Citrus Sinensis ID: 032908

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MALAPATVKLLKFGFGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPMLSMSFDEEEGEGPEGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHccccEEEHHHHHccccccccccccccccccccccccccccccccccHHHHccc
Coil and Loop (DISEMBL)
MALAPATVKLLKFGFGLMLMHMISMNLLHVEAQVAVDESRLELMSDAlewpmlsmsfdeeegegpegeggrrSLFWQRMKYYISYGalsanripcpprsgrsyytpncykargpvhpytrgcsvitrcrr
Flexible Loop (DISEMBL)
MALAPATVKLLKFGFGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPMLSMSfdeeegegpegeggrrsLFWQRMKYYISYGalsanripcpprSGRSYYTPncykargpvhpytrgcsvitrcrr
Low Complexity Region (SEG)
MALAPATVKLLKFGFGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPMLSMSFDeeegegpegeggRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR
Disordered region (IsUnstruct)
*****ATVKLLKFGFGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWP*********************SLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITR***
Disordered Region (DISOPRED)
******T***LKFGFGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWP************************WQRMKYYISYGALSANRIPCP********************PYTRGCSVITRCRR
Disordered Region (DISEMBL)
MALAPATVKLLKFGFGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPMLSMSF************GRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR
Disordered Region (DISPRO)
*ALAPATVKLLKFGFGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPMLSMSFD********GEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALAPATVKLLKFGFGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPMLSMSFDEEEGEGPEGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q9FHA6	129	Protein RALF-like 34 OS=A	yes	no	0.723	0.728	0.617	4e-30
Q8L9P8	116	Protein RALF-like 33 OS=A	no	no	0.530	0.594	0.506	1e-08
Q6NME6	110	Protein RALF-like 19 OS=A	no	no	0.5	0.590	0.513	5e-08
Q9LUS7	138	Rapid alkalinization fact	no	no	0.446	0.420	0.538	1e-07
Q9MA62	119	Protein RALF-like 22 OS=A	no	no	0.361	0.394	0.568	1e-07
Q945T0	115	Rapid alkalinization fact	N/A	no	0.438	0.495	0.531	3e-07
Q9FZA0	110	Protein RALF-like 4 OS=Ar	no	no	0.792	0.936	0.36	1e-06
Q9SRY3	120	Protein RALF-like 1 OS=Ar	no	no	0.476	0.516	0.449	6e-05
A8MQI8	89	Protein RALF-like 5 OS=Ar	no	no	0.338	0.494	0.490	0.0003
Q9LK37	118	Protein RALF-like 24 OS=A	no	no	0.438	0.483	0.437	0.0009

>sp|Q9FHA6|RLF34_ARATH Protein RALF-like 34 OS=Arabidopsis thaliana GN=RALFL34 PE=2 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 74/102 (72%), Gaps = 8/102 (7%)

Query: 37  DESRLELMSDALEWPML-SMSFDEEEGEG-------PEGEGGRRSLFWQRMKYYISYGAL 88
           D   L L+ D  +WP+  S  FD  +GE         +G   RRSL+W+R KYYISYGAL
Sbjct: 28  DNPSLTLLPDGFDWPISHSDEFDIIDGEESFEVTEEDDGVTDRRSLYWRRTKYYISYGAL 87

Query: 89  SANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
           SANR+PCPPRSGRSYYT NC++ARGPVHPY+RGCS ITRCRR
Sbjct: 88  SANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCRR 129

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9P8|RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 46/77 (59%), Gaps = 8/77 (10%)

Query: 54  SMSFDEEEGEGPEGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARG 113
           S+S  EEE E  + E  RR L   +   YISYGAL  N +PC  R G SYY  NC +   
Sbjct: 48  SLSTAEEEFE-MDSEINRRILATTK---YISYGALRRNTVPCS-RRGASYY--NCRRG-A 99

Query: 114 PVHPYTRGCSVITRCRR 130
             +PY+RGCS ITRCRR
Sbjct: 100 QANPYSRGCSAITRCRR 116

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NME6|RLF19_ARATH Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 44/74 (59%), Gaps = 9/74 (12%)

Query: 60  EEGEGP---EGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVH 116
           E+GE     + E  RR L  +R   YISYGAL  N +PC  R GRSYY  +C K R   +
Sbjct: 40  EDGELDYLMDSETNRRQLAARRS--YISYGALRKNNVPCSRR-GRSYY--DC-KKRKRAN 93

Query: 117 PYTRGCSVITRCRR 130
           PY RGCSVIT C R
Sbjct: 94  PYRRGCSVITHCYR 107

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUS7|RLF23_ARATH Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 40/65 (61%), Gaps = 7/65 (10%)

Query: 66  EGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVI 125
           + E  RR L  +R   YISYGAL  N IPC  R G SYY  NC +     +PY+RGCS I
Sbjct: 80  DSEINRRILATRR---YISYGALRRNTIPCS-RRGASYY--NCRRG-AQANPYSRGCSAI 132

Query: 126 TRCRR 130
           TRCRR
Sbjct: 133 TRCRR 137

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). Regulates negatively brassinolide (BL)-mediated signaling pathway (e.g. BL-induced hypocotyl elongation and branching limitation).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA62|RLF22_ARATH Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 34/51 (66%), Gaps = 4/51 (7%)

Query: 80  KYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
           K YISYGA+  N +PC  R G SYY  NC +     +PY+RGCS ITRCRR
Sbjct: 73  KKYISYGAMRRNSVPCSRR-GASYY--NCQRG-AQANPYSRGCSTITRCRR 119

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945T0|RALF_TOBAC Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 38/64 (59%), Gaps = 7/64 (10%)

Query: 66  EGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVI 125
           + E  RR L     K YISYGAL  N +PC  R G SYY  NC K     +PY+RGCS I
Sbjct: 58  DSESNRRIL---ATKKYISYGALQKNSVPCS-RRGASYY--NC-KPGAQANPYSRGCSAI 110

Query: 126 TRCR 129
           TRCR
Sbjct: 111 TRCR 114

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Prevents root growth and seedling development in heterologous system.

Nicotiana tabacum (taxid: 4097)

>sp|Q9FZA0|RLF4_ARATH Protein RALF-like 4 OS=Arabidopsis thaliana GN=RALFL4 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 60/125 (48%), Gaps = 22/125 (17%)

Query: 8   VKLLKFGFGLMLMHMI--SMNLLHVEAQVAVDESRLELMSDALEWPMLSMSFDEEEGEGP 65
           VK+L   FGL+++ M+  S+N  +   +  ++        D LE  M             
Sbjct: 3   VKMLLI-FGLLILAMVAKSVNATYPLTKSCINGQGCIGEDDELESLM------------- 48

Query: 66  EGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVI 125
           + E  RR L   R + YI Y AL  N +PC  R GRSYY  +C K R   +PY RGCS I
Sbjct: 49  DSETNRRQL--ARGRRYIGYDALKKNNVPCS-RRGRSYY--DC-KKRRRNNPYRRGCSAI 102

Query: 126 TRCRR 130
           T C R
Sbjct: 103 THCYR 107

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRY3|RLF1_ARATH Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 61  EGEGPEGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTR 120
           E E  + E  RR L   +   YISY +L  N +PC  R G SYY  NC       +PY+R
Sbjct: 58  EEEEMDSEINRRILATTK---YISYQSLKRNSVPCS-RRGASYY--NCQNG-AQANPYSR 110

Query: 121 GCSVITRCR 129
           GCS I RCR
Sbjct: 111 GCSKIARCR 119

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Mostly active in roots. Prevents plant growth (e.g. root and leaf length).

Arabidopsis thaliana (taxid: 3702)

>sp|A8MQI8|RLF5_ARATH Protein RALF-like 5 OS=Arabidopsis thaliana GN=RALFL5 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 7/51 (13%)

Query: 80  KYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
           K YI Y     +  PC PR    + TP+CYK R P +PY RGC+ I+RCRR
Sbjct: 26  KRYIEYPPWQKH--PCNPR----FPTPDCYK-RTPANPYRRGCTCISRCRR 69

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK37|RLF24_ARATH Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 67  GEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVIT 126
            E  RR +  +  K YISY  L  + +PC  + G SYY   C    G  + Y RGCSVIT
Sbjct: 55  SEISRRVMMMR--KQYISYETLRRDMVPCQ-KPGASYYA--CRS--GQANAYNRGCSVIT 107

Query: 127 RCRR 130
           RC R
Sbjct: 108 RCAR 111

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
356541805	121	PREDICTED: uncharacterized protein LOC10	0.784	0.842	0.689	1e-35
225438734	125	PREDICTED: uncharacterized protein LOC10	0.876	0.912	0.615	3e-35
351726381	128	uncharacterized protein LOC100527368 pre	0.769	0.781	0.699	5e-33
357482877	128	hypothetical protein MTR_5g017160 [Medic	0.769	0.781	0.650	2e-32
224081659	134	predicted protein [Populus trichocarpa]	0.907	0.880	0.511	6e-30
224096754	131	predicted protein [Populus trichocarpa]	0.884	0.877	0.541	3e-29
388518247	127	unknown [Lotus japonicus]	0.761	0.779	0.657	8e-29
388503074	174	unknown [Lotus japonicus]	0.730	0.545	0.663	3e-28
15240191	129	protein ralf-like 34 [Arabidopsis thalia	0.723	0.728	0.617	3e-28
297797669	128	hypothetical protein ARALYDRAFT_920006 [	0.723	0.734	0.643	6e-28

>gi|356541805|ref|XP_003539363.1| PREDICTED: uncharacterized protein LOC100305899 [Glycine max]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 81/103 (78%), Gaps = 1/103 (0%)

Query: 29  HVEAQVAVDESRLELMSDALEWPMLSMSFDEEEG-EGPEGEGGRRSLFWQRMKYYISYGA 87
           HV  Q  ++++   LMSDALEWP     +DE++  E  E    RRSLFW+RMKYYISYGA
Sbjct: 19  HVAVQAHMEDTAFNLMSDALEWPTTMSLYDEDDAQEDVENAYSRRSLFWRRMKYYISYGA 78

Query: 88  LSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
           LSANRIPCPPRSGRSYYT NCY+ARGPVHPY+RGCS ITRCRR
Sbjct: 79  LSANRIPCPPRSGRSYYTHNCYRARGPVHPYSRGCSAITRCRR 121

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438734|ref|XP_002282668.1| PREDICTED: uncharacterized protein LOC100264539 [Vitis vinifera] gi|296082412|emb|CBI21417.3| unnamed protein product [Vitis vinifera]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 89/117 (76%), Gaps = 3/117 (2%)

Query: 17  LMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPM---LSMSFDEEEGEGPEGEGGRRS 73
           L+++    + + +V     VDES L+L++D+LEWP    L   F +E+GE P+G   RRS
Sbjct: 9   LLVLCAFFVYISNVVVVAQVDESSLKLITDSLEWPSTMSLYNEFGDEDGEDPDGVIDRRS 68

Query: 74  LFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
           +FW RM+YYISYGALSANRIPCPPRSGRSYYT NC++ARGPV PYTRGCS ITRCRR
Sbjct: 69  MFWHRMRYYISYGALSANRIPCPPRSGRSYYTHNCFQARGPVRPYTRGCSTITRCRR 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726381|ref|NP_001235077.1| uncharacterized protein LOC100527368 precursor [Glycine max] gi|255632191|gb|ACU16454.1| unknown [Glycine max]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 84/103 (81%), Gaps = 3/103 (2%)

Query: 30  VEAQVAVDESRLELMSDALEWPMLSMSFDEEEGEGPEGEGG--RRSLFWQRMKYYISYGA 87
           V  Q  ++E+ L LMS+ALEWP  +MS  +E+ E  + + G  RRSLFW+RMKYYISYGA
Sbjct: 27  VGVQAQMEETGLNLMSEALEWPT-AMSLYDEDSEEEDVQNGYSRRSLFWRRMKYYISYGA 85

Query: 88  LSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
           LSANRIPCPPRSGRSYYT NCY+ARGPVHPY+RGCSVITR RR
Sbjct: 86  LSANRIPCPPRSGRSYYTHNCYRARGPVHPYSRGCSVITRYRR 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482877|ref|XP_003611725.1| hypothetical protein MTR_5g017160 [Medicago truncatula] gi|355513060|gb|AES94683.1| hypothetical protein MTR_5g017160 [Medicago truncatula] gi|388498130|gb|AFK37131.1| unknown [Medicago truncatula]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 79/106 (74%), Gaps = 6/106 (5%)

Query: 29  HVEAQVAVDESRLELMSDALEWPM----LSMSFDEEEGEGPEGEGGRRSLFWQRMKYYIS 84
           HV+AQ+  +E  L L+SD LEWP     L    +E+  E  + +  RRSLFW R+KYYIS
Sbjct: 25  HVDAQI--EEPTLNLISDTLEWPTTMSSLYNDLEEDNEEDTDSDFSRRSLFWSRVKYYIS 82

Query: 85  YGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
           YGALSANRIPCPPRSGRSYYT  CY+ARGPVHPY RGCS ITRCRR
Sbjct: 83  YGALSANRIPCPPRSGRSYYTHKCYEARGPVHPYYRGCSAITRCRR 128

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081659|ref|XP_002306471.1| predicted protein [Populus trichocarpa] gi|118483393|gb|ABK93597.1| unknown [Populus trichocarpa] gi|222855920|gb|EEE93467.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 67/131 (51%), Positives = 85/131 (64%), Gaps = 13/131 (9%)

Query: 11  LKFGFGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPMLSMSFDE----------- 59
           L++ F   +  ++ +       Q  VDE+ L+ M DALEWPM SM +DE           
Sbjct: 6   LQYHFAFFIFFLV-IASFSPRIQAQVDETSLKAMRDALEWPM-SMYYDESSGLNDGLVGF 63

Query: 60  EEGEGPEGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYT 119
           ++G   + E  RRSLFW+R  YYISYGALSANRIPCP RSGRSYY+ NC+ +R PV+PY+
Sbjct: 64  DDGVVDDEESSRRSLFWRRTHYYISYGALSANRIPCPARSGRSYYSHNCFASRAPVNPYS 123

Query: 120 RGCSVITRCRR 130
           RGCS I RCRR
Sbjct: 124 RGCSRIARCRR 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096754|ref|XP_002310722.1| predicted protein [Populus trichocarpa] gi|118482828|gb|ABK93330.1| unknown [Populus trichocarpa] gi|222853625|gb|EEE91172.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 84/131 (64%), Gaps = 16/131 (12%)

Query: 11  LKFGFGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPMLSMSFDE----------- 59
           L+  F L+++            Q  VDE+ L+ M DALEWPM SM FDE           
Sbjct: 6   LQHYFTLLIVLFTIFLAFSPRIQAQVDETSLKAMGDALEWPM-SMYFDESSELDGGLVDL 64

Query: 60  EEGEGPEGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYT 119
           ++GE    E  RRSL W R  YYISYGALSANRIPCP RSGRSYY+ NC+K+R PV+PY+
Sbjct: 65  DDGE----ETSRRSLLWTRTHYYISYGALSANRIPCPARSGRSYYSHNCFKSRIPVNPYS 120

Query: 120 RGCSVITRCRR 130
           RGCS ITRCRR
Sbjct: 121 RGCSRITRCRR 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518247|gb|AFK47185.1| unknown [Lotus japonicus]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 84/108 (77%), Gaps = 9/108 (8%)

Query: 30  VEAQVAVDESRLELMSDA-LEWPMLSMSF------DEEEGEGPEGEGGRRSLFWQRMKYY 82
           V+AQ+  DE+ L+LMSDA LEWP  +MS       +E+  +  E    RRS FW+R+KYY
Sbjct: 22  VDAQI--DETSLKLMSDAALEWPPATMSLYGNDEEEEDGEQDMENGFSRRSPFWRRVKYY 79

Query: 83  ISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
           ISYGAL ANRIPCPPRSGRSYYT +CYKARGPVHPY+RGCS+ITRCRR
Sbjct: 80  ISYGALFANRIPCPPRSGRSYYTHDCYKARGPVHPYSRGCSIITRCRR 127

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503074|gb|AFK39603.1| unknown [Lotus japonicus]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/104 (66%), Positives = 82/104 (78%), Gaps = 9/104 (8%)

Query: 30  VEAQVAVDESRLELMSDA-LEWPMLSMSF------DEEEGEGPEGEGGRRSLFWQRMKYY 82
           V+AQ+  DE+ L+LMSDA LEWP  +MS       +E+  +  E    RRSLFW+R+KYY
Sbjct: 22  VDAQI--DETSLKLMSDAALEWPPATMSLYDNDEEEEDGEQDMENGFSRRSLFWRRVKYY 79

Query: 83  ISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVIT 126
           ISYGALSANRIPCPPRSGRSYYT +CYKARGPVHPY+RGCS+IT
Sbjct: 80  ISYGALSANRIPCPPRSGRSYYTHDCYKARGPVHPYSRGCSIIT 123

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240191|ref|NP_201508.1| protein ralf-like 34 [Arabidopsis thaliana] gi|75170583|sp|Q9FHA6.1|RLF34_ARATH RecName: Full=Protein RALF-like 34; Flags: Precursor gi|13877899|gb|AAK44027.1|AF370212_1 unknown protein [Arabidopsis thaliana] gi|10177594|dbj|BAB10941.1| unnamed protein product [Arabidopsis thaliana] gi|22136922|gb|AAM91805.1| unknown protein [Arabidopsis thaliana] gi|332010914|gb|AED98297.1| protein ralf-like 34 [Arabidopsis thaliana]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 74/102 (72%), Gaps = 8/102 (7%)

Query: 37  DESRLELMSDALEWPML-SMSFDEEEGEG-------PEGEGGRRSLFWQRMKYYISYGAL 88
           D   L L+ D  +WP+  S  FD  +GE         +G   RRSL+W+R KYYISYGAL
Sbjct: 28  DNPSLTLLPDGFDWPISHSDEFDIIDGEESFEVTEEDDGVTDRRSLYWRRTKYYISYGAL 87

Query: 89  SANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
           SANR+PCPPRSGRSYYT NC++ARGPVHPY+RGCS ITRCRR
Sbjct: 88  SANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCRR 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797669|ref|XP_002866719.1| hypothetical protein ARALYDRAFT_920006 [Arabidopsis lyrata subsp. lyrata] gi|297312554|gb|EFH42978.1| hypothetical protein ARALYDRAFT_920006 [Arabidopsis lyrata subsp. lyrata]

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 75/101 (74%), Gaps = 7/101 (6%)

Query: 37  DESRLELMSDALEWPML-SMSFD----EEEGEGPEGEGG--RRSLFWQRMKYYISYGALS 89
           D   L L+ D  +WP+  S  FD    EE  E  E + G  RRSL+W+R KYYISYGALS
Sbjct: 28  DNPSLVLLPDGFDWPISHSDEFDIIDGEESFEVAEEDDGVDRRSLYWRRTKYYISYGALS 87

Query: 90  ANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
           ANR+PCPPRSGRSYYT NC++ARGPVHPY+RGCS ITRCRR
Sbjct: 88  ANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCRR 128

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2155553	129	RALFL34 "ralf-like 34" [Arabid	0.869	0.875	0.508	3.9e-28
TAIR|locus:2079787	119	RALFL22 "ralf-like 22" [Arabid	0.361	0.394	0.568	4.1e-10
TAIR|locus:2089323	138	RALF23 "rapid alkalinization f	0.407	0.384	0.566	4.1e-10
UNIPROTKB|Q945T0	115	RALF "Rapid alkalinization fac	0.353	0.4	0.6	5.2e-10
TAIR|locus:504955964	110	RALFL19 "ralf-like 19" [Arabid	0.415	0.490	0.566	5.2e-10
TAIR|locus:2130724	116	RALFL33 "ralf-like 33" [Arabid	0.346	0.387	0.591	6.6e-10
TAIR|locus:2032195	110	RALFL4 "ralf-like 4" [Arabidop	0.415	0.490	0.516	2e-08
TAIR|locus:2024730	120	RALF1 "rapid alkalinization fa	0.338	0.366	0.520	1.8e-07
TAIR|locus:4010713517	89	RALFL5 "RALF-like 5" [Arabidop	0.338	0.494	0.490	6.1e-07
TAIR|locus:505006366	118	RALFL24 "ralf-like 24" [Arabid	0.353	0.389	0.490	1.3e-06

TAIR|locus:2155553 RALFL34 "ralf-like 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 62/122 (50%), Positives = 79/122 (64%)

Query:    17 LMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPML-SMSFDXXXXXXXXXXXX----- 70
             L+++ +++   L     ++ D   L L+ D  +WP+  S  FD                 
Sbjct:     9 LLILSLLTFISLQRSESLS-DNPSLTLLPDGFDWPISHSDEFDIIDGEESFEVTEEDDGV 67

Query:    71 --RRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRC 128
               RRSL+W+R KYYISYGALSANR+PCPPRSGRSYYT NC++ARGPVHPY+RGCS ITRC
Sbjct:    68 TDRRSLYWRRTKYYISYGALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRC 127

Query:   129 RR 130
             RR
Sbjct:   128 RR 129

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0006949 "syncytium formation" evidence=RCA

TAIR|locus:2079787 RALFL22 "ralf-like 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 29/51 (56%), Positives = 34/51 (66%)

Query:    80 KYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
             K YISYGA+  N +PC  R G SYY  NC +     +PY+RGCS ITRCRR
Sbjct:    73 KKYISYGAMRRNSVPCS-RRGASYY--NCQRG-AQANPYSRGCSTITRCRR 119

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2089323 RALF23 "rapid alkalinization factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 34/60 (56%), Positives = 38/60 (63%)

Query:    71 RRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
             RR L  +R   YISYGAL  N IPC  R G SYY  NC +     +PY+RGCS ITRCRR
Sbjct:    85 RRILATRR---YISYGALRRNTIPCS-RRGASYY--NCRRG-AQANPYSRGCSAITRCRR 137

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

UNIPROTKB|Q945T0 RALF "Rapid alkalinization factor" [Nicotiana tabacum (taxid:4097)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 30/50 (60%), Positives = 33/50 (66%)

Query:    80 KYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCR 129
             K YISYGAL  N +PC  R G SYY  NC K     +PY+RGCS ITRCR
Sbjct:    69 KKYISYGALQKNSVPCS-RRGASYY--NC-KPGAQANPYSRGCSAITRCR 114

GO:0004871 "signal transducer activity" evidence=IDA

GO:0005179 "hormone activity" evidence=IDA

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:504955964 RALFL19 "ralf-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 34/60 (56%), Positives = 38/60 (63%)

Query:    71 RRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
             RR L  +R   YISYGAL  N +PC  R GRSYY  +C K R   +PY RGCSVIT C R
Sbjct:    54 RRQLAARRS--YISYGALRKNNVPCS-RRGRSYY--DC-KKRKRANPYRRGCSVITHCYR 107

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2130724 RALFL33 "ralf-like 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 29/49 (59%), Positives = 33/49 (67%)

Query:    82 YISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
             YISYGAL  N +PC  R G SYY  NC +     +PY+RGCS ITRCRR
Sbjct:    72 YISYGALRRNTVPCS-RRGASYY--NCRRG-AQANPYSRGCSAITRCRR 116

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2032195 RALFL4 "ralf-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 31/60 (51%), Positives = 35/60 (58%)

Query:    71 RRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
             RR L   R + YI Y AL  N +PC  R GRSYY  +C K R   +PY RGCS IT C R
Sbjct:    54 RRQL--ARGRRYIGYDALKKNNVPCS-RRGRSYY--DCKKRRRN-NPYRRGCSAITHCYR 107

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2024730 RALF1 "rapid alkalinization factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 25/48 (52%), Positives = 29/48 (60%)

Query:    82 YISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCR 129
             YISY +L  N +PC  R G SYY  NC       +PY+RGCS I RCR
Sbjct:    76 YISYQSLKRNSVPCS-RRGASYY--NCQNG-AQANPYSRGCSKIARCR 119

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:4010713517 RALFL5 "RALF-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 25/51 (49%), Positives = 31/51 (60%)

Query:    80 KYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
             K YI Y     +  PC PR    + TP+CYK R P +PY RGC+ I+RCRR
Sbjct:    26 KRYIEYPPWQKH--PCNPR----FPTPDCYK-RTPANPYRRGCTCISRCRR 69

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:505006366 RALFL24 "ralf-like 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 25/51 (49%), Positives = 29/51 (56%)

Query:    80 KYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
             K YISY  L  + +PC  + G SYY   C    G  + Y RGCSVITRC R
Sbjct:    66 KQYISYETLRRDMVPCQ-KPGASYYA--CRS--GQANAYNRGCSVITRCAR 111

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FHA6	RLF34_ARATH	No assigned EC number	0.6176	0.7230	0.7286	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
pfam05498	66	pfam05498, RALF, Rapid ALkalinization Factor (RALF	5e-21
PLN03222	119	PLN03222, PLN03222, rapid alkalinization factor 23	2e-12
PLN03221	137	PLN03221, PLN03221, rapid alkalinization factor 23	1e-11

>gnl|CDD|218610 pfam05498, RALF, Rapid ALkalinization Factor (RALF)

 Score = 79.8 bits (197), Expect = 5e-21
 Identities = 38/73 (52%), Positives = 44/73 (60%), Gaps = 7/73 (9%)

Query: 58  DEEEGEGPEGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHP 117
           +EE     +   GRR L  +R   YISYGAL  N +PC  R G SYY  NC K   P +P
Sbjct: 1   EEEALVVMDSPAGRRVLAARR---YISYGALRRNSVPCSRR-GASYY--NC-KPGAPANP 53

Query: 118 YTRGCSVITRCRR 130
           Y+RGCS ITRCRR
Sbjct: 54  YSRGCSAITRCRR 66

RALF, a 5-kDa ubiquitous polypeptide in plants, arrests root growth and development. Length = 66

>gnl|CDD|178761 PLN03222, PLN03222, rapid alkalinization factor 23-like protein; Provisional

 Score = 59.4 bits (143), Expect = 2e-12
 Identities = 39/77 (50%), Positives = 46/77 (59%), Gaps = 8/77 (10%)

Query: 54  SMSFDEEEGEGPEGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARG 113
           S+S  EEE E  + E  RR L   +   YISYGAL  N +PC  R G SYY  NC +   
Sbjct: 51  SLSTAEEEFE-MDSEINRRILATTK---YISYGALRRNTVPCS-RRGASYY--NCRRG-A 102

Query: 114 PVHPYTRGCSVITRCRR 130
             +PY+RGCS ITRCRR
Sbjct: 103 QANPYSRGCSAITRCRR 119

Length = 119

>gnl|CDD|178760 PLN03221, PLN03221, rapid alkalinization factor 23; Provisional

 Score = 57.8 bits (139), Expect = 1e-11
 Identities = 35/65 (53%), Positives = 40/65 (61%), Gaps = 7/65 (10%)

Query: 66  EGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVI 125
           + E  RR L  +R   YISYGAL  N IPC  R G SYY  NC +     +PY+RGCS I
Sbjct: 80  DSEINRRILATRR---YISYGALRRNTIPCS-RRGASYY--NCRRG-AQANPYSRGCSAI 132

Query: 126 TRCRR 130
           TRCRR
Sbjct: 133 TRCRR 137

Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
PLN03222	119	rapid alkalinization factor 23-like protein; Provi	99.96
PLN03221	137	rapid alkalinization factor 23; Provisional	99.96
PF05498	66	RALF: Rapid ALkalinization Factor (RALF) ; InterPr	99.93

>PLN03222 rapid alkalinization factor 23-like protein; Provisional

Probab=99.96  E-value=1.8e-31  Score=200.24  Aligned_cols=75  Identities=47%  Similarity=0.772  Sum_probs=65.1

Q ss_pred             cCccccccccc---ccCCCCCccccccccccccccceeccccccCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcc
Q 032908           49 EWPMLSMSFDE---EEGEGPEGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVI  125 (130)
Q Consensus        49 ~~~~~~~~~~~---~ee~~m~se~~RR~L~~~~~~kYIsYgAL~rd~vPC~pr~G~SYy~~nC~kp~~pANPYsRGCs~I  125 (130)
                      ++-+++.+|.+   |||++||||++||+|+   +++|||||||++|++||+ ++|+|||  ||+ +++|+|||+|||++|
T Consensus        42 ~C~Gsi~EC~~~~~e~e~~mdSe~sRR~L~---~~rYISYgALrrd~vPCs-rrG~SYy--nC~-~~~~ANPY~RGCs~I  114 (119)
T PLN03222         42 KCNGTIAECSLSTAEEEFEMDSEINRRILA---TTKYISYGALRRNTVPCS-RRGASYY--NCR-RGAQANPYSRGCSAI  114 (119)
T ss_pred             cCCCCHHHhhcccccchhccccHHHHHHHh---hcCeecHHHhcCCCCCCC-CCCCCcc--ccC-CCCCCCCCCCCchhh
Confidence            35677878754   3445999999999998   469999999999999999 5799999  996 478999999999999


Q ss_pred             cccCC
Q 032908          126 TRCRR  130 (130)
Q Consensus       126 tRCRR  130 (130)
                      |||||
T Consensus       115 TrCrR  119 (119)
T PLN03222        115 TRCRR  119 (119)
T ss_pred             ccccC
Confidence            99997

>PLN03221 rapid alkalinization factor 23; Provisional

Probab=99.96  E-value=4.1e-30  Score=196.52  Aligned_cols=61  Identities=56%  Similarity=1.012  Sum_probs=56.1

Q ss_pred             CCCCccccccccccccccceeccccccCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccccCC
Q 032908           63 EGPEGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR  130 (130)
Q Consensus        63 ~~m~se~~RR~L~~~~~~kYIsYgAL~rd~vPC~pr~G~SYy~~nC~kp~~pANPYsRGCs~ItRCRR  130 (130)
                      ..||||++||+|+   +++||||+||++|++||+ ++|+|||  ||++ ++|+|||+|||++||||||
T Consensus        77 ~~MdSE~sRR~L~---~~rYISYgALrrd~vPCs-rrG~SYy--nC~~-~~pANPY~RGCs~ITRCrR  137 (137)
T PLN03221         77 FEMDSEINRRILA---TRRYISYGALRRNTIPCS-RRGASYY--NCRR-GAQANPYSRGCSAITRCRR  137 (137)
T ss_pred             hhcccHHHHHHHh---cCCccCHHHhccCCCCCC-CCCCCcc--ccCC-CCCCCCCCCCcccccccCC
Confidence            3899999999998   468999999999999999 5699999  9964 7899999999999999997

>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development

Probab=99.93  E-value=2.8e-27  Score=160.83  Aligned_cols=65  Identities=58%  Similarity=1.035  Sum_probs=57.9

Q ss_pred             cccCCCCCccccccccccccccceeccccccCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccccCC
Q 032908           59 EEEGEGPEGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR  130 (130)
Q Consensus        59 ~~ee~~m~se~~RR~L~~~~~~kYIsYgAL~rd~vPC~pr~G~SYy~~nC~kp~~pANPYsRGCs~ItRCRR  130 (130)
                      ||+++.|+++++||+|++   ++|||||||++|.+||+ .+|.|||  ||. +++|+|||+|||++||||||
T Consensus         2 ee~~~~~~s~~~~R~~a~---~~yIsYgaL~~~~~pc~-~~g~~~~--~c~-~~~paNpY~RGC~~~~rCrr   66 (66)
T PF05498_consen    2 EEEEVVMESEASRRILAA---RRYISYGALRRDRVPCS-PRGCSYY--NCC-PRQPANPYSRGCSKITRCRR   66 (66)
T ss_pred             hhHHhhhhhHHHHHHHhc---CCeecchhccCCCCCCC-cccCCCc--ccC-CCCCCCCCCCCCCccccCCC
Confidence            345569999999999984   48999999999999999 4699999  884 58999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00