thiosulfate sulfurtransferase 18 OS=Arabidopsis thaliana GN=STR18 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 2/42 (4%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYM 113
           SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM
Sbjct: 16  SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYM 57

Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8RUD6|STR19_ARATH Rhodanese-like domain-containing protein 19, mitochondrial OS=Arabidopsis thaliana GN=STR19 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 26/40 (65%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
           +V V  A   L  GHRYLDVRT EEF+  H   A+N+PYM
Sbjct: 43  TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYM 82

Arabidopsis thaliana (taxid: 3702)

>sp|A1S1Z4|SELU_SHEAM tRNA 2-selenouridine synthase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=selU PE=3 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 73  TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
            +VP +   E+   GH  +DVR P EFS G    A+N+P M D E +  G
Sbjct: 4   NTVPAKQYREIFLKGHPIMDVRAPIEFSKGAFPNAVNLPLMTDSERQKVG 53

Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA.

Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) (taxid: 326297)

EC: 2

EC: .

EC: 9

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
255579783	182	Senescence-associated protein DIN1, puta	0.839	0.604	0.657	2e-28
224133954	180	predicted protein [Populus trichocarpa]	0.824	0.6	0.605	9e-28
359497218	177	PREDICTED: senescence-associated protein	0.610	0.451	0.658	5e-22
351728052	186	uncharacterized protein LOC100305968 [Gl	0.496	0.349	0.738	1e-19
351726216	185	uncharacterized protein LOC100499831 [Gl	0.496	0.351	0.738	7e-19
449434108	184	PREDICTED: rhodanese-like domain-contain	0.702	0.5	0.593	2e-18
388501622	179	unknown [Lotus japonicus]	0.496	0.363	0.696	4e-18
357483967	185	Senescence-associated protein DIN1 [Medi	0.496	0.351	0.696	9e-18
7340289	150	OP1 [Cucumis sativus]	0.603	0.526	0.604	1e-17
357483969	108	Senescence-associated protein DIN1 [Medi	0.396	0.481	0.830	5e-17

>gi|255579783|ref|XP_002530729.1| Senescence-associated protein DIN1, putative [Ricinus communis] gi|223529693|gb|EEF31635.1| Senescence-associated protein DIN1, putative [Ricinus communis]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 87/114 (76%), Gaps = 4/114 (3%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLT-VDQQRCDNIGFISSKILSFCPK 59
           MEA S++S ++F +  +SL P  CP   N R LL L  ++  R  +IG I+ K +SFCPK
Sbjct: 1   MEAKSIVSSATFTS--TSLCPSFCPSNLNNRKLLLLPLINNPRRLSIG-INQKSVSFCPK 57

Query: 60  ASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
           A LRGNLEAVGVPTSVPVRVAHELL AGHRYLDVRTPEEFSAGH  GAIN+PYM
Sbjct: 58  AGLRGNLEAVGVPTSVPVRVAHELLLAGHRYLDVRTPEEFSAGHVVGAINIPYM 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133954|ref|XP_002327720.1| predicted protein [Populus trichocarpa] gi|222836805|gb|EEE75198.1| predicted protein [Populus trichocarpa]

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 69/114 (60%), Positives = 85/114 (74%), Gaps = 6/114 (5%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHG-NNRRGLLSLTVDQQRCDNIGFISSKILSFCPK 59
           M A +++   S +  +++L PVLCP   N RRG+ +  V+ +RC +I  I+ K LSF PK
Sbjct: 1   MAAKAVVCYGS-STSSTTLRPVLCPQQLNKRRGVFA--VNSRRC-SIN-INHKSLSFRPK 55

Query: 60  ASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
            SLR NLEA G+PTSVPVRVAHEL QAGHRYLDVRTP+EFS GHA GAIN+PYM
Sbjct: 56  TSLRWNLEATGIPTSVPVRVAHELHQAGHRYLDVRTPDEFSTGHAAGAINIPYM 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497218|ref|XP_002271073.2| PREDICTED: senescence-associated protein DIN1-like [Vitis vinifera] gi|296088206|emb|CBI35721.3| unnamed protein product [Vitis vinifera]

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 61/85 (71%), Gaps = 5/85 (5%)

Query: 29  NRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGH 88
           N R L  L  + QRC     +      FC   + RGNLE+ GVPTSVPVRVA ELLQAGH
Sbjct: 27  NFRCLSPLKANPQRC-----VVGGTKRFCRVVAARGNLESTGVPTSVPVRVALELLQAGH 81

Query: 89  RYLDVRTPEEFSAGHATGAINVPYM 113
           RYLDVRTPEEFSAGHA+GAINVPYM
Sbjct: 82  RYLDVRTPEEFSAGHASGAINVPYM 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728052|ref|NP_001235646.1| uncharacterized protein LOC100305968 [Glycine max] gi|255627141|gb|ACU13915.1| unknown [Glycine max]

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 55/65 (84%)

Query: 49  ISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAI 108
           +  K  +F  +ASL+GNLEA+ VPTSVPVRVA+ELL AGHRYLDVRTPEEF AGHA GAI
Sbjct: 51  VPPKFPNFRREASLQGNLEAIRVPTSVPVRVAYELLLAGHRYLDVRTPEEFDAGHAPGAI 110

Query: 109 NVPYM 113
           N+PYM
Sbjct: 111 NIPYM 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726216|ref|NP_001236607.1| uncharacterized protein LOC100499831 [Glycine max] gi|255626991|gb|ACU13840.1| unknown [Glycine max]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 55/65 (84%)

Query: 49  ISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAI 108
           +  K  SF  +A+L+GNLEAV VPTSVPVRVA+ELL AGHRYLDV TPEEF+AGHA GAI
Sbjct: 50  VPPKFPSFRREAALQGNLEAVRVPTSVPVRVAYELLLAGHRYLDVGTPEEFNAGHAPGAI 109

Query: 109 NVPYM 113
           N+PYM
Sbjct: 110 NIPYM 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434108|ref|XP_004134838.1| PREDICTED: rhodanese-like domain-containing protein 15, chloroplastic-like [Cucumis sativus] gi|449491287|ref|XP_004158850.1| PREDICTED: rhodanese-like domain-containing protein 15, chloroplastic-like [Cucumis sativus]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 62/96 (64%), Gaps = 4/96 (4%)

Query: 22  VLCPHGNN--RRGLL--SLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPV 77
           +L P+ NN   RG L   +T   QR      IS K  S    A LR  LEA  VPTSVPV
Sbjct: 18  LLLPNTNNLTSRGRLLPMITGSLQRRRRDSAISYKHWSTSRNAVLREELEATAVPTSVPV 77

Query: 78  RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
           RVA ELLQAG RYLDVRTPEE+S GHA GAIN+PYM
Sbjct: 78  RVALELLQAGQRYLDVRTPEEYSVGHAPGAINIPYM 113

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501622|gb|AFK38877.1| unknown [Lotus japonicus]

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 53/66 (80%), Gaps = 1/66 (1%)

Query: 49  ISSKILSFCPKASLRGNLEAVGV-PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA 107
           +  K  +F  + ++  NLEAVGV PTSVPVRVAHELL AGH+YLDVRTPEEF AGHA GA
Sbjct: 43  VQPKFQTFRVEGAMNQNLEAVGVVPTSVPVRVAHELLLAGHKYLDVRTPEEFDAGHAPGA 102

Query: 108 INVPYM 113
           IN+PYM
Sbjct: 103 INIPYM 108

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483967|ref|XP_003612270.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|217071246|gb|ACJ83983.1| unknown [Medicago truncatula] gi|355513605|gb|AES95228.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|388495624|gb|AFK35878.1| unknown [Medicago truncatula]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 52/66 (78%), Gaps = 1/66 (1%)

Query: 49  ISSKILSFCPKASLRGNLE-AVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA 107
           +  K  +F     L+GNLE  VGVPTSVPVRVAHELL AGH+YLDVRT EEF+AGHA GA
Sbjct: 49  VQPKFSNFRTMCGLKGNLEEVVGVPTSVPVRVAHELLLAGHKYLDVRTTEEFNAGHAPGA 108

Query: 108 INVPYM 113
           IN+PYM
Sbjct: 109 INIPYM 114

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7340289|gb|AAF61174.1|AF245222_1 OP1 [Cucumis sativus]

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 59/81 (72%), Gaps = 2/81 (2%)

Query: 33  LLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLD 92
           +++ ++ ++R D+   IS K  S    A LR  LEA  VPTSVPVRVA ELLQAG RYLD
Sbjct: 1   MITGSLQRRRRDSA--ISYKHWSTSRNAVLREELEATAVPTSVPVRVALELLQAGQRYLD 58

Query: 93  VRTPEEFSAGHATGAINVPYM 113
           VRTPEE+S GHA GAIN+PYM
Sbjct: 59  VRTPEEYSVGHAPGAINIPYM 79

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483969|ref|XP_003612271.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|355513606|gb|AES95229.1| Senescence-associated protein DIN1 [Medicago truncatula]

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 48/53 (90%), Gaps = 1/53 (1%)

Query: 62  LRGNLE-AVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
           L+GNLE  VGVPTSVPVRVAHELL AGH+YLDVRT EEF+AGHA GAIN+PYM
Sbjct: 4   LKGNLEEVVGVPTSVPVRVAHELLLAGHKYLDVRTTEEFNAGHAPGAINIPYM 56

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
TAIR|locus:2128038	182	SEN1 "AT4G35770" [Arabidopsis	0.389	0.280	0.773	2.9e-16
UNIPROTKB|B2C7Y6	185	NRIP1 "Chloroplast N receptor-	0.549	0.389	0.602	6e-16
TAIR|locus:2156937	120	STR16 "AT5G66040" [Arabidopsis	0.335	0.366	0.818	1.1e-14
TAIR|locus:2156882	138	STR18 "AT5G66170" [Arabidopsis	0.396	0.376	0.490	2.3e-07
TAIR|locus:505006261	169	AT2G21045 [Arabidopsis thalian	0.305	0.236	0.55	6.1e-07
UNIPROTKB|Q8ECN1	132	SO_3105 "Periplasmic rhodanese	0.267	0.265	0.542	5.5e-06
TIGR_CMR|SO_3105	132	SO_3105 "phage shock protein E	0.267	0.265	0.542	5.5e-06
UNIPROTKB|Q8E992	108	SO_4394 "Cytoplasmic rhodanese	0.229	0.277	0.566	6.3e-05
TIGR_CMR|SO_4394	108	SO_4394 "phage shock protein E	0.229	0.277	0.566	6.3e-05
TAIR|locus:2827795	156	AT2G17850 "AT2G17850" [Arabido	0.526	0.442	0.342	6.3e-05

TAIR|locus:2128038 SEN1 "AT4G35770" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 41/53 (77%), Positives = 45/53 (84%)

Query:    63 RGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
             RGN+  EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPYM
Sbjct:    59 RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPYM 111

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=IEP;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

UNIPROTKB|B2C7Y6 NRIP1 "Chloroplast N receptor-interacting protein 1" [Nicotiana benthamiana (taxid:4100)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 44/73 (60%), Positives = 52/73 (71%)

Query:    41 QRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFS 100
             Q+  N G  S++   F   A++   ++   VPTSVPVRVA ELLQAGHRYLDVRT EEFS
Sbjct:    43 QKRRNFGN-SNRTPGFSWMATVGEKVQVSTVPTSVPVRVALELLQAGHRYLDVRTAEEFS 101

Query:   101 AGHATGAINVPYM 113
              GHA GAIN+PYM
Sbjct:   102 DGHAPGAINIPYM 114

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2156937 STR16 "AT5G66040" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 36/44 (81%), Positives = 39/44 (88%)

Query:    71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMD 114
             VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM+
Sbjct:     7 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMN 50

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TAIR|locus:2156882 STR18 "AT5G66170" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 27/55 (49%), Positives = 35/55 (63%)

Query:    61 SLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYM 113
             S+  + +A  V  SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM
Sbjct:     4 SISSSTKAEEV-VSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYM 57

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:505006261 AT2G21045 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 22/40 (55%), Positives = 26/40 (65%)

Query:    74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
             +V V  A   L  GHRYLDVRT EEF+  H   A+N+PYM
Sbjct:    43 TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYM 82

GO:0005737 "cytoplasm" evidence=ISM

GO:0007568 "aging" evidence=ISS;TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

UNIPROTKB|Q8ECN1 SO_3105 "Periplasmic rhodanese domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 19/35 (54%), Positives = 26/35 (74%)

Query:    78 RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
             +VA E + +G   LDVRTPEEF+AGH   A+N+P+
Sbjct:    38 QVAWEKIASGAMVLDVRTPEEFAAGHLVNAVNIPF 72

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|SO_3105 SO_3105 "phage shock protein E" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 19/35 (54%), Positives = 26/35 (74%)

Query:    78 RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
             +VA E + +G   LDVRTPEEF+AGH   A+N+P+
Sbjct:    38 QVAWEKIASGAMVLDVRTPEEFAAGHLVNAVNIPF 72

GO:0003674 "molecular_function" evidence=ND

GO:0009271 "phage shock" evidence=ISS

UNIPROTKB|Q8E992 SO_4394 "Cytoplasmic rhodanese domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 17/30 (56%), Positives = 24/30 (80%)

Query:    82 ELLQAGHRYLDVRTPEEFSAGHATGAINVP 111
             +L++ G R +DVR+PEEF++GH   AINVP
Sbjct:    20 QLIEQGARVIDVRSPEEFASGHLPQAINVP 49

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|SO_4394 SO_4394 "phage shock protein E" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 17/30 (56%), Positives = 24/30 (80%)

Query:    82 ELLQAGHRYLDVRTPEEFSAGHATGAINVP 111
             +L++ G R +DVR+PEEF++GH   AINVP
Sbjct:    20 QLIEQGARVIDVRSPEEFASGHLPQAINVP 49

GO:0003674 "molecular_function" evidence=ND

GO:0009271 "phage shock" evidence=ISS

TAIR|locus:2827795 AT2G17850 "AT2G17850" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query:    44 DNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRV--AHELLQAGHRYLDVRTPEEFSA 101
             D++  + S +L F     L     ++  P  + + V  A +LL +G+ +LDVRT EEF  
Sbjct:     2 DSLHVLRSFLLLFIVFNHLPRTTTSMSEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKK 61

Query:   102 GH--ATGAINVPY 112
             GH  +    NVPY
Sbjct:    62 GHVDSENVFNVPY 74

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	131
PLN02160	136	PLN02160, PLN02160, thiosulfate sulfurtransferase	6e-09
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	4e-08
PRK11784	345	PRK11784, PRK11784, tRNA 2-selenouridine synthase;	2e-07
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	1e-06
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	1e-06
TIGR03167	311	TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine s	2e-06
cd01520	128	cd01520, RHOD_YbbB, Member of the Rhodanese Homolo	3e-06
cd01524	90	cd01524, RHOD_Pyr_redox, Member of the Rhodanese H	5e-05
PRK10287	104	PRK10287, PRK10287, thiosulfate:cyanide sulfurtran	1e-04
cd01534	95	cd01534, 4RHOD_Repeat_3, Member of the Rhodanese H	2e-04
TIGR02981	101	TIGR02981, phageshock_pspE, phage shock operon rho	5e-04
cd01519	106	cd01519, RHOD_HSP67B2, Member of the Rhodanese Hom	0.001
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	0.001
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	0.002
COG2897	285	COG2897, SseA, Rhodanese-related sulfurtransferase	0.002
PRK00162	108	PRK00162, glpE, thiosulfate sulfurtransferase; Val	0.003
cd01526	122	cd01526, RHOD_ThiF, Member of the Rhodanese Homolo	0.004

>gnl|CDD|177819 PLN02160, PLN02160, thiosulfate sulfurtransferase

 Score = 50.5 bits (120), Expect = 6e-09
 Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 2/42 (4%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYM 113
           SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM
Sbjct: 16  SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYM 57

Length = 136

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 46.9 bits (112), Expect = 4e-08
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 80  AHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117
             ELL       LDVR PEE++AGH  GAIN+P  + +E
Sbjct: 2   LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEE 40

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|236982 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 82  ELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117
            L       +DVR+P EF+ GH  GAIN+P ++D+E
Sbjct: 10  ALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEE 45

Length = 345

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPE 119
                 LDVR+PEE+  GH  GA+N+P  +  +  
Sbjct: 2   DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRR 36

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMDDKEPEI 120
           +DVR+PEE++ GH  GA+N+P       ++
Sbjct: 17  IDVRSPEEYAKGHIPGAVNIPLSLPSLDKL 46

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
           +DVR+P EF+ GH  GAIN+P ++D+E    G
Sbjct: 6   IDVRSPAEFAEGHLPGAINLPLLNDEERAEVG 37

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene [Protein synthesis, tRNA and rRNA base modification]. Length = 311

>gnl|CDD|238778 cd01520, RHOD_YbbB, Member of the Rhodanese Homology Domain superfamily

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 82  ELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
            L +A    +DVR+P+EF  GH  GAIN+P +DD+E  + G
Sbjct: 8   ALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVG 48

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB. Length = 128

>gnl|CDD|238782 cd01524, RHOD_Pyr_redox, Member of the Rhodanese Homology Domain superfamily

 Score = 39.2 bits (92), Expect = 5e-05
 Identities = 14/21 (66%), Positives = 17/21 (80%)

Query: 91  LDVRTPEEFSAGHATGAINVP 111
           +DVRTP+EF  GH  GAIN+P
Sbjct: 17  IDVRTPQEFEKGHIKGAINIP 37

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. Length = 90

>gnl|CDD|182356 PRK10287, PRK10287, thiosulfate:cyanide sulfurtransferase; Provisional

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 62  LRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117
            +  L A+ +  S+P       + A   ++DVR PE++   H  GAIN+P  + KE
Sbjct: 2   FKKGLLALALVFSLP-------VFAAEHWIDVRVPEQYQQEHVQGAINIPLKEVKE 50

Length = 104

>gnl|CDD|238792 cd01534, 4RHOD_Repeat_3, Member of the Rhodanese Homology Domain superfamily, repeat 3

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 91  LDVRTPEEFSAGHATGAINVP 111
            DVRTPEE+ AGH  G  + P
Sbjct: 20  FDVRTPEEYEAGHLPGFRHTP 40

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue. Length = 95

>gnl|CDD|132026 TIGR02981, phageshock_pspE, phage shock operon rhodanese PspE

 Score = 36.5 bits (84), Expect = 5e-04
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 84  LQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117
           L A   ++DVR PE++   H  GAIN+P  + KE
Sbjct: 15  LFAAEHWIDVRIPEQYQQEHIQGAINIPLKEIKE 48

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely. Length = 101

>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain superfamily

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 92  DVRTPEEFSAGHATGAINVPYMDDKEPEICGGSIDSFSKT 131
           DVR PEE   G   GAIN+P      P+    S + F K 
Sbjct: 20  DVREPEELKTGKIPGAINIPL--SSLPDALALSEEEFEKK 57

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. Length = 106

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 17/60 (28%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 73  TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATG-AINVPYMDDKEPEICGGSIDSFSKT 131
           T      A  L       LDVR PEE+  GH  G AIN+P    +               
Sbjct: 6   TISEDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIP--LSELKAAENLLELPDDDP 63

Length = 110

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 80  AHELLQAGHRYLDVRTPEEFSAGHATGAINVP 111
           A      G   +DVR   E ++G A GA+ +P
Sbjct: 10  ARARAAQGAVLIDVREAHERASGQAEGALRIP 41

Length = 376

>gnl|CDD|225450 COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 10/34 (29%)

Query: 91  LDVRTPEEFS----------AGHATGAINVPYMD 114
           +D R+PE F           AGH  GAIN+P+ D
Sbjct: 175 IDARSPERFRGKEPEPRDGKAGHIPGAINIPWTD 208

Length = 285

>gnl|CDD|178908 PRK00162, glpE, thiosulfate sulfurtransferase; Validated

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 75  VPVRVAHELL-QAGHRYLDVRTPEEFSAGHATGA 107
           + V  AH+ L + G   +D+R P+ F+ GHA GA
Sbjct: 7   INVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGA 40

Length = 108

>gnl|CDD|238784 cd01526, RHOD_ThiF, Member of the Rhodanese Homology Domain superfamily

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 82  ELLQAG--HRYLDVRTPEEFSAGHATGAINVP 111
            +LQAG  H  LDVR    F       AIN+P
Sbjct: 17  NILQAGKKHVLLDVRPKVHFEICRLPEAINIP 48

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.08
PRK07411	390	hypothetical protein; Validated	99.06
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.03
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.02
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.01
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	98.99
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	98.99
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	98.97
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	98.96
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	98.9
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	98.87
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	98.84
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	98.83
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	98.83
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	98.8
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	98.8
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	98.8
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	98.76
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	98.75
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	98.74
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	98.73
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	98.71
PLN02160	136	thiosulfate sulfurtransferase	98.71
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	98.69
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	98.69
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	98.69
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	98.69
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	98.68
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	98.62
PRK05320	257	rhodanese superfamily protein; Provisional	98.58
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	98.52
PRK01415	247	hypothetical protein; Validated	98.51
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	98.45
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	98.45
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	98.42
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	98.41
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	98.39
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	98.37
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	98.29
PLN02723	320	3-mercaptopyruvate sulfurtransferase	98.26
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	98.25
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	98.23
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	98.23
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	98.22
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	98.2
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	98.2
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	98.11
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	98.1
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	98.09
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	98.01
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	97.9
PLN02723	320	3-mercaptopyruvate sulfurtransferase	97.89
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	97.82
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	97.79
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	97.58
COG1054	308	Predicted sulfurtransferase [General function pred	96.9
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	96.29
COG2603	334	Predicted ATPase [General function prediction only	96.23
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.84
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	93.63
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	93.62
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	91.91

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.08  E-value=2e-10  Score=96.60  Aligned_cols=80  Identities=18%  Similarity=0.269  Sum_probs=64.0

Q ss_pred             eeecccCCCcccccccccccccchhhhccccCcc-cccCCCCccCHHHHHHHHhCC--CEEEeeCChhhhhcCCCCCcee
Q 032868           33 LLSLTVDQQRCDNIGFISSKILSFCPKASLRGNL-EAVGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAIN  109 (131)
Q Consensus        33 ~l~l~~~P~r~~i~~~~~~~~~~~~~~c~~~~~~-~~~~~~~~Is~~el~~l~~~~--~~LIDVRep~E~~~ghIpgAi~  109 (131)
                      .++++++|+|+.+..     +.+|+.+|+..... ........|+++++.++++++  .++||||+++||+.+|||||+|
T Consensus       251 ~~~~~~~~~C~~~~~-----~~~~~~~c~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAin  325 (392)
T PRK07878        251 TIKIRKDPSTPKITE-----LIDYEAFCGVVSDEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQL  325 (392)
T ss_pred             eEeeccCCCCCcccc-----cccchhhcccccccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEE
Confidence            478889999987766     56789999875322 122345689999999998653  6899999999999999999999


Q ss_pred             eCCCCCCC
Q 032868          110 VPYMDDKE  117 (131)
Q Consensus       110 IPl~~i~~  117 (131)
                      +|+..+..
T Consensus       326 ip~~~l~~  333 (392)
T PRK07878        326 IPKSEILS  333 (392)
T ss_pred             cChHHhcc
Confidence            99987754

>PRK07411 hypothetical protein; Validated

Probab=99.06  E-value=2.2e-10  Score=96.35  Aligned_cols=80  Identities=19%  Similarity=0.254  Sum_probs=64.3

Q ss_pred             eeecccCCCcccccccccccccchhhhccccCcc----cccCCCCccCHHHHHHHHhC---CCEEEeeCChhhhhcCCCC
Q 032868           33 LLSLTVDQQRCDNIGFISSKILSFCPKASLRGNL----EAVGVPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHAT  105 (131)
Q Consensus        33 ~l~l~~~P~r~~i~~~~~~~~~~~~~~c~~~~~~----~~~~~~~~Is~~el~~l~~~---~~~LIDVRep~E~~~ghIp  105 (131)
                      .++++++|.|+.+..     +..|..+|+.....    ........|+++++.++++.   +.++||||+++||+.||||
T Consensus       243 ~~~~~~~~~c~~i~~-----~~~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIp  317 (390)
T PRK07411        243 ELKLRPNPERPVIEK-----LIDYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIP  317 (390)
T ss_pred             EEeccCCCCCCcccc-----ccchhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCC
Confidence            568889999887766     56799999875322    12345678999999999864   3689999999999999999


Q ss_pred             CceeeCCCCCCC
Q 032868          106 GAINVPYMDDKE  117 (131)
Q Consensus       106 gAi~IPl~~i~~  117 (131)
                      ||+|||+.++..
T Consensus       318 GAiniP~~~l~~  329 (390)
T PRK07411        318 GSVLVPLPDIEN  329 (390)
T ss_pred             CCEEccHHHhhc
Confidence            999999987754

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.03  E-value=2.4e-10  Score=83.63  Aligned_cols=58  Identities=41%  Similarity=0.576  Sum_probs=49.0

Q ss_pred             CCCccCHHHHHHHHhCC-CEEEeeCChhhhhcCCCCCceeeCCCCCCCCcccCCCchhhcc
Q 032868           71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICGGSIDSFSK  130 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~~-~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~~~~~~~~~~f~~  130 (131)
                      .+..++.++++.+++.+ .++||||+|+||..||+|.++|||++......+  ....||.+
T Consensus        21 ~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~--l~~~eF~k   79 (136)
T KOG1530|consen   21 NPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGA--LKNPEFLK   79 (136)
T ss_pred             CcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccc--cCCHHHHH
Confidence            45679999999999776 999999999999999999999999986554444  66778865

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.02  E-value=3.8e-10  Score=80.72  Aligned_cols=42  Identities=40%  Similarity=0.683  Sum_probs=38.0

Q ss_pred             cCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        75 Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      |++++++++++++.+|||||+++||..||||||+|||+..+.
T Consensus         1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~   42 (128)
T cd01520           1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDE   42 (128)
T ss_pred             CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChh
Confidence            688999999887789999999999999999999999997654

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.01  E-value=2.1e-10  Score=78.25  Aligned_cols=44  Identities=32%  Similarity=0.347  Sum_probs=39.0

Q ss_pred             ccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           74 SVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        74 ~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      .|+++++.+++++ +.++||||++.||+.||||||+|||++.+.+
T Consensus         3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~   47 (101)
T cd01518           3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFRE   47 (101)
T ss_pred             cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhH
Confidence            5889999998865 4789999999999999999999999987653

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=98.99  E-value=2.6e-10  Score=77.18  Aligned_cols=43  Identities=30%  Similarity=0.372  Sum_probs=36.8

Q ss_pred             cCHHHHHHHHhCC---CEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        75 Is~~el~~l~~~~---~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      |+++++.+++..+   +++||||+++||+.||||||+|+|+..+..
T Consensus         1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~   46 (95)
T cd01534           1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQ   46 (95)
T ss_pred             CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHH
Confidence            5788999988643   679999999999999999999999876543

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=98.99  E-value=5e-10  Score=76.16  Aligned_cols=43  Identities=26%  Similarity=0.245  Sum_probs=37.7

Q ss_pred             cCHHHHHHHHhC--CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           75 VPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        75 Is~~el~~l~~~--~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      |+++++.+++++  +.+|||||+++||+.||||||+|+|+..+..
T Consensus         1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~   45 (100)
T cd01523           1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYF   45 (100)
T ss_pred             CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchH
Confidence            578899998865  3789999999999999999999999987643

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=98.97  E-value=8e-10  Score=74.90  Aligned_cols=46  Identities=30%  Similarity=0.434  Sum_probs=41.2

Q ss_pred             CccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        73 ~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ..|+++++.++++.+..|||||+++||..+|||||+|+|+..+...
T Consensus         2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~   47 (99)
T cd01527           2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLSQLESE   47 (99)
T ss_pred             CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChhHhccc
Confidence            4689999999987778999999999999999999999999887653

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=98.96  E-value=5.6e-10  Score=77.27  Aligned_cols=48  Identities=21%  Similarity=0.165  Sum_probs=41.0

Q ss_pred             CCCCccCHHHHHHHHhCC--CEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           70 GVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        70 ~~~~~Is~~el~~l~~~~--~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ...+.++++++.++++.+  .+|||||++.||..||||||+|||++++..
T Consensus         7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~   56 (109)
T cd01533           7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVL   56 (109)
T ss_pred             ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHH
Confidence            345679999999998643  689999999999999999999999977643

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=98.90  E-value=1.1e-09  Score=74.61  Aligned_cols=42  Identities=29%  Similarity=0.507  Sum_probs=37.0

Q ss_pred             cCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        75 Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      |++++++++++.   +++|||||++.||..||||||+|+|+..+.
T Consensus         1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~   45 (105)
T cd01525           1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVF   45 (105)
T ss_pred             CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhc
Confidence            578999999864   378999999999999999999999987654

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=98.87  E-value=1.7e-09  Score=73.78  Aligned_cols=42  Identities=31%  Similarity=0.520  Sum_probs=36.5

Q ss_pred             CHHHHHHHHh-C-CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           76 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        76 s~~el~~l~~-~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      +++++.++++ + +.+|||||++.||..||||||+|+|+..+.+
T Consensus         2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~   45 (106)
T cd01519           2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPD   45 (106)
T ss_pred             cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhh
Confidence            5778888886 4 4899999999999999999999999987654

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=98.84  E-value=2.3e-09  Score=74.82  Aligned_cols=44  Identities=23%  Similarity=0.402  Sum_probs=38.3

Q ss_pred             CccCHHHHHHHHhCC-------CEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           73 TSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        73 ~~Is~~el~~l~~~~-------~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ..|++++++++++++       .++||||++ ||..||||||+|+|+..+.+
T Consensus         2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~   52 (113)
T cd01443           2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQ   52 (113)
T ss_pred             cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHH
Confidence            458999999998653       689999999 99999999999999977653

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=98.83  E-value=2.8e-09  Score=75.47  Aligned_cols=46  Identities=33%  Similarity=0.396  Sum_probs=40.3

Q ss_pred             CCccCHHHHHHHHhC--CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           72 PTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        72 ~~~Is~~el~~l~~~--~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ...|+++++.++++.  +.++||||+++||+.||||||+|||+..+.+
T Consensus         7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~   54 (122)
T cd01526           7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLS   54 (122)
T ss_pred             ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhh
Confidence            457899999999865  4789999999999999999999999987654

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=98.83  E-value=2.2e-09  Score=71.85  Aligned_cols=42  Identities=38%  Similarity=0.609  Sum_probs=37.3

Q ss_pred             cCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        75 Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      ++++++.+++.++.++||||++++|..||||||+|+|+.++.
T Consensus         1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~   42 (90)
T cd01524           1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPLDELR   42 (90)
T ss_pred             CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCHHHHH
Confidence            478899999877789999999999999999999999986654

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=98.80  E-value=4.2e-09  Score=72.74  Aligned_cols=46  Identities=33%  Similarity=0.494  Sum_probs=39.8

Q ss_pred             CCCccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      ..+.++++++.+++++ +.++||||++.||+.||||||+|+|++.+.
T Consensus         3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~   49 (108)
T PRK00162          3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLG   49 (108)
T ss_pred             CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHH
Confidence            3467999999999854 578999999999999999999999986654

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=98.80  E-value=4.1e-09  Score=73.25  Aligned_cols=44  Identities=27%  Similarity=0.367  Sum_probs=39.0

Q ss_pred             CccCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           73 TSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        73 ~~Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      ..++++++.+++.+   +.++||||++.||..||||||+|+|+..+.
T Consensus         8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~   54 (110)
T cd01521           8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREIC   54 (110)
T ss_pred             eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhh
Confidence            46899999999864   378999999999999999999999998765

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=98.80  E-value=6.4e-09  Score=74.14  Aligned_cols=45  Identities=29%  Similarity=0.448  Sum_probs=38.4

Q ss_pred             CccCHHHHHHHHhC-------CCEEEeeCChhhhhcCCCCCceeeCCC-CCCC
Q 032868           73 TSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYM-DDKE  117 (131)
Q Consensus        73 ~~Is~~el~~l~~~-------~~~LIDVRep~E~~~ghIpgAi~IPl~-~i~~  117 (131)
                      ..|+++++.+++++       ++++||||+++||+.||||||+|||+. .+.+
T Consensus         2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~   54 (121)
T cd01530           2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEE   54 (121)
T ss_pred             CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHH
Confidence            46899999999854       478999999999999999999999986 3443

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=98.76  E-value=8.7e-09  Score=72.68  Aligned_cols=43  Identities=30%  Similarity=0.373  Sum_probs=37.9

Q ss_pred             cCHHHHHHHHhC--CCEEEeeCChhhhh-cCCCCCceeeCCCCCCC
Q 032868           75 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMDDKE  117 (131)
Q Consensus        75 Is~~el~~l~~~--~~~LIDVRep~E~~-~ghIpgAi~IPl~~i~~  117 (131)
                      |+++++.+++++  +.++||||++.||+ .||||||+|+|+.++..
T Consensus         1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~   46 (117)
T cd01522           1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPD   46 (117)
T ss_pred             CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhccc
Confidence            578899999865  48899999999999 99999999999987653

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=98.75  E-value=6.5e-09  Score=70.86  Aligned_cols=44  Identities=27%  Similarity=0.411  Sum_probs=37.8

Q ss_pred             ccCHHHHHHHHhCC---CEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           74 SVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        74 ~Is~~el~~l~~~~---~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      .|+++++.+++..+   .++||||+++||..+|||||+|+|+..+.+
T Consensus         1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~   47 (101)
T cd01528           1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPE   47 (101)
T ss_pred             CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHH
Confidence            37889999998643   789999999999999999999999866543

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=98.74  E-value=9.4e-09  Score=86.18  Aligned_cols=68  Identities=16%  Similarity=0.167  Sum_probs=52.8

Q ss_pred             eeeecccCCCcccccccccccccchhhhccccCcccccCCCCccCHHHHHHHHhCC-CEEEeeCChhhhhcCCCC---Cc
Q 032868           32 GLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---GA  107 (131)
Q Consensus        32 ~~l~l~~~P~r~~i~~~~~~~~~~~~~~c~~~~~~~~~~~~~~Is~~el~~l~~~~-~~LIDVRep~E~~~ghIp---gA  107 (131)
                      ..+++.++|.|+.+..+    .++|..              ..++++++.++++++ .++||||+++||+.||||   ||
T Consensus       248 ~~~~~~~~~~c~~~~~~----~~~~~~--------------~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gA  309 (370)
T PRK05600        248 RSFRVGADPARPLVTRL----RPSYEA--------------ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGAS  309 (370)
T ss_pred             EEEEecCCCCCCccccc----cCcchh--------------cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCcc
Confidence            45677888887766553    123331              268999999998654 789999999999999998   59


Q ss_pred             eeeCCCCCCC
Q 032868          108 INVPYMDDKE  117 (131)
Q Consensus       108 i~IPl~~i~~  117 (131)
                      +|||++.+.+
T Consensus       310 inIPl~~l~~  319 (370)
T PRK05600        310 LKLPLSAITD  319 (370)
T ss_pred             EeCcHHHhhc
Confidence            9999988864

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=98.73  E-value=8.9e-09  Score=86.19  Aligned_cols=68  Identities=19%  Similarity=0.276  Sum_probs=56.6

Q ss_pred             ccchhhhccccCccc----ccCCCCccCHHHHHHHHhCC--CEEEeeCChhhhhcCCCCCceeeCCCCCCCCcc
Q 032868           53 ILSFCPKASLRGNLE----AVGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMDDKEPEI  120 (131)
Q Consensus        53 ~~~~~~~c~~~~~~~----~~~~~~~Is~~el~~l~~~~--~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~~~  120 (131)
                      .++|+.||+......    .-.....|++.|++++++++  .++||||++.||++.|+|+|+|||+.+++++..
T Consensus       293 ~~dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~  366 (427)
T KOG2017|consen  293 LIDYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG  366 (427)
T ss_pred             ccchhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh
Confidence            789999999875442    11235689999999999763  899999999999999999999999998887643

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=98.71  E-value=8.2e-09  Score=69.99  Aligned_cols=40  Identities=35%  Similarity=0.659  Sum_probs=35.1

Q ss_pred             CHHHHHHHHh-CCCEEEeeCChhhhhcCCCCCceeeCCCCC
Q 032868           76 PVRVAHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMDD  115 (131)
Q Consensus        76 s~~el~~l~~-~~~~LIDVRep~E~~~ghIpgAi~IPl~~i  115 (131)
                      |++|+++++. .+++|||||++.+|..||||||+|+|...+
T Consensus         1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~   41 (113)
T PF00581_consen    1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSL   41 (113)
T ss_dssp             -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGG
T ss_pred             CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCcccccccc
Confidence            5789999983 459999999999999999999999999665

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>PLN02160 thiosulfate sulfurtransferase

Probab=98.71  E-value=1.8e-08  Score=73.33  Aligned_cols=44  Identities=55%  Similarity=0.884  Sum_probs=38.8

Q ss_pred             CCccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCc--eeeCCCCC
Q 032868           72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMDD  115 (131)
Q Consensus        72 ~~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgA--i~IPl~~i  115 (131)
                      +..++++++.++++++..|||||+++||..||||||  +|||+..+
T Consensus        14 ~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~   59 (136)
T PLN02160         14 VVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLN   59 (136)
T ss_pred             eeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhc
Confidence            467999999999977778999999999999999999  89997443

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=98.69  E-value=1.1e-08  Score=71.30  Aligned_cols=44  Identities=20%  Similarity=0.402  Sum_probs=37.9

Q ss_pred             CccCHHHHHHHHhCC---CEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           73 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        73 ~~Is~~el~~l~~~~---~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      +.|+++++.+++..+   .++||||++ ||..||||||+|+|+..+..
T Consensus         2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~   48 (113)
T cd01531           2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKA   48 (113)
T ss_pred             CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhh
Confidence            458999999998653   689999999 99999999999999987653

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=98.69  E-value=1.2e-08  Score=70.91  Aligned_cols=43  Identities=30%  Similarity=0.572  Sum_probs=36.9

Q ss_pred             cCHHHHHHHHhC-CCEEEeeCChhhhhc-----------CCCCCceeeCCCCCCC
Q 032868           75 VPVRVAHELLQA-GHRYLDVRTPEEFSA-----------GHATGAINVPYMDDKE  117 (131)
Q Consensus        75 Is~~el~~l~~~-~~~LIDVRep~E~~~-----------ghIpgAi~IPl~~i~~  117 (131)
                      ++++++.+++++ +.+|||||++.||..           ||||||+|+|++.+..
T Consensus         1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~   55 (118)
T cd01449           1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLD   55 (118)
T ss_pred             CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcC
Confidence            478889888865 489999999999987           9999999999977654

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=98.69  E-value=1.9e-08  Score=70.47  Aligned_cols=43  Identities=30%  Similarity=0.354  Sum_probs=38.1

Q ss_pred             cCHHHHHHHHhC-CCEEEeeCCh-------hhhhcCCCCCceeeCCCCCCC
Q 032868           75 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        75 Is~~el~~l~~~-~~~LIDVRep-------~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ++++++.+++.. +.+|||||++       +||..||||||+|+|+..+..
T Consensus         2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~   52 (122)
T cd01448           2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLD   52 (122)
T ss_pred             cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccc
Confidence            688999999865 5789999999       999999999999999977754

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=98.69  E-value=2.3e-08  Score=67.51  Aligned_cols=42  Identities=31%  Similarity=0.417  Sum_probs=35.9

Q ss_pred             cCHHHHHHHHhC-CCEEEeeCChhhh-hcCCCCCceeeCCCCCC
Q 032868           75 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMDDK  116 (131)
Q Consensus        75 Is~~el~~l~~~-~~~LIDVRep~E~-~~ghIpgAi~IPl~~i~  116 (131)
                      |+++++.+++++ +.++||||++.|| ..||||||+|+|+..+.
T Consensus         1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~   44 (103)
T cd01447           1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLE   44 (103)
T ss_pred             CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhh
Confidence            578899988864 5889999999998 57999999999987654

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=98.68  E-value=1.8e-08  Score=84.00  Aligned_cols=50  Identities=34%  Similarity=0.580  Sum_probs=41.5

Q ss_pred             CHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCCCcccCCCc
Q 032868           76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICGGSI  125 (131)
Q Consensus        76 s~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~~~~~~~~  125 (131)
                      ...++.+++.++..|||||+|.||..||||||+|+|+.+..++...|+.+
T Consensus         4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Y   53 (345)
T PRK11784          4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCY   53 (345)
T ss_pred             cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhh
Confidence            46778888777789999999999999999999999998776666555443

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=98.62  E-value=2.9e-08  Score=66.38  Aligned_cols=42  Identities=36%  Similarity=0.470  Sum_probs=37.0

Q ss_pred             cCHHHHHHHHhC--CCEEEeeCChhhhhc--CCCCCceeeCCCCCC
Q 032868           75 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMDDK  116 (131)
Q Consensus        75 Is~~el~~l~~~--~~~LIDVRep~E~~~--ghIpgAi~IPl~~i~  116 (131)
                      |+++++.+++++  +.++||||++.||..  ||||||+|+|+..+.
T Consensus         2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~   47 (96)
T cd01444           2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLD   47 (96)
T ss_pred             cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHH
Confidence            678899998865  389999999999999  999999999997664

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>PRK05320 rhodanese superfamily protein; Provisional

Probab=98.58  E-value=4.7e-08  Score=78.39  Aligned_cols=48  Identities=25%  Similarity=0.238  Sum_probs=41.0

Q ss_pred             CCCCccCHHHHHHHHhC-------CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        70 ~~~~~Is~~el~~l~~~-------~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      +....++++++.++++.       +.+|||||++.||+.||||||+|||++++.+
T Consensus       107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~  161 (257)
T PRK05320        107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTE  161 (257)
T ss_pred             CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhh
Confidence            34578999999998854       2689999999999999999999999987643

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=98.52  E-value=5.5e-08  Score=80.03  Aligned_cols=39  Identities=41%  Similarity=0.750  Sum_probs=34.3

Q ss_pred             CEEEeeCChhhhhcCCCCCceeeCCCCCCCCcccCCCch
Q 032868           88 HRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICGGSID  126 (131)
Q Consensus        88 ~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~~~~~~~~~  126 (131)
                      ..|||||+|.||..||||||+|||+.+.+++...|+.++
T Consensus         3 ~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~yk   41 (311)
T TIGR03167         3 DPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYK   41 (311)
T ss_pred             CEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhh
Confidence            579999999999999999999999988777777776654

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK01415 hypothetical protein; Validated

Probab=98.51  E-value=9.6e-08  Score=76.49  Aligned_cols=47  Identities=19%  Similarity=0.123  Sum_probs=40.9

Q ss_pred             CCCccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ....|+++++.+++++ +.++||||++.||+.|||+||+|+|+..+.+
T Consensus       110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e  157 (247)
T PRK01415        110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQ  157 (247)
T ss_pred             CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhh
Confidence            3467999999999975 5899999999999999999999999876643

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=98.45  E-value=9.2e-08  Score=64.57  Aligned_cols=30  Identities=37%  Similarity=0.597  Sum_probs=27.1

Q ss_pred             CCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           87 GHRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        87 ~~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      +.++||||++.||+.||||||+|+|+.++.
T Consensus        12 ~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~   41 (96)
T cd01529          12 GTALLDVRAEDEYAAGHLPGKRSIPGAALV   41 (96)
T ss_pred             CeEEEeCCCHHHHcCCCCCCcEeCCHHHhc
Confidence            489999999999999999999999986554

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=98.45  E-value=1.9e-07  Score=66.63  Aligned_cols=41  Identities=29%  Similarity=0.289  Sum_probs=36.8

Q ss_pred             cCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCC
Q 032868           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDD  115 (131)
Q Consensus        75 Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i  115 (131)
                      |+++++.++++.   +.++||||.+.+|..||||||+|+|+..+
T Consensus         2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~   45 (132)
T cd01446           2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTI   45 (132)
T ss_pred             cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHH
Confidence            789999999863   48999999999999999999999998754

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=98.42  E-value=2.1e-07  Score=76.63  Aligned_cols=47  Identities=28%  Similarity=0.362  Sum_probs=41.3

Q ss_pred             CCCccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ....++++++.+++++ +.+|||||++.||+.||||||+|+|+..+.+
T Consensus       110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~  157 (314)
T PRK00142        110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFRE  157 (314)
T ss_pred             CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhh
Confidence            4467999999998865 4899999999999999999999999987753

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=98.41  E-value=1.8e-07  Score=78.14  Aligned_cols=46  Identities=24%  Similarity=0.262  Sum_probs=40.8

Q ss_pred             CCccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        72 ~~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      +..|+++++.++++++.++||||+++||..||||||+|+|+..+..
T Consensus         2 v~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~   47 (376)
T PRK08762          2 IREISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRGFLEL   47 (376)
T ss_pred             CceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHHHHHH
Confidence            3568999999999877899999999999999999999999876543

>smart00450 RHOD Rhodanese Homology Domain

Probab=98.39  E-value=1.5e-07  Score=61.66  Aligned_cols=33  Identities=39%  Similarity=0.700  Sum_probs=29.3

Q ss_pred             CCCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           86 AGHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        86 ~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      .+.+|||||++.||..+|||||+|+|+..+...
T Consensus         3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~   35 (100)
T smart00450        3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDR   35 (100)
T ss_pred             CCEEEEECCCHHHhccCCCCCceeCCHHHhccC
Confidence            357899999999999999999999999877654

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=98.37  E-value=1.4e-07  Score=63.65  Aligned_cols=31  Identities=26%  Similarity=0.358  Sum_probs=27.7

Q ss_pred             CCCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           86 AGHRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        86 ~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      ++.+|||||++.||..+|||||+|+|+..+.
T Consensus         9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~   39 (92)
T cd01532           9 EEIALIDVREEDPFAQSHPLWAANLPLSRLE   39 (92)
T ss_pred             CCeEEEECCCHHHHhhCCcccCeeCCHHHHH
Confidence            4589999999999999999999999987653

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=98.29  E-value=3.9e-07  Score=59.14  Aligned_cols=38  Identities=50%  Similarity=0.799  Sum_probs=31.1

Q ss_pred             HHHH-hCCCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           81 HELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        81 ~~l~-~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      .+++ +.+..+||||++.||+.+|||||+|+|...+...
T Consensus         3 ~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~   41 (89)
T cd00158           3 KELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEER   41 (89)
T ss_pred             HHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhH
Confidence            3444 3458999999999999999999999999776543

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=98.26  E-value=4.8e-07  Score=74.20  Aligned_cols=55  Identities=15%  Similarity=0.248  Sum_probs=42.7

Q ss_pred             cCHHHHHHHHhC-CCEEEeeCChhhh-----------hcCCCCCceeeCCCCCCCCcccCCCchhhc
Q 032868           75 VPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYMDDKEPEICGGSIDSFS  129 (131)
Q Consensus        75 Is~~el~~l~~~-~~~LIDVRep~E~-----------~~ghIpgAi~IPl~~i~~~~~~~~~~~~f~  129 (131)
                      ++.+++.+.+++ +..|||+|++.||           ..||||||+|+|+..+.+.+..-++.++|+
T Consensus       192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~  258 (320)
T PLN02723        192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELK  258 (320)
T ss_pred             ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHH
Confidence            678888888754 4789999999998           469999999999977665543346666665

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=98.25  E-value=3.5e-07  Score=63.71  Aligned_cols=31  Identities=42%  Similarity=0.804  Sum_probs=27.9

Q ss_pred             CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           87 GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        87 ~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ...+||||+++||..||||||+|||+.++.+
T Consensus        18 ~~~lIDvR~~~ef~~ghIpgAinip~~~l~~   48 (101)
T TIGR02981        18 AEHWIDVRIPEQYQQEHIQGAINIPLKEIKE   48 (101)
T ss_pred             CCEEEECCCHHHHhcCCCCCCEECCHHHHHH
Confidence            4689999999999999999999999977654

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=98.23  E-value=1e-06  Score=70.69  Aligned_cols=44  Identities=23%  Similarity=0.290  Sum_probs=37.9

Q ss_pred             ccCHHHHHHHHhC-CCEEEeeCC----------hhhhhcCCCCCceeeCCCCCCC
Q 032868           74 SVPVRVAHELLQA-GHRYLDVRT----------PEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        74 ~Is~~el~~l~~~-~~~LIDVRe----------p~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      -++++++.+.+++ +++|||||.          +.+|..||||||+|+|+..+..
T Consensus         6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~   60 (281)
T PRK11493          6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSD   60 (281)
T ss_pred             ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcC
Confidence            4899999999865 489999996          7899999999999999876544

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=98.23  E-value=9.5e-07  Score=64.43  Aligned_cols=43  Identities=26%  Similarity=0.372  Sum_probs=35.7

Q ss_pred             cCHHHHHHHHh-----CCCEEEeeCCh--------hhhhc------------CCCCCceeeCCCCCCC
Q 032868           75 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMDDKE  117 (131)
Q Consensus        75 Is~~el~~l~~-----~~~~LIDVRep--------~E~~~------------ghIpgAi~IPl~~i~~  117 (131)
                      |+++++.+.++     .++.|||+|..        .+|..            ||||||+|+|+..+..
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~   68 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLD   68 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhC
Confidence            57888988886     24899999987        89987            9999999999866543

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=98.22  E-value=4.3e-07  Score=63.64  Aligned_cols=31  Identities=42%  Similarity=0.830  Sum_probs=27.4

Q ss_pred             CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           87 GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        87 ~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      .-.+||||+++||+.+|||||+|+|+.++.+
T Consensus        20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~   50 (104)
T PRK10287         20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKE   50 (104)
T ss_pred             CCEEEECCCHHHHhcCCCCccEECCHHHHHH
Confidence            3579999999999999999999999876643

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=98.20  E-value=2.8e-06  Score=63.60  Aligned_cols=42  Identities=19%  Similarity=0.276  Sum_probs=34.5

Q ss_pred             CCCccCHHHHHHHHhC-CCEEEeeCChh----hhhcC---------CCCCceeeCC
Q 032868           71 VPTSVPVRVAHELLQA-GHRYLDVRTPE----EFSAG---------HATGAINVPY  112 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~-~~~LIDVRep~----E~~~g---------hIpgAi~IPl  112 (131)
                      ....|+++++.+++++ +.+|||||++.    ||..|         |||||+|+|.
T Consensus        34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~   89 (162)
T TIGR03865        34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPN   89 (162)
T ss_pred             CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecc
Confidence            4568999999999965 48899999976    45444         9999999995

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=98.20  E-value=2.2e-06  Score=58.10  Aligned_cols=34  Identities=47%  Similarity=0.758  Sum_probs=30.9

Q ss_pred             CCCEEEeeCChhhhhcCCCCC-ceeeCCCCCCCCc
Q 032868           86 AGHRYLDVRTPEEFSAGHATG-AINVPYMDDKEPE  119 (131)
Q Consensus        86 ~~~~LIDVRep~E~~~ghIpg-Ai~IPl~~i~~~~  119 (131)
                      ++.++||||++.||+.+|||| ++|||++++.+..
T Consensus        19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~   53 (110)
T COG0607          19 EDAVLLDVREPEEYERGHIPGAAINIPLSELKAAE   53 (110)
T ss_pred             CCCEEEeccChhHhhhcCCCcceeeeecccchhhh
Confidence            358999999999999999999 9999999988763

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=98.11  E-value=2e-06  Score=71.61  Aligned_cols=45  Identities=36%  Similarity=0.442  Sum_probs=38.2

Q ss_pred             CCccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        72 ~~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ...++++++.++. ++.++||||+++||+.+|||||+|+|+..+..
T Consensus       260 ~~~i~~~~~~~~~-~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~  304 (355)
T PRK05597        260 GEVLDVPRVSALP-DGVTLIDVREPSEFAAYSIPGAHNVPLSAIRE  304 (355)
T ss_pred             ccccCHHHHHhcc-CCCEEEECCCHHHHccCcCCCCEEeCHHHhhh
Confidence            3578889988654 45789999999999999999999999977654

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=98.10  E-value=1.3e-06  Score=64.24  Aligned_cols=38  Identities=21%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             HHHHHhCC--CEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           80 AHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        80 l~~l~~~~--~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      +.++++++  .+|||||++.+|..||||||+|+|...+..
T Consensus         2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~   41 (145)
T cd01535           2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQ   41 (145)
T ss_pred             hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHH
Confidence            45566443  799999999999999999999999876543

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=98.09  E-value=3.1e-06  Score=75.25  Aligned_cols=43  Identities=23%  Similarity=0.215  Sum_probs=38.0

Q ss_pred             CccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCC
Q 032868           73 TSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDD  115 (131)
Q Consensus        73 ~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i  115 (131)
                      ..|++++|++++++ +.+|||||++.||..||||||+|++++.+
T Consensus         9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~   52 (610)
T PRK09629          9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRT   52 (610)
T ss_pred             ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHh
Confidence            35899999999965 48999999999999999999999997643

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=98.01  E-value=4e-06  Score=68.47  Aligned_cols=44  Identities=34%  Similarity=0.634  Sum_probs=36.5

Q ss_pred             ccCHHHHHHHHhC-CCEEEeeCChhhhhc----------CCCCCceeeCCCCCCC
Q 032868           74 SVPVRVAHELLQA-GHRYLDVRTPEEFSA----------GHATGAINVPYMDDKE  117 (131)
Q Consensus        74 ~Is~~el~~l~~~-~~~LIDVRep~E~~~----------ghIpgAi~IPl~~i~~  117 (131)
                      .++..++....+. +.+|||+|.+.||.-          ||||||+|||...+.+
T Consensus       157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~  211 (285)
T COG2897         157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVD  211 (285)
T ss_pred             cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhc
Confidence            4566667776654 478999999999987          9999999999988777

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=97.90  E-value=8.5e-06  Score=72.48  Aligned_cols=44  Identities=27%  Similarity=0.453  Sum_probs=36.1

Q ss_pred             ccCHHHHHHHHhC-CCEEEeeCChhhhh--------cCCCCCceeeCCCCCCC
Q 032868           74 SVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHATGAINVPYMDDKE  117 (131)
Q Consensus        74 ~Is~~el~~l~~~-~~~LIDVRep~E~~--------~ghIpgAi~IPl~~i~~  117 (131)
                      .++.+++.+.+++ +..|||+|+++||.        .||||||+|+|+..+.+
T Consensus       148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~  200 (610)
T PRK09629        148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMD  200 (610)
T ss_pred             cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcC
Confidence            4678888888854 47899999999994        79999999999865443

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=97.89  E-value=1.1e-05  Score=66.29  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=38.3

Q ss_pred             CccCHHHHHHHHhC-CCEEEeeC--------C-hhhhhcCCCCCceeeCCCCCCCC
Q 032868           73 TSVPVRVAHELLQA-GHRYLDVR--------T-PEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        73 ~~Is~~el~~l~~~-~~~LIDVR--------e-p~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ..|++++|.+++++ +.+|||||        + ..+|..||||||+|++++.+.+.
T Consensus        22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~   77 (320)
T PLN02723         22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDR   77 (320)
T ss_pred             ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCC
Confidence            46999999999965 58899995        4 37899999999999998766554

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=97.82  E-value=1.1e-05  Score=64.74  Aligned_cols=43  Identities=26%  Similarity=0.406  Sum_probs=33.2

Q ss_pred             cCHHHHHHHHhC-CCEEEeeCChhhhh-----------cCCCCCceeeCCCCCCC
Q 032868           75 VPVRVAHELLQA-GHRYLDVRTPEEFS-----------AGHATGAINVPYMDDKE  117 (131)
Q Consensus        75 Is~~el~~l~~~-~~~LIDVRep~E~~-----------~ghIpgAi~IPl~~i~~  117 (131)
                      .+.+++...+++ +..|||+|++.||.           .||||||+|+|+..+.+
T Consensus       155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~  209 (281)
T PRK11493        155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVR  209 (281)
T ss_pred             ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcC
Confidence            345555555544 47899999999995           69999999999877654

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.79  E-value=1.9e-05  Score=65.53  Aligned_cols=46  Identities=26%  Similarity=0.327  Sum_probs=39.5

Q ss_pred             CCCccCHHHHHHHHhCC-------CEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           71 VPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~~-------~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      .++.|+++.|+.|+.+.       +++||+|-|.||.-|||+||+||+-.+..
T Consensus       154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~  206 (325)
T KOG3772|consen  154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELL  206 (325)
T ss_pred             cccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhh
Confidence            56789999999999652       56999999999999999999999865443

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=97.58  E-value=3.4e-05  Score=66.66  Aligned_cols=38  Identities=16%  Similarity=0.246  Sum_probs=31.5

Q ss_pred             HHHHHhCCCEEEeeCChhhhhcCCCCC----ceeeCCCCCCC
Q 032868           80 AHELLQAGHRYLDVRTPEEFSAGHATG----AINVPYMDDKE  117 (131)
Q Consensus        80 l~~l~~~~~~LIDVRep~E~~~ghIpg----Ai~IPl~~i~~  117 (131)
                      +.+.+..+.++||||+++||+.+||||    |+|+|+.++.+
T Consensus       400 ~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~  441 (482)
T PRK01269        400 TVSELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLST  441 (482)
T ss_pred             HHHhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHH
Confidence            333344568999999999999999999    99999977754

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=96.90  E-value=0.00039  Score=57.33  Aligned_cols=46  Identities=26%  Similarity=0.265  Sum_probs=40.0

Q ss_pred             CCccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        72 ~~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      -.-|+++++++++.+ +.++||+|+.-||++||+.||++.+...+++
T Consensus       112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFre  158 (308)
T COG1054         112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFRE  158 (308)
T ss_pred             cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhh
Confidence            456899999999965 6999999999999999999999988776654

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=96.29  E-value=0.0038  Score=51.11  Aligned_cols=58  Identities=24%  Similarity=0.244  Sum_probs=41.9

Q ss_pred             CccCHHHHHHHHhC------CCEEEeeCCh--hhhhcCCCCCceeeCCCCCCCCcc--cC--CCchhhcc
Q 032868           73 TSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMDDKEPEI--CG--GSIDSFSK  130 (131)
Q Consensus        73 ~~Is~~el~~l~~~------~~~LIDVRep--~E~~~ghIpgAi~IPl~~i~~~~~--~~--~~~~~f~~  130 (131)
                      .-|+++.|.+.+.+      +..+++++..  .+|..+|||||+++.++.+.+...  .+  -++++|.+
T Consensus        11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~   80 (285)
T COG2897          11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAK   80 (285)
T ss_pred             eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHH
Confidence            46899999998753      4556666665  899999999999999987766543  23  44456653

>COG2603 Predicted ATPase [General function prediction only]

Probab=96.23  E-value=0.0018  Score=53.58  Aligned_cols=50  Identities=36%  Similarity=0.484  Sum_probs=40.6

Q ss_pred             HHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCCCcccCCCch
Q 032868           77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICGGSID  126 (131)
Q Consensus        77 ~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~~~~~~~~~  126 (131)
                      .++...+..++..|||||.|-||..|+.|+++|+|+.+-.++...|++++
T Consensus         5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yK   54 (334)
T COG2603           5 EQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYK   54 (334)
T ss_pred             HHHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHh
Confidence            44566666677899999999999999999999999988777666665544

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.84  E-value=0.047  Score=45.43  Aligned_cols=51  Identities=10%  Similarity=-0.120  Sum_probs=36.8

Q ss_pred             hhhhccccCcccccCCCCccCHHHHHHHHh-------CCCEEEeeCChhhhhcCCCCCc
Q 032868           56 FCPKASLRGNLEAVGVPTSVPVRVAHELLQ-------AGHRYLDVRTPEEFSAGHATGA  107 (131)
Q Consensus        56 ~~~~c~~~~~~~~~~~~~~Is~~el~~l~~-------~~~~LIDVRep~E~~~ghIpgA  107 (131)
                      +..+|+........+....++++++.+++.       .+.++||||+++ |+..++|+-
T Consensus       260 ~~~lcg~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g  317 (339)
T PRK07688        260 TAVLCGRNTVQIRPPHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG  317 (339)
T ss_pred             hhhhcCccccccccCCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence            447898643222223446899999988872       247899999999 999999853

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=93.63  E-value=0.034  Score=45.66  Aligned_cols=42  Identities=31%  Similarity=0.593  Sum_probs=34.0

Q ss_pred             CCEEEeeCChhhhh-----------cCCCCCceeeCCCCCCCCcccCCCchhh
Q 032868           87 GHRYLDVRTPEEFS-----------AGHATGAINVPYMDDKEPEICGGSIDSF  128 (131)
Q Consensus        87 ~~~LIDVRep~E~~-----------~ghIpgAi~IPl~~i~~~~~~~~~~~~f  128 (131)
                      ++..||.|...+|.           -||||||+|+|+..+...+-.-+++++-
T Consensus       172 ~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl  224 (286)
T KOG1529|consen  172 NFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDL  224 (286)
T ss_pred             cceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHH
Confidence            48999999999883           4999999999999887776666655543

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=93.62  E-value=0.043  Score=46.28  Aligned_cols=41  Identities=22%  Similarity=0.366  Sum_probs=36.4

Q ss_pred             CCCccCHHHHHHHHhCC-------CEEEeeCChhhhhcCCCCCceeeC
Q 032868           71 VPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVP  111 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~~-------~~LIDVRep~E~~~ghIpgAi~IP  111 (131)
                      .++.|+++.++.++++.       ..+||.|=+-||.-|||-+|+||-
T Consensus       240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~  287 (427)
T COG5105         240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNIS  287 (427)
T ss_pred             chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecc
Confidence            46799999999999763       469999999999999999999985

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=91.91  E-value=0.032  Score=46.02  Aligned_cols=40  Identities=8%  Similarity=-0.029  Sum_probs=33.8

Q ss_pred             CHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCC
Q 032868           76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDD  115 (131)
Q Consensus        76 s~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i  115 (131)
                      +++++.+.+.....++|||....|+.+||+|++|+|.+.+
T Consensus        17 ~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~~~   56 (314)
T PRK00142         17 DPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIEQT   56 (314)
T ss_pred             CHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHHHH
Confidence            4677887776667799999999999999999999997543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	131
1tq1_A	129	Solution Structure Of At5g66040, A Putative Protein		7e-16

>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From Arabidosis Thaliana Length = 129

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 39/44 (88%)
Query: 71  VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMD 114
           VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM+
Sbjct: 16  VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMN 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
1tq1_A	129	AT5G66040, senescence-associated family protein; C	8e-19
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	7e-11
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	3e-09
2jtq_A	85	Phage shock protein E; solution structure rhodanes	2e-08
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	2e-08
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	7e-08
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	9e-08
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	1e-07
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	6e-07
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	7e-07
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	7e-07
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	1e-06
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	1e-06
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	2e-06
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	3e-06
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	2e-05
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	6e-05
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	3e-04
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	7e-06
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	1e-05
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	1e-05
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	1e-05
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	1e-05
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	3e-05
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	3e-05
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	4e-05
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	2e-04
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	2e-04
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	4e-04
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	5e-04
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	6e-04
3r2u_A	466	Metallo-beta-lactamase family protein; structural	8e-04

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score = 75.5 bits (186), Expect = 8e-19
 Identities = 37/48 (77%), Positives = 40/48 (83%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMD 114
           E   VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM+
Sbjct: 12  EESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMN 59

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Length = 134

 Score = 55.1 bits (132), Expect = 7e-11
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
            +++   L      ++DVRT  E+   H   AIN+P   + E    G
Sbjct: 6   VIKIEKALKLDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVG 52

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 49.9 bits (120), Expect = 3e-09
 Identities = 11/38 (28%), Positives = 14/38 (36%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVP 111
            V       LL+ G   +DVR  +  S      A  VP
Sbjct: 3   KVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVP 40

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Length = 85

 Score = 47.2 bits (113), Expect = 2e-08
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 10/44 (22%)

Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMD----------DKEPEI 120
              ++DVR PE++   H  GAIN+P  +          DK   +
Sbjct: 1   AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVPDKNDTV 44

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMD 114
           +DVR  +E+   H   A  +   D
Sbjct: 20  VDVRELDEYEELHLPNATLISVND 43

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 46.5 bits (111), Expect = 7e-08
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMD 114
           LDVR    ++ GH  GA+ +P  D
Sbjct: 17  LDVRDRSTYNDGHIMGAMAMPIED 40

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 47.0 bits (112), Expect = 9e-08
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 6/38 (15%)

Query: 80  AHEL---LQAGHRY---LDVRTPEEFSAGHATGAINVP 111
           AH L   L+ G      LDVR    ++ GH  GA+ +P
Sbjct: 4   AHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMP 41

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score = 45.7 bits (109), Expect = 1e-07
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 74  SVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVP 111
            + V  AH+ LQ     L D+R P+ F+ GHA  A ++ 
Sbjct: 6   CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLT 44

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score = 43.7 bits (104), Expect = 6e-07
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 80  AHELLQAGHRY--LDVRTPEEFSAGHATGAINVP 111
           A +L +    Y  LDVR P E   G    +IN+P
Sbjct: 8   AADLYENIKAYTVLDVREPFELIFGSIANSINIP 41

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 44.4 bits (105), Expect = 7e-07
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 91  LDVRTPEEFSAGHATGAINVPY 112
           +DVR  E +   H   AI++P 
Sbjct: 37  VDVRDAEAYKECHIPTAISIPG 58

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 44.4 bits (105), Expect = 7e-07
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 80  AHELLQAGHRY---LDVRTPEEFSAGHATGAINVPYMD 114
              ++         +DVR P E+S  H   +INVPY  
Sbjct: 30  MKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRS 67

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 74  SVPVRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVP 111
           S+ V    E +   +    +DVRT +E + G   GA  +P
Sbjct: 3   SITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIP 42

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 70  GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVP 111
           G   +V       +++ G   +DVR P E   G   G+IN+P
Sbjct: 486 GFVDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIP 527

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 73  TSVPVRVAHEL---LQAGHRY--LDVRTPEEFSAGHATGAINVPY 112
           + + VR  H++   L A      LDVR  + F+  H   A N+P 
Sbjct: 4   SQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPL 48

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVP 111
           P  +A  L + G R LD      ++  H  GA  V 
Sbjct: 381 PTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVL 416

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 40.1 bits (93), Expect = 6e-05
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVP 111
                 LDVRTPEE+ AGH  G+ + P
Sbjct: 280 DRTTYLLDVRTPEEYEAGHLPGSRSTP 306

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVPY 112
           +A    LD R  +E+      G I+VP 
Sbjct: 144 RAEAVILDARRFDEYQTMSIPGGISVPG 171

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 41.6 bits (98), Expect = 7e-06
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 79  VAHELLQAGHRY--LDVRT-PEEFSAGHATGAINVP 111
           V  ++  A  +Y  LDVR  P +       GAI +P
Sbjct: 22  VLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMP 57

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 73  TSVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPY--MDDKEPEI 120
           + +       L +  +  + DVR  E    GH  G+++      DDK   +
Sbjct: 28  SYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHL 78

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMDDKE 117
           +D R P E+  GH   A+N+P   D E
Sbjct: 69  VDCRYPYEYEGGHIKTAVNLPLERDAE 95

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMDDKE 117
           +D R P E+  GH  GA+N+   ++ E
Sbjct: 48  IDCRYPYEYEGGHIKGAVNLHMEEEVE 74

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMDDKE 117
           +D R P E+  GH   A+N+P   D E
Sbjct: 49  VDCRYPYEYEGGHIKTAVNLPLERDAE 75

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 80  AHELLQAGHRY--LDVRTPEEFSAGHATGAINVP 111
             ++         LDVR P E   G   GA+N+P
Sbjct: 477 FDQIDNLSEDQLLLDVRNPGELQNGGLEGAVNIP 510

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Length = 127

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 77  VRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVP 111
           V     LL +G  +  LDVR   E        A+++P
Sbjct: 5   VTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIP 41

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 40.8 bits (95), Expect = 4e-05
 Identities = 14/46 (30%), Positives = 20/46 (43%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
           +        P  V   L Q G   LDVR  +E++ GH   A ++P 
Sbjct: 369 DVASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPL 414

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMDDKE 117
           +D R P E+  GH  GA+N+   ++  
Sbjct: 82  IDCRYPYEYLGGHIQGALNLYSQEELF 108

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 6/42 (14%)

Query: 81  HELLQAGHRY-----LDVRTPEEFSAGHATGAINVPYMDDKE 117
            ELL           +D R   +   G    +IN+P +   E
Sbjct: 13  VELLDNPDSLVKAAVIDCR-DSDRDCGFIVNSINMPTISCTE 53

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 2/34 (5%)

Query: 80  AHELLQAG--HRYLDVRTPEEFSAGHATGAINVP 111
           A E+L        +DVR   E+         ++ 
Sbjct: 12  AWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLG 45

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 37.0 bits (85), Expect = 5e-04
 Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMDDKE 117
           +DVR   ++  GH     +  Y   K+
Sbjct: 57  VDVR-GSDYMGGHIKDGWHYAYSRLKQ 82

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A Length = 230

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 16/64 (25%)

Query: 72  PTSVPVRVAHELL------QAGHRYLDVRTPEEFS----------AGHATGAINVPYMDD 115
            T V  ++  + L            LDVR+PEEF            G   G+ N P    
Sbjct: 110 RTEVVAKLRRDWLLTADEAARHPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELF 169

Query: 116 KEPE 119
             PE
Sbjct: 170 LSPE 173

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 36.9 bits (85), Expect = 8e-04
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMD 114
           LDVR   E++ GH + A++VP+  
Sbjct: 391 LDVRNDNEWNNGHLSQAVHVPHGK 414

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.26
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.14
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.13
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.13
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.11
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.06
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.03
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.01
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.01
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.0
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.0
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	98.98
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	98.96
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	98.95
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	98.94
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	98.94
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	98.93
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	98.92
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	98.89
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	98.88
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	98.87
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	98.87
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	98.83
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	98.82
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	98.8
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	98.78
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	98.78
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	98.77
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	98.73
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	98.7
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	98.69
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	98.65
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	98.65
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	98.63
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	98.63
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	98.62
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	98.61
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	98.61
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	98.58
2jtq_A	85	Phage shock protein E; solution structure rhodanes	98.57
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.55
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	98.52
1vee_A	134	Proline-rich protein family; hypothetical protein,	98.48
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	98.46
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	98.46
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	98.44
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	98.44
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	98.39
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	98.37
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	98.36
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	98.35
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	98.34
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.33
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	98.3
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	98.29
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	98.29
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	98.21
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	98.19
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	98.14
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	98.03
3r2u_A	466	Metallo-beta-lactamase family protein; structural	97.94
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	97.88
3r2u_A	466	Metallo-beta-lactamase family protein; structural	97.61
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	97.07
1v8c_A	168	MOAD related protein; riken structural genomics/pr	96.21
2f46_A	156	Hypothetical protein; structural genomics, joint c	91.84

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.26  E-value=2.7e-12  Score=88.24  Aligned_cols=46  Identities=24%  Similarity=0.213  Sum_probs=41.2

Q ss_pred             CccCHHHHHHHHhC--CCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           73 TSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        73 ~~Is~~el~~l~~~--~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ++|+++|+++++.+  +++|||||++.||+.||||||+|||++++.++
T Consensus         2 k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~   49 (103)
T 3iwh_A            2 KSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDN   49 (103)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGGC
T ss_pred             CCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcccCcccchhhh
Confidence            57999999998854  38999999999999999999999999888765

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.14  E-value=2.2e-11  Score=82.07  Aligned_cols=46  Identities=26%  Similarity=0.299  Sum_probs=40.9

Q ss_pred             CccCHHHHHHHHh--CCCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           73 TSVPVRVAHELLQ--AGHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        73 ~~Is~~el~~l~~--~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      +.|+++++.++++  ++.+|||||+++||..||||||+|||++.+.+.
T Consensus         2 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~   49 (100)
T 3foj_A            2 ESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMNSIPDN   49 (100)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGGC
T ss_pred             CccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHHH
Confidence            5699999999884  358999999999999999999999999888654

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.13  E-value=5.1e-11  Score=84.37  Aligned_cols=48  Identities=27%  Similarity=0.412  Sum_probs=42.5

Q ss_pred             CCCccCHHHHHHHHh---CCCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           71 VPTSVPVRVAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        71 ~~~~Is~~el~~l~~---~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ....|+++++.++++   ++++|||||++.||+.||||||+|||+..+.+.
T Consensus        21 ~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~   71 (139)
T 3d1p_A           21 NIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDA   71 (139)
T ss_dssp             CCEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCEECCTTTCTTG
T ss_pred             CcceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHHhhhh
Confidence            456899999999985   358999999999999999999999999988643

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.11  E-value=9.7e-12  Score=82.94  Aligned_cols=46  Identities=24%  Similarity=0.172  Sum_probs=39.0

Q ss_pred             CccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        73 ~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      +.|+++++.++++++.+|||||++.||+.||||||+|+|++++.+.
T Consensus         2 ~~is~~~l~~~~~~~~~liDvR~~~e~~~ghi~gAi~ip~~~l~~~   47 (94)
T 1wv9_A            2 RKVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVPLEKIQKG   47 (94)
T ss_dssp             CEECGGGHHHHHHTTCEEEECCCC--CCSCCSSCCEECCHHHHTTT
T ss_pred             CcCCHHHHHHHHHCCCEEEECCCHHHHhcccCCCCEECCHHHHHHH
Confidence            4688999999887788999999999999999999999999877654

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.06  E-value=3.3e-11  Score=83.28  Aligned_cols=45  Identities=27%  Similarity=0.286  Sum_probs=39.5

Q ss_pred             ccCHHHHHHHHhC--CCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           74 SVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        74 ~Is~~el~~l~~~--~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      .|+++++.+++++  +.+|||||++.||+.||||||+|||+..+.+.
T Consensus         2 ~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~   48 (127)
T 3i2v_A            2 RVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERR   48 (127)
T ss_dssp             EECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSEECCHHHHHTT
T ss_pred             CCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCceeCChHHHhhh
Confidence            5899999999864  38999999999999999999999999776543

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.03  E-value=1.8e-10  Score=88.87  Aligned_cols=60  Identities=23%  Similarity=0.260  Sum_probs=49.3

Q ss_pred             chhhhccccCcccccCCCCccCHHHHHHHHhC-------CCEEEeeCChhhhhcCCCCCceeeCCCC
Q 032868           55 SFCPKASLRGNLEAVGVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMD  114 (131)
Q Consensus        55 ~~~~~c~~~~~~~~~~~~~~Is~~el~~l~~~-------~~~LIDVRep~E~~~ghIpgAi~IPl~~  114 (131)
                      +|..+|...........++.|+++++.+++++       +++|||||++.||+.||||||+|||+.+
T Consensus        39 d~~~~~~lp~~~~~~~~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~~  105 (216)
T 3op3_A           39 DFSKVCALPTVSGKHQDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQE  105 (216)
T ss_dssp             TSSSBCSSCCCCCSCSSSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSHH
T ss_pred             HHHHheecccccccCCCCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChHH
Confidence            67888876543333345788999999999965       3789999999999999999999999964

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.01  E-value=2.4e-10  Score=80.44  Aligned_cols=48  Identities=75%  Similarity=1.154  Sum_probs=42.0

Q ss_pred             cCCCCccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           69 VGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        69 ~~~~~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      ......|+++++.++++.+.+|||||++.||+.||||||+|||+..+.
T Consensus        14 ~~~~~~is~~e~~~~l~~~~~lIDvR~~~e~~~ghIpgAinip~~~~~   61 (129)
T 1tq1_A           14 SRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRG   61 (129)
T ss_dssp             SCCCEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCS
T ss_pred             cCCCcccCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCcEECcHhhcc
Confidence            445678999999999876689999999999999999999999996553

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.01  E-value=5.4e-10  Score=81.09  Aligned_cols=48  Identities=8%  Similarity=0.134  Sum_probs=41.7

Q ss_pred             CCCCccCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           70 GVPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        70 ~~~~~Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      .....|+++++.++++.   +.+|||||+++||+.||||||+|||+..+..
T Consensus        12 ~~~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gainip~~~~~~   62 (157)
T 1whb_A           12 KEKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISP   62 (157)
T ss_dssp             CCCSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCEEECSSSCCT
T ss_pred             ccCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCcccCHHHccC
Confidence            34568999999999863   5799999999999999999999999987754

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.00  E-value=8e-11  Score=80.64  Aligned_cols=46  Identities=30%  Similarity=0.353  Sum_probs=40.9

Q ss_pred             CCccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        72 ~~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ++.|+++++.+++++ .+|||||++.||+.||||||+|||++.+.+.
T Consensus         3 ~~~is~~el~~~l~~-~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~   48 (108)
T 3gk5_A            3 YRSINAADLYENIKA-YTVLDVREPFELIFGSIANSINIPISELREK   48 (108)
T ss_dssp             CCEECHHHHHHTTTT-CEEEECSCHHHHTTCBCTTCEECCHHHHHHH
T ss_pred             ccEeCHHHHHHHHcC-CEEEECCCHHHHhcCcCCCCEEcCHHHHHHH
Confidence            467999999999877 9999999999999999999999998776543

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.00  E-value=8.1e-11  Score=80.12  Aligned_cols=46  Identities=28%  Similarity=0.375  Sum_probs=40.1

Q ss_pred             CCccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        72 ~~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ++.|+++++.+++++ +.+|||||++.||+.||||||+|||++.+..
T Consensus         4 ~~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~   50 (108)
T 1gmx_A            4 FECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGA   50 (108)
T ss_dssp             CEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHHHHHH
T ss_pred             ccccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEeCCHHHHHH
Confidence            457999999999865 5899999999999999999999999876543

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=98.98  E-value=3.3e-10  Score=81.48  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=40.7

Q ss_pred             CccCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           73 TSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        73 ~~Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ..|+++++.+++.+   +.+|||||++.||..||||||+|||+..+...
T Consensus        16 ~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~   64 (144)
T 3nhv_A           16 YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINED   64 (144)
T ss_dssp             TEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCEECCGGGCSTT
T ss_pred             cccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCEECCHHHHhHH
Confidence            35899999999864   48999999999999999999999999988753

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=98.96  E-value=4.3e-10  Score=81.93  Aligned_cols=47  Identities=9%  Similarity=0.142  Sum_probs=40.7

Q ss_pred             CCCccCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           71 VPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ....|+++++.++++.   +.+|||||+++||+.||||||+|||++.+..
T Consensus        18 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAinip~~~l~~   67 (157)
T 2gwf_A           18 GSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISP   67 (157)
T ss_dssp             -CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCT
T ss_pred             CCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCcccCHHHcCC
Confidence            4567999999999863   5899999999999999999999999987653

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=98.95  E-value=2.4e-10  Score=83.87  Aligned_cols=47  Identities=26%  Similarity=0.364  Sum_probs=41.2

Q ss_pred             CCCCccCHHHHHHHHhC-------CCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        70 ~~~~~Is~~el~~l~~~-------~~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      .....|+++++.+++++       +.+|||||++.||+.||||||+|||+..+.
T Consensus        21 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~   74 (175)
T 2a2k_A           21 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDA   74 (175)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHH
T ss_pred             CCCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChhHHH
Confidence            35678999999999864       478999999999999999999999997653

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=98.94  E-value=3e-10  Score=82.18  Aligned_cols=47  Identities=21%  Similarity=0.384  Sum_probs=41.1

Q ss_pred             CCCCccCHHHHHHHHhC-------CCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        70 ~~~~~Is~~el~~l~~~-------~~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      .....|+++++.+++++       +.+|||||++.||+.||||||+|||+..+.
T Consensus        20 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~~~   73 (161)
T 1c25_A           20 QDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEV   73 (161)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHH
T ss_pred             CCcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChhHHH
Confidence            34678999999999864       478999999999999999999999997653

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=98.94  E-value=3.4e-10  Score=78.52  Aligned_cols=43  Identities=26%  Similarity=0.431  Sum_probs=36.9

Q ss_pred             CCccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        72 ~~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      +..|+++++.+  +++.+|||||++.||..||||||+|||+..+.
T Consensus         4 ~~~i~~~el~~--~~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~   46 (134)
T 3g5j_A            4 MSVIKIEKALK--LDKVIFVDVRTEGEYEEDHILNAINMPLFKNN   46 (134)
T ss_dssp             -CEECHHHHTT--CTTEEEEECSCHHHHHHCCCTTCEECCSSCHH
T ss_pred             ccccCHHHHHh--cCCcEEEEcCCHHHHhcCCCCCCEEcCccchh
Confidence            45789998876  45689999999999999999999999997654

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=98.93  E-value=7.6e-10  Score=80.02  Aligned_cols=45  Identities=24%  Similarity=0.305  Sum_probs=39.9

Q ss_pred             CCccCHHHHHHHHhC-----CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           72 PTSVPVRVAHELLQA-----GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        72 ~~~Is~~el~~l~~~-----~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      +..|+++++.+++++     +++|||||++ ||+.||||||+|||+..+..
T Consensus         4 ~~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~~   53 (152)
T 2j6p_A            4 YTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTE   53 (152)
T ss_dssp             CEEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCCH
T ss_pred             cCccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhhH
Confidence            457999999999865     6899999999 99999999999999988753

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=98.92  E-value=5.8e-10  Score=78.59  Aligned_cols=46  Identities=20%  Similarity=0.215  Sum_probs=40.6

Q ss_pred             CCCccCHHHHHHHHh--C-CCEEEeeCChhhhhc-CCCCCceeeCCCCCC
Q 032868           71 VPTSVPVRVAHELLQ--A-GHRYLDVRTPEEFSA-GHATGAINVPYMDDK  116 (131)
Q Consensus        71 ~~~~Is~~el~~l~~--~-~~~LIDVRep~E~~~-ghIpgAi~IPl~~i~  116 (131)
                      ....|+++++.++++  + +.+|||||++.||.. ||||||+|||+..+.
T Consensus        20 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~~ip~~~l~   69 (139)
T 2hhg_A           20 SIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGMLE   69 (139)
T ss_dssp             TSEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCEECCGGGHH
T ss_pred             hcCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeEECChHHHH
Confidence            456799999999987  3 489999999999999 999999999998764

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=98.89  E-value=5.5e-10  Score=80.04  Aligned_cols=43  Identities=23%  Similarity=0.242  Sum_probs=38.8

Q ss_pred             CccCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCC
Q 032868           73 TSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDD  115 (131)
Q Consensus        73 ~~Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i  115 (131)
                      +.|+++++.+++++   +.+|||||++.||+.||||||+|||+..+
T Consensus         4 ~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAinip~~~l   49 (153)
T 2vsw_A            4 TQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKL   49 (153)
T ss_dssp             EEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCEECCCCHH
T ss_pred             ccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCeeeChHHH
Confidence            46899999999863   48999999999999999999999999876

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=98.88  E-value=6.8e-10  Score=77.50  Aligned_cols=43  Identities=21%  Similarity=0.292  Sum_probs=34.7

Q ss_pred             ccCHHHHHH--------HHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           74 SVPVRVAHE--------LLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        74 ~Is~~el~~--------l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      .|+++++.+        ++++ +.+|||||++.||+.||||||+|||+..+.
T Consensus         2 ~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~   53 (142)
T 2ouc_A            2 IIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKI   53 (142)
T ss_dssp             EECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHH
T ss_pred             ccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHH
Confidence            478999988        5443 589999999999999999999999998754

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=98.87  E-value=4e-10  Score=80.92  Aligned_cols=44  Identities=27%  Similarity=0.401  Sum_probs=38.9

Q ss_pred             cCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        75 Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      |++++++++++.   +++|||||++.||..||||||+|||++.+.+.
T Consensus         2 Is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~   48 (141)
T 3ilm_A            2 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR   48 (141)
T ss_dssp             CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCEECCGGGHHHH
T ss_pred             CCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCEEcCHHHHHHH
Confidence            789999999862   48999999999999999999999999877654

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=98.87  E-value=1.8e-09  Score=76.94  Aligned_cols=47  Identities=23%  Similarity=0.254  Sum_probs=41.9

Q ss_pred             CCCccCHHHHHHHHh-C-CCEEEeeCChhhhhc-CC--CCCceeeCCCCCCC
Q 032868           71 VPTSVPVRVAHELLQ-A-GHRYLDVRTPEEFSA-GH--ATGAINVPYMDDKE  117 (131)
Q Consensus        71 ~~~~Is~~el~~l~~-~-~~~LIDVRep~E~~~-gh--IpgAi~IPl~~i~~  117 (131)
                      ....|+++++.++++ + +.+|||||++.||+. ||  ||||+|||+..+..
T Consensus        21 ~~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~~   72 (137)
T 1qxn_A           21 DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEP   72 (137)
T ss_dssp             SSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHH
T ss_pred             cCcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhhh
Confidence            456799999999986 4 489999999999999 99  99999999998864

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=98.83  E-value=6.6e-10  Score=80.58  Aligned_cols=48  Identities=17%  Similarity=0.169  Sum_probs=41.0

Q ss_pred             CCCccCHHHHHHHHh-CCCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           71 VPTSVPVRVAHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        71 ~~~~Is~~el~~l~~-~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      .+..|+++++.++++ ++.+|||||+++||+.||||||+|||++.+.+.
T Consensus        26 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgAinip~~~l~~~   74 (152)
T 1t3k_A           26 SISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDK   74 (152)
T ss_dssp             SSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSSTT
T ss_pred             CCceECHHHHHHHhcCCCEEEEECCChhhccCccCCCCEECCHHHHHHH
Confidence            346788888888775 358999999999999999999999999988654

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=98.82  E-value=6.4e-10  Score=79.47  Aligned_cols=45  Identities=27%  Similarity=0.267  Sum_probs=39.0

Q ss_pred             CCCccCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCC
Q 032868           71 VPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDD  115 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i  115 (131)
                      ....|+++++.+++++   +.+|||||++.||+.||||||+|||+..+
T Consensus        14 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAinip~~~~   61 (154)
T 1hzm_A           14 MAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGI   61 (154)
T ss_dssp             CSSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSH
T ss_pred             cccccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCceEeCccHH
Confidence            3467888999888853   58999999999999999999999999764

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=98.80  E-value=3e-09  Score=77.08  Aligned_cols=45  Identities=18%  Similarity=0.260  Sum_probs=38.8

Q ss_pred             CCCccCHHHHHHHHh--------C-CCEEEeeCChhhhhcCCCCCceeeCCCCC
Q 032868           71 VPTSVPVRVAHELLQ--------A-GHRYLDVRTPEEFSAGHATGAINVPYMDD  115 (131)
Q Consensus        71 ~~~~Is~~el~~l~~--------~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i  115 (131)
                      .+..|+++++.++++        + +.+|||||++.||..||||||+|||++.+
T Consensus         9 ~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l   62 (158)
T 3tg1_B            9 SIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADK   62 (158)
T ss_dssp             --CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSH
T ss_pred             CCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHH
Confidence            457899999999986        2 48999999999999999999999999986

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=98.78  E-value=6.9e-10  Score=77.52  Aligned_cols=45  Identities=22%  Similarity=0.180  Sum_probs=39.1

Q ss_pred             CccCHHHHHHHHhC---CCEEEeeCChhhh-hcCCCCCceeeCCCCCCC
Q 032868           73 TSVPVRVAHELLQA---GHRYLDVRTPEEF-SAGHATGAINVPYMDDKE  117 (131)
Q Consensus        73 ~~Is~~el~~l~~~---~~~LIDVRep~E~-~~ghIpgAi~IPl~~i~~  117 (131)
                      ..|+++++.+++++   +.+|||||++.|| ..||||||+|||++.+..
T Consensus        15 ~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~nip~~~l~~   63 (124)
T 3flh_A           15 LYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLAT   63 (124)
T ss_dssp             TEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCEECCHHHHHH
T ss_pred             ceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCEECCHHHHHH
Confidence            46999999999853   3899999999998 999999999999876653

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=98.78  E-value=4.2e-09  Score=80.00  Aligned_cols=47  Identities=26%  Similarity=0.364  Sum_probs=41.3

Q ss_pred             CCCCccCHHHHHHHHhC-------CCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        70 ~~~~~Is~~el~~l~~~-------~~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      .....|+++++.+++++       +++|||||++.||+.||||||+|||+..+.
T Consensus        41 ~~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~~l~   94 (211)
T 1qb0_A           41 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDA   94 (211)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHH
T ss_pred             CCCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCchHHH
Confidence            35678999999999865       478999999999999999999999997654

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=98.77  E-value=1.3e-09  Score=74.13  Aligned_cols=40  Identities=30%  Similarity=0.449  Sum_probs=28.9

Q ss_pred             HHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           79 VAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        79 el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ||+++++.   +++|||||++.||..||||||+|||++.+.+.
T Consensus         2 el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~   44 (106)
T 3hix_A            2 VLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR   44 (106)
T ss_dssp             -----------CCEEEECSCHHHHHTCEETTCEECCGGGHHHH
T ss_pred             hHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCEeCCHHHHHHH
Confidence            56677652   48999999999999999999999999877543

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=98.73  E-value=6e-09  Score=82.86  Aligned_cols=55  Identities=24%  Similarity=0.330  Sum_probs=44.3

Q ss_pred             ccCHHHHHHHHh-CCCEEEeeCChhhh-----------hcCCCCCceeeCCCCCCCCcccCCCchhh
Q 032868           74 SVPVRVAHELLQ-AGHRYLDVRTPEEF-----------SAGHATGAINVPYMDDKEPEICGGSIDSF  128 (131)
Q Consensus        74 ~Is~~el~~l~~-~~~~LIDVRep~E~-----------~~ghIpgAi~IPl~~i~~~~~~~~~~~~f  128 (131)
                      .++.+++.++++ ++.+|||||++.||           ..||||||+|||+.++.++...-+++++|
T Consensus       176 ~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~l  242 (302)
T 3olh_A          176 IKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEI  242 (302)
T ss_dssp             EECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTCEECCGGGGBCSSSCBCCHHHH
T ss_pred             eecHHHHHHhhcCCCcEEEecCCHHHccccccCCCcCCcCccCCCceecCHHHhcCCCCccCCHHHH
Confidence            578999988885 46899999999999           79999999999999887654333455544

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=98.70  E-value=1.5e-09  Score=80.25  Aligned_cols=46  Identities=20%  Similarity=0.283  Sum_probs=39.9

Q ss_pred             CCCccCHHHHHHHHhC--------CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           71 VPTSVPVRVAHELLQA--------GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~--------~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      .++.|+++++.+++++        +++|||||+ .||..||||||+|||+..+..
T Consensus        29 ~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~   82 (169)
T 3f4a_A           29 NVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQ   82 (169)
T ss_dssp             SEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHH
T ss_pred             CCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhc
Confidence            4568999999999863        389999999 999999999999999977654

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=98.69  E-value=1.9e-09  Score=73.85  Aligned_cols=42  Identities=17%  Similarity=0.234  Sum_probs=33.7

Q ss_pred             ccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        74 ~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      .|+++++.   +++.+|||||++.||+.||||||+|||+..+...
T Consensus         6 ~is~~el~---~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~   47 (110)
T 2k0z_A            6 AISLEEVN---FNDFIVVDVRELDEYEELHLPNATLISVNDQEKL   47 (110)
T ss_dssp             EEETTTCC---GGGSEEEEEECHHHHHHSBCTTEEEEETTCHHHH
T ss_pred             eeCHHHhc---cCCeEEEECCCHHHHhcCcCCCCEEcCHHHHHHH
Confidence            35555542   3458999999999999999999999999887644

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=98.65  E-value=8.7e-09  Score=79.74  Aligned_cols=46  Identities=26%  Similarity=0.455  Sum_probs=40.4

Q ss_pred             CccCHHHHHHHHhC-CCEEEeeCChhhhh--------cCCCCCceeeCCCCCCCC
Q 032868           73 TSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHATGAINVPYMDDKEP  118 (131)
Q Consensus        73 ~~Is~~el~~l~~~-~~~LIDVRep~E~~--------~ghIpgAi~IPl~~i~~~  118 (131)
                      ..|+++++.+++++ +.+|||||++.||.        .||||||+|||+..+.+.
T Consensus       147 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~~~ghIpgA~~ip~~~~~~~  201 (271)
T 1e0c_A          147 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDP  201 (271)
T ss_dssp             TBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEG
T ss_pred             ccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCCcCCcCCCceeccHHHhCCC
Confidence            45799999999865 48999999999999        999999999999887654

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=98.65  E-value=1.1e-08  Score=81.10  Aligned_cols=48  Identities=25%  Similarity=0.261  Sum_probs=42.6

Q ss_pred             CCCCccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           70 GVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        70 ~~~~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      .....|+++++.+++++ +.+|||||++.||+.||||||+|+|+..+.+
T Consensus       119 ~~~~~Is~~el~~ll~~~~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~~  167 (265)
T 4f67_A          119 NAGTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIENFRE  167 (265)
T ss_dssp             CTTCEECHHHHHHHTTCTTSEEEECSCHHHHHHEEETTCBCCCCSSGGG
T ss_pred             CCCceECHHHHHHHhcCCCeEEEEeCCchHhhcCcCCCCEeCCHHHHHh
Confidence            34578999999999965 5899999999999999999999999988754

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=98.63  E-value=1.2e-08  Score=80.42  Aligned_cols=46  Identities=22%  Similarity=0.393  Sum_probs=40.4

Q ss_pred             CccCHHHHHHHHh-CCCEEEeeCChhhh------------hcCCCCCceeeCCCCCCCC
Q 032868           73 TSVPVRVAHELLQ-AGHRYLDVRTPEEF------------SAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        73 ~~Is~~el~~l~~-~~~~LIDVRep~E~------------~~ghIpgAi~IPl~~i~~~  118 (131)
                      ..|+++++.++++ ++.+|||||++.||            ..||||||+|||+.++.+.
T Consensus       160 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA~nip~~~l~~~  218 (296)
T 1rhs_A          160 LLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTE  218 (296)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCT
T ss_pred             eEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcccCCCcCccCCCCEeecHHHhcCC
Confidence            4689999999885 46899999999999            8899999999999887654

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=98.63  E-value=1.2e-08  Score=79.05  Aligned_cols=46  Identities=17%  Similarity=0.156  Sum_probs=40.9

Q ss_pred             CccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           73 TSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        73 ~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ..|+++++.+++++ +.+|||||++.||..||||||+|||+..+..+
T Consensus         9 ~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~   55 (271)
T 1e0c_A            9 LVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLG   55 (271)
T ss_dssp             SEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCC
T ss_pred             ceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCCEECCHHHhccC
Confidence            46999999999854 58999999999999999999999999887654

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=98.62  E-value=2.1e-08  Score=71.75  Aligned_cols=42  Identities=21%  Similarity=0.288  Sum_probs=38.0

Q ss_pred             CccCHHHHHHHHh--CCCEEEeeCChhhhhc-CCC------CCceeeCCCC
Q 032868           73 TSVPVRVAHELLQ--AGHRYLDVRTPEEFSA-GHA------TGAINVPYMD  114 (131)
Q Consensus        73 ~~Is~~el~~l~~--~~~~LIDVRep~E~~~-ghI------pgAi~IPl~~  114 (131)
                      ..|+++++.++++  .+.+|||||++.||+. |||      |||+|||+..
T Consensus         5 ~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~   55 (148)
T 2fsx_A            5 GDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWAT   55 (148)
T ss_dssp             EEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBC
T ss_pred             ccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeec
Confidence            4699999999886  3689999999999997 999      9999999987

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=98.61  E-value=2.4e-08  Score=77.75  Aligned_cols=55  Identities=27%  Similarity=0.410  Sum_probs=43.1

Q ss_pred             ccCHHHHHHHHh----CCCEEEeeCChhhhh----------------cCCCCCceeeCCCCCCCCcccCCCchhh
Q 032868           74 SVPVRVAHELLQ----AGHRYLDVRTPEEFS----------------AGHATGAINVPYMDDKEPEICGGSIDSF  128 (131)
Q Consensus        74 ~Is~~el~~l~~----~~~~LIDVRep~E~~----------------~ghIpgAi~IPl~~i~~~~~~~~~~~~f  128 (131)
                      .|+++++.++++    ++..|||||++.||.                .||||||+|||+..+.+.+..-+++++|
T Consensus       147 ~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l  221 (285)
T 1uar_A          147 RAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEEL  221 (285)
T ss_dssp             EECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHH
T ss_pred             EEcHHHHHHHHhhcccCCCcEEEcCCccceeeeccccccccccccccCCcCCCccccCHHHhcCCCCcCCCHHHH
Confidence            489999999884    556799999999998                8999999999998876543222344444

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=98.61  E-value=2.2e-08  Score=77.94  Aligned_cols=44  Identities=27%  Similarity=0.400  Sum_probs=39.4

Q ss_pred             ccCHHHHHHHHh-CCCEEEeeCChhhh-----------hcCCCCCceeeCCCCCCC
Q 032868           74 SVPVRVAHELLQ-AGHRYLDVRTPEEF-----------SAGHATGAINVPYMDDKE  117 (131)
Q Consensus        74 ~Is~~el~~l~~-~~~~LIDVRep~E~-----------~~ghIpgAi~IPl~~i~~  117 (131)
                      .|+++++.++++ ++.+|||||++.||           ..||||||+|||+..+.+
T Consensus       153 ~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA~nip~~~~~~  208 (280)
T 1urh_A          153 VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVR  208 (280)
T ss_dssp             BCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBS
T ss_pred             EEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCCCCCcCccCCCceEeeHHHhhc
Confidence            489999999885 46899999999999           689999999999988866

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=98.58  E-value=2.8e-08  Score=79.61  Aligned_cols=44  Identities=27%  Similarity=0.495  Sum_probs=38.7

Q ss_pred             ccCHHHHHHHHhCCCEEEeeCChhhhhc----------------CCCCCceeeCCCCCCCC
Q 032868           74 SVPVRVAHELLQAGHRYLDVRTPEEFSA----------------GHATGAINVPYMDDKEP  118 (131)
Q Consensus        74 ~Is~~el~~l~~~~~~LIDVRep~E~~~----------------ghIpgAi~IPl~~i~~~  118 (131)
                      .++.+|+.++++++ +|||||+++||..                ||||||+|||+..+.+.
T Consensus       180 ~i~~~el~~~l~~~-~liDvR~~~e~~~~~~~~~~~~~~~~~~~GhIpGA~niP~~~~~~~  239 (318)
T 3hzu_A          180 RAFRDDVLAILGAQ-PLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPWGKAADE  239 (318)
T ss_dssp             BCCHHHHHHHTTTS-CEEECSCHHHHHTSCSSCTTSCSCSCSSCSBCTTCEECCGGGGBCT
T ss_pred             cccHHHHHHhhcCC-eEEecCCHHHhcccccCccccccccCCcCcCCCCeeecCHHHhcCC
Confidence            47899999998766 8999999999997                99999999999876544

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=98.57  E-value=5.4e-09  Score=68.12  Aligned_cols=30  Identities=43%  Similarity=0.852  Sum_probs=27.0

Q ss_pred             CEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           88 HRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        88 ~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      .++||||+++||+.||||||+|||++++.+
T Consensus         2 ~~liDvR~~~e~~~ghIpgA~~ip~~~l~~   31 (85)
T 2jtq_A            2 EHWIDVRVPEQYQQEHVQGAINIPLKEVKE   31 (85)
T ss_dssp             EEEEECSCHHHHTTEEETTCEECCHHHHHH
T ss_pred             CEEEECCCHHHHHhCCCCCCEEcCHHHHHH
Confidence            579999999999999999999999876643

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.55  E-value=1.7e-08  Score=85.82  Aligned_cols=50  Identities=26%  Similarity=0.486  Sum_probs=44.5

Q ss_pred             cCCCCccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           69 VGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        69 ~~~~~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ....+.|+++++.++++++.+|||||++.||+.||||||+|||++++.+.
T Consensus       485 ~~~~~~i~~~~~~~~~~~~~~~iDvR~~~e~~~ghi~ga~~ip~~~l~~~  534 (588)
T 3ics_A          485 DGFVDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIPLDELRDR  534 (588)
T ss_dssp             TTSCCEECTTTHHHHHHTTCEEEECSCGGGGGGCBCTTEEECCHHHHTTC
T ss_pred             ccccceecHHHHHHHhcCCCEEEEcCCHHHHhcCCCCCCEECCHHHHHHH
Confidence            34567899999999998889999999999999999999999999887655

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=98.52  E-value=7.1e-08  Score=75.92  Aligned_cols=46  Identities=24%  Similarity=0.308  Sum_probs=40.6

Q ss_pred             CccCHHHHHHHHhC-----CCEEEeeC--------ChhhhhcCCCCCceeeCCCCCCCC
Q 032868           73 TSVPVRVAHELLQA-----GHRYLDVR--------TPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        73 ~~Is~~el~~l~~~-----~~~LIDVR--------ep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ..|+++++++++++     +.+|||||        ++.||..||||||+|||++.+.+.
T Consensus         8 ~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~   66 (296)
T 1rhs_A            8 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDK   66 (296)
T ss_dssp             SEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCT
T ss_pred             ceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCC
Confidence            46999999999865     58999999        689999999999999999987654

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=98.48  E-value=1.1e-07  Score=66.96  Aligned_cols=44  Identities=23%  Similarity=0.356  Sum_probs=36.2

Q ss_pred             CCccCHHHHHHHHh-C-CCEEEeeCChhhhhc-CCC------CCceeeCCCCC
Q 032868           72 PTSVPVRVAHELLQ-A-GHRYLDVRTPEEFSA-GHA------TGAINVPYMDD  115 (131)
Q Consensus        72 ~~~Is~~el~~l~~-~-~~~LIDVRep~E~~~-ghI------pgAi~IPl~~i  115 (131)
                      ...|+++++.++++ + +.+|||||+++||+. +|+      |||+|||+..+
T Consensus         4 ~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~   56 (134)
T 1vee_A            4 GSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGE   56 (134)
T ss_dssp             SCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGG
T ss_pred             CCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeecccc
Confidence            45799999999886 3 589999999999986 333      79999998764

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=98.46  E-value=5.3e-08  Score=75.73  Aligned_cols=46  Identities=20%  Similarity=0.214  Sum_probs=40.1

Q ss_pred             CccCHHHHHHHHhC-CCEEEeeC----------ChhhhhcCCCCCceeeCCCCCCCC
Q 032868           73 TSVPVRVAHELLQA-GHRYLDVR----------TPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        73 ~~Is~~el~~l~~~-~~~LIDVR----------ep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ..|+++++.+++++ +.+|||||          ++.||..||||||+|+|+..+.+.
T Consensus         4 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~   60 (280)
T 1urh_A            4 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDH   60 (280)
T ss_dssp             CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCS
T ss_pred             ceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCC
Confidence            46899999998864 58999999          789999999999999999877654

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=98.46  E-value=1.4e-07  Score=74.90  Aligned_cols=47  Identities=23%  Similarity=0.246  Sum_probs=40.9

Q ss_pred             CCccCHHHHHHHHhC-----CCEEEeeC---------ChhhhhcCCCCCceeeCCCCCCCC
Q 032868           72 PTSVPVRVAHELLQA-----GHRYLDVR---------TPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        72 ~~~Is~~el~~l~~~-----~~~LIDVR---------ep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ...|+++++.+++++     +.+|||||         ++.||..||||||+|||++.+.+.
T Consensus        21 ~~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~   81 (302)
T 3olh_A           21 QSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDR   81 (302)
T ss_dssp             CCEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCS
T ss_pred             CCccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCc
Confidence            356999999999864     68999999         899999999999999999876544

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=98.44  E-value=8.9e-08  Score=74.25  Aligned_cols=43  Identities=35%  Similarity=0.584  Sum_probs=36.4

Q ss_pred             cCHHHHHHHHhCCCEEEeeCChhhhhc----------------CCCCCceeeCCCCCCCC
Q 032868           75 VPVRVAHELLQAGHRYLDVRTPEEFSA----------------GHATGAINVPYMDDKEP  118 (131)
Q Consensus        75 Is~~el~~l~~~~~~LIDVRep~E~~~----------------ghIpgAi~IPl~~i~~~  118 (131)
                      ++++++.++++++. |||||++.||..                ||||||+|||+..+...
T Consensus       146 ~~~~el~~~~~~~~-liDvR~~~e~~~~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~  204 (277)
T 3aay_A          146 AFRDEVLAAINVKN-LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANE  204 (277)
T ss_dssp             ECHHHHHHTTTTSE-EEECSCHHHHHTSCCC-----CCCCSCCSBCTTCEECCGGGGBCT
T ss_pred             cCHHHHHHhcCCCC-EEEeCChHHeeeeecccccccccccccCCcCCCceecCHHHhcCC
Confidence            77899999886544 999999999985                99999999999866443

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=98.44  E-value=7e-08  Score=74.83  Aligned_cols=43  Identities=23%  Similarity=0.351  Sum_probs=37.9

Q ss_pred             ccCHHHHHHHHhC-CCEEEeeCC-hhhhhcCCCCCceeeCCCCCC
Q 032868           74 SVPVRVAHELLQA-GHRYLDVRT-PEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        74 ~Is~~el~~l~~~-~~~LIDVRe-p~E~~~ghIpgAi~IPl~~i~  116 (131)
                      .|+++++.+++++ +.+|||||+ +.||..||||||+|||+..+.
T Consensus         7 ~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~   51 (277)
T 3aay_A            7 LVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDL   51 (277)
T ss_dssp             EECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTCEEEETTTTT
T ss_pred             eEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCcEEecccccc
Confidence            5899999998865 588999999 999999999999999997643

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=98.39  E-value=8.2e-08  Score=81.77  Aligned_cols=47  Identities=28%  Similarity=0.342  Sum_probs=40.9

Q ss_pred             CCccCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           72 PTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        72 ~~~Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      +..|+++++.+++++   +.+|||||++.||+.||||||+|||++++...
T Consensus       264 ~~~is~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~  313 (539)
T 1yt8_A          264 VERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQE  313 (539)
T ss_dssp             CEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTCEECCHHHHHHS
T ss_pred             CceECHHHHHHHHhCCCCCeEEEECCCHHHHhcCCCCCCEeCCHHHHHHH
Confidence            568999999999864   57999999999999999999999998766543

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=98.37  E-value=9.2e-08  Score=79.69  Aligned_cols=61  Identities=20%  Similarity=0.323  Sum_probs=47.0

Q ss_pred             ccchhhhccccCccc----ccCCCCccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCC
Q 032868           53 ILSFCPKASLRGNLE----AVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMD  114 (131)
Q Consensus        53 ~~~~~~~c~~~~~~~----~~~~~~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~  114 (131)
                      ++......|..+...    .......|++++|+++++++ ++||||++.||..||||||+|+|++.
T Consensus       249 ~~~~~~~~N~~G~~~~~~~~~~~~~~is~~~l~~~l~~~-~iiD~R~~~~y~~ghIpGA~~i~~~~  313 (474)
T 3tp9_A          249 YFARMKLVNKVGPRLLAELGAPERVDLPPERVRAWREGG-VVLDVRPADAFAKRHLAGSLNIPWNK  313 (474)
T ss_dssp             THHHHHHHHHHCCCCHHHHCCCEECCCCGGGHHHHHHTS-EEEECSCHHHHHHSEETTCEECCSST
T ss_pred             cHHHHHhhhccCcccccccccCCCceeCHHHHHHHhCCC-EEEECCChHHHhccCCCCeEEECcch
Confidence            444444555544331    13346689999999999777 99999999999999999999999874

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=98.36  E-value=1.7e-07  Score=71.17  Aligned_cols=41  Identities=34%  Similarity=0.445  Sum_probs=36.1

Q ss_pred             ccCHHHHHHHHhCCCEEEeeCChhhhhc----------CCCCCceeeCCCCCCCC
Q 032868           74 SVPVRVAHELLQAGHRYLDVRTPEEFSA----------GHATGAINVPYMDDKEP  118 (131)
Q Consensus        74 ~Is~~el~~l~~~~~~LIDVRep~E~~~----------ghIpgAi~IPl~~i~~~  118 (131)
                      .++.+++.+    +.+|||||++.||..          ||||||+|||+..+.+.
T Consensus       122 ~i~~~e~~~----~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~  172 (230)
T 2eg4_A          122 LLTADEAAR----HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSP  172 (230)
T ss_dssp             BCCHHHHHT----CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCC
T ss_pred             eeCHHHHhh----CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCCh
Confidence            578888876    678999999999998          99999999999888655

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=98.35  E-value=1.4e-07  Score=77.39  Aligned_cols=46  Identities=15%  Similarity=0.124  Sum_probs=40.4

Q ss_pred             CCccCHHHHHHHHhCCCEEEeeCC--------hhhhhcCCCCCceeeCCCC-CCCC
Q 032868           72 PTSVPVRVAHELLQAGHRYLDVRT--------PEEFSAGHATGAINVPYMD-DKEP  118 (131)
Q Consensus        72 ~~~Is~~el~~l~~~~~~LIDVRe--------p~E~~~ghIpgAi~IPl~~-i~~~  118 (131)
                      ...|+++++++++++ .+|||||+        +.||..||||||+|||++. +.+.
T Consensus        13 ~~~Is~~el~~~l~~-~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~   67 (373)
T 1okg_A           13 KVFLDPSEVADHLAE-YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKL   67 (373)
T ss_dssp             CCEECHHHHTTCGGG-SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCC
T ss_pred             CcEEcHHHHHHHcCC-cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcc
Confidence            457999999998876 89999999        6999999999999999986 7553

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=98.34  E-value=1.5e-07  Score=73.30  Aligned_cols=42  Identities=24%  Similarity=0.323  Sum_probs=37.2

Q ss_pred             CccCHHHHHHHHhC-CCEEEeeC-ChhhhhcCCCCCceeeCCCC
Q 032868           73 TSVPVRVAHELLQA-GHRYLDVR-TPEEFSAGHATGAINVPYMD  114 (131)
Q Consensus        73 ~~Is~~el~~l~~~-~~~LIDVR-ep~E~~~ghIpgAi~IPl~~  114 (131)
                      ..|+++++++++++ +.+||||| ++.||..||||||+|+|+..
T Consensus         8 ~~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA~~ip~~~   51 (285)
T 1uar_A            8 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQR   51 (285)
T ss_dssp             GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHH
T ss_pred             ceEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCCEECCchh
Confidence            36899999998865 58999999 79999999999999999863

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.33  E-value=8.5e-08  Score=80.58  Aligned_cols=48  Identities=29%  Similarity=0.488  Sum_probs=40.6

Q ss_pred             CCCCccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           70 GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        70 ~~~~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      .....|+++++.++ +++.+|||||+++||+.+|||||+|||++++.+.
T Consensus       470 ~~~~~i~~~~~~~~-~~~~~~iDvR~~~e~~~~~i~ga~~ip~~~l~~~  517 (565)
T 3ntd_A          470 GDATPIHFDQIDNL-SEDQLLLDVRNPGELQNGGLEGAVNIPVDELRDR  517 (565)
T ss_dssp             TSCCEECTTTTTSC-CTTEEEEECSCGGGGGGCCCTTCEECCGGGTTTS
T ss_pred             cccceeeHHHHHhC-CCCcEEEEeCCHHHHhcCCCCCcEECCHHHHHHH
Confidence            34567888887776 5568999999999999999999999999888765

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=98.30  E-value=1.7e-07  Score=78.06  Aligned_cols=48  Identities=25%  Similarity=0.320  Sum_probs=42.1

Q ss_pred             CCCccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ....++++++.+++++ +.+|||||++.||..||||||+|+|++++.+.
T Consensus       372 ~~~~i~~~~l~~~~~~~~~~lvDvR~~~e~~~ghIpgA~~ip~~~l~~~  420 (474)
T 3tp9_A          372 SYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAH  420 (474)
T ss_dssp             CCEEECHHHHHHTTTTTCCEEEECSCHHHHHHCBCTTCEECCHHHHTTT
T ss_pred             cccccCHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHHH
Confidence            3467999999998864 58999999999999999999999999877655

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=98.29  E-value=2.6e-07  Score=78.68  Aligned_cols=46  Identities=24%  Similarity=0.198  Sum_probs=40.4

Q ss_pred             CCccCHHHHHHHHhC--CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           72 PTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        72 ~~~Is~~el~~l~~~--~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ...|+++++.+++++  +.+|||||++.||..||||||+|||++.+..
T Consensus         6 ~~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAv~ip~~~~~~   53 (539)
T 1yt8_A            6 IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLEL   53 (539)
T ss_dssp             CEEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGGHHH
T ss_pred             CcccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCCEECCHHHHHH
Confidence            457999999999863  5899999999999999999999999977654

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=98.29  E-value=2.8e-07  Score=73.73  Aligned_cols=41  Identities=17%  Similarity=0.295  Sum_probs=36.3

Q ss_pred             CccCHHHHHHHHhC-CCEEEeeCChhh-hhcCCCCCceeeCCC
Q 032868           73 TSVPVRVAHELLQA-GHRYLDVRTPEE-FSAGHATGAINVPYM  113 (131)
Q Consensus        73 ~~Is~~el~~l~~~-~~~LIDVRep~E-~~~ghIpgAi~IPl~  113 (131)
                      ..|+++++++++++ +.+|||||++.| |..||||||+|||+.
T Consensus        40 ~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGAi~ip~~   82 (318)
T 3hzu_A           40 RLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVKIDWH   82 (318)
T ss_dssp             GEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTEEECCHH
T ss_pred             ceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCCeEeCch
Confidence            35999999999854 589999999987 999999999999974

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=98.21  E-value=3.6e-07  Score=75.50  Aligned_cols=45  Identities=18%  Similarity=0.240  Sum_probs=39.1

Q ss_pred             CccCHHHHHHHHh---------CCCEEEeeC--ChhhhhcCCCCCceeeCCCCCCC
Q 032868           73 TSVPVRVAHELLQ---------AGHRYLDVR--TPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        73 ~~Is~~el~~l~~---------~~~~LIDVR--ep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ..++++++.++++         .+.+|||||  ++.||..||||||+|+|+..+..
T Consensus       124 ~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~  179 (423)
T 2wlr_A          124 QLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVES  179 (423)
T ss_dssp             GEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEE
T ss_pred             cccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhcc
Confidence            4688999998886         247899999  99999999999999999987754

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=98.19  E-value=5.9e-07  Score=74.17  Aligned_cols=40  Identities=23%  Similarity=0.223  Sum_probs=35.7

Q ss_pred             ccCHHHHHHHHhC-CCEEEeeCChhhh-----------hcCCCCCceeeCCC
Q 032868           74 SVPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYM  113 (131)
Q Consensus        74 ~Is~~el~~l~~~-~~~LIDVRep~E~-----------~~ghIpgAi~IPl~  113 (131)
                      .|+.+++.++++. +.+|||||++.||           ..||||||+|||++
T Consensus       273 ~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgAi~ip~~  324 (423)
T 2wlr_A          273 MLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAG  324 (423)
T ss_dssp             EECHHHHHTTTTCSSEEEEECSCHHHHHTSCCSSTTCCCCSEETTCEECCCC
T ss_pred             eecHHHHHHHhcCCCceEEecCchhheeeeccCCCCCCcCCCCCCccccccc
Confidence            4889999988864 4889999999999           89999999999986

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=98.14  E-value=1.2e-06  Score=66.39  Aligned_cols=30  Identities=23%  Similarity=0.369  Sum_probs=27.4

Q ss_pred             CCEEEeeCChhhhhcCCCCCceeeCCC--CCC
Q 032868           87 GHRYLDVRTPEEFSAGHATGAINVPYM--DDK  116 (131)
Q Consensus        87 ~~~LIDVRep~E~~~ghIpgAi~IPl~--~i~  116 (131)
                      +.+|||||++.||..||||||+|+|+.  .+.
T Consensus         6 ~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~   37 (230)
T 2eg4_A            6 DAVLVDTRPRPAYEAGHLPGARHLDLSAPKLR   37 (230)
T ss_dssp             TCEEEECSCHHHHHHCBCTTCEECCCCSCCCC
T ss_pred             CEEEEECCChhhHhhCcCCCCEECCccchhcc
Confidence            489999999999999999999999998  554

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=98.03  E-value=1.6e-06  Score=71.20  Aligned_cols=32  Identities=31%  Similarity=0.565  Sum_probs=28.8

Q ss_pred             hCCCEEEeeCChhhhh-----------cCCCCCceeeCCCCCC
Q 032868           85 QAGHRYLDVRTPEEFS-----------AGHATGAINVPYMDDK  116 (131)
Q Consensus        85 ~~~~~LIDVRep~E~~-----------~ghIpgAi~IPl~~i~  116 (131)
                      +++.+|||||++.||.           .||||||+|||+.++.
T Consensus       172 ~~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~  214 (373)
T 1okg_A          172 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHL  214 (373)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGE
T ss_pred             ccCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhh
Confidence            3457899999999999           9999999999998875

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=97.94  E-value=1.2e-06  Score=73.41  Aligned_cols=39  Identities=31%  Similarity=0.412  Sum_probs=0.0

Q ss_pred             HHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           80 AHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        80 l~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      +.+++++ +.+|||||++.||+.||||||+|||+.++.++
T Consensus       379 ~~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~  418 (466)
T 3r2u_A          379 HSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLET  418 (466)
T ss_dssp             ----------------------------------------
T ss_pred             HHHHHhCCCcEEEEeCCHHHHhcCcCCCCEECCHHHHHHH
Confidence            4444433 47899999999999999999999999988765

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=97.88  E-value=9.8e-06  Score=65.79  Aligned_cols=46  Identities=26%  Similarity=0.446  Sum_probs=37.2

Q ss_pred             ccCHHHHHHHHhC-----CCEEEeeCChhhhh-----------cCCCCCceeeCCCCCCCCc
Q 032868           74 SVPVRVAHELLQA-----GHRYLDVRTPEEFS-----------AGHATGAINVPYMDDKEPE  119 (131)
Q Consensus        74 ~Is~~el~~l~~~-----~~~LIDVRep~E~~-----------~ghIpgAi~IPl~~i~~~~  119 (131)
                      .++.+++.+.+++     +++|||+|.+++|.           .||||||+|+|+..+.+.+
T Consensus       185 v~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~  246 (327)
T 3utn_X          185 IVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPE  246 (327)
T ss_dssp             EECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTT
T ss_pred             eecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCC
Confidence            3677888877754     26899999999995           5999999999998776553

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=97.61  E-value=3.3e-05  Score=64.60  Aligned_cols=29  Identities=34%  Similarity=0.728  Sum_probs=26.8

Q ss_pred             CCCEEEeeCChhhhhcCCCCCceeeCCCC
Q 032868           86 AGHRYLDVRTPEEFSAGHATGAINVPYMD  114 (131)
Q Consensus        86 ~~~~LIDVRep~E~~~ghIpgAi~IPl~~  114 (131)
                      .+.+|||||++.||+.||||||+|+|++.
T Consensus       295 ~~~~ilD~R~~~~y~~gHIpGAv~ip~~~  323 (466)
T 3r2u_A          295 TNRLTFDLRSKEAYHGGHIEGTINIPYDK  323 (466)
T ss_dssp             CCSEEEECSCHHHHHHSCCTTCEECCSST
T ss_pred             CCeEEEECCCHHHHhhCCCCCcEECCccH
Confidence            46899999999999999999999999864

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.00044  Score=56.00  Aligned_cols=48  Identities=8%  Similarity=0.046  Sum_probs=37.7

Q ss_pred             CccCHHHHHHHHhC----CCEEEeeC--------C-hhhh-hcCCCCCceeeCCCCCCCCcc
Q 032868           73 TSVPVRVAHELLQA----GHRYLDVR--------T-PEEF-SAGHATGAINVPYMDDKEPEI  120 (131)
Q Consensus        73 ~~Is~~el~~l~~~----~~~LIDVR--------e-p~E~-~~ghIpgAi~IPl~~i~~~~~  120 (131)
                      +-||+++|.+++..    .+++||.+        + ..|| +.||||||+++.++.+.+...
T Consensus        28 ~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~~~   89 (327)
T 3utn_X           28 DLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKS   89 (327)
T ss_dssp             EEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCTTS
T ss_pred             cccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCCCC
Confidence            46999999999853    27899984        4 4466 789999999999988766543

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=96.21  E-value=0.00033  Score=51.92  Aligned_cols=27  Identities=15%  Similarity=0.314  Sum_probs=23.6

Q ss_pred             CEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           88 HRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        88 ~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      .++||||+++||+    |||+|||.+.++-+
T Consensus       122 ~~liDvRe~~E~~----pgA~~iprg~lE~~  148 (168)
T 1v8c_A          122 GAVVRFREVEPLK----VGSLSIPQLRVEVE  148 (168)
T ss_dssp             TEEEEEEEEEEEE----ETTEEEEEEEEEEE
T ss_pred             eEEEECCChhhcC----CCCEEcChhHHHHh
Confidence            3899999999999    99999999877543

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=91.84  E-value=0.076  Score=37.59  Aligned_cols=40  Identities=20%  Similarity=0.224  Sum_probs=29.1

Q ss_pred             cCHHHHHHHHhCC-CEEEeeCChhh------------hhc-CCCCCceeeCCCC
Q 032868           75 VPVRVAHELLQAG-HRYLDVRTPEE------------FSA-GHATGAINVPYMD  114 (131)
Q Consensus        75 Is~~el~~l~~~~-~~LIDVRep~E------------~~~-ghIpgAi~IPl~~  114 (131)
                      ++.+++..+.+.+ ..+||+|++.|            +.. .+|.|.+|+|+..
T Consensus        30 ~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~   83 (156)
T 2f46_A           30 LTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTA   83 (156)
T ss_dssp             CCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCT
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCC
Confidence            5667777776555 68999998776            222 3588899999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	2e-17
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	7e-06
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	7e-05

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 70.3 bits (171), Expect = 2e-17
 Identities = 37/55 (67%), Positives = 41/55 (74%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEIC 121
           E   VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM+     + 
Sbjct: 2   EESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMS 56

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 7e-06
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 71  VPTSVPVRVAHELLQAGH---RYLDVRTPEEFSAGHATGAINVPYMDDKEPEICGGSID 126
           +  S  V   +E L+ G+     +D R  E + + H   AINV         +  G++ 
Sbjct: 14  MAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLP 72

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 7e-05
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMDDKEPEI 120
           +D R P E+  GH  GA+N+   ++ E  +
Sbjct: 48  IDCRYPYEYEGGHIKGAVNLHMEEEVEDFL 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.01
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	98.99
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	98.99
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	98.96
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	98.96
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	98.94
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	98.93
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	98.89
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	98.82
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	98.82
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	98.74
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	98.65
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	98.54
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	98.54
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	98.52
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	98.48
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	98.41
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	98.41
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	98.28
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	98.17

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=3.3e-11  Score=81.28  Aligned_cols=46  Identities=28%  Similarity=0.375  Sum_probs=40.6

Q ss_pred             CCccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        72 ~~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ++.|+++|+.+++++ +.+|||||++.||..||||||+|+|++++..
T Consensus         4 ~~~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~l~~   50 (108)
T d1gmxa_           4 FECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGA   50 (108)
T ss_dssp             CEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHHHHHH
T ss_pred             CCEeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCCCcccccchhHHH
Confidence            467999999999965 5999999999999999999999999876643

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.99  E-value=8.8e-11  Score=82.45  Aligned_cols=48  Identities=25%  Similarity=0.268  Sum_probs=41.9

Q ss_pred             CCCccCHHHHHHHHhC--CCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           71 VPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~--~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ..+.|++++++++++.  +.+|||||++.||+.||||||+|||.+.+...
T Consensus        22 ~~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpGAi~ip~~~l~~~   71 (136)
T d1yt8a1          22 HTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLR   71 (136)
T ss_dssp             CCCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCTTCEECCGGGHHHH
T ss_pred             CCCccCHHHHHHHHhcCCCcEEEEcCChhhccceecCCchhhhhhHHHHH
Confidence            4568999999999864  37999999999999999999999999877644

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.99  E-value=3.8e-11  Score=83.25  Aligned_cols=47  Identities=17%  Similarity=0.173  Sum_probs=41.3

Q ss_pred             CCccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        72 ~~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      ++.|+++|+.+++++ +++|||||++.||+.||||||+|||++.+.+.
T Consensus         7 v~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIpgAinip~~~~~~~   54 (132)
T d1t3ka_           7 ISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDK   54 (132)
T ss_dssp             SEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSSTT
T ss_pred             CCEECHHHHHHHHhCCCeEEEEccCHHHHHhccCcccceeeeeccccc
Confidence            467899999888865 48899999999999999999999999887654

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.2e-10  Score=78.73  Aligned_cols=45  Identities=9%  Similarity=0.166  Sum_probs=39.9

Q ss_pred             ccCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           74 SVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        74 ~Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      .|+++||.+++++   +.+|||||+++||..+|||||+|||...+...
T Consensus         2 ~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~gAinip~~~l~~~   49 (135)
T d2gwfa1           2 AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPG   49 (135)
T ss_dssp             EECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTT
T ss_pred             eECHHHHHHHHhcCCCCEEEEEecCCccccCCccCCeEEeCHHHcccc
Confidence            5899999999964   38999999999999999999999998877644

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.96  E-value=3.1e-10  Score=77.43  Aligned_cols=47  Identities=77%  Similarity=1.193  Sum_probs=41.3

Q ss_pred             CCCccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ....++++++.++++++..|||||++.||+.||||||+|+|+..+..
T Consensus         6 ~p~~i~~~~a~~l~~~g~~liDvR~~~e~~~ghi~ga~~ip~~~~~~   52 (119)
T d1tq1a_           6 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGA   52 (119)
T ss_dssp             CCEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCST
T ss_pred             CCCccCHHHHHHHHHCcCEEEECCCHHHHHcCCCCCccchhhccccc
Confidence            34679999999999888889999999999999999999999876543

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.7e-10  Score=82.05  Aligned_cols=59  Identities=19%  Similarity=0.265  Sum_probs=45.1

Q ss_pred             chhhhccccCcccccCCCCccCHHHHHHHHhC-------CCEEEeeCChhhhhcCCCCCceeeCCC
Q 032868           55 SFCPKASLRGNLEAVGVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYM  113 (131)
Q Consensus        55 ~~~~~c~~~~~~~~~~~~~~Is~~el~~l~~~-------~~~LIDVRep~E~~~ghIpgAi~IPl~  113 (131)
                      ||...|+.+.-.......+.|+++++.+++++       +++|||||++.||+.|||+||+|+|..
T Consensus         5 ~~~~~~~~~~v~~~~~~~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~~   70 (161)
T d1c25a_           5 DFSKGYLFHTVAGKHQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHME   70 (161)
T ss_dssp             TSSSBCSSCCBCCSCTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH
T ss_pred             cccccccCCccCcCCCCCCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCcH
Confidence            34555554432223345678999999999863       389999999999999999999999953

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.94  E-value=1.6e-10  Score=76.23  Aligned_cols=43  Identities=23%  Similarity=0.226  Sum_probs=37.1

Q ss_pred             ccCHHHHHHHHh-C-CCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868           74 SVPVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        74 ~Is~~el~~l~~-~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      .+|.+|+++++. + +++|||||++.||+.||||||+|+|...+.
T Consensus         3 v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAi~~~~~~~~   47 (101)
T d1yt8a2           3 VRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLE   47 (101)
T ss_dssp             EECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGGHH
T ss_pred             cCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCCCcccccccchh
Confidence            468899998873 3 589999999999999999999999987654

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.93  E-value=1.7e-10  Score=78.85  Aligned_cols=45  Identities=18%  Similarity=0.169  Sum_probs=39.7

Q ss_pred             ccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           74 SVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        74 ~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      -|++++|++++++ +++|||||+++||+.||||||+|+|...+...
T Consensus        10 lIs~~el~~~l~~~~~viiDvR~~~ey~~gHIpgA~~~~~~~~~~~   55 (135)
T d1e0ca1          10 VIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLG   55 (135)
T ss_dssp             EECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCC
T ss_pred             EeeHHHHHHHhcCCCeEEEECCCHHHHhcccCccccccchhhhhhc
Confidence            4899999999865 58999999999999999999999998776544

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.89  E-value=2.9e-10  Score=79.84  Aligned_cols=46  Identities=26%  Similarity=0.455  Sum_probs=39.5

Q ss_pred             CccCHHHHHHHHhC-CCEEEeeCChhhhh--------cCCCCCceeeCCCCCCCC
Q 032868           73 TSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHATGAINVPYMDDKEP  118 (131)
Q Consensus        73 ~~Is~~el~~l~~~-~~~LIDVRep~E~~--------~ghIpgAi~IPl~~i~~~  118 (131)
                      +.++.+++.+.+++ +++|||||++.||.        .||||||+|+|+..+.+.
T Consensus        12 ~~~s~d~l~~~l~~~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~~~~~~~   66 (136)
T d1e0ca2          12 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDP   66 (136)
T ss_dssp             TBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEG
T ss_pred             ceEcHHHHHHhhCCCCeEEEECcChHHhcccccccccCCcchhHhhhhhhhhhcc
Confidence            46899999999865 58999999999996        799999999998766543

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=8.7e-10  Score=80.32  Aligned_cols=61  Identities=21%  Similarity=0.257  Sum_probs=48.0

Q ss_pred             chhhhccccCcccccCCCCccCHHHHHHHHhC-------CCEEEeeCChhhhhcCCCCCceeeCCCCC
Q 032868           55 SFCPKASLRGNLEAVGVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMDD  115 (131)
Q Consensus        55 ~~~~~c~~~~~~~~~~~~~~Is~~el~~l~~~-------~~~LIDVRep~E~~~ghIpgAi~IPl~~i  115 (131)
                      ||...+..+........++.|++++|.+++++       +++|||||++.||..|||+||+|+|...+
T Consensus         5 d~~~~~~lp~~~~~~~~~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~~~~   72 (174)
T d1ymka1           5 DYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERD   72 (174)
T ss_dssp             TSSSBCCSCCBCCSSTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHH
T ss_pred             cccccccCcccccccCCCcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCchHH
Confidence            56666665533323345678999999999964       28999999999999999999999998654

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.82  E-value=1.2e-09  Score=75.65  Aligned_cols=48  Identities=27%  Similarity=0.312  Sum_probs=41.3

Q ss_pred             CCCccCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868           71 VPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      .++.|+++++++++.+   +++|||||+++||+.||||||+|+|+.++...
T Consensus        21 ~~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghipgai~~p~~~~~~~   71 (130)
T d1yt8a4          21 GVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQE   71 (130)
T ss_dssp             TCEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTCEECCHHHHHHS
T ss_pred             CCcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccCCcccccccccccc
Confidence            3568999999999964   27899999999999999999999998766544

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.82  E-value=9.2e-10  Score=78.42  Aligned_cols=47  Identities=21%  Similarity=0.271  Sum_probs=41.0

Q ss_pred             CCCccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868           71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKE  117 (131)
Q Consensus        71 ~~~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~  117 (131)
                      ....|+++++.+++++ +.+|||||++.||+.||||||+|+|+..+..
T Consensus         3 ~~~~Is~~el~~~l~~~~~~ivDvR~~~e~~~ghIpga~~~~~~~~~~   50 (157)
T d1yt8a3           3 RADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQ   50 (157)
T ss_dssp             CCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGGGHHH
T ss_pred             CCCEECHHHHHHHHhCCCeEEEEeCCHHHHhhcccccceecccccccc
Confidence            3467999999999965 4899999999999999999999999876543

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.74  E-value=1.9e-09  Score=76.34  Aligned_cols=56  Identities=20%  Similarity=0.323  Sum_probs=45.1

Q ss_pred             ccCHHHHHHHHhC-CCEEEeeCChhhhh------------cCCCCCceeeCCCCCCCCcccCCCchhhc
Q 032868           74 SVPVRVAHELLQA-GHRYLDVRTPEEFS------------AGHATGAINVPYMDDKEPEICGGSIDSFS  129 (131)
Q Consensus        74 ~Is~~el~~l~~~-~~~LIDVRep~E~~------------~ghIpgAi~IPl~~i~~~~~~~~~~~~f~  129 (131)
                      -++.+|+.+.+++ +++|||+|++.||.            .||||||+|+|+..+......-+++++++
T Consensus        12 i~~~~ev~~~l~~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~~~~~~~~~~~~~~~~l~   80 (144)
T d1rhsa2          12 LKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELR   80 (144)
T ss_dssp             EECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHH
T ss_pred             eecHHHHHHHhcCCCcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcchhhhhhhhcccCCHHHHH
Confidence            4788999888854 69999999999995            69999999999988776655446666654

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=98.65  E-value=7.2e-09  Score=73.10  Aligned_cols=45  Identities=31%  Similarity=0.568  Sum_probs=36.4

Q ss_pred             hCCCEEEeeCChhhhh----------------cCCCCCceeeCCCCCCCCcccCCCchhhc
Q 032868           85 QAGHRYLDVRTPEEFS----------------AGHATGAINVPYMDDKEPEICGGSIDSFS  129 (131)
Q Consensus        85 ~~~~~LIDVRep~E~~----------------~ghIpgAi~IPl~~i~~~~~~~~~~~~f~  129 (131)
                      +++.+|||||+++||.                .||||||+|+|+..+.+.+..-+++++|+
T Consensus        18 ~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~~~~~~~~~~~~~~~~~~   78 (141)
T d1uara2          18 EGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELR   78 (141)
T ss_dssp             TTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHH
T ss_pred             CCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCccccccccccccccccccHHHHH
Confidence            3568999999999996                79999999999988776655556666664

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.1e-08  Score=71.83  Aligned_cols=43  Identities=28%  Similarity=0.274  Sum_probs=36.8

Q ss_pred             CccCHHHHHHHHh---CCCEEEeeCChhhhhcCCCCCceeeCCCCC
Q 032868           73 TSVPVRVAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMDD  115 (131)
Q Consensus        73 ~~Is~~el~~l~~---~~~~LIDVRep~E~~~ghIpgAi~IPl~~i  115 (131)
                      .+++++++++.++   .+++|||||.+.||+.||||||+|+|+..+
T Consensus        16 ~~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~gAini~~~~~   61 (154)
T d1hzma_          16 ISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGI   61 (154)
T ss_dssp             SBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSH
T ss_pred             CccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCCCCcccCcHHH
Confidence            3588889988884   248999999999999999999999997544

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=98.54  E-value=5.7e-09  Score=73.49  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=35.0

Q ss_pred             ccCHHHHHHHHhC-CCEEEeeCC-hhhhhcCCCCCceeeCCC
Q 032868           74 SVPVRVAHELLQA-GHRYLDVRT-PEEFSAGHATGAINVPYM  113 (131)
Q Consensus        74 ~Is~~el~~l~~~-~~~LIDVRe-p~E~~~ghIpgAi~IPl~  113 (131)
                      -|++++|++.+++ +++|||||+ +.+|..||||||+|+++.
T Consensus         8 lVs~~~l~~~l~~~~v~iiDvr~~~~~y~~gHIPgAi~~~~~   49 (143)
T d1uara1           8 LVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQ   49 (143)
T ss_dssp             EECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHH
T ss_pred             cCcHHHHHHHhCCCCeEEEECCCCHHHHhcCCCCCccccccc
Confidence            4899999998865 589999995 788999999999999874

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=98.52  E-value=3.7e-08  Score=68.73  Aligned_cols=49  Identities=20%  Similarity=0.152  Sum_probs=41.2

Q ss_pred             CCCCccCHHHHHHHHhC--CCEEEeeCChhhhhcCC---CCCceeeCCCCCCCC
Q 032868           70 GVPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGH---ATGAINVPYMDDKEP  118 (131)
Q Consensus        70 ~~~~~Is~~el~~l~~~--~~~LIDVRep~E~~~gh---IpgAi~IPl~~i~~~  118 (131)
                      ..+..|+++|+.+++.+  +++|||||++.||+.+|   |+|++|+|++.+...
T Consensus        20 ~~~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~~a~~ip~~~l~~~   73 (137)
T d1qxna_          20 ADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPL   73 (137)
T ss_dssp             HSSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHH
T ss_pred             ccCCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhccccccccccCCccccccc
Confidence            35678999999999853  49999999999999988   677999999887543

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=2.2e-08  Score=70.64  Aligned_cols=45  Identities=20%  Similarity=0.244  Sum_probs=37.8

Q ss_pred             ccCHHHHHHHHhC-CCEEEeeC----------ChhhhhcCCCCCceeeCCCCCCCC
Q 032868           74 SVPVRVAHELLQA-GHRYLDVR----------TPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        74 ~Is~~el~~l~~~-~~~LIDVR----------ep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      -|++++|++.+++ +++|||||          ..++|..||||||+|++...+.+.
T Consensus         4 lVs~~wL~~~L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~   59 (147)
T d1urha1           4 FVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDH   59 (147)
T ss_dssp             EECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCS
T ss_pred             cCcHHHHHHHhCCCCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccc
Confidence            3899999998865 58999999          356899999999999998776554

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=9.4e-08  Score=64.08  Aligned_cols=54  Identities=24%  Similarity=0.321  Sum_probs=40.2

Q ss_pred             ccCHHHHHHHHh-CCCEEEeeCChhhhh-----------cCCCCCceeeCCCCCCCCcccCCCchhh
Q 032868           74 SVPVRVAHELLQ-AGHRYLDVRTPEEFS-----------AGHATGAINVPYMDDKEPEICGGSIDSF  128 (131)
Q Consensus        74 ~Is~~el~~l~~-~~~~LIDVRep~E~~-----------~ghIpgAi~IPl~~i~~~~~~~~~~~~f  128 (131)
                      .++.+|+....+ ++.+|||+|+++||.           .|||||++|+|...+.... .-++.+++
T Consensus         5 ~~~~~ev~~~~~~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~~-~~~~~~~~   70 (120)
T d1urha2           5 VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREG-ELKTTDEL   70 (120)
T ss_dssp             BCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSS-SBCCHHHH
T ss_pred             HccHHHHHHHhhCCCcEEEeCCCHHHcCcccCCcccccccccccccchhchhhccccc-ccCCHHHh
Confidence            367888877765 468999999999995           7999999999987654432 22444444

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.41  E-value=1.1e-07  Score=67.19  Aligned_cols=45  Identities=24%  Similarity=0.310  Sum_probs=38.3

Q ss_pred             ccCHHHHHHHHhC-----CCEEEeeC--------ChhhhhcCCCCCceeeCCCCCCCC
Q 032868           74 SVPVRVAHELLQA-----GHRYLDVR--------TPEEFSAGHATGAINVPYMDDKEP  118 (131)
Q Consensus        74 ~Is~~el~~l~~~-----~~~LIDVR--------ep~E~~~ghIpgAi~IPl~~i~~~  118 (131)
                      -|++++|+++++.     ++.|||||        ..++|..||||||+|++++.+...
T Consensus         9 lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~   66 (149)
T d1rhsa1           9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDK   66 (149)
T ss_dssp             EECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCT
T ss_pred             ccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhccc
Confidence            4899999999863     48999999        467899999999999999877654

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=98.28  E-value=5.9e-08  Score=67.88  Aligned_cols=32  Identities=31%  Similarity=0.565  Sum_probs=27.5

Q ss_pred             hCCCEEEeeCChhhhh-----------cCCCCCceeeCCCCCC
Q 032868           85 QAGHRYLDVRTPEEFS-----------AGHATGAINVPYMDDK  116 (131)
Q Consensus        85 ~~~~~LIDVRep~E~~-----------~ghIpgAi~IPl~~i~  116 (131)
                      ..+.+|||+|+++||.           .||||||+|+|+..+.
T Consensus        10 ~p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~~~~~   52 (139)
T d1okga2          10 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHL   52 (139)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGE
T ss_pred             CCCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccchhhc
Confidence            3468899999999997           7999999999986554

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=98.17  E-value=3.2e-07  Score=65.83  Aligned_cols=42  Identities=17%  Similarity=0.187  Sum_probs=35.6

Q ss_pred             ccCHHHHHHHHhCCCEEEeeC--------ChhhhhcCCCCCceeeCCCCCC
Q 032868           74 SVPVRVAHELLQAGHRYLDVR--------TPEEFSAGHATGAINVPYMDDK  116 (131)
Q Consensus        74 ~Is~~el~~l~~~~~~LIDVR--------ep~E~~~ghIpgAi~IPl~~i~  116 (131)
                      -|++++|.+.+++ +.|||+|        ...+|..||||||++++++...
T Consensus         9 lvs~~~L~~~l~d-~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l   58 (156)
T d1okga1           9 FLDPSEVADHLAE-YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNL   58 (156)
T ss_dssp             EECHHHHTTCGGG-SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTS
T ss_pred             EeCHHHHHHhcCC-CEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhc
Confidence            5899999887754 8999999        5789999999999999986543