Citrus Sinensis ID: 032928

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVIFSVNSFTL
Secondary Structure (PSIPRED)
ccccccHHHccHHHHHccccccccHHHHcccccccccccccccccEEEEEccEEEEcccHHHHHHcccEEEEEccccccEEEccccEEEEEEEEEccEEcccccEEEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcccccccccccHHHHHcccccccccEEccccEEEEEEccEEEEEEcHHHHHHHccEEEEEccccccEEcEccEEEEEEEcccEEEEEEcccEEEEEEccHHHHcccHHEEEEccccc
Coil and Loop (DISEMBL)
MALRMWASSTANALRISCAsktpafalSRCFSSVLDGlkyasshewvkhegsvatVGITDHAQDHLGEVVFVElpetgasvkqgggfGVVESVkatsdvnspisgeVIEVNtkltetpglvIFSVNSFTL
Flexible Loop (DISEMBL)
MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVkatsdvnspisGEVIEVntkltetpglvifsvnsftl
Low Complexity Region (SEG)
MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVIFSVNSFTL
Disordered region (IsUnstruct)
*********TANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVIFSVN****
Disordered Region (DISOPRED)
************************FALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVIF*******
Disordered Region (DISEMBL)
***********NALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVIFSVNSFTL
Disordered Region (DISPRO)
*****WASS***ALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVIFSVNSFTL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVIFSVNSFTL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
P49360	152	Glycine cleavage system H	N/A	no	0.930	0.796	0.809	6e-53
Q39732	162	Glycine cleavage system H	N/A	no	0.930	0.746	0.801	2e-52
P49359	162	Glycine cleavage system H	N/A	no	0.930	0.746	0.793	7e-52
A3C6G9	164	Glycine cleavage system H	yes	no	0.930	0.737	0.766	7e-51
A2Z9B8	164	Glycine cleavage system H	N/A	no	0.930	0.737	0.766	7e-51
P46485	165	Glycine cleavage system H	N/A	no	0.930	0.733	0.780	2e-49
P16048	165	Glycine cleavage system H	N/A	no	0.930	0.733	0.798	7e-49
P93255	163	Glycine cleavage system H	N/A	no	0.923	0.736	0.758	1e-47
Q9LQL0	166	Probable glycine cleavage	yes	no	0.930	0.728	0.76	4e-47
P25855	165	Glycine cleavage system H	no	no	0.930	0.733	0.717	1e-43

>sp|P49360|GCSH_FLAPU Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria pubescens GN=GDCSH PE=2 SV=1

 Score =  205 bits (522), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 98/121 (80%), Positives = 109/121 (90%)

Query: 1   MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITD 60
           MALRMWASSTANALR+S A++     LSRCFSSVLDGLKYA+SHEWVKHEGSVATVGITD
Sbjct: 1   MALRMWASSTANALRLSSATRPHYSPLSRCFSSVLDGLKYANSHEWVKHEGSVATVGITD 60

Query: 61  HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGL 120
           HAQDHLGEVVFV+LPE G SV +  GFG VESVKATSDVNSPISGE++EVN+KL+ETPGL
Sbjct: 61  HAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGL 120

Query: 121 V 121
           +
Sbjct: 121 I 121

The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
Flaveria pubescens (taxid: 35880)

>sp|Q39732|GCSH_FLAAN Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1

 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/121 (80%), Positives = 109/121 (90%)

Query: 1   MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITD 60
           MALRMWASSTANALR+S A++     LSRCFSSVLDGLKYA+SHEWVKHEGSVAT+GITD
Sbjct: 1   MALRMWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITD 60

Query: 61  HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGL 120
           HAQDHLGEVVFV+LPE G SV +  GFG VESVKATSDVNSPISGE++EVN+KL+ETPGL
Sbjct: 61  HAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGL 120

Query: 121 V 121
           +
Sbjct: 121 I 121

The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.

Flaveria anomala (taxid: 35877)

>sp|P49359|GCSH_FLAPR Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1

 Score =  202 bits (513), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 96/121 (79%), Positives = 109/121 (90%)

Query: 1   MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITD 60
           MALR+WASSTANALR+S A++     LSRCFSSVLDGLKYA+SHEWVKHEGSVAT+GITD
Sbjct: 1   MALRIWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITD 60

Query: 61  HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGL 120
           HAQDHLGEVVFV+LPE G SV +  GFG VESVKATSDVNSPISGE++EVN+KL+ETPGL
Sbjct: 61  HAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGL 120

Query: 121 V 121
           +
Sbjct: 121 I 121

The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.

Flaveria pringlei (taxid: 4226)

>sp|A3C6G9|GCSH_ORYSJ Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1

 Score =  198 bits (504), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 95/124 (76%), Positives = 110/124 (88%), Gaps = 3/124 (2%)

Query: 1   MALRMWASSTANALRISCASKT---PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
           MALR+WASS ANAL+ISC+  T   PA+++SR FS+VLDGLKY+SSHEWVK++GSVAT+G
Sbjct: 1   MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIG 60

Query: 58  ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
           ITDHAQ HLGEVVFVELPE GA V QGG FG VESVKATSD+NSPISGEV+EVN KL+ET
Sbjct: 61  ITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSET 120

Query: 118 PGLV 121
           PGL+
Sbjct: 121 PGLI 124

The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Z9B8|GCSH_ORYSI Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1

 Score =  198 bits (504), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 95/124 (76%), Positives = 110/124 (88%), Gaps = 3/124 (2%)

Query: 1   MALRMWASSTANALRISCASKT---PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
           MALR+WASS ANAL+ISC+  T   PA+++SR FS+VLDGLKY+SSHEWVK++GSVAT+G
Sbjct: 1   MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIG 60

Query: 58  ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
           ITDHAQ HLGEVVFVELPE GA V QGG FG VESVKATSD+NSPISGEV+EVN KL+ET
Sbjct: 61  ITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSET 120

Query: 118 PGLV 121
           PGL+
Sbjct: 121 PGLI 124

The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P46485|GCSH_FLATR Glycine cleavage system H protein, mitochondrial OS=Flaveria trinervia GN=GDCSH PE=2 SV=1

 Score =  193 bits (491), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/123 (78%), Positives = 107/123 (86%), Gaps = 2/123 (1%)

Query: 1   MALRMWASSTANALRISCASKTPAFALSRCFSS--VLDGLKYASSHEWVKHEGSVATVGI 58
           MALR+WASSTA ALR+S AS+     L RCFSS  VLDGLKYA+SHEWVKHEGSVAT+GI
Sbjct: 1   MALRIWASSTAKALRLSSASRPHFSPLFRCFSSAAVLDGLKYANSHEWVKHEGSVATIGI 60

Query: 59  TDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETP 118
           TDHAQDHLGEVVFVELPE G SV +  GFG VESVKATSDVNSPISGE++EVN+KLT+TP
Sbjct: 61  TDHAQDHLGEVVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLTKTP 120

Query: 119 GLV 121
           GL+
Sbjct: 121 GLI 123

The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.

Flaveria trinervia (taxid: 4227)

>sp|P16048|GCSH_PEA Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 SV=1

 Score =  192 bits (487), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 99/124 (79%), Positives = 109/124 (87%), Gaps = 3/124 (2%)

Query: 1   MALRMWASSTANALRISCASKT---PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
           MALRMWASSTANAL++S +S+    P F++SRCFS+VLDGLKYA SHEWVKHEGSVAT+G
Sbjct: 1   MALRMWASSTANALKLSSSSRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIG 60

Query: 58  ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
           ITDHAQDHLGEVVFVELPE G SV +G GFG VESVKATSDVNSPISGEVIEVNT LT  
Sbjct: 61  ITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGK 120

Query: 118 PGLV 121
           PGL+
Sbjct: 121 PGLI 124

The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.

Pisum sativum (taxid: 3888)

>sp|P93255|GCSH_MESCR Glycine cleavage system H protein, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCSH PE=2 SV=1

 Score =  187 bits (476), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/124 (75%), Positives = 106/124 (85%), Gaps = 4/124 (3%)

Query: 1   MALRMWASSTANALRISCASKT---PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
           MALRMWASS ANAL +SCA K+   PA +LSRCFS+VLDGLKYASSHEWVKH GSVAT+G
Sbjct: 1   MALRMWASSAANALGVSCAPKSHLLPALSLSRCFSTVLDGLKYASSHEWVKHGGSVATIG 60

Query: 58  ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
           ITDHAQ HLG+VVF ELPE GA V  G  F  VESVKATSDVNSPISGE++EVNTKL+++
Sbjct: 61  ITDHAQGHLGDVVFAELPEGGA-VSAGKPFASVESVKATSDVNSPISGEIVEVNTKLSDS 119

Query: 118 PGLV 121
           PGL+
Sbjct: 120 PGLL 123

The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|Q9LQL0|GCSH2_ARATH Probable glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=At1g32470 PE=1 SV=1

 Score =  186 bits (472), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/125 (76%), Positives = 110/125 (88%), Gaps = 4/125 (3%)

Query: 1   MALRMWASSTANALRISCASKT----PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATV 56
           MALRMWASSTANAL++S ++      PAF++SRCFSSVL+GLKYA+SHEWVKHEGSVAT+
Sbjct: 1   MALRMWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATI 60

Query: 57  GITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116
           GITDHAQDHLGEVVFVELPE  +SV +   FG VESVKATS++ SPISGEVIEVNTKLTE
Sbjct: 61  GITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTE 120

Query: 117 TPGLV 121
           +PGL+
Sbjct: 121 SPGLI 125

The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P25855|GCSH1_ARATH Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSH PE=1 SV=1

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 103/124 (83%), Gaps = 3/124 (2%)

Query: 1   MALRMWASSTANALRISCASKTP---AFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
           MALRMWASSTANAL++S +        F+ SRCFS+VL+GLKYA+SHEWVKHEGSVAT+G
Sbjct: 1   MALRMWASSTANALKLSSSVSKSHLSPFSFSRCFSTVLEGLKYANSHEWVKHEGSVATIG 60

Query: 58  ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
           IT HAQDHLGEVVFVELPE   SV +   FG VESVKATS++ SPISGE+IEVN KLTE+
Sbjct: 61  ITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTES 120

Query: 118 PGLV 121
           PGL+
Sbjct: 121 PGLI 124

The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
147770018	165	hypothetical protein VITISV_038357 [Viti	0.930	0.733	0.838	4e-55
225427234	165	PREDICTED: glycine cleavage system H pro	0.930	0.733	0.838	8e-55
359474565	147	PREDICTED: glycine cleavage system H pro	0.923	0.816	0.845	2e-54
449461527	165	PREDICTED: glycine cleavage system H pro	0.930	0.733	0.798	5e-52
547519	152	H-protein [Flaveria cronquistii]	0.930	0.796	0.809	2e-51
388509560	166	unknown [Lotus japonicus]	0.930	0.728	0.784	3e-51
437993	162	H-protein [Flaveria cronquistii] gi|4379	0.930	0.746	0.809	4e-51
255557631	165	glycine cleavage system h protein, putat	0.946	0.745	0.792	4e-51
1346119	152	RecName: Full=Glycine cleavage system H	0.930	0.796	0.809	5e-51
134142794	163	mitochondrial glycine decarboxylase comp	0.930	0.742	0.782	5e-51

>gi|147770018|emb|CAN76620.1| hypothetical protein VITISV_038357 [Vitis vinifera]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/124 (83%), Positives = 116/124 (93%), Gaps = 3/124 (2%)

Query: 1   MALRMWASSTANALRISCASK---TPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
           MALRMWASSTANALR+SCASK   +PAF+LSRCFSSVLDGLKYA+SHEWVKHEGSVAT+G
Sbjct: 1   MALRMWASSTANALRVSCASKAHVSPAFSLSRCFSSVLDGLKYATSHEWVKHEGSVATIG 60

Query: 58  ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
           ITDHAQDHLGEVVFVELPE G SV +G GFG VESVKATSD+NSPISGEV+EVN+KL+E+
Sbjct: 61  ITDHAQDHLGEVVFVELPEPGGSVSKGNGFGAVESVKATSDINSPISGEVVEVNSKLSES 120

Query: 118 PGLV 121
           PGL+
Sbjct: 121 PGLI 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427234|ref|XP_002280707.1| PREDICTED: glycine cleavage system H protein, mitochondrial isoform 1 [Vitis vinifera] gi|297742112|emb|CBI33899.3| unnamed protein product [Vitis vinifera]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 104/124 (83%), Positives = 115/124 (92%), Gaps = 3/124 (2%)

Query: 1   MALRMWASSTANALRISCASK---TPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
           MALRMWASSTANALR+SCASK   +PAF+LSRCFSSVLDGLKYA+SHEWVKHEGSVAT+G
Sbjct: 1   MALRMWASSTANALRVSCASKAHVSPAFSLSRCFSSVLDGLKYATSHEWVKHEGSVATIG 60

Query: 58  ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
           ITDHAQDHLGEVVFVE+PE G SV +G GFG VESVKATSDVNSPISGEV+EVN+KL+E 
Sbjct: 61  ITDHAQDHLGEVVFVEIPEPGGSVSKGNGFGAVESVKATSDVNSPISGEVVEVNSKLSEA 120

Query: 118 PGLV 121
           PGL+
Sbjct: 121 PGLI 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474565|ref|XP_003631491.1| PREDICTED: glycine cleavage system H protein, mitochondrial isoform 2 [Vitis vinifera]

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/123 (84%), Positives = 114/123 (92%), Gaps = 3/123 (2%)

Query: 1   MALRMWASSTANALRISCASK---TPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
           MALRMWASSTANALR+SCASK   +PAF+LSRCFSSVLDGLKYA+SHEWVKHEGSVAT+G
Sbjct: 1   MALRMWASSTANALRVSCASKAHVSPAFSLSRCFSSVLDGLKYATSHEWVKHEGSVATIG 60

Query: 58  ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
           ITDHAQDHLGEVVFVE+PE G SV +G GFG VESVKATSDVNSPISGEV+EVN+KL+E 
Sbjct: 61  ITDHAQDHLGEVVFVEIPEPGGSVSKGNGFGAVESVKATSDVNSPISGEVVEVNSKLSEA 120

Query: 118 PGL 120
           PGL
Sbjct: 121 PGL 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461527|ref|XP_004148493.1| PREDICTED: glycine cleavage system H protein, mitochondrial-like [Cucumis sativus] gi|449513621|ref|XP_004164375.1| PREDICTED: glycine cleavage system H protein, mitochondrial-like [Cucumis sativus]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 99/124 (79%), Positives = 114/124 (91%), Gaps = 3/124 (2%)

Query: 1   MALRMWASSTANALRISCASKT---PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
           MALRMWASSTANAL++S +SKT   P+F+LSRCFS+VLDGLKYASSHEWVKHEGSVATVG
Sbjct: 1   MALRMWASSTANALKLSSSSKTHLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60

Query: 58  ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
           ITDHAQDHLGEVVFV+LPE+G+SV QG  FG VESVKATSD+NSPISGE++EVN +L E+
Sbjct: 61  ITDHAQDHLGEVVFVDLPESGSSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120

Query: 118 PGLV 121
           PGL+
Sbjct: 121 PGLI 124

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|547519|emb|CAA85755.1| H-protein [Flaveria cronquistii]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/121 (80%), Positives = 110/121 (90%)

Query: 1   MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITD 60
           MALRMWASSTANALR+S A++     LSRCFSSVLDGLKYA+SHEWVKHEGSVAT+GITD
Sbjct: 1   MALRMWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYATSHEWVKHEGSVATIGITD 60

Query: 61  HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGL 120
           HAQDHLGEVVFV+LP+TG SV +  GFG VESVKATSDVNSPISGE++EVNTKL+ETPGL
Sbjct: 61  HAQDHLGEVVFVDLPDTGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNTKLSETPGL 120

Query: 121 V 121
           +
Sbjct: 121 I 121

Source: Flaveria cronquistii

Species: Flaveria cronquistii

Genus: Flaveria

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509560|gb|AFK42846.1| unknown [Lotus japonicus]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 98/125 (78%), Positives = 111/125 (88%), Gaps = 4/125 (3%)

Query: 1   MALRMWASSTANALRISCASK----TPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATV 56
           MALRMWASSTANAL++S ++     +P F+LSRCFSSVLDGLKYASSHEWVKHEGSVAT+
Sbjct: 1   MALRMWASSTANALKLSSSASRLHLSPPFSLSRCFSSVLDGLKYASSHEWVKHEGSVATI 60

Query: 57  GITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116
           GITDHAQDHLGE VFVELPE+G  V +G GFG VESVKATSD+NSPISGE+IEVNTKL+E
Sbjct: 61  GITDHAQDHLGEAVFVELPESGKPVTKGDGFGAVESVKATSDINSPISGEIIEVNTKLSE 120

Query: 117 TPGLV 121
            PGL+
Sbjct: 121 QPGLI 125

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|437993|emb|CAA81073.1| H-protein [Flaveria cronquistii] gi|437999|emb|CAA81074.1| H-protein [Flaveria pringlei] gi|3688299|emb|CAB16912.1| H-protein [Flaveria pringlei]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 98/121 (80%), Positives = 110/121 (90%)

Query: 1   MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITD 60
           MALRMWASSTANALR+S A++     LSRCFSSVLDGLKYA+SHEWVKHEGSVAT+GITD
Sbjct: 1   MALRMWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITD 60

Query: 61  HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGL 120
           HAQDHLGEVVFV+LPETG SV +  GFG VESVKATSDVNSPISGE++EVN+KL+ETPGL
Sbjct: 61  HAQDHLGEVVFVDLPETGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGL 120

Query: 121 V 121
           +
Sbjct: 121 I 121

Source: Flaveria cronquistii

Species: Flaveria cronquistii

Genus: Flaveria

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557631|ref|XP_002519845.1| glycine cleavage system h protein, putative [Ricinus communis] gi|223540891|gb|EEF42449.1| glycine cleavage system h protein, putative [Ricinus communis]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 103/130 (79%), Positives = 113/130 (86%), Gaps = 7/130 (5%)

Query: 1   MALRMWASSTANALRISCASK---TPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
           MALRMWASSTAN L+IS A K   +P+++LSRCFSSVLDGLKYA+SHEWVKHEGSVAT+G
Sbjct: 1   MALRMWASSTANTLKISVACKAQLSPSYSLSRCFSSVLDGLKYATSHEWVKHEGSVATIG 60

Query: 58  ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
           ITDHAQDHLGEVVFV+LPE G SV QG  FG VESVKATSDVNSPISGEV+EVNTKLTE 
Sbjct: 61  ITDHAQDHLGEVVFVDLPEAGTSVTQGKSFGAVESVKATSDVNSPISGEVVEVNTKLTEG 120

Query: 118 PGLVIFSVNS 127
           PG    S+NS
Sbjct: 121 PG----SINS 126

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1346119|sp|P49360.1|GCSH_FLAPU RecName: Full=Glycine cleavage system H protein, mitochondrial; Flags: Precursor gi|547564|emb|CAA85768.1| H-protein [Flaveria pubescens]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 98/121 (80%), Positives = 109/121 (90%)

Query: 1   MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITD 60
           MALRMWASSTANALR+S A++     LSRCFSSVLDGLKYA+SHEWVKHEGSVATVGITD
Sbjct: 1   MALRMWASSTANALRLSSATRPHYSPLSRCFSSVLDGLKYANSHEWVKHEGSVATVGITD 60

Query: 61  HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGL 120
           HAQDHLGEVVFV+LPE G SV +  GFG VESVKATSDVNSPISGE++EVN+KL+ETPGL
Sbjct: 61  HAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGL 120

Query: 121 V 121
           +
Sbjct: 121 I 121

Source: Flaveria pubescens

Species: Flaveria pubescens

Genus: Flaveria

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134142794|gb|ABO61731.1| mitochondrial glycine decarboxylase complex H-protein [Populus tremuloides]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 97/124 (78%), Positives = 112/124 (90%), Gaps = 3/124 (2%)

Query: 1   MALRMWASSTANALRISCASK---TPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
           MALR+WASSTANALRIS AS    +P+++LSRCFS+VLDGLKYA+SHEWVKHEGSVAT+G
Sbjct: 1   MALRLWASSTANALRISVASTAHVSPSYSLSRCFSTVLDGLKYATSHEWVKHEGSVATIG 60

Query: 58  ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
           ITDHAQDHLGEVVFV+LPE   SV QG  FG VESVKATSD+NSPISGE++EVNT+L+ET
Sbjct: 61  ITDHAQDHLGEVVFVDLPEADDSVSQGKSFGAVESVKATSDINSPISGEIVEVNTQLSET 120

Query: 118 PGLV 121
           PGL+
Sbjct: 121 PGLI 124

Source: Populus tremuloides

Species: Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
UNIPROTKB|P16048	165	GDCSH "Glycine cleavage system	0.930	0.733	0.798	2.3e-48
TAIR|locus:2033802	166	AT1G32470 "AT1G32470" [Arabido	0.930	0.728	0.784	5.4e-47
TAIR|locus:2062435	165	GDCH "AT2G35370" [Arabidopsis	0.930	0.733	0.733	3.5e-43
TAIR|locus:2063464	156	AT2G35120 "AT2G35120" [Arabido	0.869	0.724	0.650	5.8e-34
TIGR_CMR|CHY_0490	130	CHY_0490 "glycine cleavage sys	0.692	0.692	0.522	9e-22
TIGR_CMR|SO_0780	129	SO_0780 "glycine cleavage syst	0.692	0.697	0.582	2.4e-21
WB|WBGene00008354	148	gcsh-1 [Caenorhabditis elegans	0.661	0.581	0.511	4.9e-21
ZFIN|ZDB-GENE-040718-319	174	gcshb "glycine cleavage system	0.692	0.517	0.549	1e-20
ZFIN|ZDB-GENE-050320-18	174	gcsha "glycine cleavage system	0.876	0.655	0.447	1.7e-20
TIGR_CMR|SPO_A0058	146	SPO_A0058 "glycine cleavage sy	0.615	0.547	0.537	2.7e-20

UNIPROTKB|P16048 GDCSH "Glycine cleavage system H protein, mitochondrial" [Pisum sativum (taxid:3888)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 99/124 (79%), Positives = 110/124 (88%)

Query:     1 MALRMWASSTANALRISCASK---TPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
             MALRMWASSTANAL++S +S+   +P F++SRCFS+VLDGLKYA SHEWVKHEGSVAT+G
Sbjct:     1 MALRMWASSTANALKLSSSSRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIG 60

Query:    58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
             ITDHAQDHLGEVVFVELPE G SV +G GFG VESVKATSDVNSPISGEVIEVNT LT  
Sbjct:    61 ITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGK 120

Query:   118 PGLV 121
             PGL+
Sbjct:   121 PGLI 124

GO:0005960 "glycine cleavage complex" evidence=IDA

TAIR|locus:2033802 AT1G32470 "AT1G32470" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 98/125 (78%), Positives = 112/125 (89%)

Query:     1 MALRMWASSTANALRISC-ASKT---PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATV 56
             MALRMWASSTANAL++S  ASK+   PAF++SRCFSSVL+GLKYA+SHEWVKHEGSVAT+
Sbjct:     1 MALRMWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATI 60

Query:    57 GITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116
             GITDHAQDHLGEVVFVELPE  +SV +   FG VESVKATS++ SPISGEVIEVNTKLTE
Sbjct:    61 GITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTE 120

Query:   117 TPGLV 121
             +PGL+
Sbjct:   121 SPGLI 125

GO:0004375 "glycine dehydrogenase (decarboxylating) activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005960 "glycine cleavage complex" evidence=IEA;ISS

GO:0006546 "glycine catabolic process" evidence=IEA;ISS

GO:0019464 "glycine decarboxylation via glycine cleavage system" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

TAIR|locus:2062435 GDCH "AT2G35370" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 91/124 (73%), Positives = 106/124 (85%)

Query:     1 MALRMWASSTANALRISCA-SKT--PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
             MALRMWASSTANAL++S + SK+    F+ SRCFS+VL+GLKYA+SHEWVKHEGSVAT+G
Sbjct:     1 MALRMWASSTANALKLSSSVSKSHLSPFSFSRCFSTVLEGLKYANSHEWVKHEGSVATIG 60

Query:    58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
             IT HAQDHLGEVVFVELPE   SV +   FG VESVKATS++ SPISGE+IEVN KLTE+
Sbjct:    61 ITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTES 120

Query:   118 PGLV 121
             PGL+
Sbjct:   121 PGLI 124

GO:0004375 "glycine dehydrogenase (decarboxylating) activity" evidence=TAS

GO:0005739 "mitochondrion" evidence=ISM;TAS

GO:0005960 "glycine cleavage complex" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0009853 "photorespiration" evidence=TAS

GO:0019464 "glycine decarboxylation via glycine cleavage system" evidence=IEA;TAS

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2063464 AT2G35120 "AT2G35120" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 80/123 (65%), Positives = 93/123 (75%)

Query:     1 MALRM-WASSTANALRISCASKTPAFALSRCFSSV-LDGLKYASSHEWVKHEGSVATVGI 58
             MA R+ WAS  A+ LRIS A         R FSSV L  LKYA SHEWVK +G+ AT GI
Sbjct:     1 MACRLFWASRVASHLRISVAQ--------RGFSSVVLKDLKYADSHEWVKIDGNKATFGI 52

Query:    59 TDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETP 118
             TDHAQDHLG+VV+VELP+ G SV QG  FG VESVKATSD+NSP+SG+V+EVN +LTE+P
Sbjct:    53 TDHAQDHLGDVVYVELPDVGHSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELTESP 112

Query:   119 GLV 121
             GLV
Sbjct:   113 GLV 115

GO:0004375 "glycine dehydrogenase (decarboxylating) activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005960 "glycine cleavage complex" evidence=IEA;ISS

GO:0006546 "glycine catabolic process" evidence=IEA;ISS

GO:0019464 "glycine decarboxylation via glycine cleavage system" evidence=IEA

GO:0005524 "ATP binding" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TIGR_CMR|CHY_0490 CHY_0490 "glycine cleavage system H protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 47/90 (52%), Positives = 65/90 (72%)

Query:    32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91
             S V   LKY+  HEW+K +G++  +GITD AQ  LG++VF+ELP  G  +  G  FGVVE
Sbjct:     2 SVVPKDLKYSREHEWIKVDGNIGIIGITDFAQKSLGDIVFIELPGVGDEISAGDSFGVVE 61

Query:    92 SVKATSDVNSPISGEVIEVNTKLTETPGLV 121
             SVKA SD+ +P+SG+V+EVN ++ E+P LV
Sbjct:    62 SVKAASDLYAPVSGKVVEVNEEVIESPQLV 91

GO:0003824 "catalytic activity" evidence=ISS

GO:0019464 "glycine decarboxylation via glycine cleavage system" evidence=ISS

TIGR_CMR|SO_0780 SO_0780 "glycine cleavage system H protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 53/91 (58%), Positives = 65/91 (71%)

Query:    32 SSVLDGLKYASSHEWV-KHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVV 90
             S++   LKYASSHEW+ K E    TVGIT+HAQ+ LG++VFVELPE G +V  G    V 
Sbjct:     2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGDDCAVA 61

Query:    91 ESVKATSDVNSPISGEVIEVNTKLTETPGLV 121
             ESVKA SD+ +PISGEVI VN  L ++P LV
Sbjct:    62 ESVKAASDIYAPISGEVIAVNEALEDSPELV 92

GO:0003824 "catalytic activity" evidence=ISS

GO:0019464 "glycine decarboxylation via glycine cleavage system" evidence=ISS

WB|WBGene00008354 gcsh-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 44/86 (51%), Positives = 61/86 (70%)

Query:    36 DGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKA 95
             +G  Y   HEW+    SV TVGITD A + LG+VVF+ELPE G  +++G   G VESVKA
Sbjct:    22 NGRLYTKKHEWIVVNQSVGTVGITDFATEQLGDVVFIELPEAGVEIEKGDSTGAVESVKA 81

Query:    96 TSDVNSPISGEVIEVNTKLTETPGLV 121
              SD+ +P+SG+++E NTKL + PG++
Sbjct:    82 ASDIYAPVSGKILEKNTKLEDEPGII 107

GO:0005960 "glycine cleavage complex" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0019464 "glycine decarboxylation via glycine cleavage system" evidence=IEA

ZFIN|ZDB-GENE-040718-319 gcshb "glycine cleavage system protein H (aminomethyl carrier), b" [Danio rerio (taxid:7955)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 50/91 (54%), Positives = 65/91 (71%)

Query:    32 SSVLDG-LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVV 90
             SS L G LK+   HEWV+ EGSV TVGI++ AQ+ LG+VV+  LPE G  + Q   FG +
Sbjct:    45 SSRLSGALKFTDKHEWVRVEGSVGTVGISNFAQEALGDVVYCGLPEVGTKLDQMEEFGAL 104

Query:    91 ESVKATSDVNSPISGEVIEVNTKLTETPGLV 121
             ESVKA S++ SP++GEV  +NT+LTE P LV
Sbjct:   105 ESVKAASELYSPLTGEVTAINTELTENPALV 135

GO:0019464 "glycine decarboxylation via glycine cleavage system" evidence=IEA

GO:0005960 "glycine cleavage complex" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

ZFIN|ZDB-GENE-050320-18 gcsha "glycine cleavage system protein H (aminomethyl carrier), a" [Danio rerio (taxid:7955)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 55/123 (44%), Positives = 77/123 (62%)

Query:     8 SSTANALRIS-CASKTPAFALSR-CFSSVLD-------GLKYASSHEWVKHEGSVATVGI 58
             S T++  R+S   +  PA  L+R C+   L         LK+   HEWV+ +G VATVGI
Sbjct:    13 SLTSSLPRLSNINAHAPARLLARTCYRRSLSTNTPFCAALKFTDKHEWVRVDGGVATVGI 72

Query:    59 TDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETP 118
             ++ AQ+ LG+VV+  LPE GA + Q  GFG +ESVKA S++ SP++GEV + N  L + P
Sbjct:    73 SNFAQEALGDVVYCGLPEIGAKLSQTDGFGALESVKAASELYSPLTGEVTDANDALADNP 132

Query:   119 GLV 121
             GLV
Sbjct:   133 GLV 135

GO:0005960 "glycine cleavage complex" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0019464 "glycine decarboxylation via glycine cleavage system" evidence=IEA

TIGR_CMR|SPO_A0058 SPO_A0058 "glycine cleavage system H protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 43/80 (53%), Positives = 57/80 (71%)

Query:    40 YASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDV 99
             Y+  HEW+  EG +AT+GIT HA D LGEVVF+E  E G +  QG   GV+ESVKA S++
Sbjct:    30 YSEDHEWLSVEGEIATLGITKHAADQLGEVVFIEQKEAGDAFAQGDEIGVIESVKAASEI 89

Query:   100 NSPISGEVIEVNTKLTETPG 119
              +P+ GEV+EVN +L + PG
Sbjct:    90 YAPVDGEVVEVNEELADNPG 109

GO:0003824 "catalytic activity" evidence=ISS

GO:0019464 "glycine decarboxylation via glycine cleavage system" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39732	GCSH_FLAAN	No assigned EC number	0.8016	0.9307	0.7469	N/A	no
A8Z1D8	GCSH_STAAT	No assigned EC number	0.5393	0.6846	0.7063	yes	no
Q6GB23	GCSH_STAAS	No assigned EC number	0.5505	0.6846	0.7063	yes	no
A3M4W5	GCSH_ACIBT	No assigned EC number	0.5833	0.6461	0.6774	yes	no
P46485	GCSH_FLATR	No assigned EC number	0.7804	0.9307	0.7333	N/A	no
A2Z9B8	GCSH_ORYSI	No assigned EC number	0.7661	0.9307	0.7378	N/A	no
B7H3Q0	GCSH_ACIB3	No assigned EC number	0.5833	0.6461	0.6774	yes	no
Q9LQL0	GCSH2_ARATH	No assigned EC number	0.76	0.9307	0.7289	yes	no
A6TZT7	GCSH_STAA2	No assigned EC number	0.5505	0.6846	0.7063	yes	no
P49360	GCSH_FLAPU	No assigned EC number	0.8099	0.9307	0.7960	N/A	no
Q8CPW8	GCSH_STAES	No assigned EC number	0.5476	0.6461	0.6666	yes	no
A6QFB6	GCSH_STAAE	No assigned EC number	0.5393	0.6846	0.7063	yes	no
Q67N37	GCSH_SYMTH	No assigned EC number	0.5952	0.6461	0.6562	yes	no
Q2FZZ8	GCSH_STAA8	No assigned EC number	0.5393	0.6846	0.7063	yes	no
Q1AR90	GCSH_RUBXD	No assigned EC number	0.6022	0.6769	0.6984	yes	no
A5IR11	GCSH_STAA9	No assigned EC number	0.5505	0.6846	0.7063	yes	no
A7X019	GCSH_STAA1	No assigned EC number	0.5505	0.6846	0.7063	yes	no
P93255	GCSH_MESCR	No assigned EC number	0.7580	0.9230	0.7361	N/A	no
B2HZ03	GCSH_ACIBC	No assigned EC number	0.5833	0.6461	0.6774	yes	no
A1JPN4	GCSH_YERE8	No assigned EC number	0.5652	0.7	0.7109	yes	no
Q5HHK8	GCSH_STAAC	No assigned EC number	0.5393	0.6846	0.7063	yes	no
B0K241	GCSH_THEPX	No assigned EC number	0.5505	0.6846	0.7063	yes	no
B0KD96	GCSH_THEP3	No assigned EC number	0.5393	0.6846	0.7063	yes	no
A6VXM7	GCSH_MARMS	No assigned EC number	0.5652	0.7	0.7165	yes	no
A8GIS0	GCSH_SERP5	No assigned EC number	0.5760	0.7	0.7109	yes	no
A3C6G9	GCSH_ORYSJ	No assigned EC number	0.7661	0.9307	0.7378	yes	no
B0VCZ2	GCSH_ACIBY	No assigned EC number	0.5833	0.6461	0.6774	yes	no
A7HQX9	GCSH_PARL1	No assigned EC number	0.5555	0.6230	0.648	yes	no
Q6D975	GCSH_ERWCT	No assigned EC number	0.5652	0.7	0.7	yes	no
A9ACU4	GCSH_BURM1	No assigned EC number	0.5306	0.7153	0.7380	yes	no
A5FUJ7	GCSH_ACICJ	No assigned EC number	0.5903	0.6384	0.6693	yes	no
Q8NXH7	GCSH_STAAW	No assigned EC number	0.5505	0.6846	0.7063	yes	no
P16048	GCSH_PEA	No assigned EC number	0.7983	0.9307	0.7333	N/A	no
Q5HQR3	GCSH_STAEQ	No assigned EC number	0.5357	0.6461	0.6666	yes	no
Q6GII3	GCSH_STAAR	No assigned EC number	0.5505	0.6846	0.7063	yes	no
A7IHF1	GCSH_XANP2	No assigned EC number	0.5952	0.6461	0.672	yes	no
P64214	GCSH_STAAN	No assigned EC number	0.5505	0.6846	0.7063	yes	no
Q2YWP4	GCSH_STAAB	No assigned EC number	0.5505	0.6846	0.7063	yes	no
B0VR13	GCSH_ACIBS	No assigned EC number	0.5714	0.6461	0.6774	yes	no
P64213	GCSH_STAAM	No assigned EC number	0.5505	0.6846	0.7063	yes	no
Q0VLA7	GCSH_ALCBS	No assigned EC number	0.6190	0.6461	0.6562	yes	no
B7I4Z0	GCSH_ACIB5	No assigned EC number	0.5833	0.6461	0.6774	yes	no
P49359	GCSH_FLAPR	No assigned EC number	0.7933	0.9307	0.7469	N/A	no
Q8UFD5	GCSH_AGRT5	No assigned EC number	0.5476	0.6461	0.7	yes	no
Q8RCW0	GCSH2_THETN	No assigned EC number	0.5393	0.6846	0.7063	yes	no
Q8XU99	GCSH_RALSO	No assigned EC number	0.5853	0.6230	0.6377	yes	no
Q89I87	GCSH_BRAJA	No assigned EC number	0.5731	0.6307	0.6721	yes	no
A8MEG5	GCSH_ALKOO	No assigned EC number	0.5882	0.6538	0.6692	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
PRK01202	127	PRK01202, PRK01202, glycine cleavage system protei	3e-50
COG0509	131	COG0509, GcvH, Glycine cleavage system H protein (	1e-42
cd06848	96	cd06848, GCS_H, Glycine cleavage H-protein	1e-40
pfam01597	122	pfam01597, GCV_H, Glycine cleavage H-protein	2e-39
TIGR00527	128	TIGR00527, gcvH, glycine cleavage system H protein	4e-34
PRK13380	144	PRK13380, PRK13380, glycine cleavage system protei	1e-28
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	4e-16
PRK00624	114	PRK00624, PRK00624, glycine cleavage system protei	6e-16
TIGR03077	110	TIGR03077, not_gcvH, glycine cleavage protein H-li	1e-14
PRK09282	592	PRK09282, PRK09282, pyruvate carboxylase subunit B	6e-04

>gnl|CDD|234918 PRK01202, PRK01202, glycine cleavage system protein H; Provisional

 Score =  155 bits (395), Expect = 3e-50
 Identities = 56/90 (62%), Positives = 68/90 (75%)

Query: 32  SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91
            ++   LKY  SHEWV+ EG  ATVGITDHAQ+ LG++VFVELPE G  VK G  FGVVE
Sbjct: 2   MNIPADLKYTKSHEWVRVEGDTATVGITDHAQEQLGDIVFVELPEVGDEVKAGETFGVVE 61

Query: 92  SVKATSDVNSPISGEVIEVNTKLTETPGLV 121
           SVKA SD+ +P+SGEV+EVN  L ++P LV
Sbjct: 62  SVKAASDIYAPVSGEVVEVNEALEDSPELV 91

Length = 127

>gnl|CDD|223583 COG0509, GcvH, Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

 Score =  136 bits (345), Expect = 1e-42
 Identities = 55/91 (60%), Positives = 68/91 (74%), Gaps = 1/91 (1%)

Query: 32  SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVV 90
            ++ D LKY + HEWV+ EG   ATVGITD+AQD LG++VFVELPE GA VK G    VV
Sbjct: 3   CNIPDDLKYTAEHEWVRVEGDGTATVGITDYAQDQLGDIVFVELPEVGAEVKAGESLAVV 62

Query: 91  ESVKATSDVNSPISGEVIEVNTKLTETPGLV 121
           ESVKA SDV +P+SGEV+EVN  L ++P L+
Sbjct: 63  ESVKAASDVYAPVSGEVVEVNEALVDSPELI 93

Length = 131

>gnl|CDD|133457 cd06848, GCS_H, Glycine cleavage H-protein

 Score =  129 bits (328), Expect = 1e-40
 Identities = 53/83 (63%), Positives = 63/83 (75%), Gaps = 1/83 (1%)

Query: 40  YASSHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSD 98
           Y   HEWVK EG  +ATVGITD+AQD LG++VFVELPE G  VK+G  FG VESVKA SD
Sbjct: 1   YTKDHEWVKVEGDGIATVGITDYAQDLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASD 60

Query: 99  VNSPISGEVIEVNTKLTETPGLV 121
           + SP+SGEV+EVN  L + P L+
Sbjct: 61  LYSPVSGEVVEVNEALLDNPELI 83

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue. Length = 96

>gnl|CDD|201881 pfam01597, GCV_H, Glycine cleavage H-protein

 Score =  127 bits (322), Expect = 2e-39
 Identities = 53/85 (62%), Positives = 62/85 (72%), Gaps = 1/85 (1%)

Query: 38  LKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKAT 96
           L Y   HEWVK EG   ATVGITD AQ  LG++VFVELPE G  VK+G   G VESVKA 
Sbjct: 1   LYYTKEHEWVKVEGDGTATVGITDFAQAELGDLVFVELPEVGTEVKKGESLGAVESVKAA 60

Query: 97  SDVNSPISGEVIEVNTKLTETPGLV 121
           S+V +P+SGEV+EVN KL + PGL+
Sbjct: 61  SEVYAPVSGEVVEVNEKLEDNPGLI 85

This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyzes the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. Length = 122

>gnl|CDD|200024 TIGR00527, gcvH, glycine cleavage system H protein

 Score =  114 bits (288), Expect = 4e-34
 Identities = 51/90 (56%), Positives = 62/90 (68%), Gaps = 1/90 (1%)

Query: 33  SVLDGLKYASSHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91
                L+Y+S HEWV+ EG   ATVGIT  AQD LG++VFVELPE GA V  G   G VE
Sbjct: 1   QGPQDLRYSSEHEWVRVEGDKTATVGITKFAQDELGDIVFVELPEVGAEVAAGESLGSVE 60

Query: 92  SVKATSDVNSPISGEVIEVNTKLTETPGLV 121
           SVKA SD+ +P+ G V+EVNT L ++P LV
Sbjct: 61  SVKAASDIYAPVDGTVVEVNTALEDSPELV 90

This model represents the glycine cleavage system H protein, which shuttles the methylamine group of glycine from the P protein to the T protein. The mature protein is about 130 residues long and contains a lipoyl group covalently bound to a conserved Lys residue. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff [Energy metabolism, Amino acids and amines]. Length = 128

>gnl|CDD|237370 PRK13380, PRK13380, glycine cleavage system protein H; Provisional

 Score =  101 bits (254), Expect = 1e-28
 Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 1/83 (1%)

Query: 40  YASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSD 98
              +HEW++ EG    TVGITD+AQ   G+VVFV L E G  V++G     +ES K    
Sbjct: 16  TIKNHEWLRLEGDGTVTVGITDYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGP 75

Query: 99  VNSPISGEVIEVNTKLTETPGLV 121
           V +P++GEV+EVN  L ++P LV
Sbjct: 76  VPAPLTGEVVEVNEALEDSPELV 98

Length = 144

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 67.5 bits (165), Expect = 4e-16
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 55  TVGITDHAQDHLGEVVFV-ELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113
           T+ I D AQ HLG+   V  L + G  VK+G     +E++KATSDV +P SG V +V  K
Sbjct: 1   TILIPDLAQ-HLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVK 59

Query: 114 LTETP 118
                
Sbjct: 60  EGTKV 64

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|167014 PRK00624, PRK00624, glycine cleavage system protein H; Provisional

 Score = 68.3 bits (167), Expect = 6e-16
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 40  YASSHEWVK--HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATS 97
           Y+  H W++  H   +  +G+T   Q++LG ++ ++LP  G+  K+G    ++ES K+  
Sbjct: 4   YSDYHVWIEPIHS-RIVRLGLTSKMQENLGNILHIDLPSVGSFCKEGEVLVILESSKSAI 62

Query: 98  DVNSPISGEVIEVNTKLTETPGLV 121
           +V SP+SGEVIEVNT L +    +
Sbjct: 63  EVLSPVSGEVIEVNTALEDDIQPI 86

Length = 114

>gnl|CDD|132121 TIGR03077, not_gcvH, glycine cleavage protein H-like protein, Chlamydial

 Score = 64.9 bits (158), Expect = 1e-14
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 40  YASSHEWVK--HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATS 97
           Y+  H W+   H   V  +G+T   Q++LG ++ ++LP  G+S K+G    ++ES K+  
Sbjct: 2   YSDYHVWILPIHS-QVVRLGLTSRMQENLGNILHIDLPSVGSSCKEGEVLVILESSKSAI 60

Query: 98  DVNSPISGEVIEVNTKLTETPGLV 121
           +V SP+SGEVIEVN  L +    +
Sbjct: 61  EVLSPVSGEVIEVNIALEDDTQPI 84

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown. Length = 110

>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 70  VFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL--TETPGLVIFSV 125
           V V+    G  VK G    V+E++K  +++ +P+ G V E+  K      PG V+  +
Sbjct: 536 VKVK---EGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEI 590

Length = 592

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	100.0
PRK01202	127	glycine cleavage system protein H; Provisional	100.0
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	100.0
PRK13380	144	glycine cleavage system protein H; Provisional	100.0
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	99.98
PRK00624	114	glycine cleavage system protein H; Provisional	99.97
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	99.97
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	99.97
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	99.96
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.32
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	98.88
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	98.85
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	98.79
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	98.69
PRK06748	83	hypothetical protein; Validated	98.69
PRK07051	80	hypothetical protein; Validated	98.48
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	98.45
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	98.42
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	98.41
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	98.32
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	98.29
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	98.26
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	98.22
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	98.2
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	98.19
PRK14042	596	pyruvate carboxylase subunit B; Provisional	98.15
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	98.15
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	98.14
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.1
PRK14040	593	oxaloacetate decarboxylase; Provisional	98.07
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	98.02
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	97.98
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	97.91
PRK09282	592	pyruvate carboxylase subunit B; Validated	97.88
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	97.87
PRK12999	1146	pyruvate carboxylase; Reviewed	97.85
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	97.82
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	97.71
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	97.68
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	97.64
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	97.57
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	97.53
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	97.49
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	97.48
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	97.38
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	97.38
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	97.37
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	97.37
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	97.33
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	97.29
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	97.16
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	97.01
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	96.99
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	96.99
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	96.91
KOG3266	172	consensus Predicted glycine cleavage system H prot	96.77
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	96.74
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	96.62
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	96.28
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	96.16
PRK09783	409	copper/silver efflux system membrane fusion protei	95.95
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	95.94
PRK05035	695	electron transport complex protein RnfC; Provision	95.77
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	95.66
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	95.64
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	94.95
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	94.79
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	94.77
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	94.63
PRK09859	385	multidrug efflux system protein MdtE; Provisional	94.43
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	94.36
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	94.1
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	94.09
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	93.73
PRK11578	370	macrolide transporter subunit MacA; Provisional	93.67
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	93.61
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	93.48
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	93.29
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	93.19
COG4072	161	Uncharacterized protein conserved in archaea [Func	92.34
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	92.32
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	92.21
COG3608	331	Predicted deacylase [General function prediction o	91.24
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	89.85
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	88.55
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	88.33
PRK15136	390	multidrug efflux system protein EmrA; Provisional	87.68
PRK10476	346	multidrug resistance protein MdtN; Provisional	86.88
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	86.62
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	86.61
PRK09439	169	PTS system glucose-specific transporter subunit; P	84.49
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	83.67
PRK06748	83	hypothetical protein; Validated	83.65
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	82.94
PRK12784	84	hypothetical protein; Provisional	82.57
COG2190	156	NagE Phosphotransferase system IIA components [Car	80.3

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-36  Score=221.82  Aligned_cols=96  Identities=57%  Similarity=0.890  Sum_probs=93.5

Q ss_pred             cccCCcceeeCceeEEEEeC-CEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEe
Q 032928           32 SSVLDGLKYASSHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEV  110 (130)
Q Consensus        32 ~~~p~~~~ys~~H~Wv~~e~-~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~v  110 (130)
                      +++|++++|+.+|+|++.++ +.++||||+++|+++|+|+||+||++|++|++|+++++|||.|++++++||++|+|+++
T Consensus         3 ~~~p~~l~Y~~~heWvr~e~d~~~tvGiT~~aq~~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvev   82 (131)
T COG0509           3 CNIPDDLKYTAEHEWVRVEGDGTATVGITDYAQDQLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEV   82 (131)
T ss_pred             ccccccceeccceEEEEecCCCEEEEeCCHHHHHhcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEe
Confidence            47899999999999999987 79999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCcccccCCCCc
Q 032928          111 NTKLTETPGLVIFSVNS  127 (130)
Q Consensus       111 N~~l~~~P~llN~~~~~  127 (130)
                      |++|.++|++||++|.+
T Consensus        83 N~~l~~~PeliN~dPyg   99 (131)
T COG0509          83 NEALVDSPELINSDPYG   99 (131)
T ss_pred             chhhhcChhhhccCCCC
Confidence            99999999999999975

>PRK01202 glycine cleavage system protein H; Provisional

Probab=100.00  E-value=6.7e-34  Score=207.82  Aligned_cols=96  Identities=58%  Similarity=0.913  Sum_probs=93.2

Q ss_pred             cccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928           32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN  111 (130)
Q Consensus        32 ~~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN  111 (130)
                      +.+|++++|+++|+||+.+++.++||||+|+|+++|+|.||+||++|++|++||+|++|||+|++.+|+||++|+|+++|
T Consensus         2 ~~~p~~~~ys~~H~Wv~~~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN   81 (127)
T PRK01202          2 MNIPADLKYTKSHEWVRVEGDTATVGITDHAQEQLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVN   81 (127)
T ss_pred             CcCCcCceECCCcEEEEEcCCEEEEeeCHHHHhhcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEh
Confidence            46899999999999999988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCcccccCCCCc
Q 032928          112 TKLTETPGLVIFSVNS  127 (130)
Q Consensus       112 ~~l~~~P~llN~~~~~  127 (130)
                      .++.+||++||++|.+
T Consensus        82 ~~l~~~p~~ln~~p~~   97 (127)
T PRK01202         82 EALEDSPELVNEDPYG   97 (127)
T ss_pred             HHhhhCcHhhcCCCCC
Confidence            9999999999999964

>TIGR00527 gcvH glycine cleavage system H protein

Probab=100.00  E-value=8.2e-34  Score=207.44  Aligned_cols=95  Identities=54%  Similarity=0.846  Sum_probs=91.5

Q ss_pred             ccCCcceeeCceeEEEEeCC-EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928           33 SVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN  111 (130)
Q Consensus        33 ~~p~~~~ys~~H~Wv~~e~~-~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN  111 (130)
                      .+|++++|+++|+|++.+++ .++||||+|+|+++|+|.||+||++|++|++||+|++|||+|++.+|+||++|+|+++|
T Consensus         1 ~~p~~~~y~~~H~Wv~~~~~g~~~vGiT~~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN   80 (127)
T TIGR00527         1 NVPADLRYSKEHEWVRVEGDGTATVGITEFAQDELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVN   80 (127)
T ss_pred             CCCcCcEECCCcEEEEEcCCcEEEEeecHHHhhCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEeh
Confidence            37999999999999998865 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCcccccCCCCc
Q 032928          112 TKLTETPGLVIFSVNS  127 (130)
Q Consensus       112 ~~l~~~P~llN~~~~~  127 (130)
                      .+|.++|++||++|.+
T Consensus        81 ~~l~~~P~lln~~py~   96 (127)
T TIGR00527        81 DALEDSPELVNEDPYG   96 (127)
T ss_pred             HhhhhChHHHhCCCcc
Confidence            9999999999999964

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK13380 glycine cleavage system protein H; Provisional

Probab=100.00  E-value=1.9e-33  Score=209.57  Aligned_cols=96  Identities=42%  Similarity=0.645  Sum_probs=92.2

Q ss_pred             cccCCcceeeC-ceeEEEEeC-CEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEE
Q 032928           32 SSVLDGLKYAS-SHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIE  109 (130)
Q Consensus        32 ~~~p~~~~ys~-~H~Wv~~e~-~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~  109 (130)
                      +.+|++++|++ +|+|++.++ +.++||||+|+|+++|+|++|+||++|++|++||+|++|||+|++++++||++|+|++
T Consensus         7 ~~~p~~~~Y~~~~H~Wv~~~~~g~~~vGitd~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~   86 (144)
T PRK13380          7 CEIPSELRYTIKNHEWLRLEGDGTVTVGITDYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVE   86 (144)
T ss_pred             ccCCccceECCCCeEEEEEcCCCEEEEecCHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEE
Confidence            46899999999 999999886 4899999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccccCcccccCCCCc
Q 032928          110 VNTKLTETPGLVIFSVNS  127 (130)
Q Consensus       110 vN~~l~~~P~llN~~~~~  127 (130)
                      +|.+|.++|++||++|.+
T Consensus        87 vN~~l~~~P~lln~dpy~  104 (144)
T PRK13380         87 VNEALEDSPELVNEDPYG  104 (144)
T ss_pred             EHHhhhhChHHhcCCCCC
Confidence            999999999999999964

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=99.98  E-value=2.1e-32  Score=196.10  Aligned_cols=89  Identities=36%  Similarity=0.609  Sum_probs=86.0

Q ss_pred             eeeCceeEEEE-eCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccC
Q 032928           39 KYASSHEWVKH-EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET  117 (130)
Q Consensus        39 ~ys~~H~Wv~~-e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~  117 (130)
                      ||+++|+|++. +++.++||||+|||+++|+|+|++||++|++|++||+|++||++|++.+|+||++|+|+++|.++.++
T Consensus         1 yy~~~H~Wv~~~~~~~~~vGiT~~aq~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~   80 (110)
T TIGR03077         1 WYSDYHVWILPIHSQVVRLGLTSRMQENLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDD   80 (110)
T ss_pred             CcCCCcEEEEEcCCCEEEEeeCHHHHHhcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhC
Confidence            68999999996 57899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCc
Q 032928          118 PGLVIFSVNS  127 (130)
Q Consensus       118 P~llN~~~~~  127 (130)
                      |++||++|..
T Consensus        81 P~lln~~py~   90 (110)
T TIGR03077        81 TQPINHSPES   90 (110)
T ss_pred             hHhhcCCCCC
Confidence            9999999974

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>PRK00624 glycine cleavage system protein H; Provisional

Probab=99.97  E-value=2.5e-32  Score=196.79  Aligned_cols=90  Identities=33%  Similarity=0.591  Sum_probs=86.9

Q ss_pred             ceeeCceeEEEE-eCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           38 LKYASSHEWVKH-EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        38 ~~ys~~H~Wv~~-e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      ++|+++|+|++. +++.++||||+|||+++|+|+|++||++|++|++||+|++|||+|++.+|+||++|+|+++|.+|.+
T Consensus         2 ~~y~~~H~Wv~~~~~~~~~vGiT~~a~~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~   81 (114)
T PRK00624          2 MWYSDYHVWIEPIHSRIVRLGLTSKMQENLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALED   81 (114)
T ss_pred             cccCCCcEEEEEcCCCEEEEeeCHHHHHhcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence            689999999997 4679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCc
Q 032928          117 TPGLVIFSVNS  127 (130)
Q Consensus       117 ~P~llN~~~~~  127 (130)
                      ||++||++|..
T Consensus        82 ~P~lln~dpy~   92 (114)
T PRK00624         82 DIQPINNAPES   92 (114)
T ss_pred             ChHhhcCCCCC
Confidence            99999999974

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=99.97  E-value=2.9e-31  Score=192.54  Aligned_cols=90  Identities=50%  Similarity=0.817  Sum_probs=79.2

Q ss_pred             ceeeCceeEEEEeC-CEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           38 LKYASSHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        38 ~~ys~~H~Wv~~e~-~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      ++|+++|+|++.++ +.++||||+++|+.+|+|+++++|++|+++++|++|++||+.|++.+|+||++|+|+++|++|.+
T Consensus         1 l~y~~~h~Wv~~~~~g~~~vGit~~a~~~lG~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~   80 (122)
T PF01597_consen    1 LYYTEDHLWVKPEGDGVVRVGITDFAQDELGDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLD   80 (122)
T ss_dssp             SEEETTSEEEEEETTTEEEEEE-HHHHHHH-SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT
T ss_pred             CcCCCCcEEEEECCCCEEEEEECchHhhcCCceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcccccc
Confidence            58999999999986 59999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCc
Q 032928          117 TPGLVIFSVNS  127 (130)
Q Consensus       117 ~P~llN~~~~~  127 (130)
                      +|++||++|.+
T Consensus        81 ~P~lln~~p~~   91 (122)
T PF01597_consen   81 NPELLNSDPYG   91 (122)
T ss_dssp             -TTHHHHSTTT
T ss_pred             ChHHhccCCCC
Confidence            99999999974

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=99.97  E-value=1.2e-31  Score=202.35  Aligned_cols=123  Identities=50%  Similarity=0.776  Sum_probs=107.3

Q ss_pred             hhhhhhhhhhhhhccC---C-CCcccccccccccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCce
Q 032928            5 MWASSTANALRISCAS---K-TPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGAS   80 (130)
Q Consensus         5 ~~~~~~~~~~~~~~~~---~-~~~~~~~r~~~~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~   80 (130)
                      +|+.|.++.+......   . ..+....+.+...+.+++|++.|+||..++++.++|||+||++.||+++||+||++|+.
T Consensus        14 ~~s~r~~a~~~~~~~~~~~~l~ga~~~~~~~p~~~~~~~yt~qHEWV~~~~~vgtvGIt~~A~~~LGdvv~veLPe~Gt~   93 (172)
T KOG3373|consen   14 QWSGRGAAGLKGGMVGRGKQLNGAVSKHPPLPYALSGRKYTSQHEWVLVEGGVGTVGITDFAQEHLGDVVYVELPEVGTE   93 (172)
T ss_pred             hhccccccccCccccCcccccchhhhccCCcccccccccccceeeEEEecCCeeEechhhhhhhhcCceEEEEcCCCCCc
Confidence            5666666655543211   1 22344456667788899999999999999999999999999999999999999999999


Q ss_pred             EecCCeEEEEEEcceeeeeecCcceEEEEeccccccCcccccCCCCc
Q 032928           81 VKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVIFSVNS  127 (130)
Q Consensus        81 v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~P~llN~~~~~  127 (130)
                      |.+||.++.+||.|+.++|+||++|+|+++|++|.++|.++|+||++
T Consensus        94 vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~EnPGlvN~Sp~e  140 (172)
T KOG3373|consen   94 VSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEENPGLVNESPEE  140 (172)
T ss_pred             cccCcceeeeeehhhhhhhhCcCCceEEEeccccccCCCcccCCccc
Confidence            99999999999999999999999999999999999999999999985

>cd06848 GCS_H Glycine cleavage H-protein

Probab=99.96  E-value=4.3e-29  Score=173.57  Aligned_cols=88  Identities=60%  Similarity=0.929  Sum_probs=85.0

Q ss_pred             eeCceeEEEEeCC-EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccCc
Q 032928           40 YASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETP  118 (130)
Q Consensus        40 ys~~H~Wv~~e~~-~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~P  118 (130)
                      |+++|+|++.+++ .++||||+++|+++|+|.++++|++|+.|++||++++||++|++.+|+||++|+|+++|.++.+||
T Consensus         1 y~~~h~W~~~~~~~~~~lGlt~~~~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~p   80 (96)
T cd06848           1 YTKDHEWVKVEGDGIATVGITDYAQDLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDNP   80 (96)
T ss_pred             CCCCCEEEEECCCcEEEEeeCHHHHhhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcCh
Confidence            7889999999865 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCc
Q 032928          119 GLVIFSVNS  127 (130)
Q Consensus       119 ~llN~~~~~  127 (130)
                      ++||++|+.
T Consensus        81 ~~ln~~p~~   89 (96)
T cd06848          81 ELINSDPYG   89 (96)
T ss_pred             HHHhCCCCC
Confidence            999999953

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.32  E-value=4.2e-12  Score=82.83  Aligned_cols=62  Identities=44%  Similarity=0.526  Sum_probs=55.1

Q ss_pred             EEEeeecchhccCCeeEE-EcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccC
Q 032928           55 TVGITDHAQDHLGEVVFV-ELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET  117 (130)
Q Consensus        55 ~vGiTd~a~~~lG~I~~v-~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~  117 (130)
                      ++|++++++ .++..... .++++|+.|++||+++.+|++|+..+++||++|+|+++|.+..++
T Consensus         1 ~~~~~~~~~-~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~   63 (73)
T cd06663           1 TILIPDLAQ-HLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK   63 (73)
T ss_pred             CcccCCCCC-CccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE
Confidence            589999999 66665555 467999999999999999999999999999999999999888765

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=98.88  E-value=4.2e-09  Score=68.65  Aligned_cols=57  Identities=21%  Similarity=0.297  Sum_probs=50.8

Q ss_pred             eeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        58 iTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      +|....+..|.|..+.+ +.|+.|++||+++++|++|+..++.||.+|+|.+++.+..
T Consensus         1 ~~~i~a~~~G~i~~~~v-~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G   57 (70)
T PRK08225          1 MTKVYASMAGNVWKIVV-KVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEG   57 (70)
T ss_pred             CCeEeCCCCEEEEEEEe-CCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCC
Confidence            46777889999999876 6799999999999999999999999999999999876554

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=98.85  E-value=7.2e-09  Score=67.97  Aligned_cols=54  Identities=20%  Similarity=0.313  Sum_probs=48.2

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ...+..|.|..+.+ ++|+.|++||+++++|++|+..++.||++|+|.+++.+..
T Consensus         5 v~a~~~G~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G   58 (71)
T PRK05889          5 VRAEIVASVLEVVV-NEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVG   58 (71)
T ss_pred             EeCCCCEEEEEEEe-CCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCC
Confidence            45678899998866 8899999999999999999999999999999999986554

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=98.79  E-value=9e-09  Score=76.25  Aligned_cols=54  Identities=28%  Similarity=0.454  Sum_probs=48.3

Q ss_pred             EeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928           57 GITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN  111 (130)
Q Consensus        57 GiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN  111 (130)
                      +.+.....+.|.++.+ +.++||+|++||.++.||+||+..+|.||.+|+|.++-
T Consensus        69 ~~~~V~SPm~Gtv~~~-~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Il  122 (140)
T COG0511          69 GGTQVTSPMVGTVYKP-FVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEIL  122 (140)
T ss_pred             cCceEecCcceEEEEE-eeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEE
Confidence            5566677888998875 44999999999999999999999999999999999994

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=98.69  E-value=4.5e-08  Score=64.81  Aligned_cols=42  Identities=31%  Similarity=0.506  Sum_probs=38.5

Q ss_pred             cCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           74 LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        74 lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      +.++|+.|++||+++.||++|+..+++||.+|+|.++..+..
T Consensus        21 ~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G   62 (74)
T PF00364_consen   21 LVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEG   62 (74)
T ss_dssp             SSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTT
T ss_pred             EECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCC
Confidence            459999999999999999999999999999999999976543

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK06748 hypothetical protein; Validated

Probab=98.69  E-value=4.6e-08  Score=67.09  Aligned_cols=55  Identities=15%  Similarity=0.135  Sum_probs=48.0

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEE-cceeeeeecCcceEEEEecccccc
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVES-VKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs-~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      ...++.|.|..+.. ++||.|++||+++.||+ +|...++.||.+|+|.+++.+..+
T Consensus         7 v~sp~~G~I~~w~v-k~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd   62 (83)
T PRK06748          7 VYSPCYGKVEKLFV-RESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQ   62 (83)
T ss_pred             EecCCcEEEEEEEe-CCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCC
Confidence            34678899998855 99999999999999999 889999999999999999866543

>PRK07051 hypothetical protein; Validated

Probab=98.48  E-value=4.2e-07  Score=61.04  Aligned_cols=55  Identities=22%  Similarity=0.277  Sum_probs=45.3

Q ss_pred             ecchhccCCeeE-------EEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           60 DHAQDHLGEVVF-------VELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        60 d~a~~~lG~I~~-------v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ++..+..|.+..       +. .++|+.|++||+++++|++|+..++.||++|+|.+++.+-.
T Consensus         5 ~~~ap~~g~~~~~~~~~~~~~-v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G   66 (80)
T PRK07051          5 EIVSPLPGTFYRRPSPDAPPY-VEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDG   66 (80)
T ss_pred             EEeCCCceEEEecCCCCCCCc-cCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCc
Confidence            445666777665       32 37799999999999999999999999999999999875543

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=98.45  E-value=3.7e-07  Score=67.30  Aligned_cols=57  Identities=14%  Similarity=0.254  Sum_probs=50.0

Q ss_pred             eecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           59 TDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        59 Td~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      ......+-|.|..+.+ ++|+.|++||+++.+|++|+..+|.||.+|+|.+++.+..+
T Consensus        62 ~~v~Ap~~G~V~~i~V-~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd  118 (130)
T PRK06549         62 DAMPSPMPGTILKVLV-AVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQ  118 (130)
T ss_pred             cEEECCCCEEEEEEEe-CCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCC
Confidence            3445678889988877 88999999999999999999999999999999999877653

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=98.42  E-value=8.5e-07  Score=55.59  Aligned_cols=51  Identities=31%  Similarity=0.463  Sum_probs=43.5

Q ss_pred             hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928           63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL  114 (130)
Q Consensus        63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l  114 (130)
                      .+..|.+..+.+ +.|+.|++||+++.+|+.|...++.||.+|.|..++...
T Consensus         4 a~~~G~v~~~~v-~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~   54 (67)
T cd06850           4 APMPGTVVKVLV-KEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKE   54 (67)
T ss_pred             CCccEEEEEEEe-CCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECC
Confidence            355677766554 789999999999999999999999999999999997653

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=98.41  E-value=5.5e-07  Score=72.56  Aligned_cols=48  Identities=25%  Similarity=0.293  Sum_probs=41.8

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      |.|+.+. .++||.|++||+++.||++|+..++.||.+|+|.+++.+..
T Consensus        17 g~~~~~~-~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g   64 (371)
T PRK14875         17 GKVAGWL-VQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEG   64 (371)
T ss_pred             EEEEEEE-cCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCC
Confidence            5566664 48999999999999999999999999999999999876544

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=98.32  E-value=1.2e-06  Score=66.10  Aligned_cols=56  Identities=21%  Similarity=0.348  Sum_probs=49.2

Q ss_pred             eecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           59 TDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        59 Td~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      +.....+.|.|..+.. ++||.|++||.++.+|++|+..++.||.+|+|.+++.+..
T Consensus        85 ~~v~ap~~G~I~~~~V-~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~G  140 (153)
T PRK05641         85 NVVTAPMPGKILRILV-REGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEG  140 (153)
T ss_pred             CEEECCCCeEEEEEEe-CCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCC
Confidence            3445778899988865 9999999999999999999999999999999999986554

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=98.29  E-value=1.5e-06  Score=65.36  Aligned_cols=40  Identities=28%  Similarity=0.460  Sum_probs=37.0

Q ss_pred             CCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928           75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL  114 (130)
Q Consensus        75 p~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l  114 (130)
                      .++|+.|++||+++.||++|+..++.||++|+|+++..+-
T Consensus       102 v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~  141 (155)
T PRK06302        102 VEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVEN  141 (155)
T ss_pred             cCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCC
Confidence            4899999999999999999999999999999999997543

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=98.26  E-value=1.5e-06  Score=65.53  Aligned_cols=55  Identities=22%  Similarity=0.356  Sum_probs=45.4

Q ss_pred             cchhccCCeeEE------EcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           61 HAQDHLGEVVFV------ELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        61 ~a~~~lG~I~~v------~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ....+.|.++..      -+.++|+.|++||.++.||++|+..++.||.+|+|.++..+-.
T Consensus        83 v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g  143 (156)
T TIGR00531        83 VRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENG  143 (156)
T ss_pred             EeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCC
Confidence            346677777643      1348999999999999999999999999999999999975443

The gene name is accB or fabE.

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=98.22  E-value=2.2e-06  Score=69.95  Aligned_cols=41  Identities=20%  Similarity=0.391  Sum_probs=38.0

Q ss_pred             CCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        75 p~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      .++||.|++||.|+.||++|+..+|.||.+|+|.+++.+..
T Consensus       220 VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeG  260 (274)
T PLN02983        220 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDG  260 (274)
T ss_pred             eCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCC
Confidence            38999999999999999999999999999999999986654

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=98.20  E-value=2.6e-06  Score=72.75  Aligned_cols=49  Identities=31%  Similarity=0.386  Sum_probs=42.1

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      |+|... +.++||.|++||+|++||++|...++.||.+|+|.++..+..+
T Consensus        17 G~I~~W-~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~   65 (404)
T COG0508          17 GTIVEW-LKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGD   65 (404)
T ss_pred             EEEEEE-ecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCC
Confidence            445444 4699999999999999999999999999999999999876544

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=98.19  E-value=3.9e-06  Score=73.02  Aligned_cols=70  Identities=24%  Similarity=0.377  Sum_probs=53.1

Q ss_pred             CceeEEEEe---CCEEEEEeeecchhccCC------eeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928           42 SSHEWVKHE---GSVATVGITDHAQDHLGE------VVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT  112 (130)
Q Consensus        42 ~~H~Wv~~e---~~~~~vGiTd~a~~~lG~------I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~  112 (130)
                      .-.-|+++-   .+..    .++..+.+|+      |+.+. .++||.|++||+|++||++|+..+|.||.+|+|.++..
T Consensus        76 ~~~~~~~~~~~~~~~m----~~i~mP~lg~~~~eG~I~~w~-v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv  150 (463)
T PLN02226         76 TLQRWVRPFSSESGDT----VEAVVPHMGESITDGTLATFL-KKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLV  150 (463)
T ss_pred             hhhhcccccccccCCc----eEEecCCCCCCcceEEEEEEE-eCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEe
Confidence            345788862   1211    3566666664      55553 59999999999999999999999999999999999876


Q ss_pred             cccc
Q 032928          113 KLTE  116 (130)
Q Consensus       113 ~l~~  116 (130)
                      +..+
T Consensus       151 ~eGd  154 (463)
T PLN02226        151 KEGD  154 (463)
T ss_pred             CCCC
Confidence            6543

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=98.15  E-value=4.1e-06  Score=74.86  Aligned_cols=54  Identities=22%  Similarity=0.399  Sum_probs=47.8

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ...++.|.|+.+.+ ++|+.|++||++++||++|+..+|.||++|+|.++..+..
T Consensus       528 v~apm~G~V~~~~V-~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~G  581 (596)
T PRK14042        528 ITVAIPGSIIAIHV-SAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKG  581 (596)
T ss_pred             EecCcceEEEEEEe-CCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCc
Confidence            45677889998855 8899999999999999999999999999999999876554

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=98.15  E-value=4e-06  Score=72.10  Aligned_cols=48  Identities=25%  Similarity=0.369  Sum_probs=41.6

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      |.|+.+. .++||.|++||++++||++|+..++.||.+|+|.++..+..
T Consensus        59 g~I~~w~-v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G  106 (418)
T PTZ00144         59 GTVVEWK-KKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEG  106 (418)
T ss_pred             EEEEEEE-eCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCC
Confidence            4466553 48999999999999999999999999999999999876554

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=98.14  E-value=4e-06  Score=74.62  Aligned_cols=55  Identities=22%  Similarity=0.373  Sum_probs=47.5

Q ss_pred             ecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ....++.|.|+.+.+ ++|++|++||+++.||++|+..++.||++|+|.+++.+..
T Consensus       519 ~v~ap~~G~v~~~~V-~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~G  573 (582)
T TIGR01108       519 PVTAPIAGSIVKVKV-SEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVG  573 (582)
T ss_pred             eEeCCccEEEEEEEe-CCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCC
Confidence            445567788888744 9999999999999999999999999999999999986544

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.10  E-value=7.2e-06  Score=72.92  Aligned_cols=76  Identities=21%  Similarity=0.247  Sum_probs=60.5

Q ss_pred             eeCceeEEEEeCCE------EEEEee--------ecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcce
Q 032928           40 YASSHEWVKHEGSV------ATVGIT--------DHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISG  105 (130)
Q Consensus        40 ys~~H~Wv~~e~~~------~~vGiT--------d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG  105 (130)
                      +..+|+|+...+..      -.+|..        ....+|-|.|+.|.+ +.|++|.+||+++++|+|||...|.+|.+|
T Consensus       543 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~aPMpG~v~~v~V-~~G~~V~~G~~lvvlEAMKME~~l~A~~dG  621 (645)
T COG4770         543 RAGGGLTLFWGGGSPRIAELDKLGGAKVAAASSGELLAPMPGTVVSVAV-KEGQEVSAGDLLVVLEAMKMENTLRAPRDG  621 (645)
T ss_pred             ecCCceEEecCCcCcccccccccccccccCCCCCceecCCCceEEEEEe-cCCCEecCCCeEEEeEehhcccceecCcCc
Confidence            34667888765431      223331        144688999999977 899999999999999999999999999999


Q ss_pred             EEEEecccccc
Q 032928          106 EVIEVNTKLTE  116 (130)
Q Consensus       106 ~Vv~vN~~l~~  116 (130)
                      +|..+|.+..+
T Consensus       622 ~V~~v~v~~Gd  632 (645)
T COG4770         622 VVAKLAVAEGD  632 (645)
T ss_pred             EEEEEEecCCC
Confidence            99999877654

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=98.07  E-value=6.6e-06  Score=73.46  Aligned_cols=52  Identities=19%  Similarity=0.321  Sum_probs=45.9

Q ss_pred             hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ..+.|.|..+.+ ++|+.|++||++++||++|+..+|.||.+|+|.+++.+..
T Consensus       529 Ap~~G~I~~~~V-~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~G  580 (593)
T PRK14040        529 APLAGNIFKVIV-TEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEG  580 (593)
T ss_pred             CCccEEEEEEEe-CCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCC
Confidence            455677887755 9999999999999999999999999999999999986654

>TIGR02712 urea_carbox urea carboxylase

Probab=98.02  E-value=8.4e-06  Score=77.66  Aligned_cols=58  Identities=22%  Similarity=0.365  Sum_probs=49.9

Q ss_pred             EeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           57 GITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        57 GiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      |......++.|.|+.+.+ ++||+|++||+++.||++|+..+|.||.+|+|.+++.+..
T Consensus      1131 ~~~~v~a~~~G~v~~~~v-~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G 1188 (1201)
T TIGR02712      1131 GAEQVESEYAGNFWKVLV-EVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPG 1188 (1201)
T ss_pred             CCcEEeCCceEEEEEEEe-CCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCC
Confidence            334455677899998855 8999999999999999999999999999999999986554

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=97.98  E-value=1.3e-05  Score=76.18  Aligned_cols=54  Identities=24%  Similarity=0.399  Sum_probs=47.8

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      .+..+.|.|+.+.+ ++|++|++||++++||++|+..+|.||++|+|.+++.+..
T Consensus      1077 I~a~~~G~v~~~~v-~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G 1130 (1143)
T TIGR01235      1077 VGAPMPGVIIEVKV-SSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAG 1130 (1143)
T ss_pred             eecCCCcEEEEEEe-CCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCC
Confidence            44677888988866 8899999999999999999999999999999999986654

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=97.91  E-value=2e-05  Score=67.39  Aligned_cols=48  Identities=19%  Similarity=0.230  Sum_probs=41.3

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      |.|..+ +.++|+.|++||+++.||++|+..++.||.+|+|.++..+..
T Consensus        17 g~i~~w-~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G   64 (407)
T PRK05704         17 ATIATW-HKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEG   64 (407)
T ss_pred             EEEEEE-EeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCC
Confidence            445555 348999999999999999999999999999999998876554

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=97.88  E-value=2.4e-05  Score=69.83  Aligned_cols=53  Identities=30%  Similarity=0.457  Sum_probs=46.1

Q ss_pred             chhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ..++.|.|..+.+ ++|++|++||+++.||++|+..+|.||++|+|.+++.+..
T Consensus       526 ~Ap~~G~v~~~~V-~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G  578 (592)
T PRK09282        526 TSPMPGTVVKVKV-KEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEG  578 (592)
T ss_pred             eCCCcEEEEEEEe-CCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCC
Confidence            3455677887755 8999999999999999999999999999999999986654

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=97.87  E-value=1.7e-05  Score=73.11  Aligned_cols=51  Identities=33%  Similarity=0.508  Sum_probs=46.6

Q ss_pred             chhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccc
Q 032928           62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK  113 (130)
Q Consensus        62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~  113 (130)
                      +..+.|.|+.|.+ +.|++|++||+++++|+||+...|.+|++|+|.++-..
T Consensus      1083 gApmpG~Vv~v~V-~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~ 1133 (1149)
T COG1038        1083 GAPMPGVVVEVKV-KKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVK 1133 (1149)
T ss_pred             CCCCCCceEEEEE-ccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEec
Confidence            3678999999876 89999999999999999999999999999999999543

>PRK12999 pyruvate carboxylase; Reviewed

Probab=97.85  E-value=2.2e-05  Score=74.54  Aligned_cols=54  Identities=30%  Similarity=0.442  Sum_probs=47.5

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ...++.|.|+.+.+ ++|+.|++||+++.+|++|+..+|.||++|+|.+++.+..
T Consensus      1079 v~apm~G~v~~i~v-~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g 1132 (1146)
T PRK12999       1079 VGAPMPGSVVTVLV-KEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAG 1132 (1146)
T ss_pred             EeCCceEEEEEEEc-CCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCC
Confidence            44567788888866 8999999999999999999999999999999999986543

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=97.82  E-value=3.6e-05  Score=65.86  Aligned_cols=48  Identities=27%  Similarity=0.281  Sum_probs=41.1

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      |.|+.+ +.++||.|++||++++||++|+..++.||.+|+|.++..+..
T Consensus        15 g~i~~w-~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG   62 (403)
T TIGR01347        15 GTVAEW-HKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEG   62 (403)
T ss_pred             EEEEEE-EeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCC
Confidence            445554 458999999999999999999999999999999998876554

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=97.71  E-value=5.8e-05  Score=67.32  Aligned_cols=48  Identities=19%  Similarity=0.351  Sum_probs=41.2

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      |.|... +.++||.|++||+++.||++|+..++.||.+|+|.++..+..
T Consensus       150 g~i~~w-~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G  197 (590)
T TIGR02927       150 GTITQW-LKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEED  197 (590)
T ss_pred             EEEEEE-EeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCC
Confidence            345554 458999999999999999999999999999999998876554

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=97.68  E-value=6.2e-05  Score=66.51  Aligned_cols=55  Identities=31%  Similarity=0.420  Sum_probs=44.5

Q ss_pred             ecchhccCC-----eeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           60 DHAQDHLGE-----VVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        60 d~a~~~lG~-----I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ++.+..+|+     |..+ +.++||.|++||++++||++|+..+|.||.+|+|.+++.+..
T Consensus       118 ~~~~P~~g~~~eg~i~~w-~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G  177 (546)
T TIGR01348       118 EVTVPDIGDIEKVTVIEV-LVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVG  177 (546)
T ss_pred             EEeCCCCCCcceeEEeEE-eeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCC
Confidence            444555554     4443 358999999999999999999999999999999999886653

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=97.64  E-value=9.4e-05  Score=66.35  Aligned_cols=48  Identities=31%  Similarity=0.324  Sum_probs=41.2

Q ss_pred             cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928           66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL  114 (130)
Q Consensus        66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l  114 (130)
                      -|.|..+. .++|+.|++||+|+.||++|+..++.||.+|+|.++..+.
T Consensus        14 eg~i~~~~-v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~   61 (633)
T PRK11854         14 EVEVTEIL-VKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKV   61 (633)
T ss_pred             eEEEEEEE-eCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCC
Confidence            35666654 4899999999999999999999999999999999887633

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=97.57  E-value=0.00015  Score=65.16  Aligned_cols=47  Identities=30%  Similarity=0.367  Sum_probs=39.4

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL  114 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l  114 (130)
                      |.|+.+. .++||.|++||++++||++|+..++.||.+|+|.++..+.
T Consensus       219 g~v~~w~-v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~  265 (633)
T PRK11854        219 VEVTEVM-VKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNV  265 (633)
T ss_pred             eEEEEEE-ecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCC
Confidence            4444442 4889999999999999999999999999999998876544

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=97.53  E-value=0.00038  Score=42.61  Aligned_cols=48  Identities=29%  Similarity=0.407  Sum_probs=40.6

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      |.|..+.. ..|+.+.+|++++.+|+.|...++.+|.+|+|.+.+....
T Consensus        15 g~i~~~~~-~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g   62 (74)
T cd06849          15 GTIVEWLV-KEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEG   62 (74)
T ss_pred             EEEEEEEE-CCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCc
Confidence            45555444 7899999999999999999999999999999998885543

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=97.49  E-value=0.00019  Score=63.22  Aligned_cols=47  Identities=34%  Similarity=0.458  Sum_probs=39.8

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL  114 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l  114 (130)
                      |.|... +.++||.|++||+++.||++|+..++.||.+|+|.++..+.
T Consensus       133 g~i~~w-~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~  179 (547)
T PRK11855        133 VEVIEW-LVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKV  179 (547)
T ss_pred             eEEeEE-EeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCC
Confidence            334443 34899999999999999999999999999999999876554

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=97.48  E-value=0.00082  Score=47.42  Aligned_cols=87  Identities=13%  Similarity=0.148  Sum_probs=57.0

Q ss_pred             cccccccCCcceeeCceeEEEEe-CCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceE
Q 032928           28 SRCFSSVLDGLKYASSHEWVKHE-GSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGE  106 (130)
Q Consensus        28 ~r~~~~~p~~~~ys~~H~Wv~~e-~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~  106 (130)
                      ||+.-..|+...++.+-...+.. -+.+.|=|    ++..|.-.. -+.++||+|++||.|+..+. -....++||+||+
T Consensus         3 F~GGihp~~~K~~s~~~~i~~~~~p~~v~ipL----~qh~G~~~~-p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~   76 (101)
T PF13375_consen    3 FRGGIHPPEHKELSKDKPIEEAPLPKKVVIPL----RQHIGAPAE-PVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGT   76 (101)
T ss_pred             cCCccCCCCccccccCCCeEECCCcCEEEEEC----cccCCCcce-EEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeE
Confidence            44444444444445555544433 34555544    344554333 24589999999999999975 4467999999999


Q ss_pred             EEEeccccccCccc
Q 032928          107 VIEVNTKLTETPGL  120 (130)
Q Consensus       107 Vv~vN~~l~~~P~l  120 (130)
                      |.++.....-++..
T Consensus        77 V~~I~~~~~~~g~~   90 (101)
T PF13375_consen   77 VTAIEKRPIPHGSK   90 (101)
T ss_pred             EEEEeeeEcCCCCC
Confidence            99998777665544

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=97.38  E-value=0.00035  Score=59.96  Aligned_cols=45  Identities=27%  Similarity=0.285  Sum_probs=39.3

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT  112 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~  112 (130)
                      |+|..+ +.++|+.|++||+++.+|++|+..++.||.+|+|.++..
T Consensus        13 g~i~~w-~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v   57 (416)
T PLN02528         13 CELLRW-FVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINF   57 (416)
T ss_pred             EEEEEE-EeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEe
Confidence            455555 348999999999999999999999999999999988765

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=97.38  E-value=0.00011  Score=62.80  Aligned_cols=63  Identities=30%  Similarity=0.372  Sum_probs=47.7

Q ss_pred             CEEEEEeeecchhcc-CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           52 SVATVGITDHAQDHL-GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        52 ~~~~vGiTd~a~~~l-G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      +.+++-.-.|+-..- |++-.. +.++||.|++++.+++||++|...++.||.+|+|.+++.+-.
T Consensus        71 s~vtv~vP~faESiteG~l~~~-lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~g  134 (457)
T KOG0559|consen   71 SVVTVEVPPFAESITEGDLAQW-LKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDG  134 (457)
T ss_pred             ceeEEecCCcccccccchHHHH-hhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCC
Confidence            355565545544332 444422 468999999999999999999999999999999999965443

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=97.37  E-value=0.00039  Score=61.53  Aligned_cols=48  Identities=33%  Similarity=0.432  Sum_probs=41.7

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      |.|+.+. .++|+.|++||++++||++|+..++.||.+|+|.+++.+..
T Consensus        14 g~i~~~~-v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~G   61 (546)
T TIGR01348        14 GEVIEVL-VKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVG   61 (546)
T ss_pred             eEEEEEE-eCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCC
Confidence            5566653 48999999999999999999999999999999998887553

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=97.37  E-value=0.00037  Score=61.44  Aligned_cols=48  Identities=31%  Similarity=0.386  Sum_probs=41.5

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      |.|..+.+ ++|+.|++||+++.||++|+..++.||.+|+|.+++.+..
T Consensus        16 g~i~~~~v-~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~G   63 (547)
T PRK11855         16 VEVIEWLV-KEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVG   63 (547)
T ss_pred             EEEEEEEc-CCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCC
Confidence            45665543 9999999999999999999999999999999999886543

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=97.33  E-value=0.00047  Score=58.53  Aligned_cols=49  Identities=35%  Similarity=0.511  Sum_probs=41.5

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      |.|... +.++|+.+++||+++.||++|...++.||.+|+|.+++.+..+
T Consensus        17 g~i~~w-~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~   65 (411)
T PRK11856         17 GEIVEW-LVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGD   65 (411)
T ss_pred             EEEEEE-EeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCC
Confidence            345544 3489999999999999999999999999999999988766554

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=97.29  E-value=0.00043  Score=59.74  Aligned_cols=50  Identities=20%  Similarity=0.239  Sum_probs=42.5

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccC
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET  117 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~  117 (130)
                      |+|..+ +.++|+.+++||+++.||++|+..++.||.+|+|.+++.+..+.
T Consensus        14 g~i~~w-~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~   63 (435)
T TIGR01349        14 GNLAKW-LKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTK   63 (435)
T ss_pred             EEEEEE-EeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCE
Confidence            344443 34899999999999999999999999999999999988777653

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=97.16  E-value=0.00071  Score=60.07  Aligned_cols=48  Identities=23%  Similarity=0.236  Sum_probs=40.8

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      |+|... +.++||.|++||+++.||++|...++.||.+|+|.++..+..
T Consensus       127 g~I~~W-~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG  174 (539)
T PLN02744        127 GNIARW-LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG  174 (539)
T ss_pred             eEEEEE-EecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCC
Confidence            445543 358999999999999999999999999999999988875554

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=97.01  E-value=0.0021  Score=48.64  Aligned_cols=51  Identities=24%  Similarity=0.330  Sum_probs=37.9

Q ss_pred             hccCCeeEEEcCCCCceEecCCeEEEEEEcce-eeeeecCcceEEEEeccccc
Q 032928           64 DHLGEVVFVELPETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        64 ~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~-~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ..-|-.++. ...+|++|.+||.++.+.|.|. +.-++||++|+|+.+++.=.
T Consensus        86 ~veG~~v~~-i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p~  137 (150)
T PF09891_consen   86 PVEGYQVYP-IVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIPW  137 (150)
T ss_dssp             EEESSEEEE-SS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEETT
T ss_pred             EecceEEEE-EcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecCC
Confidence            444666654 5689999999999999999996 77799999999999997654

; PDB: 3D4R_D.

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=96.99  E-value=0.0014  Score=57.19  Aligned_cols=49  Identities=24%  Similarity=0.263  Sum_probs=41.2

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      |.|..+ +.++|+.+++||.++.||++|+..++.||.+|+|.++..+..+
T Consensus        17 g~i~~w-~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~   65 (464)
T PRK11892         17 GTLAKW-LKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGT   65 (464)
T ss_pred             eEEEEE-EecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCC
Confidence            334443 3488999999999999999999999999999999888776653

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=96.99  E-value=0.0015  Score=58.35  Aligned_cols=45  Identities=18%  Similarity=0.281  Sum_probs=39.1

Q ss_pred             eeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928           69 VVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL  114 (130)
Q Consensus        69 I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l  114 (130)
                      |..+. .++|+.|+.||+++.+|++|+..++.||.+|.|.+++.+.
T Consensus        19 i~~w~-v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~   63 (590)
T TIGR02927        19 ITQWL-KAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEE   63 (590)
T ss_pred             EEEEE-ECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecC
Confidence            54443 5899999999999999999999999999999998876644

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=96.91  E-value=0.0013  Score=60.46  Aligned_cols=51  Identities=27%  Similarity=0.434  Sum_probs=46.8

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT  112 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~  112 (130)
                      .+.++.|+|..+.+ ++|++|++||+++++-++|+..-+.||.+|+|.++..
T Consensus      1109 igAPMpG~vieikv-k~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v 1159 (1176)
T KOG0369|consen 1109 IGAPMPGTVIEIKV-KEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHV 1159 (1176)
T ss_pred             ccCCCCCceEEEEE-ecCceecCCCceEeeecceeeeeecCCCCceeeEEEe
Confidence            34789999999988 8899999999999999999999999999999998863

>KOG3266 consensus Predicted glycine cleavage system H protein [Amino acid transport and metabolism]

Probab=96.77  E-value=0.0054  Score=46.88  Aligned_cols=85  Identities=19%  Similarity=0.259  Sum_probs=61.3

Q ss_pred             CceeEEEEeCCEEEEEeeec--chhccCCeeEEEcCCCC-----------------ceEecCCeEEEEEEcc-eeeeeec
Q 032928           42 SSHEWVKHEGSVATVGITDH--AQDHLGEVVFVELPETG-----------------ASVKQGGGFGVVESVK-ATSDVNS  101 (130)
Q Consensus        42 ~~H~Wv~~e~~~~~vGiTd~--a~~~lG~I~~v~lp~vG-----------------~~v~~Gd~l~~IEs~K-~~~~l~S  101 (130)
                      .+|.-.+..+..+.|++-.-  +.+.-+.|..++. ++|                 ..++...+++.+-..+ ...-++|
T Consensus        33 ~D~~i~~HsnricvI~la~~hp~l~~g~~i~sv~~-~ign~dRsqnkVSGK~KkgAl~lq~~s~Lc~~~~a~g~~y~V~s  111 (172)
T KOG3266|consen   33 YDHCIYQHSNRICVITLAPSHPALQSGKTIKSVTF-QIGNCDRSQNKVSGKGKKGALILQELSPLCKFKTADGSTYVVRS  111 (172)
T ss_pred             CCceEEecCCceEEEEecCCCchhhcccceeeeec-ccccchhhhheeccccccccEeeccCCcceeEEecCCCeEEEee
Confidence            44665566677888887543  3344455666665 333                 3345556677776666 6788999


Q ss_pred             CcceEEEEeccccccCcccccCCCCc
Q 032928          102 PISGEVIEVNTKLTETPGLVIFSVNS  127 (130)
Q Consensus       102 PvsG~Vv~vN~~l~~~P~llN~~~~~  127 (130)
                      =|-|++++||+.+..+|+++++.|+.
T Consensus       112 cVrG~LvEvN~rl~~~P~ll~~~pd~  137 (172)
T KOG3266|consen  112 CVRGTLVEVNERLKTTPDLLREAPDN  137 (172)
T ss_pred             eeceeEEEeehhhccCcHHHHhCCCc
Confidence            99999999999999999999998874

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=96.74  E-value=0.002  Score=56.22  Aligned_cols=58  Identities=22%  Similarity=0.234  Sum_probs=48.8

Q ss_pred             EEEEEeeecchhc-cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928           53 VATVGITDHAQDH-LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN  111 (130)
Q Consensus        53 ~~~vGiTd~a~~~-lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN  111 (130)
                      ..+|+|-..---| -|.|+... .++||++.+||.|++||++|+..++.++-+|.+-+|-
T Consensus        38 h~~i~MPALSPTMeeGnIvsW~-kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKIL   96 (470)
T KOG0557|consen   38 HKTFSMPALSPTMEEGNIVSWK-KKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKIL   96 (470)
T ss_pred             ceEeecCCCCccccCCceeeEe-eccCCccCCCceEEEEecccceeeeeeccCCeeeeee
Confidence            4567776555444 59999874 4999999999999999999999999999999998874

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=96.62  E-value=0.002  Score=55.09  Aligned_cols=57  Identities=25%  Similarity=0.350  Sum_probs=47.5

Q ss_pred             EeeecchhccCC-eeEEEc----CCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccc
Q 032928           57 GITDHAQDHLGE-VVFVEL----PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK  113 (130)
Q Consensus        57 GiTd~a~~~lG~-I~~v~l----p~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~  113 (130)
                      |+-+|.+.++|+ |-.|++    .++||.|++=|+++.|.|+|+..+|.|-.+|+|..+.-.
T Consensus        63 gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~  124 (474)
T KOG0558|consen   63 GVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHS  124 (474)
T ss_pred             ceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeC
Confidence            445666777777 666665    589999999999999999999999999999999887543

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=96.28  E-value=0.003  Score=56.23  Aligned_cols=55  Identities=25%  Similarity=0.323  Sum_probs=49.1

Q ss_pred             chhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccC
Q 032928           62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET  117 (130)
Q Consensus        62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~  117 (130)
                      ..++.|-|..|-+ ++|+.+++||+++++|++|+...+.+|-+|+|..++.++.++
T Consensus       605 ~aPMpG~Iekv~V-kpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~  659 (670)
T KOG0238|consen  605 VAPMPGIIEKVLV-KPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT  659 (670)
T ss_pred             ecCCCCeeeeeec-cchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc
Confidence            4567788887744 999999999999999999999999999999999999988765

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=96.16  E-value=0.0059  Score=53.09  Aligned_cols=36  Identities=31%  Similarity=0.394  Sum_probs=30.5

Q ss_pred             cCCCCceEecCCeEEEEEEcce-eeeeecCcceEEEEec
Q 032928           74 LPETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVN  111 (130)
Q Consensus        74 lp~vG~~v~~Gd~l~~IEs~K~-~~~l~SPvsG~Vv~vN  111 (130)
                      +.++||+|++||+|+.  +... -..++||+||+|.+|+
T Consensus        45 ~V~~GD~V~~Gq~I~~--~~~~~s~~~hspvSGtV~~I~   81 (448)
T PRK05352         45 KVKEGDKVKKGQPLFE--DKKNPGVKFTSPASGTVVAIN   81 (448)
T ss_pred             EeCcCCEEcCCCEeEe--cCCCceEEEEcCCCeEEEEEc
Confidence            3489999999999994  4443 4889999999999997

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=95.95  E-value=0.015  Score=49.47  Aligned_cols=53  Identities=15%  Similarity=0.149  Sum_probs=41.6

Q ss_pred             hccCCeeEEEcCCCCceEecCCeEEEEEEcc------------------------------------------------e
Q 032928           64 DHLGEVVFVELPETGASVKQGGGFGVVESVK------------------------------------------------A   95 (130)
Q Consensus        64 ~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K------------------------------------------------~   95 (130)
                      ..-|.|..+....+|++|++||+|++|++..                                                .
T Consensus       129 rv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~  208 (409)
T PRK09783        129 RAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQT  208 (409)
T ss_pred             CcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCC
Confidence            3457777766468999999999999998421                                                1


Q ss_pred             eeeeecCcceEEEEecccccc
Q 032928           96 TSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        96 ~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      -..|+||++|.|.+.|....+
T Consensus       209 ~~~I~AP~dGvV~~~~v~~G~  229 (409)
T PRK09783        209 RFTLKAPIDGVITAFDLRAGM  229 (409)
T ss_pred             cEEEECCCCeEEEEEECCCCC
Confidence            247999999999999987763

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=95.94  E-value=0.01  Score=48.44  Aligned_cols=38  Identities=29%  Similarity=0.327  Sum_probs=30.5

Q ss_pred             CCCCceEecCCeEEEEEEcce-eeeeecCcceEEEEecccc
Q 032928           75 PETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVNTKL  114 (130)
Q Consensus        75 p~vG~~v~~Gd~l~~IEs~K~-~~~l~SPvsG~Vv~vN~~l  114 (130)
                      .++||+|++||+++.  ..|. -.-+.||+||+|.+||.-.
T Consensus        45 VkeGD~Vk~Gq~LF~--dK~~p~v~ftsPvsG~V~~I~RG~   83 (257)
T PF05896_consen   45 VKEGDRVKAGQPLFE--DKKNPGVKFTSPVSGTVKAINRGE   83 (257)
T ss_pred             eccCCEEeCCCeeEe--eCCCCCcEEecCCCeEEEEEecCC
Confidence            389999999999984  3332 4558999999999999743

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=95.77  E-value=0.012  Score=53.80  Aligned_cols=80  Identities=13%  Similarity=0.083  Sum_probs=48.5

Q ss_pred             cccccccCCcceeeCceeEEEE-eCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc-eeeeeecCcce
Q 032928           28 SRCFSSVLDGLKYASSHEWVKH-EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK-ATSDVNSPISG  105 (130)
Q Consensus        28 ~r~~~~~p~~~~ys~~H~Wv~~-e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K-~~~~l~SPvsG  105 (130)
                      |++.-..|+...++.+..--.. -...+.|=|    ++.+|.-... +.++||+|.+||+|+.  +.. ....++||+||
T Consensus        10 f~gGihp~~~k~~s~~~~i~~~~~p~~~~ipl----~qhiG~~~~~-~V~~GD~V~~GQ~i~~--~~~~~s~~vhApvSG   82 (695)
T PRK05035         10 FPGGIHPPEMKTQSNGTPIRQAPLPQRLVIPL----KQHIGAEGEL-CVKVGDRVLKGQPLTQ--GDGRMSLPVHAPTSG   82 (695)
T ss_pred             CCCCcCCCcccccccCCCccccCCCCEEEEEC----ccCCCCCCcc-eeCcCCEEcCCCEeee--cCCCceeEEeCCCCe
Confidence            3344444555445544331111 123455544    3344543322 3489999999999994  444 35889999999


Q ss_pred             EEEEecccc
Q 032928          106 EVIEVNTKL  114 (130)
Q Consensus       106 ~Vv~vN~~l  114 (130)
                      +|++|+...
T Consensus        83 ~V~~I~~~~   91 (695)
T PRK05035         83 TVVAIEPHP   91 (695)
T ss_pred             EEeeecccc
Confidence            999998653

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=95.66  E-value=0.012  Score=50.68  Aligned_cols=39  Identities=18%  Similarity=0.444  Sum_probs=32.6

Q ss_pred             cCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccc
Q 032928           74 LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK  113 (130)
Q Consensus        74 lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~  113 (130)
                      +.++||+|++||.|+.-+. ..-..++||+||+|.+|+..
T Consensus        46 ~V~~Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i~~~   84 (435)
T TIGR01945        46 IVKVGDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAIEER   84 (435)
T ss_pred             eeCCCCEECCCCEeccCCC-cceeeeecCCCeEEEEeccc
Confidence            3489999999999998833 24678999999999999853

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=95.64  E-value=0.011  Score=51.41  Aligned_cols=38  Identities=29%  Similarity=0.372  Sum_probs=31.7

Q ss_pred             cCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928           74 LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT  112 (130)
Q Consensus        74 lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~  112 (130)
                      +.++||+|++||+|+.-... .-..++||+||+|.+++.
T Consensus        44 ~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        44 KVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             EeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence            34899999999999976433 457899999999999965

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=94.95  E-value=0.075  Score=43.18  Aligned_cols=50  Identities=24%  Similarity=0.339  Sum_probs=38.3

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEE--cceeeeeecCcceEEEEeccccccC
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVES--VKATSDVNSPISGEVIEVNTKLTET  117 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs--~K~~~~l~SPvsG~Vv~vN~~l~~~  117 (130)
                      +-+... ..+.|+.|++||.++.|..  .....+++||.+|.|........-.
T Consensus       227 ~G~~~~-~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~~~~~v~  278 (287)
T cd06251         227 GGLLRS-LVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRNNLPLVN  278 (287)
T ss_pred             CeEEEE-ecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEecCCCccC
Confidence            444433 4589999999999999976  3456899999999999877655433

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=94.79  E-value=0.03  Score=34.31  Aligned_cols=32  Identities=28%  Similarity=0.289  Sum_probs=26.6

Q ss_pred             hhccCCeeEEEcCCCCceEecCCeEEEEEEcce
Q 032928           63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKA   95 (130)
Q Consensus        63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~   95 (130)
                      .+.-|.|..+.+ +.|+.|++||+|+++++...
T Consensus         7 ~~~~G~V~~v~V-~~G~~VkkGd~L~~ld~~~~   38 (50)
T PF13533_consen    7 APVSGRVESVYV-KEGQQVKKGDVLLVLDSPDL   38 (50)
T ss_pred             CCCCEEEEEEEe-cCCCEEcCCCEEEEECcHHH
Confidence            455788888866 89999999999999987643

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=94.77  E-value=0.037  Score=49.18  Aligned_cols=44  Identities=23%  Similarity=0.283  Sum_probs=39.0

Q ss_pred             CCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccCcccc
Q 032928           76 ETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLV  121 (130)
Q Consensus        76 ~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~P~ll  121 (130)
                      ++||+|.+||+++.=|+  ....++||+||+|.++-.+..-+|+-+
T Consensus        50 kvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~~~~~~~~sgl   93 (529)
T COG4656          50 KVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIEPANFPHPSGL   93 (529)
T ss_pred             eeCCEEeeCceeeccCC--ceeeeeCCCCceeeeeeecccCCcccC
Confidence            89999999999998877  889999999999999987777777644

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=94.63  E-value=0.1  Score=42.85  Aligned_cols=44  Identities=18%  Similarity=0.231  Sum_probs=36.5

Q ss_pred             EcCCCCceEecCCeEEEEEE---cceeeeeecCcceEEEEecccccc
Q 032928           73 ELPETGASVKQGGGFGVVES---VKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        73 ~lp~vG~~v~~Gd~l~~IEs---~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      -..+.|+.|++||.++.|-.   .....+++||.+|.|...+....-
T Consensus       242 ~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~~~p~v  288 (298)
T cd06253         242 PAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLREYPLV  288 (298)
T ss_pred             ECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEeecCCee
Confidence            34688999999999999965   345889999999999998876543

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=94.43  E-value=0.13  Score=43.00  Aligned_cols=35  Identities=14%  Similarity=0.249  Sum_probs=29.1

Q ss_pred             eeecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928           58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV   93 (130)
Q Consensus        58 iTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~   93 (130)
                      ..+...+.-|.|..+.+ ++|+.|++||.|+.|++.
T Consensus        61 ~~~l~~~v~G~V~~i~v-~~G~~VkkGqvLa~ld~~   95 (385)
T PRK09859         61 VAEIRPQVGGIIIKRNF-IEGDKVNQGDSLYQIDPA   95 (385)
T ss_pred             EEEEeccCcEEEEEEEc-CCcCEecCCCEEEEECcH
Confidence            34555677899998877 899999999999999864

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=94.36  E-value=0.068  Score=44.68  Aligned_cols=33  Identities=24%  Similarity=0.240  Sum_probs=27.4

Q ss_pred             ecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928           60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV   93 (130)
Q Consensus        60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~   93 (130)
                      +...+.-|.|..+.+ ++|+.|++||.|+.|++.
T Consensus        65 ~l~~~v~G~V~~v~v-~~Gd~VkkGq~La~ld~~   97 (385)
T PRK09578         65 EVRARVAGIVTARTY-EEGQEVKQGAVLFRIDPA   97 (385)
T ss_pred             EEeccCcEEEEEEEC-CCCCEEcCCCEEEEECCH
Confidence            444667799988855 899999999999999874

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=94.10  E-value=0.13  Score=40.77  Aligned_cols=31  Identities=19%  Similarity=0.369  Sum_probs=24.8

Q ss_pred             chhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928           62 AQDHLGEVVFVELPETGASVKQGGGFGVVESV   93 (130)
Q Consensus        62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~   93 (130)
                      ..+.-|.|..+.+ ++|+.|++||+|+.+++.
T Consensus        30 ~a~~~G~V~~i~v-~~G~~V~kG~~L~~l~~~   60 (322)
T TIGR01730        30 AAEVAGKITKISV-REGQKVKKGQVLARLDDD   60 (322)
T ss_pred             EccccEEEEEEEc-CCCCEEcCCCEEEEECCH
Confidence            3455588887755 799999999999999763

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=94.09  E-value=0.11  Score=42.33  Aligned_cols=34  Identities=29%  Similarity=0.356  Sum_probs=30.3

Q ss_pred             cCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928           74 LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN  111 (130)
Q Consensus        74 lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN  111 (130)
                      ..+.|+.|++||.++.|++    .+++||++|.|.-+=
T Consensus       178 ~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGli  211 (256)
T TIGR03309       178 TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLI  211 (256)
T ss_pred             ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEe
Confidence            5689999999999999976    699999999998763

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=93.73  E-value=0.21  Score=42.61  Aligned_cols=34  Identities=15%  Similarity=0.276  Sum_probs=28.1

Q ss_pred             eeecchhccCCeeEEEcCCCCceEecCCeEEEEEE
Q 032928           58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVES   92 (130)
Q Consensus        58 iTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs   92 (130)
                      ......+.-|.|..+.+ ++|+.|++||.|+.|.+
T Consensus        87 ~v~v~~~vsG~V~~i~v-~eG~~VkkGq~La~ld~  120 (415)
T PRK11556         87 TVTVRSRVDGQLMALHF-QEGQQVKAGDLLAEIDP  120 (415)
T ss_pred             EEEEEccccEEEEEEEC-CCCCEecCCCEEEEECc
Confidence            34445677899998876 89999999999999965

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=93.67  E-value=0.13  Score=42.77  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=27.3

Q ss_pred             ecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928           60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV   93 (130)
Q Consensus        60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~   93 (130)
                      ....+.-|.|..+.+ ++|+.|++||.|+.|++.
T Consensus        63 ~l~a~~~G~V~~v~v-~~G~~V~kG~~L~~ld~~   95 (370)
T PRK11578         63 DVGAQVSGQLKTLSV-AIGDKVKKDQLLGVIDPE   95 (370)
T ss_pred             EEecccceEEEEEEc-CCCCEEcCCCEEEEECcH
Confidence            334566799998875 899999999999999873

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=93.61  E-value=0.19  Score=41.93  Aligned_cols=42  Identities=14%  Similarity=0.080  Sum_probs=34.9

Q ss_pred             cCCCCceEecCCeEEEEEE----cceeeeeecCcceEEEEeccccc
Q 032928           74 LPETGASVKQGGGFGVVES----VKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        74 lp~vG~~v~~Gd~l~~IEs----~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ..+.|+.|++||.++.|-.    .+...+++||.+|.|...+..-.
T Consensus       269 ~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~~~~~  314 (325)
T TIGR02994       269 MIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARHFPGL  314 (325)
T ss_pred             ecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEeCCCc
Confidence            4588999999999999965    33578899999999999876543

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=93.48  E-value=0.22  Score=41.02  Aligned_cols=40  Identities=15%  Similarity=0.205  Sum_probs=34.4

Q ss_pred             CCCCceEecCCeEEEEEEc----ceeeeeecCcceEEEEecccc
Q 032928           75 PETGASVKQGGGFGVVESV----KATSDVNSPISGEVIEVNTKL  114 (130)
Q Consensus        75 p~vG~~v~~Gd~l~~IEs~----K~~~~l~SPvsG~Vv~vN~~l  114 (130)
                      .+.|+.|++||.++.|-..    +...+++||.+|.|...+...
T Consensus       259 ~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~~~  302 (316)
T cd06252         259 VDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRPPG  302 (316)
T ss_pred             cCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeCCC
Confidence            4789999999999999653    457899999999999988655

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=93.29  E-value=0.25  Score=40.12  Aligned_cols=41  Identities=22%  Similarity=0.405  Sum_probs=34.6

Q ss_pred             CCCCceEecCCeEEEEEE--cceeeeeecCcceEEEEeccccc
Q 032928           75 PETGASVKQGGGFGVVES--VKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        75 p~vG~~v~~Gd~l~~IEs--~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      .+.|+.|++||.++.|-.  .....+++||.+|.|...+..-.
T Consensus       238 ~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~~~  280 (288)
T cd06254         238 VKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTATLP  280 (288)
T ss_pred             cCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCCCc
Confidence            478999999999999944  45688999999999999887543

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=93.19  E-value=0.22  Score=40.72  Aligned_cols=50  Identities=18%  Similarity=0.246  Sum_probs=37.3

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEE--cceeeeeecCcceEEEEec
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVES--VKATSDVNSPISGEVIEVN  111 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs--~K~~~~l~SPvsG~Vv~vN  111 (130)
                      +.....|-+..-. .+.|+.|++||.++.|-.  .....+++||.+|.|...|
T Consensus       233 ~v~Ap~~Gi~~~~-~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~~  284 (293)
T cd06255         233 WVAAIHGGLFEPS-VPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGIH  284 (293)
T ss_pred             EEecCCCeEEEEe-cCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee
Confidence            3333344455443 488999999999999965  3457789999999999984

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>COG4072 Uncharacterized protein conserved in archaea [Function unknown]

Probab=92.34  E-value=0.22  Score=37.57  Aligned_cols=47  Identities=23%  Similarity=0.510  Sum_probs=39.1

Q ss_pred             cCCCCceEecCCeEEEEEEcce-eeeeecCcceEEEEeccccccCccc
Q 032928           74 LPETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVNTKLTETPGL  120 (130)
Q Consensus        74 lp~vG~~v~~Gd~l~~IEs~K~-~~~l~SPvsG~Vv~vN~~l~~~P~l  120 (130)
                      +..+|+++.+||+++.+-+-|. +.=+.+|+.|+|+-+-+--...|+.
T Consensus       106 IaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~E~t~kRpnY  153 (161)
T COG4072         106 IADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYIDEFTNKRPNY  153 (161)
T ss_pred             eecccchhcCCCceeEEEecccceEEecCCCCcEEEEEeecccCCCce
Confidence            4588999999999999999885 6668999999999998755555553

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=92.32  E-value=0.19  Score=49.87  Aligned_cols=47  Identities=17%  Similarity=0.263  Sum_probs=41.0

Q ss_pred             hccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928           64 DHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN  111 (130)
Q Consensus        64 ~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN  111 (130)
                      +..|+.+... .+.|+.|++||+-++||.||++.++.++.+|.|.-+-
T Consensus       691 Ps~GKLl~yl-VedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~~i~  737 (2196)
T KOG0368|consen  691 PSPGKLLQYL-VEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQLIK  737 (2196)
T ss_pred             CCCccceEEE-ecCCCceecCCeeeehehhheeeeeeccCCceEEEec
Confidence            4468877764 4899999999999999999999999999999998664

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=92.21  E-value=0.15  Score=43.90  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=29.5

Q ss_pred             CCCceEecCCeEEEEEEccee-eeeecCcceEEEEeccc
Q 032928           76 ETGASVKQGGGFGVVESVKAT-SDVNSPISGEVIEVNTK  113 (130)
Q Consensus        76 ~vG~~v~~Gd~l~~IEs~K~~-~~l~SPvsG~Vv~vN~~  113 (130)
                      ++||.|++|+++++  ..|.. .-+.||+||+|+++|.-
T Consensus        46 ~~gD~VkkGq~LfE--dKknpgv~~Tap~sG~V~aI~RG   82 (447)
T COG1726          46 REGDAVKKGQVLFE--DKKNPGVVFTAPVSGKVTAIHRG   82 (447)
T ss_pred             ccCCeeeccceeee--cccCCCeEEeccCCceEEEeecc
Confidence            78999999999974  45543 44889999999999863

>COG3608 Predicted deacylase [General function prediction only]

Probab=91.24  E-value=0.38  Score=40.67  Aligned_cols=51  Identities=22%  Similarity=0.361  Sum_probs=39.5

Q ss_pred             hccCCeeEEEcCCCCceEecCCeEEEEEEc---ceeeeeecCcceEEEEecccccc
Q 032928           64 DHLGEVVFVELPETGASVKQGGGFGVVESV---KATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        64 ~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~---K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      ...|-|.+  +.+.||+|++||.++.|-..   +...++.+|++|.|...-..-+-
T Consensus       262 p~~G~v~~--~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~~v  315 (331)
T COG3608         262 PAGGLVEF--LVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLRLV  315 (331)
T ss_pred             CCCceEEE--eecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecccc
Confidence            44454443  35889999999999999764   78899999999999987654433

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=89.85  E-value=0.82  Score=38.59  Aligned_cols=42  Identities=14%  Similarity=0.194  Sum_probs=33.1

Q ss_pred             cCCCCceEecCCeEEEEEE--cceeeee--ecCcceEEEEeccccc
Q 032928           74 LPETGASVKQGGGFGVVES--VKATSDV--NSPISGEVIEVNTKLT  115 (130)
Q Consensus        74 lp~vG~~v~~Gd~l~~IEs--~K~~~~l--~SPvsG~Vv~vN~~l~  115 (130)
                      ..++|+.|++||.++.|-.  ...+.++  .||.+|.|..++....
T Consensus       303 ~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~~~~~  348 (359)
T cd06250         303 RAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARASRRF  348 (359)
T ss_pred             ecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEecCCcc
Confidence            3488999999999999964  2334454  9999999999876554

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=88.55  E-value=1.9  Score=31.44  Aligned_cols=50  Identities=22%  Similarity=0.356  Sum_probs=34.0

Q ss_pred             eeCceeE-EEEeCC---EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEE
Q 032928           40 YASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVES   92 (130)
Q Consensus        40 ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs   92 (130)
                      |...|-. ++.+++   .+.||+.....+--|=-.++   +.|++|++||+++.+--
T Consensus        50 ~~T~HA~~i~~~~G~eiLiHiGidTv~l~g~gF~~~v---k~Gd~V~~G~~l~~~D~  103 (124)
T cd00210          50 FPTKHAIGIESDSGVEILIHIGIDTVKLNGEGFTSHV---EEGQRVKQGDKLLEFDL  103 (124)
T ss_pred             ccCCCEEEEEeCCCcEEEEEeeeeeeecCCCceEEEe---cCCCEEcCCCEEEEEcH
Confidence            4455654 454444   58999987766533333333   89999999999998853

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=88.33  E-value=1.9  Score=31.35  Aligned_cols=51  Identities=18%  Similarity=0.314  Sum_probs=34.7

Q ss_pred             eeeCceeE-EEEeCC---EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEE
Q 032928           39 KYASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVES   92 (130)
Q Consensus        39 ~ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs   92 (130)
                      .|...|-. ++.+++   .+.|||.....+--|=-.   +.+.|++|++||+++++-.
T Consensus        49 v~~T~HA~gi~~~~G~evLiHiGidTV~L~G~gF~~---~v~~Gd~V~~G~~l~~~D~  103 (121)
T TIGR00830        49 IFPTKHAFGIESDSGVEILIHIGIDTVKLNGEGFTS---HVEEGQRVKKGDPLLEFDL  103 (121)
T ss_pred             EccCCCEEEEEeCCCcEEEEEeeeceeecCCCceEE---EecCCCEEcCCCEEEEEcH
Confidence            34556754 444444   589999877665333222   3499999999999999854

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=87.68  E-value=0.8  Score=38.72  Aligned_cols=43  Identities=14%  Similarity=0.102  Sum_probs=34.0

Q ss_pred             eCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928           50 EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV   93 (130)
Q Consensus        50 e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~   93 (130)
                      ++..+.-.......+.-|.|..+.+ ++|+.|++||+|+.|++.
T Consensus        53 ~~a~v~~~~v~v~a~v~G~V~~v~V-~~Gd~VkkGqvL~~LD~~   95 (390)
T PRK15136         53 DDAYVAGNQVQIMSQVSGSVTKVWA-DNTDFVKEGDVLVTLDPT   95 (390)
T ss_pred             CCcEEeeeEEEEeccCCeEEEEEEc-CCCCEECCCCEEEEECcH
Confidence            3334444556666788899999976 899999999999999874

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=86.88  E-value=1.2  Score=36.58  Aligned_cols=40  Identities=15%  Similarity=0.189  Sum_probs=31.4

Q ss_pred             EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928           53 VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV   93 (130)
Q Consensus        53 ~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~   93 (130)
                      .+.--.....-+.-|.|..+.+ ++|+.|++||+|+.|++.
T Consensus        43 ~v~~~~v~v~~~v~G~V~~v~V-~~G~~VkkGq~L~~ld~~   82 (346)
T PRK10476         43 YIDADVVHVASEVGGRIVELAV-TENQAVKKGDLLFRIDPR   82 (346)
T ss_pred             EEEeeeEEEcccCceEEEEEEe-CCCCEEcCCCEEEEECcH
Confidence            3333444555677799998866 999999999999999986

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=86.62  E-value=1.2  Score=35.99  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             EEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928           54 ATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV   93 (130)
Q Consensus        54 ~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~   93 (130)
                      +.-.......+.-|.|..+.+ ++|+.|++||+|+.|++.
T Consensus        38 v~~~~~~v~a~~~G~V~~i~v-~~G~~V~kGq~L~~ld~~   76 (334)
T TIGR00998        38 VKANQLQVSSQVSGSVIEVNV-DDTDYVKQGDVLVRLDPT   76 (334)
T ss_pred             EEcceEEEcccCceEEEEEEe-CCCCEEcCCCEEEEECch
Confidence            333444455577899998866 899999999999999986

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=86.61  E-value=0.83  Score=29.13  Aligned_cols=30  Identities=20%  Similarity=0.303  Sum_probs=24.6

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVE   91 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE   91 (130)
                      ...+.-|.|..+.. +.|+.|..|++++.||
T Consensus        41 v~s~~~G~v~~~~~-~~G~~V~~g~~l~~ie   70 (70)
T PRK08225         41 IVAEEAGTVKKINV-QEGDFVNEGDVLLEIE   70 (70)
T ss_pred             EeCCCCEEEEEEEe-cCCCEECCCCEEEEEC
Confidence            44456788888766 7899999999999987

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=84.49  E-value=3.6  Score=31.54  Aligned_cols=52  Identities=19%  Similarity=0.311  Sum_probs=35.1

Q ss_pred             eeCceeE-EEEeCC---EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928           40 YASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK   94 (130)
Q Consensus        40 ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K   94 (130)
                      |...|-- ++.+++   .+.|||.....+  |+=... +.+.||+|++||+|+.+--..
T Consensus        72 f~T~HAigi~t~~G~eiLIHiGiDTV~L~--G~gF~~-~Vk~Gd~Vk~G~~L~~~D~~~  127 (169)
T PRK09439         72 FETNHAFSIESDSGVELFVHFGIDTVELK--GEGFKR-IAEEGQRVKVGDPIIEFDLPL  127 (169)
T ss_pred             cCCCCEEEEEeCCCcEEEEEEeecccccC--CCceEE-EecCCCEEeCCCEEEEEcHHH
Confidence            4456754 455544   588999776554  543322 349999999999999986543

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=83.67  E-value=1.3  Score=35.88  Aligned_cols=31  Identities=13%  Similarity=0.152  Sum_probs=26.2

Q ss_pred             hhcc---CCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928           63 QDHL---GEVVFVELPETGASVKQGGGFGVVESVK   94 (130)
Q Consensus        63 ~~~l---G~I~~v~lp~vG~~v~~Gd~l~~IEs~K   94 (130)
                      ...-   |.|..|.+ ++|+.|++||+|+.|+...
T Consensus        18 ~~~~~~~G~V~~i~V-~eG~~V~~G~~L~~ld~~~   51 (327)
T TIGR02971        18 APSSGGTDRIKKLLV-AEGDRVQAGQVLAELDSRP   51 (327)
T ss_pred             CCCCCCCcEEEEEEc-cCCCEecCCcEEEEecCcH
Confidence            3455   89999876 8999999999999998753

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PRK06748 hypothetical protein; Validated

Probab=83.65  E-value=2.6  Score=28.78  Aligned_cols=34  Identities=12%  Similarity=0.035  Sum_probs=28.0

Q ss_pred             ecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928           60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK   94 (130)
Q Consensus        60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K   94 (130)
                      +.-.+.-|.|..+.. ++|+.+..|++++.||.+-
T Consensus        44 ei~Ap~~G~v~~i~v-~~Gd~V~vG~~la~I~~~~   77 (83)
T PRK06748         44 EIKVGISGYIESLEV-VEGQAIADQKLLITVRDDL   77 (83)
T ss_pred             EEecCCCEEEEEEEe-CCCCEECCCCEEEEEECCe
Confidence            556677899988854 8999999999999997554

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=82.94  E-value=1.6  Score=28.99  Aligned_cols=21  Identities=14%  Similarity=0.292  Sum_probs=17.4

Q ss_pred             cCCCCceEecCCeEEEEEEcc
Q 032928           74 LPETGASVKQGGGFGVVESVK   94 (130)
Q Consensus        74 lp~vG~~v~~Gd~l~~IEs~K   94 (130)
                      ..++||+|++||++++|=+..
T Consensus        37 ~~k~Gd~V~~Gd~l~~i~~~~   57 (75)
T PF07831_consen   37 HKKVGDRVEKGDPLATIYAND   57 (75)
T ss_dssp             SS-TTSEEBTTSEEEEEEESS
T ss_pred             cCcCcCEECCCCeEEEEEcCC
Confidence            468999999999999997654

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>PRK12784 hypothetical protein; Provisional

Probab=82.57  E-value=5.2  Score=27.40  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=29.3

Q ss_pred             EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcce
Q 032928           53 VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKA   95 (130)
Q Consensus        53 ~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~   95 (130)
                      .+.+|++       |.|..+++ ++|++|..+..++.+|.+-.
T Consensus        45 ~v~vGiS-------G~I~~v~V-e~Gq~i~~dtlL~~~edDll   79 (84)
T PRK12784         45 KVAVGIS-------GNIRLVNV-VVGQQIHTDTLLVRLEDDLL   79 (84)
T ss_pred             EEEEeee-------eeEEEEEe-ecCceecCCcEEEEEeeceE
Confidence            6888886       66777777 89999999999999997654

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=80.30  E-value=5.4  Score=30.38  Aligned_cols=67  Identities=19%  Similarity=0.238  Sum_probs=43.2

Q ss_pred             eeeCcee-EEEEeCC---EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEE
Q 032928           39 KYASSHE-WVKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVI  108 (130)
Q Consensus        39 ~ys~~H~-Wv~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv  108 (130)
                      .|...|- =++.+++   .+.|||+...++  |+-... +.+.|++|++||+++.+--+.--..=+|.++-.|+
T Consensus        56 iFpTkHAigi~t~~GvEiLiHiGiDTV~L~--GegF~~-~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVv  126 (156)
T COG2190          56 IFPTKHAIGIETDEGVEILIHIGIDTVKLN--GEGFES-LVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVV  126 (156)
T ss_pred             EeeCCcEEEEEcCCCcEEEEEeceeeEEEC--CcceEE-EeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEE
Confidence            4556664 3344444   589999887665  774433 45999999999999998654433333444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
1hpc_A	131	Refined Structures At 2 Angstroms And 2.2 Angstroms		5e-39
2ka7_A	124	Nmr Solution Structure Of Tm0212 At 40 C Length = 1		7e-22
3mxu_A	143	Crystal Structure Of Glycine Cleavage System Protei		1e-21
1onl_A	128	Crystal Structure Of Thermus Thermophilus Hb8 H-Pro		4e-21
1zko_A	136	Crystal Structure Of Glycine Cleavage System H Prot		5e-21
3a7a_B	128	Crystal Structure Of E. Coli Lipoate-protein Ligase		7e-21
3a8i_E	129	Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex Len		3e-20
2edg_A	130	Solution Structure Of The Gcv_h Domain From Mouse G		5e-20
3klr_A	125	Bovine H-Protein At 0.88 Angstrom Resolution Length		2e-19
3hgb_A	155	Crystal Structure Of Glycine Cleavage System Protei		1e-18
3ift_A	142	Crystal Structure Of Glycine Cleavage System Protei		2e-18
3tzu_A	137	Crystal Structure Of A Glycine Cleavage System H Pr		2e-12

>pdb|1HPC|A Chain A, Refined Structures At 2 Angstroms And 2.2 Angstroms Of The Two Forms Of The H-Protein, A Lipoamide-Containing Protein Of The Glycine Decarboxylase Length = 131

Iteration: 1
 Score =  155 bits (393), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 77/90 (85%), Positives = 81/90 (90%)
Query: 32  SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91
           S+VLDGLKYA SHEWVKHEGSVAT+GITDHAQDHLGEVVFVELPE G SV +G GFG VE
Sbjct: 1   SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVE 60
Query: 92  SVKATSDVNSPISGEVIEVNTKLTETPGLV 121
           SVKATSDVNSPISGEVIEVNT LT  PGL+
Sbjct: 61  SVKATSDVNSPISGEVIEVNTGLTGKPGLI 90

>pdb|2KA7|A Chain A, Nmr Solution Structure Of Tm0212 At 40 C Length = 124

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 61/83 (73%)
Query: 39  KYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSD 98
           KY  +HEWV  E  VATVGIT+HAQ+ LG+VV+V+LPE G  VK+G     +ESVKA +D
Sbjct: 5   KYTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAAD 64
Query: 99  VNSPISGEVIEVNTKLTETPGLV 121
           V +P+SG+++EVN KL   P L+
Sbjct: 65  VYAPLSGKIVEVNEKLDTEPELI 87

>pdb|3MXU|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H From Henselae Length = 143

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 59/82 (71%)
Query: 40  YASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDV 99
           +   HEW+  EG V TVGITD+AQ+ LG++VF++LP+ G  + +G    VVESVKA SDV
Sbjct: 27  FTQDHEWLSVEGQVVTVGITDYAQEQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDV 86
Query: 100 NSPISGEVIEVNTKLTETPGLV 121
            +P+ GEV+E+N  L E+P LV
Sbjct: 87  YAPLDGEVVEINAALAESPELV 108

>pdb|1ONL|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 H-Protein Of The Glycine Cleavage System Length = 128

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 58/82 (70%)
Query: 40  YASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDV 99
           Y  +HEW   EG    VGITD+AQD LG+VV+VELPE G  V++G    VVESVK  SD+
Sbjct: 9   YTKTHEWALPEGDTVLVGITDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDI 68
Query: 100 NSPISGEVIEVNTKLTETPGLV 121
            +P++GE++EVN  L +TP LV
Sbjct: 69  YAPVAGEIVEVNLALEKTPELV 90

>pdb|1ZKO|A Chain A, Crystal Structure Of Glycine Cleavage System H Protein (Tm0212) From Thermotoga Maritima At 1.65 A Resolution Length = 136

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 60/82 (73%)
Query: 40  YASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDV 99
           Y  +HEWV  E  VATVGIT+HAQ+ LG+VV+V+LPE G  VK+G     +ESVKA +DV
Sbjct: 18  YTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADV 77
Query: 100 NSPISGEVIEVNTKLTETPGLV 121
            +P+SG+++EVN KL   P L+
Sbjct: 78  YAPLSGKIVEVNEKLDTEPELI 99

>pdb|3A7A|B Chain B, Crystal Structure Of E. Coli Lipoate-protein Ligase A In Complex With Octyl-amp And Apoh-protein Length = 128

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 32  SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVV 90
           S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V 
Sbjct: 1   SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVA 60
Query: 91  ESVKATSDVNSPISGEVIEVNTKLTETPGLV 121
           ESVKA SD+ +P+SGE++ VN  L+++P LV
Sbjct: 61  ESVKAASDIYAPVSGEIVAVNDALSDSPELV 91

>pdb|3A8I|E Chain E, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex Length = 129

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
Query: 31  FSSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGV 89
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V
Sbjct: 1   MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAV 60
Query: 90  VESVKATSDVNSPISGEVIEVNTKLTETPGLV 121
            ESV A SD+ +P+SGE++ VN  L+++P LV
Sbjct: 61  AESVXAASDIYAPVSGEIVAVNDALSDSPELV 92

>pdb|2EDG|A Chain A, Solution Structure Of The Gcv_h Domain From Mouse Glycine Length = 130

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 58/85 (68%)
Query: 37  GLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKAT 96
           G K+   HEW+  E  + TVGI++ AQ+ LG+VV+  LPE G  +K+   FG +ESVKA 
Sbjct: 7   GRKFTEKHEWITTEEGIGTVGISNFAQEALGDVVYCSLPEVGTKLKKQEEFGALESVKAA 66
Query: 97  SDVNSPISGEVIEVNTKLTETPGLV 121
           S++ SP+SGEV EVN  L E PGLV
Sbjct: 67  SELYSPLSGEVTEVNEALAENPGLV 91

>pdb|3KLR|A Chain A, Bovine H-Protein At 0.88 Angstrom Resolution Length = 125

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 56/83 (67%)
Query: 39  KYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSD 98
           K+   HEWV  E  V TVGI++ AQ+ LG+VV+  LPE G  + +   FG +ESVKA S+
Sbjct: 4   KFTEKHEWVTTENGVGTVGISNFAQEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASE 63
Query: 99  VNSPISGEVIEVNTKLTETPGLV 121
           + SP+SGEV E+N  L E PGLV
Sbjct: 64  LYSPLSGEVTEINKALAENPGLV 86

>pdb|3HGB|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H From Mycobacterium Tuberculosis Length = 155

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 30  CFSSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFG 88
             S +   L Y + HEW++  G     VGITD+AQ  LG+VVFV+LP  G +V  G  FG
Sbjct: 21  SMSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFG 80
Query: 89  VVESVKATSDVNSPISGEVIEVNTKLTETPGLV 121
            VES K+ SD+ +PISG+V EVN+ L  TP LV
Sbjct: 81  EVESTKSVSDLYAPISGKVSEVNSDLDGTPQLV 113

>pdb|3IFT|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H From Mycobacterium Tuberculosis, Using X-Rays From The Compact L Source Length = 142

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 32  SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVV 90
           S +   L Y + HEW++  G     VGITD+AQ  LG+VVFV+LP  G +V  G  FG V
Sbjct: 10  SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEV 69
Query: 91  ESVKATSDVNSPISGEVIEVNTKLTETPGLV 121
           ES K+ SD+ +PISG+V EVN+ L  TP LV
Sbjct: 70  ESTKSVSDLYAPISGKVSEVNSDLDGTPQLV 100

>pdb|3TZU|A Chain A, Crystal Structure Of A Glycine Cleavage System H Protein (Gcvh) From Mycobacterium Marinum Length = 137

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 40  YASSHEWVKHEGSVAT------VGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93
           Y + HEW+      AT      VGIT  A + LG++VFV+LPE G +V  G   G VES 
Sbjct: 16  YTADHEWIDIAPGAATPDGPVRVGITSVAVEALGDLVFVQLPEVGETVSAGESCGEVEST 75
Query: 94  KATSDVNSPISGEVIEVNTKLTETPGLV 121
           K  SD+ +P SG+++EVNT   + P  +
Sbjct: 76  KTVSDLIAPASGQIVEVNTAAVDDPATI 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
1hpc_A	131	H protein of the glycine cleavage system; transit	5e-52
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	8e-51
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	2e-50
3klr_A	125	Glycine cleavage system H protein; antiparallel be	1e-49
3mxu_A	143	Glycine cleavage system H protein; seattle structu	3e-49
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	4e-49
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	4e-49
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	4e-47

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A* Length = 131

 Score =  159 bits (405), Expect = 5e-52
 Identities = 77/90 (85%), Positives = 81/90 (90%)

Query: 32  SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91
           S+VLDGLKYA SHEWVKHEGSVAT+GITDHAQDHLGEVVFVELPE G SV +G GFG VE
Sbjct: 1   SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVE 60

Query: 92  SVKATSDVNSPISGEVIEVNTKLTETPGLV 121
           SVKATSDVNSPISGEVIEVNT LT  PGL+
Sbjct: 61  SVKATSDVNSPISGEVIEVNTGLTGKPGLI 90

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A Length = 136

 Score =  157 bits (398), Expect = 8e-51
 Identities = 47/91 (51%), Positives = 62/91 (68%)

Query: 31  FSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVV 90
               L   KY  +HEWV  E  VATVGIT+HAQ+ LG+VV+V+LPE G  VK+G     +
Sbjct: 9   HHHHLKMKKYTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASI 68

Query: 91  ESVKATSDVNSPISGEVIEVNTKLTETPGLV 121
           ESVKA +DV +P+SG+++EVN KL   P L+
Sbjct: 69  ESVKAAADVYAPLSGKIVEVNEKLDTEPELI 99

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1 Length = 128

 Score =  155 bits (395), Expect = 2e-50
 Identities = 45/89 (50%), Positives = 59/89 (66%)

Query: 33  SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVES 92
            +     Y  +HEW   EG    VGITD+AQD LG+VV+VELPE G  V++G    VVES
Sbjct: 2   DIPKDRFYTKTHEWALPEGDTVLVGITDYAQDALGDVVYVELPEVGRVVEKGEAVAVVES 61

Query: 93  VKATSDVNSPISGEVIEVNTKLTETPGLV 121
           VK  SD+ +P++GE++EVN  L +TP LV
Sbjct: 62  VKTASDIYAPVAGEIVEVNLALEKTPELV 90

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} PDB: 2edg_A Length = 125

 Score =  153 bits (389), Expect = 1e-49
 Identities = 43/84 (51%), Positives = 56/84 (66%)

Query: 38  LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATS 97
            K+   HEWV  E  V TVGI++ AQ+ LG+VV+  LPE G  + +   FG +ESVKA S
Sbjct: 3   RKFTEKHEWVTTENGVGTVGISNFAQEALGDVVYCSLPEVGTKLNKQEEFGALESVKAAS 62

Query: 98  DVNSPISGEVIEVNTKLTETPGLV 121
           ++ SP+SGEV E+N  L E PGLV
Sbjct: 63  ELYSPLSGEVTEINKALAENPGLV 86

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae} Length = 143

 Score =  153 bits (388), Expect = 3e-49
 Identities = 43/84 (51%), Positives = 59/84 (70%)

Query: 38  LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATS 97
             +   HEW+  EG V TVGITD+AQ+ LG++VF++LP+ G  + +G    VVESVKA S
Sbjct: 25  TYFTQDHEWLSVEGQVVTVGITDYAQEQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAAS 84

Query: 98  DVNSPISGEVIEVNTKLTETPGLV 121
           DV +P+ GEV+E+N  L E+P LV
Sbjct: 85  DVYAPLDGEVVEINAALAESPELV 108

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E* Length = 128

 Score =  152 bits (386), Expect = 4e-49
 Identities = 47/91 (51%), Positives = 65/91 (71%), Gaps = 1/91 (1%)

Query: 32  SSVLDGLKYASSHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVV 90
           S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V 
Sbjct: 1   SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVA 60

Query: 91  ESVKATSDVNSPISGEVIEVNTKLTETPGLV 121
           ESVKA SD+ +P+SGE++ VN  L+++P LV
Sbjct: 61  ESVKAASDIYAPVSGEIVAVNDALSDSPELV 91

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A Length = 155

 Score =  153 bits (388), Expect = 4e-49
 Identities = 46/104 (44%), Positives = 60/104 (57%), Gaps = 1/104 (0%)

Query: 19  ASKTPAFALSRCFSSVLDGLKYASSHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPET 77
            +           S +   L Y + HEW++  G     VGITD+AQ  LG+VVFV+LP  
Sbjct: 10  GTLEAQTQGPGSMSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVI 69

Query: 78  GASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLV 121
           G +V  G  FG VES K+ SD+ +PISG+V EVN+ L  TP LV
Sbjct: 70  GTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLV 113

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum} Length = 137

 Score =  147 bits (373), Expect = 4e-47
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 32  SSVLDGLKYASSHEWVKHEGSVAT------VGITDHAQDHLGEVVFVELPETGASVKQGG 85
             +     Y + HEW+      AT      VGIT  A + LG++VFV+LPE G +V  G 
Sbjct: 8   RKIPGDRSYTADHEWIDIAPGAATPDGPVRVGITSVAVEALGDLVFVQLPEVGETVSAGE 67

Query: 86  GFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLV 121
             G VES K  SD+ +P SG+++EVNT   + P  +
Sbjct: 68  SCGEVESTKTVSDLIAPASGQIVEVNTAAVDDPATI 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	100.0
3mxu_A	143	Glycine cleavage system H protein; seattle structu	100.0
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	100.0
3klr_A	125	Glycine cleavage system H protein; antiparallel be	100.0
1hpc_A	131	H protein of the glycine cleavage system; transit	100.0
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	100.0
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	100.0
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	99.97
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	98.72
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	98.72
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	98.65
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	98.63
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	98.61
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	98.61
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	98.59
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	98.58
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	98.54
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	98.54
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	98.52
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	98.5
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	98.48
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	98.42
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	98.42
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	98.41
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	98.39
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	98.37
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	98.36
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	98.33
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	98.28
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	98.24
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	98.1
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	98.09
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	97.79
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	97.78
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	97.73
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	97.59
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	97.54
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	96.84
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	96.18
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	96.07
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	96.0
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	95.92
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	95.91
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	95.71
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	95.6
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	95.12
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	94.37
2qj8_A	332	MLR6093 protein; structural genomics, joint center	93.97
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	89.3
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	80.64
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	80.29

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=100.00  E-value=1e-36  Score=228.53  Aligned_cols=97  Identities=47%  Similarity=0.757  Sum_probs=93.6

Q ss_pred             ccccCCcceeeCceeEEEEeCC-EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEE
Q 032928           31 FSSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIE  109 (130)
Q Consensus        31 ~~~~p~~~~ys~~H~Wv~~e~~-~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~  109 (130)
                      ++++|++++|+++|+||+.+++ .++||||+|||+.+|+|+||+||++|++|++||+|++|||.|++++|+||++|+|++
T Consensus        22 m~~~P~~l~Yt~~HeWv~~egdg~~~VGITd~Aq~~LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~Vve  101 (155)
T 3hgb_A           22 MSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSE  101 (155)
T ss_dssp             CCCCCTTCEECTTSEEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEE
T ss_pred             cccCcccceECCCCEEEEEcCCcEEEEeeCHHHHHhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEE
Confidence            4569999999999999999876 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccccCcccccCCCCc
Q 032928          110 VNTKLTETPGLVIFSVNS  127 (130)
Q Consensus       110 vN~~l~~~P~llN~~~~~  127 (130)
                      +|++|.++|++||++|.+
T Consensus       102 vN~~L~d~PeliN~dPyg  119 (155)
T 3hgb_A          102 VNSDLDGTPQLVNSDPYG  119 (155)
T ss_dssp             ECTHHHHCTTHHHHCTTT
T ss_pred             EhhhhhhChHhhccCCCC
Confidence            999999999999999974

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=100.00  E-value=3.8e-36  Score=222.95  Aligned_cols=95  Identities=45%  Similarity=0.791  Sum_probs=91.8

Q ss_pred             ccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928           33 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT  112 (130)
Q Consensus        33 ~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~  112 (130)
                      ..+++++|+++|+||+.+|+.++||||+|||+++|+|+||+||++|++|++||+|++|||+|++++|+||++|+|+++|+
T Consensus        20 ~~~~~l~Yt~~HeWv~~eg~~~~VGITd~Aq~~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~   99 (143)
T 3mxu_A           20 GSMSKTYFTQDHEWLSVEGQVVTVGITDYAQEQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINA   99 (143)
T ss_dssp             TCCCEEEECSSSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECG
T ss_pred             chhccceeCCCCEEEEEcCCEEEEeeCHHHHhhcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCcccccCCCCc
Q 032928          113 KLTETPGLVIFSVNS  127 (130)
Q Consensus       113 ~l~~~P~llN~~~~~  127 (130)
                      +|.++|++||++|.+
T Consensus       100 ~L~d~PeliN~dPy~  114 (143)
T 3mxu_A          100 ALAESPELVNQKAET  114 (143)
T ss_dssp             GGGTCTTHHHHSTTT
T ss_pred             hhhhChHhhhCCCCC
Confidence            999999999999975

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=100.00  E-value=1.1e-36  Score=224.41  Aligned_cols=96  Identities=36%  Similarity=0.631  Sum_probs=91.5

Q ss_pred             cccCCcceeeCceeEEE------EeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcce
Q 032928           32 SSVLDGLKYASSHEWVK------HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISG  105 (130)
Q Consensus        32 ~~~p~~~~ys~~H~Wv~------~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG  105 (130)
                      +++|++++|+++|+||+      .+++.++||||+|||+++|+|+||+||++|++|++||+|++|||+|++++|+||++|
T Consensus         8 ~~~P~~l~Yt~~HeWv~~~~~~~~e~~~~~VGITd~Aq~~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG   87 (137)
T 3tzu_A            8 RKIPGDRSYTADHEWIDIAPGAATPDGPVRVGITSVAVEALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASG   87 (137)
T ss_dssp             --CCTTSEECTTSEEESCCTTCCCCSSCEEEEECHHHHHHHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEE
T ss_pred             ccCCccceeCCCCEEEEccCcccccCCEEEEeeCHHHHhhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcce
Confidence            45699999999999999      678899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccccccCcccccCCCCc
Q 032928          106 EVIEVNTKLTETPGLVIFSVNS  127 (130)
Q Consensus       106 ~Vv~vN~~l~~~P~llN~~~~~  127 (130)
                      +|+++|++|.++|++||++|.+
T Consensus        88 ~VvevN~~l~~~P~liN~dPy~  109 (137)
T 3tzu_A           88 QIVEVNTAAVDDPATIATDPYG  109 (137)
T ss_dssp             EEEEECHHHHHCTHHHHHCTTT
T ss_pred             EEEEehhhhhcChhhhcCCCCc
Confidence            9999999999999999999974

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=100.00  E-value=9.5e-36  Score=216.53  Aligned_cols=91  Identities=48%  Similarity=0.787  Sum_probs=89.1

Q ss_pred             cceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           37 GLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        37 ~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      +++|+++|+||+.+|+.++||||+|||+++|+|+||+||++|++|++||+|++|||+|++++|+||++|+|+++|.+|.+
T Consensus         2 ~l~Yt~~HeWv~~e~~~~~vGITd~Aq~~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~   81 (125)
T 3klr_A            2 VRKFTEKHEWVTTENGVGTVGISNFAQEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE   81 (125)
T ss_dssp             CCEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred             CcEeCCCCEEEEEcCCEEEEeeCHHHHhhCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCc
Q 032928          117 TPGLVIFSVNS  127 (130)
Q Consensus       117 ~P~llN~~~~~  127 (130)
                      +|++||++|.+
T Consensus        82 ~P~liN~dpy~   92 (125)
T 3klr_A           82 NPGLVNKSCYE   92 (125)
T ss_dssp             CTTHHHHCTTT
T ss_pred             ChHhhcCCCCC
Confidence            99999999974

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=100.00  E-value=2.7e-34  Score=210.06  Aligned_cols=96  Identities=81%  Similarity=1.155  Sum_probs=92.9

Q ss_pred             cccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928           32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN  111 (130)
Q Consensus        32 ~~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN  111 (130)
                      +++|++++|+++|+|++.+|+.++||||+|+|+++|+|++|++|++|++|++||+|++|||+|++.+|+||++|+|+++|
T Consensus         1 ~~~p~~l~Yt~~HeWv~~e~~~~~vGitd~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn   80 (131)
T 1hpc_A            1 SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN   80 (131)
T ss_dssp             CCCCTTCEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEEC
T ss_pred             CCCccccEECCCCEEEEEcCCEEEEEEehhhcccCCCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEh
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCcccccCCCCc
Q 032928          112 TKLTETPGLVIFSVNS  127 (130)
Q Consensus       112 ~~l~~~P~llN~~~~~  127 (130)
                      .++.++|++||++|.+
T Consensus        81 ~~l~~~P~lvn~dpy~   96 (131)
T 1hpc_A           81 TGLTGKPGLINSSPYE   96 (131)
T ss_dssp             THHHHCTTHHHHCTTT
T ss_pred             hhhhcChhhhccCCCC
Confidence            9999999999999953

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=100.00  E-value=3.4e-34  Score=208.76  Aligned_cols=95  Identities=47%  Similarity=0.742  Sum_probs=92.4

Q ss_pred             ccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928           33 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT  112 (130)
Q Consensus        33 ~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~  112 (130)
                      ++|++++|+++|+|++.+++.++||||+|+|+++|+|+||++|++|++|++||+|++|||+|++++|+||++|+|+++|.
T Consensus         2 ~~p~~l~yt~~heWv~~~~~~~~vGit~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~   81 (128)
T 1onl_A            2 DIPKDRFYTKTHEWALPEGDTVLVGITDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNL   81 (128)
T ss_dssp             CCCSSSEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECT
T ss_pred             CCCcccEECCCcEEEEecCCEEEEEeehHHhhcCCCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhh
Confidence            47999999999999999989999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCcccccCCCCc
Q 032928          113 KLTETPGLVIFSVNS  127 (130)
Q Consensus       113 ~l~~~P~llN~~~~~  127 (130)
                      ++.++|++||++|.+
T Consensus        82 ~l~~~P~lvn~dpy~   96 (128)
T 1onl_A           82 ALEKTPELVNQDPYG   96 (128)
T ss_dssp             HHHHCTTHHHHCTTT
T ss_pred             hhccChhhhccCCCC
Confidence            999999999999964

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=100.00  E-value=6.9e-34  Score=207.11  Aligned_cols=95  Identities=48%  Similarity=0.808  Sum_probs=91.8

Q ss_pred             ccCCcceeeCceeEEEEeCC-EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928           33 SVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN  111 (130)
Q Consensus        33 ~~p~~~~ys~~H~Wv~~e~~-~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN  111 (130)
                      ++|++++|+++|+||+.+++ .++||||+|+|+++|+|+||++|++|++|++||+|++|||+|++++|+||++|+|+++|
T Consensus         2 ~~p~~l~yt~~heWv~~~~~g~~~vGitd~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN   81 (128)
T 3a7l_A            2 NVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVN   81 (128)
T ss_dssp             CCCTTCEECTTSEEEEECTTSCEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred             CCcccceEcCCcEEEEECCCcEEEEEEehHHhccCCceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEh
Confidence            47999999999999999866 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCcccccCCCCc
Q 032928          112 TKLTETPGLVIFSVNS  127 (130)
Q Consensus       112 ~~l~~~P~llN~~~~~  127 (130)
                      .+|.++|++||++|.+
T Consensus        82 ~~l~~~P~lvn~dpy~   97 (128)
T 3a7l_A           82 DALSDSPELVNSEPYA   97 (128)
T ss_dssp             GGGGTCTTHHHHCTTT
T ss_pred             hhhccChHHhccCCCC
Confidence            9999999999999964

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=99.97  E-value=3e-31  Score=195.08  Aligned_cols=93  Identities=51%  Similarity=0.808  Sum_probs=89.8

Q ss_pred             CCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928           35 LDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL  114 (130)
Q Consensus        35 p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l  114 (130)
                      .++++|+++|+|++.+++.++||||+|+|+++|+|++|++|++|++|++||+|++|||+|++.+|+||++|+|+++|.++
T Consensus        13 ~~~~~yt~~HeWv~~e~~~~~vGit~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l   92 (136)
T 1zko_A           13 LKMKKYTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKL   92 (136)
T ss_dssp             CEEEEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGG
T ss_pred             cccceeCCCCEEEEecCCEEEEeeEhhhcccCCCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhh
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccccCCCCc
Q 032928          115 TETPGLVIFSVNS  127 (130)
Q Consensus       115 ~~~P~llN~~~~~  127 (130)
                      .++|++||++|.+
T Consensus        93 ~~~p~~Vn~dp~g  105 (136)
T 1zko_A           93 DTEPELINKDPEG  105 (136)
T ss_dssp             GTCTTHHHHCTTT
T ss_pred             ccCccCcccCCCC
Confidence            9999999999864

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=98.72  E-value=2.6e-09  Score=69.87  Aligned_cols=59  Identities=25%  Similarity=0.367  Sum_probs=51.3

Q ss_pred             eeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccC
Q 032928           58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET  117 (130)
Q Consensus        58 iTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~  117 (130)
                      +.+.+....|.|..+.+ ++|+.|++||+++.||++|+..+++||++|+|.++|.+..+.
T Consensus         7 ~p~~g~~~~G~i~~~~v-~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~   65 (81)
T 1gjx_A            7 VPDIGGHENVDIIAVEV-NVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK   65 (81)
T ss_dssp             CCCCSSCSSEEEEEECC-CSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE
T ss_pred             cCCCCCCCcEEEEEEEc-CCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE
Confidence            44555567789999877 899999999999999999999999999999999999877543

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=98.72  E-value=2.2e-08  Score=66.52  Aligned_cols=53  Identities=19%  Similarity=0.290  Sum_probs=47.5

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ...+.-|.|..+.+ ++|+.|++||+++.||++|+..+++||++|+|.+++ ...
T Consensus         8 v~a~~~G~v~~~~v-~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G   60 (84)
T 2kcc_A            8 LRSPSAGKLTQYTV-EDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPG   60 (84)
T ss_dssp             ECCSSSCCEEEESS-CTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTT
T ss_pred             EECCCCEEEEEEEC-CCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCC
Confidence            45677899998865 899999999999999999999999999999999998 654

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=98.65  E-value=2.7e-08  Score=64.78  Aligned_cols=54  Identities=20%  Similarity=0.285  Sum_probs=45.8

Q ss_pred             chhccCCeeEEE------cCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           62 AQDHLGEVVFVE------LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        62 a~~~lG~I~~v~------lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ..+..|.|..+.      +.++|+.|++||.++.||++|+..+++||++|+|.++|.+..
T Consensus         8 ~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G   67 (80)
T 1bdo_A            8 RSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG   67 (80)
T ss_dssp             ECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTT
T ss_pred             EcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCC
Confidence            456677776552      568999999999999999999999999999999999986543

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=98.63  E-value=4.7e-08  Score=65.07  Aligned_cols=60  Identities=17%  Similarity=0.168  Sum_probs=47.6

Q ss_pred             EEeeecchh-ccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           56 VGITDHAQD-HLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        56 vGiTd~a~~-~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      +.+-+.+.. .-|.|..+. .++|+.|++||+++.||++|+..++.||.+|+|.+++.+..+
T Consensus         8 i~~P~lg~~~~~G~v~~~~-v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~   68 (87)
T 3crk_C            8 VLLPALSPTMTMGTVQRWE-KKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGT   68 (87)
T ss_dssp             EECCCSSTTCCEEEEEEEC-SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTC
T ss_pred             EeCCCCCCCCCcEEEEEEE-cCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCC
Confidence            444444443 236677664 489999999999999999999999999999999999866543

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=98.61  E-value=3e-08  Score=64.56  Aligned_cols=49  Identities=20%  Similarity=0.175  Sum_probs=43.3

Q ss_pred             cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      -|.|..+.+ ++|+.|++||+++.+|++|+..++.||++|+|.+++.+..
T Consensus        15 ~G~i~~~~v-~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G   63 (79)
T 1ghj_A           15 DGTVATWHK-KPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG   63 (79)
T ss_dssp             CEEECCCSS-CTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTT
T ss_pred             CEEEEEEEc-CCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCc
Confidence            466776655 8899999999999999999999999999999999987654

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=98.61  E-value=4.7e-08  Score=63.53  Aligned_cols=56  Identities=29%  Similarity=0.338  Sum_probs=46.6

Q ss_pred             eeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        58 iTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      +.+.+.. -|.|..+.+ ++|+.|++||+++.||++|...+++||++|+|.+++.+..
T Consensus         7 ~p~~g~~-~G~v~~~~v-~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G   62 (80)
T 1qjo_A            7 VPDIGGD-EVEVTEVMV-KVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVG   62 (80)
T ss_dssp             CCCCSSS-CEEEEECCC-CTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTT
T ss_pred             CCCCCCC-CEEEEEEEc-CCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCC
Confidence            3344444 677777644 8999999999999999999999999999999999986654

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=98.59  E-value=1e-07  Score=60.45  Aligned_cols=52  Identities=25%  Similarity=0.326  Sum_probs=44.9

Q ss_pred             hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ...-|.|..+.+ ++|+.|++||+++.||++|...+++||++|+|.+++.+..
T Consensus         4 a~~~G~v~~~~v-~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G   55 (72)
T 1z6h_A            4 IQMAGNLWKVHV-KAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEG   55 (72)
T ss_dssp             CCSSEEEEEECC-CTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTT
T ss_pred             CcccEEEEEEEc-CCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCC
Confidence            345677877754 7899999999999999999999999999999999986554

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=98.58  E-value=4e-08  Score=66.63  Aligned_cols=60  Identities=20%  Similarity=0.147  Sum_probs=48.0

Q ss_pred             EEEeeecchh-ccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           55 TVGITDHAQD-HLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        55 ~vGiTd~a~~-~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      .|.+.+.+.. .-|.|..+. .++|+.|++||+++.||++|+..+|.||++|+|.+++.+..
T Consensus         6 ~i~~P~lg~~~~~G~v~~~~-v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G   66 (93)
T 1k8m_A            6 QFKLSDIGEGIREVTVKEWY-VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLD   66 (93)
T ss_dssp             EEECCSSCTTSCCEEEEEEC-CCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSS
T ss_pred             EEEcCCCCCCCCCEEEEEEE-cCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCC
Confidence            3444454443 346677664 48999999999999999999999999999999999987654

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=98.54  E-value=1.8e-07  Score=59.35  Aligned_cols=53  Identities=28%  Similarity=0.392  Sum_probs=45.3

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL  114 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l  114 (130)
                      ...+.-|.|..+.+ ++|+.|++||+++.+|++|...+++||++|.|.+++...
T Consensus         8 v~a~~~G~v~~~~v-~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~   60 (74)
T 2d5d_A            8 VSAPMPGKVLRVLV-RVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKE   60 (74)
T ss_dssp             EECSSCEEEEEECC-CTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCT
T ss_pred             EecCCCEEEEEEEc-CCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCC
Confidence            34566677777654 799999999999999999999999999999999987544

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=98.54  E-value=3.6e-08  Score=63.76  Aligned_cols=49  Identities=22%  Similarity=0.363  Sum_probs=43.5

Q ss_pred             cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      -|.|..+.+ ++|+.|++||+++.||++|...+++||++|+|.++|.+..
T Consensus        15 ~G~v~~~~v-~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G   63 (77)
T 2l5t_A           15 EGEIVRWDV-KEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREG   63 (77)
T ss_dssp             CEEEEECSC-CTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTT
T ss_pred             cEEEEEEEe-CCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCc
Confidence            466777644 8999999999999999999999999999999999987664

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=98.52  E-value=2.8e-07  Score=59.19  Aligned_cols=52  Identities=29%  Similarity=0.409  Sum_probs=45.3

Q ss_pred             chhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928           62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL  114 (130)
Q Consensus        62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l  114 (130)
                      ..+.-|.|..+.+ ++|+.|++||+++.||++|...+++||++|+|.++|...
T Consensus        12 ~a~~~G~v~~~~v-~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~   63 (77)
T 1dcz_A           12 PAPLAGTVSKILV-KEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKE   63 (77)
T ss_dssp             EBSSSCEEEEECC-CTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCT
T ss_pred             ECCCCEEEEEEEc-CCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCC
Confidence            3556788887755 799999999999999999999999999999999988544

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=98.50  E-value=1.6e-07  Score=60.99  Aligned_cols=47  Identities=38%  Similarity=0.487  Sum_probs=41.1

Q ss_pred             CeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           68 EVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        68 ~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      .|..+.+ ++|+.|++||.++.||++|+..+++||++|+|.+++.+..
T Consensus        14 ~i~~~~v-~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G   60 (79)
T 1iyu_A           14 EVIELLV-KTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLG   60 (79)
T ss_dssp             EEEEECC-CTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTT
T ss_pred             EEEEEec-CCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCC
Confidence            4555544 8999999999999999999999999999999999986654

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=1.8e-07  Score=64.06  Aligned_cols=49  Identities=18%  Similarity=0.235  Sum_probs=43.0

Q ss_pred             cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      -|.|..+.. ++|+.|++||+++.||++|+..+|.||.+|+|.+++.+..
T Consensus        21 ~G~i~~~~v-~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G   69 (98)
T 2dnc_A           21 EGNIVKWLK-KEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG   69 (98)
T ss_dssp             EECEEEESS-CTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTT
T ss_pred             cEEEEEEEc-CCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCC
Confidence            467777644 8999999999999999999999999999999999876554

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=98.42  E-value=1.7e-08  Score=66.90  Aligned_cols=53  Identities=26%  Similarity=0.335  Sum_probs=46.6

Q ss_pred             hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      ...+|.|..+.+ ++|+.|++||.++.||++|+..+|+||++|+|.++|.+..+
T Consensus         7 ~p~~G~v~~~~v-~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~   59 (85)
T 2k7v_A            7 VPDIVEVTEVMV-KVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD   59 (85)
T ss_dssp             CCSCCCCCSCCC-SSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTC
T ss_pred             CCCeEEEEEEEc-CCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCC
Confidence            445588888755 89999999999999999999999999999999999877653

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=98.42  E-value=2.1e-07  Score=64.89  Aligned_cols=50  Identities=20%  Similarity=0.168  Sum_probs=42.6

Q ss_pred             cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      -|.|..+. .++|+.|++||+++.||++|+..+|.||.+|+|.+++.+..+
T Consensus        21 ~G~v~~~~-v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~   70 (108)
T 2dne_A           21 AGTIARWE-KKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGT   70 (108)
T ss_dssp             EEEEEECS-SCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTC
T ss_pred             cEEEEEEE-cCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCC
Confidence            35566653 489999999999999999999999999999999998765543

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=98.41  E-value=3.2e-07  Score=66.18  Aligned_cols=49  Identities=20%  Similarity=0.210  Sum_probs=43.0

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      |.|..+. .++|+.|++||+++.||++|+..+|.||.+|+|.+++.+..+
T Consensus        42 G~V~~~~-V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd   90 (128)
T 1y8o_B           42 GTVQRWE-KKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGT   90 (128)
T ss_dssp             EEEEEEC-SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTC
T ss_pred             EEEEEEe-cCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCC
Confidence            5677664 489999999999999999999999999999999998866653

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=98.39  E-value=6.8e-07  Score=78.97  Aligned_cols=53  Identities=23%  Similarity=0.314  Sum_probs=46.9

Q ss_pred             chhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ..++.|.|+.+. .++|++|++||++++||+||+..+|.||.+|+|.+++.+..
T Consensus       616 ~ap~~G~v~~~~-v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G  668 (681)
T 3n6r_A          616 LCPMPGLIVKVD-VEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAG  668 (681)
T ss_dssp             ECCSCEEEEEEC-CCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTT
T ss_pred             ECCCcEEEEEEE-eCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCc
Confidence            456788888774 49999999999999999999999999999999999986654

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=5.7e-07  Score=61.27  Aligned_cols=52  Identities=19%  Similarity=0.270  Sum_probs=44.7

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL  114 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l  114 (130)
                      ...+.-|.|..+.+ ++|+.|++||+++.||++|+..+++||++|+|. ++.+.
T Consensus        20 v~a~~~G~v~~~~v-~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~   71 (100)
T 2dn8_A           20 LRSPSAGKLTQYTV-EDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRP   71 (100)
T ss_dssp             EECSSCEEEEEESS-CTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCT
T ss_pred             EeCCCCEEEEEEEc-CCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCC
Confidence            34567788887744 899999999999999999999999999999999 76543

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=98.36  E-value=1.2e-07  Score=64.21  Aligned_cols=54  Identities=24%  Similarity=0.336  Sum_probs=26.2

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ...+.-|.|..+.+ ++|+.|++||.++.||++|+..+++||++|+|.+++.+..
T Consensus        28 v~a~~~G~v~~~~v-~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G   81 (94)
T 2jku_A           28 LRSPMPGVVVAVSV-KPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAG   81 (94)
T ss_dssp             CCCSSSCEEEEECC-CTTCCCCTTCCCEEEEC-----------------------
T ss_pred             EECCCCEEEEEEEC-CCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCc
Confidence            34456788888755 7999999999999999999999999999999999886554

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=98.33  E-value=6.9e-07  Score=60.84  Aligned_cols=52  Identities=25%  Similarity=0.309  Sum_probs=44.9

Q ss_pred             hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ...-|.|..+.+ ++|+.|++||+|+.||++|...+|+||++|.|.+++....
T Consensus        19 a~~~G~v~~~~v-~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G   70 (99)
T 2ejm_A           19 APMTGTIEKVFV-KAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREG   70 (99)
T ss_dssp             CSSSEEEEEECC-CTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTT
T ss_pred             cCCCEEEEEEEC-CCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCC
Confidence            455677777755 7999999999999999999999999999999999886543

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=98.28  E-value=2.6e-08  Score=65.16  Aligned_cols=49  Identities=16%  Similarity=0.079  Sum_probs=42.1

Q ss_pred             cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      -|.|..+. .++|+.|++||+++.||++|+..+++||++|+|.+++.+..
T Consensus        16 ~G~v~~~~-v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G   64 (80)
T 1pmr_A           16 DATVATWH-KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG   64 (80)
T ss_dssp             CEECCBCC-CCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTT
T ss_pred             cEEEEEEE-CCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCc
Confidence            35566553 48899999999999999999999999999999999886654

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=98.10  E-value=2.7e-06  Score=79.75  Aligned_cols=54  Identities=22%  Similarity=0.249  Sum_probs=48.1

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ...++.|.|+.+. .++||+|++||+++.||++|+..+|.||++|+|.+++.+..
T Consensus      1170 v~ap~~G~v~~~~-v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G 1223 (1236)
T 3va7_A         1170 LYSEYTGRFWKPV-AAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNG 1223 (1236)
T ss_dssp             EECSSCEEEEEES-SCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTT
T ss_pred             EeCCCcEEEEEEE-cCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCc
Confidence            3467889999874 59999999999999999999999999999999999987654

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=98.09  E-value=6.2e-06  Score=76.79  Aligned_cols=53  Identities=21%  Similarity=0.343  Sum_probs=46.5

Q ss_pred             hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      .++.|.|+.+. .++|++|++||++++||++|+..+|.||++|+|.+++.+..+
T Consensus      1082 ap~~G~v~~~~-v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~ 1134 (1150)
T 3hbl_A         1082 AQMPGSVTEVK-VSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD 1134 (1150)
T ss_dssp             CSSSEEEEEEC-CCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTC
T ss_pred             cCceEEEEEEE-eCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCC
Confidence            45678888774 499999999999999999999999999999999999876553

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=97.79  E-value=2.9e-06  Score=71.53  Aligned_cols=49  Identities=27%  Similarity=0.359  Sum_probs=0.0

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      |+|+.+. .++||.|++||+++.||++|+..+|.||.+|+|.++..+..+
T Consensus        17 g~i~~w~-v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~   65 (428)
T 3dva_I           17 GEIVKWF-VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT   65 (428)
T ss_dssp             --------------------------------------------------
T ss_pred             EEEEEEE-cCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCC
Confidence            5566553 499999999999999999999999999999999988766443

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=97.73  E-value=2.9e-05  Score=53.39  Aligned_cols=52  Identities=19%  Similarity=0.373  Sum_probs=42.7

Q ss_pred             hhccCCeeEEEcCCCCceEecCCeEEEEEEccee-----------------------------eeeecCcceEEEEeccc
Q 032928           63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKAT-----------------------------SDVNSPISGEVIEVNTK  113 (130)
Q Consensus        63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~-----------------------------~~l~SPvsG~Vv~vN~~  113 (130)
                      ...-|.|..+.+ ++|+.|++||+|+.|++.++-                             ..|+||++|.|.+++..
T Consensus         6 a~~~G~V~~v~v-~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~   84 (116)
T 2k32_A            6 PQVSGVIVNKLF-KAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVN   84 (116)
T ss_dssp             CSSCEEEEEECS-CTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCC
T ss_pred             CcCCEEEEEEEC-CCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECC
Confidence            455688887754 799999999999999987554                             48999999999998765


Q ss_pred             cc
Q 032928          114 LT  115 (130)
Q Consensus       114 l~  115 (130)
                      ..
T Consensus        85 ~G   86 (116)
T 2k32_A           85 IG   86 (116)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=97.59  E-value=1.6e-05  Score=71.02  Aligned_cols=52  Identities=27%  Similarity=0.415  Sum_probs=44.6

Q ss_pred             hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      .++-|.|..+.+ ++|++|++||++++||++|+..+|.||.+|+|.+++.+..
T Consensus       654 ap~~G~V~~v~V-~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G  705 (718)
T 3bg3_A          654 APMPGKVIDIKV-VAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKD  705 (718)
T ss_dssp             CSSCEEEEEECS-CTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSE
T ss_pred             CCCCeEEEEEEe-CCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCC
Confidence            345677777754 8999999999999999999999999999999998876544

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=97.54  E-value=3.2e-05  Score=72.07  Aligned_cols=70  Identities=20%  Similarity=0.305  Sum_probs=48.7

Q ss_pred             eEEEEeCCEEEEEeeecc---------------------hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCc
Q 032928           45 EWVKHEGSVATVGITDHA---------------------QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPI  103 (130)
Q Consensus        45 ~Wv~~e~~~~~vGiTd~a---------------------~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPv  103 (130)
                      ..+..+|..+.|.+.+-.                     .++-|.|..+.+ ++|+.|++||++++||++|+..+|.||.
T Consensus      1061 ~~~evnG~~~~v~v~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~v-~~Gd~V~~G~~l~~iEamKme~~i~Ap~ 1139 (1165)
T 2qf7_A         1061 VFFELNGQPRRIKVPDRAHGATGAAVRRKAEPGNAAHVGAPMPGVISRVFV-SSGQAVNAGDVLVSIEAMKMETAIHAEK 1139 (1165)
T ss_dssp             EEEEETTEEEEEEEECGGGTCCSCCCSCBCCTTCTTEEECSSCEEEEEECC-SSCCCC---CEEEEEEC---CEEEECCS
T ss_pred             EEEEECCEEEEEEecCcccccccccccccCCCCCCceeeCCCCeEEEEEEc-CCcCEeCCCCEEEEEEcccceEEEEcCC
Confidence            456666667777765532                     233455666644 8899999999999999999999999999


Q ss_pred             ceEEEEeccccc
Q 032928          104 SGEVIEVNTKLT  115 (130)
Q Consensus       104 sG~Vv~vN~~l~  115 (130)
                      +|+|.+++.+..
T Consensus      1140 ~G~V~~i~v~~G 1151 (1165)
T 2qf7_A         1140 DGTIAEVLVKAG 1151 (1165)
T ss_dssp             SCCCCEECCCSS
T ss_pred             CEEEEEEEeCCC
Confidence            999999987654

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=96.84  E-value=0.002  Score=48.47  Aligned_cols=49  Identities=35%  Similarity=0.391  Sum_probs=41.5

Q ss_pred             hccCCeeEEEcCCCCceEecCCeEEEEEEcce-eeeeecCcceEEEEeccc
Q 032928           64 DHLGEVVFVELPETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVNTK  113 (130)
Q Consensus        64 ~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~-~~~l~SPvsG~Vv~vN~~  113 (130)
                      +.-|-.+++ ...+|++|.+||.++.|.+.|. +.-++||++|+|+.+|+.
T Consensus       106 paeG~~V~~-i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~  155 (169)
T 3d4r_A          106 PAEGYKVYP-IMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI  155 (169)
T ss_dssp             EECSSEEEE-CCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred             EeCceEEEE-EcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence            444666655 4589999999999999999996 777999999999999876

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=96.18  E-value=0.008  Score=49.53  Aligned_cols=56  Identities=14%  Similarity=0.122  Sum_probs=44.4

Q ss_pred             ecchhccCCeeEEEcCCCCceEecCCeEEEEEEc----------------------------------------------
Q 032928           60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV----------------------------------------------   93 (130)
Q Consensus        60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~----------------------------------------------   93 (130)
                      ......-|.|..+.+.++|+.|++||+|+.|++.                                              
T Consensus       123 ~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~  202 (413)
T 3ne5_B          123 IVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQ  202 (413)
T ss_dssp             EECCSSCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred             EEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            3444567888888755899999999999999952                                              


Q ss_pred             --ceeeeeecCcceEEEEeccccc
Q 032928           94 --KATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        94 --K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                        ..-..|+||++|.|.++|....
T Consensus       203 ~~~~~~~I~AP~~G~V~~~~v~~G  226 (413)
T 3ne5_B          203 KIQTRFTLKAPIDGVITAFDLRAG  226 (413)
T ss_dssp             SCCCEEEEECSSSEEEEECCCCTT
T ss_pred             cccccEEEEcCCCeEEEEEEcCCC
Confidence              1245799999999999986654

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=96.07  E-value=0.012  Score=47.49  Aligned_cols=40  Identities=23%  Similarity=0.229  Sum_probs=35.3

Q ss_pred             cCCCCceEecCCeEEEEEEc----ceeeeeecCcceEEEEeccc
Q 032928           74 LPETGASVKQGGGFGVVESV----KATSDVNSPISGEVIEVNTK  113 (130)
Q Consensus        74 lp~vG~~v~~Gd~l~~IEs~----K~~~~l~SPvsG~Vv~vN~~  113 (130)
                      ..+.|+.|++||.++.|+..    +...+++||.+|.|+..+..
T Consensus       271 ~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~~  314 (331)
T 3na6_A          271 MIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHFP  314 (331)
T ss_dssp             SSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEECS
T ss_pred             cCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeCC
Confidence            45899999999999999983    56899999999999998763

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=96.00  E-value=0.0057  Score=48.26  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=26.8

Q ss_pred             ecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928           60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV   93 (130)
Q Consensus        60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~   93 (130)
                      ......-|.|..+.+ ++|+.|++||+|+.|++.
T Consensus        33 ~v~~~~~G~V~~v~v-~~G~~V~kG~~L~~ld~~   65 (341)
T 3fpp_A           33 DVGAQVSGQLKTLSV-AIGDKVKKDQLLGVIDPE   65 (341)
T ss_dssp             ECCCSSCEEEEEECC-CTTCEECTTCEEEEECCH
T ss_pred             EEeccCCcEEEEEEe-CCCCEECCCCEEEEEChH
Confidence            334456788888865 799999999999999875

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=95.92  E-value=0.0093  Score=47.37  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=27.2

Q ss_pred             ecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928           60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK   94 (130)
Q Consensus        60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K   94 (130)
                      ......-|.|..+.+ ++|+.|++||+|+.|++..
T Consensus        59 ~v~~~~~G~V~~v~v-~~G~~V~kGq~L~~ld~~~   92 (359)
T 3lnn_A           59 KVLPPLAGRIVSLNK-QLGDEVKAGDVLFTIDSAD   92 (359)
T ss_dssp             EECCSSCEEEEECCS-CTTCEECTTCEEEEEECSS
T ss_pred             EEeccCCEEEEEEEc-CCCCEEcCCCEEEEEChHH
Confidence            344556788888755 8999999999999999753

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=95.91  E-value=0.0034  Score=48.25  Aligned_cols=32  Identities=9%  Similarity=0.213  Sum_probs=26.5

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESV   93 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~   93 (130)
                      .....-|.|..+.+ ++|+.|++||+|+.|++.
T Consensus        25 v~a~~~G~V~~v~v-~~G~~V~kGq~L~~ld~~   56 (277)
T 2f1m_A           25 VRPQVSGIILKRNF-KEGSDIEAGVSLYQIDPA   56 (277)
T ss_dssp             ECCSSCEEEEEECS-CTTCEECTTSCSEEECCH
T ss_pred             EEccccEEEEEEEc-CCCCEecCCCEEEEECcH
Confidence            34556788988865 899999999999999874

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=95.71  E-value=0.018  Score=47.28  Aligned_cols=42  Identities=14%  Similarity=0.071  Sum_probs=37.0

Q ss_pred             cCCCCceEecCCeEEEEEE------cceeeeeecCcceEEEEeccccc
Q 032928           74 LPETGASVKQGGGFGVVES------VKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        74 lp~vG~~v~~Gd~l~~IEs------~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ..+.|+.|++||.++.|..      .....+++||.+|.|...+..-.
T Consensus       304 ~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~p~  351 (368)
T 3fmc_A          304 LGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFASAS  351 (368)
T ss_dssp             CSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSSSE
T ss_pred             eCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCCCc
Confidence            4589999999999999998      56789999999999999986644

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=95.60  E-value=0.024  Score=46.01  Aligned_cols=38  Identities=18%  Similarity=0.068  Sum_probs=34.6

Q ss_pred             CCCCceEecCCeEEEEEE----cceeeeeecCcceEEEEecc
Q 032928           75 PETGASVKQGGGFGVVES----VKATSDVNSPISGEVIEVNT  112 (130)
Q Consensus        75 p~vG~~v~~Gd~l~~IEs----~K~~~~l~SPvsG~Vv~vN~  112 (130)
                      .+.|+.|++||+|+.|++    ++...++.||.+|.|...+.
T Consensus       282 ~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~~  323 (354)
T 3cdx_A          282 HYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAG  323 (354)
T ss_dssp             CCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEEC
T ss_pred             CCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEeC
Confidence            468999999999999998    57889999999999999875

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=95.12  E-value=0.0089  Score=48.24  Aligned_cols=31  Identities=16%  Similarity=0.227  Sum_probs=25.3

Q ss_pred             chhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928           62 AQDHLGEVVFVELPETGASVKQGGGFGVVESV   93 (130)
Q Consensus        62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~   93 (130)
                      ....-|.|..+.+ ++|+.|++||+|+.|++.
T Consensus        47 ~a~v~G~V~~v~v-~~Gd~V~kGq~L~~ld~~   77 (369)
T 1vf7_A           47 RPQVNGIILKRLF-KEGSDVKAGQQLYQIDPA   77 (369)
T ss_dssp             CCSSCEEEEECCS-CSSEEECTTSEEEEECCH
T ss_pred             EeeCceEEEEEEc-CCCCEEcCCCEEEEECcH
Confidence            3456788887754 899999999999999864

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=94.37  E-value=0.006  Score=48.56  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=26.4

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESV   93 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~   93 (130)
                      ...+.-|.|..+.+ ++|+.|++||+|+.|++.
T Consensus        35 v~~~~~G~V~~v~v-~~G~~V~~Gq~L~~ld~~   66 (369)
T 4dk0_A           35 VGAQVSGKITKLYV-KLGQQVKKGDLLAEIDST   66 (369)
T ss_dssp             BCCCSCSBCCEECC-CTTSCCCSSCCCEECCCH
T ss_pred             EecCCCcEEEEEEE-CCCCEECCCCEEEEEcCH
Confidence            33456688988865 799999999999999875

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=93.97  E-value=0.11  Score=41.61  Aligned_cols=40  Identities=20%  Similarity=0.267  Sum_probs=35.0

Q ss_pred             EcCCCCceEecCCeEEEEEE----cceeeeeecCcceEEEEecc
Q 032928           73 ELPETGASVKQGGGFGVVES----VKATSDVNSPISGEVIEVNT  112 (130)
Q Consensus        73 ~lp~vG~~v~~Gd~l~~IEs----~K~~~~l~SPvsG~Vv~vN~  112 (130)
                      ...+.|+.|++||.|+.+..    ++...+++||.+|.|...+.
T Consensus       270 ~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~~  313 (332)
T 2qj8_A          270 PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIRS  313 (332)
T ss_dssp             ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEEC
T ss_pred             EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEeC
Confidence            44578999999999999976    56788999999999999885

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=89.30  E-value=0.37  Score=36.22  Aligned_cols=42  Identities=24%  Similarity=0.169  Sum_probs=35.0

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK  113 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~  113 (130)
                      |.+.+|   +.|+.|++|+.|+  |.+....+|.|.++|+|.-.|-.
T Consensus        61 Ga~L~V---~dG~~V~~G~~la--ewDp~t~pIisE~~G~V~f~dii  102 (190)
T 2auk_A           61 GAVLAK---GDGEQVAGGETVA--NWDPHTMPVITEVSGFVRFTDMI  102 (190)
T ss_dssp             TCEESS---CTTCEECTTCEEE--ECCSSEEEEECSSCEEEEEESCC
T ss_pred             CCEEEe---cCCCEEcCCCEEE--EEcCcCCcEEeccccEEEEEecc
Confidence            444444   8999999999998  56899999999999999987743

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=80.64  E-value=1  Score=33.18  Aligned_cols=46  Identities=20%  Similarity=0.330  Sum_probs=34.2

Q ss_pred             cchhccCCeeEEEcCCCCceEec----CCeEEEEEEcceeeeeecCcceEEEEec
Q 032928           61 HAQDHLGEVVFVELPETGASVKQ----GGGFGVVESVKATSDVNSPISGEVIEVN  111 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~----Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN  111 (130)
                      ...+.-|+|..++  ++.|.+-.    |+-++...+.   ..++||++|+|..+-
T Consensus        15 i~aP~~G~vv~l~--~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~   64 (161)
T 1f3z_A           15 IIAPLSGEIVNIE--DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIF   64 (161)
T ss_dssp             EECSSCEEEEEGG--GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEEC
T ss_pred             EEecCCeEEEEeE--ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEc
Confidence            4456678777543  66777666    7778777765   588999999999984

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=80.29  E-value=0.73  Score=33.65  Aligned_cols=46  Identities=22%  Similarity=0.416  Sum_probs=32.7

Q ss_pred             cchhccCCeeEEEcCCCCceEec----CCeEEEEEEcceeeeeecCcceEEEEec
Q 032928           61 HAQDHLGEVVFVELPETGASVKQ----GGGFGVVESVKATSDVNSPISGEVIEVN  111 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~----Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN  111 (130)
                      ...+.-|+|..+  -++.|.+-+    |+-++...+.   ..++||++|+|..+-
T Consensus        10 i~aP~~G~vv~l--~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~   59 (154)
T 2gpr_A           10 VLAPCDGTIITL--DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAF   59 (154)
T ss_dssp             EECSSSEEEECG--GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECC
T ss_pred             EEecCCeEEEEe--eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEc
Confidence            335566777644  466666666    7777777664   589999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d1onla_	127	b.84.1.1 (A:) Protein H of glycine cleavage system	1e-32
d1hpca_	131	b.84.1.1 (A:) Protein H of glycine cleavage system	7e-32

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]} Length = 127

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

 Score =  109 bits (273), Expect = 1e-32
 Identities = 45/88 (51%), Positives = 59/88 (67%)

Query: 34  VLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93
           +     Y  +HEW   EG    VGITD+AQD LG+VV+VELPE G  V++G    VVESV
Sbjct: 2   IPKDRFYTKTHEWALPEGDTVLVGITDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESV 61

Query: 94  KATSDVNSPISGEVIEVNTKLTETPGLV 121
           K  SD+ +P++GE++EVN  L +TP LV
Sbjct: 62  KTASDIYAPVAGEIVEVNLALEKTPELV 89

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]} Length = 131

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

 Score =  107 bits (269), Expect = 7e-32
 Identities = 77/90 (85%), Positives = 81/90 (90%)

Query: 32  SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91
           S+VLDGLKYA SHEWVKHEGSVAT+GITDHAQDHLGEVVFVELPE G SV +G GFG VE
Sbjct: 1   SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVE 60

Query: 92  SVKATSDVNSPISGEVIEVNTKLTETPGLV 121
           SVKATSDVNSPISGEVIEVNT LT  PGL+
Sbjct: 61  SVKATSDVNSPISGEVIEVNTGLTGKPGLI 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	100.0
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	100.0
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	98.92
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	98.71
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	98.69
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	98.67
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	98.66
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	98.66
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	98.6
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	98.59
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	98.5
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	98.29
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	84.15
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	80.8
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	80.16

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=3.4e-35  Score=213.02  Aligned_cols=96  Identities=81%  Similarity=1.155  Sum_probs=93.8

Q ss_pred             cccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928           32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN  111 (130)
Q Consensus        32 ~~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN  111 (130)
                      +++|++++|+++|+|++.+++.++||||+|||+++|+|+||+||++|++|++|++|++|||.|++.+++||++|+|+++|
T Consensus         1 ~~v~~~~~Yt~~H~Wv~~e~~~~~vGit~~a~~~lG~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN   80 (131)
T d1hpca_           1 SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN   80 (131)
T ss_dssp             CCCCTTCEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEEC
T ss_pred             CCCcCcceeCCCeEEEEecCCEEEEEECHHHHhhhhhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheeeh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCcccccCCCCc
Q 032928          112 TKLTETPGLVIFSVNS  127 (130)
Q Consensus       112 ~~l~~~P~llN~~~~~  127 (130)
                      .++.++|++||++|.+
T Consensus        81 ~~l~~~P~llN~dpy~   96 (131)
T d1hpca_          81 TGLTGKPGLINSSPYE   96 (131)
T ss_dssp             THHHHCTTHHHHCTTT
T ss_pred             hhhhhCHHHHhCCCCC
Confidence            9999999999999964

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6e-35  Score=210.67  Aligned_cols=95  Identities=47%  Similarity=0.742  Sum_probs=92.7

Q ss_pred             ccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928           33 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT  112 (130)
Q Consensus        33 ~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~  112 (130)
                      ++|++++|+++|+|++.+++.++||||+|+|+++|+|+||+||++|+++++|++|++|||.|++.+|+||++|+|+++|.
T Consensus         1 ~iP~d~~Ys~~H~Wv~~~~~~~~iGit~~a~~~lG~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~   80 (127)
T d1onla_           1 DIPKDRFYTKTHEWALPEGDTVLVGITDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNL   80 (127)
T ss_dssp             CCCSSSEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECT
T ss_pred             CCCCcceeCCCcEEEEecCCEEEEEeCHHHHhhccccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCcccccCCCCc
Q 032928          113 KLTETPGLVIFSVNS  127 (130)
Q Consensus       113 ~l~~~P~llN~~~~~  127 (130)
                      ++.++|++||++|.+
T Consensus        81 ~l~~~P~lin~dpy~   95 (127)
T d1onla_          81 ALEKTPELVNQDPYG   95 (127)
T ss_dssp             HHHHCTTHHHHCTTT
T ss_pred             hhhhCHHHhcCCCCC
Confidence            999999999999963

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=98.92  E-value=1.1e-09  Score=70.96  Aligned_cols=55  Identities=27%  Similarity=0.389  Sum_probs=48.1

Q ss_pred             ecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      ....++.|.|..+.+ ++|++|++||+++.+|++|+..+|+||++|+|.+++.+..
T Consensus        10 ~v~ap~~G~v~~~~V-~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G   64 (77)
T d1dcza_          10 EIPAPLAGTVSKILV-KEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKER   64 (77)
T ss_dssp             EEEBSSSCEEEEECC-CTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTT
T ss_pred             EEECCCCcEEEEEEc-CCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCC
Confidence            334567899988855 9999999999999999999999999999999999986654

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=1.2e-08  Score=66.70  Aligned_cols=41  Identities=24%  Similarity=0.349  Sum_probs=37.9

Q ss_pred             CCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        75 p~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      .++|++|++||+++.||++|+..++.||.+|+|.+++.+..
T Consensus        27 V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G   67 (80)
T d1bdoa_          27 IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG   67 (80)
T ss_dssp             CCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTT
T ss_pred             ccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCC
Confidence            48999999999999999999999999999999999985543

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.69  E-value=2.8e-09  Score=69.74  Aligned_cols=48  Identities=25%  Similarity=0.361  Sum_probs=40.9

Q ss_pred             CeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           68 EVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        68 ~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      .|..+ +.++|+.|++||+++.||++|+..+|.||.+|+|.+++.+..+
T Consensus        17 ~i~~w-~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd   64 (80)
T d1laba_          17 EIVKW-FVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT   64 (80)
T ss_dssp             EEEEC-CCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSS
T ss_pred             EEEEE-EeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCC
Confidence            34443 3599999999999999999999999999999999998766543

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.67  E-value=1e-08  Score=66.60  Aligned_cols=48  Identities=40%  Similarity=0.498  Sum_probs=42.3

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      |+|..+. .++|+.|++||+++.||++|+..++.||.+|+|.++..+..
T Consensus        13 g~i~~~~-v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G   60 (79)
T d1iyua_          13 GEVIELL-VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLG   60 (79)
T ss_dssp             EEEEEEC-CCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTT
T ss_pred             EEEEEEE-ecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCC
Confidence            5677663 49999999999999999999999999999999999976544

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=1.5e-08  Score=65.88  Aligned_cols=47  Identities=26%  Similarity=0.369  Sum_probs=40.6

Q ss_pred             eEEE-cCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           70 VFVE-LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        70 ~~v~-lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      ..++ +.++|+.|++||+++.||++|+..++.||.+|+|.+++.+..+
T Consensus        16 ~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~   63 (80)
T d1qjoa_          16 EVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD   63 (80)
T ss_dssp             EEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTC
T ss_pred             EEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCC
Confidence            3344 3599999999999999999999999999999999999866543

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=8.5e-09  Score=68.37  Aligned_cols=49  Identities=22%  Similarity=0.176  Sum_probs=41.9

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~  116 (130)
                      |.|+.+ +.++|+.|++||+++.||++|+..++.||.+|+|.+++.+..+
T Consensus        19 g~i~~w-~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~   67 (87)
T d1k8ma_          19 VTVKEW-YVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDD   67 (87)
T ss_dssp             EEEEEE-CCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSC
T ss_pred             EEEEEE-EcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCC
Confidence            344444 4599999999999999999999999999999999999866553

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.60  E-value=3e-08  Score=64.44  Aligned_cols=48  Identities=21%  Similarity=0.201  Sum_probs=40.9

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      |.|..+ +.++|+.|++||+++.||++|+..++.||.+|+|.+++.+..
T Consensus        16 g~i~~w-~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~G   63 (79)
T d1ghja_          16 GTVATW-HKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG   63 (79)
T ss_dssp             EEECCC-SSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTT
T ss_pred             EEEEEE-EcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCC
Confidence            334433 358999999999999999999999999999999999986654

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.59  E-value=6.2e-09  Score=67.94  Aligned_cols=42  Identities=29%  Similarity=0.337  Sum_probs=38.0

Q ss_pred             cCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           74 LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        74 lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      +.++|++|++||+++.||++|+..++.||.+|+|.+++.+..
T Consensus        22 ~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G   63 (81)
T d1gjxa_          22 EVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVG   63 (81)
T ss_dssp             CCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSS
T ss_pred             EeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCC
Confidence            358999999999999999999999999999999998875543

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=7.6e-08  Score=65.37  Aligned_cols=48  Identities=19%  Similarity=0.171  Sum_probs=41.6

Q ss_pred             CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      |.|... +.++|+.|++||+|+.||++|+..+|.||.+|.|.++.....
T Consensus        20 g~i~~w-~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eG   67 (102)
T d1y8ob1          20 GTVQRW-EKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEG   67 (102)
T ss_dssp             EEEEEE-CSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTT
T ss_pred             EEEEEE-EeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccC
Confidence            456655 469999999999999999999999999999999999865544

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=2.3e-08  Score=65.30  Aligned_cols=42  Identities=17%  Similarity=0.113  Sum_probs=38.4

Q ss_pred             cCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928           74 LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT  115 (130)
Q Consensus        74 lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~  115 (130)
                      +.++|+.|++||+++.||++|+..++.||.+|+|.+++.+..
T Consensus        23 ~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~G   64 (80)
T d1pmra_          23 HKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG   64 (80)
T ss_dssp             CCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTT
T ss_pred             EeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCC
Confidence            468999999999999999999999999999999998876654

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=84.15  E-value=0.35  Score=30.01  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=26.5

Q ss_pred             eecchhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928           59 TDHAQDHLGEVVFVELPETGASVKQGGGFGVVE   91 (130)
Q Consensus        59 Td~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE   91 (130)
                      ++.....-|.|..+.+ +.|+.|+.||+|+.||
T Consensus        49 ~~i~a~~~G~v~~i~v-~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          49 NQIEADKSGTVKAILV-ESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSCEEEEEECS-CTTCEECTTCEEEEEC
T ss_pred             EEEEcCCCeEEEEEEe-CCCCEECCCCEEEEEC
Confidence            3455667798998865 8899999999999987

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=80.80  E-value=0.82  Score=27.88  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=26.4

Q ss_pred             cchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928           61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVK   94 (130)
Q Consensus        61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K   94 (130)
                      +-...-|.|..+.. ++|+.|+.|++|+.||...
T Consensus        44 i~a~~~G~v~~i~v-~~G~~V~~G~~l~~ie~~~   76 (79)
T d1iyua_          44 VPSPKAGVVKSVSV-KLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             EECSSSSEEEEESC-CTTCEEETTSEEEEEECCC
T ss_pred             EEeccccEEEEEee-CCCCEECCCCEEEEEecCc
Confidence            34556788887744 8999999999999998654

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.16  E-value=0.26  Score=34.34  Aligned_cols=30  Identities=17%  Similarity=0.176  Sum_probs=23.9

Q ss_pred             hhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928           63 QDHLGEVVFVELPETGASVKQGGGFGVVESV   93 (130)
Q Consensus        63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~   93 (130)
                      -+.-|.|..+. .++|+.|++||+|+.|++.
T Consensus        20 s~v~G~V~~v~-V~~G~~VkkGq~L~~ld~~   49 (237)
T d1vf7a_          20 PQVNGIILKRL-FKEGSDVKAGQQLYQIDPA   49 (237)
T ss_dssp             CSSCEEEEECC-SCSSEEECTTSEEEEECCH
T ss_pred             eecCEEEEEEE-CCCcCEECCCCEEEEEehH
Confidence            45567787774 4899999999999999654