Citrus Sinensis ID: 032960

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYSRTN
Secondary Structure (PSIPRED)
cHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccHHHHHHHHHHHHcccEEEEEEEEEEccHccHHHEcccccHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
meeelidavpcsslaVDAILRIGTAGAiwglcagpqlarkrglsgitRASFVAKSIGKYGFQCGLVagvfsstrcgiqryRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAaadysrtn
Flexible Loop (DISEMBL)
meeelidavpcssLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAfsaaadysrtn
Low Complexity Region (SEG)
MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNaliagavtgaaiaagtRRWTQVIGVAGIVSAFSAAADYSRTN
Disordered region (IsUnstruct)
*****IDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAA*******
Disordered Region (DISOPRED)
***E***AVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKR*********F*AKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYSRT*
Disordered Region (DISEMBL)
********VPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSA********
Disordered Region (DISPRO)
*EEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYSRTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q9LZH8	136	Outer envelope pore prote	yes	no	0.992	0.948	0.682	3e-44
Q9ZV24	148	Outer envelope pore prote	no	no	0.830	0.729	0.333	3e-08
Q5BIN4	194	Mitochondrial import inne	yes	no	0.569	0.381	0.392	3e-06
Q41050	146	Outer envelope pore prote	N/A	no	0.8	0.712	0.307	6e-06
Q9JKW1	192	Mitochondrial import inne	yes	no	0.569	0.385	0.379	9e-06
Q9CQ85	194	Mitochondrial import inne	yes	no	0.592	0.396	0.378	1e-05
Q9Y584	194	Mitochondrial import inne	yes	no	0.569	0.381	0.392	1e-05
Q5U4U5	184	Mitochondrial import inne	N/A	no	0.469	0.331	0.387	2e-05
Q5M7K0	186	Mitochondrial import inne	yes	no	0.592	0.413	0.353	3e-05
Q6BZY4	185	Mitochondrial import inne	yes	no	0.507	0.356	0.411	4e-05

>sp|Q9LZH8|OP164_ARATH Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis thaliana GN=OEP164 PE=2 SV=1

 Score =  176 bits (446), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/129 (68%), Positives = 112/129 (86%)

Query: 1   MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60
           MEEEL+ AVPCSSL V+++LR+ TAG ++GLCAGP+ ARK GLSG+++ASFVAKSIG++G
Sbjct: 1   MEEELLSAVPCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFG 60

Query: 61  FQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAF 120
           FQCGLV+GVF+ T CG+QRYR +NDWVNAL+ GAV GAA+A  TR WTQV+G+AG+VSAF
Sbjct: 61  FQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAF 120

Query: 121 SAAADYSRT 129
           S  A+ +RT
Sbjct: 121 SVLANCTRT 129

Voltage-dependent high-conductance channel with a slightly cation-selectivity; selective for amino acids but excludes triosephosphates or uncharged sugars (By similarity). Non-essential amino acid-selective channel protein and translocation pore for NADPH:protochlorophyllide oxidoreductase A (PORA) and possibly PORB.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV24|OP161_ARATH Outer envelope pore protein 16-1, chloroplastic OS=Arabidopsis thaliana GN=OEP161 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 51/108 (47%)

Query: 10  PCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGV 69
           P  +L VDA L+IG  G    L      A  +G    +      K + K G   G   GV
Sbjct: 24  PFLNLTVDAFLKIGAVGVTKSLAEDTYKAIDKGSLSKSTLEHALKKLCKEGVYWGAAGGV 83

Query: 70  FSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIV 117
           +  T  GI+R R   DW NA++AGA TGA ++A  ++    I +  I+
Sbjct: 84  YIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKKGKDTIVIDAIL 131

Voltage-dependent high-conductance channel with a slightly cation-selectivity; selective for amino acids but excludes triosephosphates or uncharged sugars (By similarity). Non-essential amino acid-selective channel protein and translocation pore for NADPH:protochlorophyllide oxidoreductase A (PORA) and possibly PORB. Involved in PORA precursor (pPORA) import and thus confers photoprotection onto etiolated seedlings during greening.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5BIN4|TIM22_BOVIN Mitochondrial import inner membrane translocase subunit Tim22 OS=Bos taurus GN=TIMM22 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 52  VAKSIGK----YGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRW 107
           V K +G+    Y     +V  +FS T C ++ YR ++DW N++I+G +TG AI       
Sbjct: 114 VLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGLK 173

Query: 108 TQVIGVAGIVSAFSAAADY 126
             VIG  G  +AFSAA DY
Sbjct: 174 AGVIGCGGF-AAFSAAIDY 191

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Bos taurus (taxid: 9913)

>sp|Q41050|OEP16_PEA Outer envelope pore protein 16, chloroplastic OS=Pisum sativum GN=OEP16 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 46/104 (44%)

Query: 10  PCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGV 69
           P  +L VD  L+IG   A   +        ++G           K + K G   G +AGV
Sbjct: 24  PFLNLTVDGFLKIGAVAATRSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGV 83

Query: 70  FSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGV 113
           +     G++R R   DW NA+  GAVTGA ++A +      I V
Sbjct: 84  YVGMEYGVERIRGTRDWKNAMFGGAVTGALVSAASNNKKDKIAV 127

Voltage-dependent high-conductance channel with a slightly cation-selectivity; selective for amino acids but excludes triosephosphates or uncharged sugars. Non-essential amino acid-selective channel protein and translocation pore for NADPH:protochlorophyllide oxidoreductase A (PORA) and possibly PORB.

Pisum sativum (taxid: 3888)

>sp|Q9JKW1|TIM22_RAT Mitochondrial import inner membrane translocase subunit Tim22 OS=Rattus norvegicus GN=Timm22 PE=2 SV=2

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query: 52  VAKSIGK----YGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRW 107
           V K +G+    Y     +V  +FS T C ++ YR ++DW N++I+G +TG AI       
Sbjct: 112 VLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGVK 171

Query: 108 TQVIGVAGIVSAFSAAADY 126
              IG  G  +AFSAA DY
Sbjct: 172 AGAIGCGGF-AAFSAAIDY 189

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQ85|TIM22_MOUSE Mitochondrial import inner membrane translocase subunit Tim22 OS=Mus musculus GN=Timm22 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 49  ASFVAKSIGK----YGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGT 104
           A  V K +G+    Y     +V  +FS T C ++ YR ++DW N++I+G +TG AI    
Sbjct: 111 AKEVLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRA 170

Query: 105 RRWTQVIGVAGIVSAFSAAADY 126
                 IG  G  +AFSAA DY
Sbjct: 171 GVKAGAIGCGGF-AAFSAAIDY 191

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Mus musculus (taxid: 10090)

>sp|Q9Y584|TIM22_HUMAN Mitochondrial import inner membrane translocase subunit Tim22 OS=Homo sapiens GN=TIMM22 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 52  VAKSIGK----YGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRW 107
           V K +G+    Y     +V  +FS T C I+ YR  +DW N++I+G +TG AI       
Sbjct: 114 VLKDMGQRGMSYAKNFAIVGAMFSCTECLIESYRGTSDWKNSVISGCITGGAIGFRAGLK 173

Query: 108 TQVIGVAGIVSAFSAAADY 126
              IG  G  +AFSAA DY
Sbjct: 174 AGAIGCGGF-AAFSAAIDY 191

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Homo sapiens (taxid: 9606)

>sp|Q5U4U5|TIM22_XENLA Mitochondrial import inner membrane translocase subunit Tim22 OS=Xenopus laevis GN=timm22 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 65  LVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAA 124
           +V  +FS T C ++ YR ++DW N++++G +TG AI         V+G  G  +AFSA  
Sbjct: 121 IVGAMFSCTECLVESYRGKSDWKNSVMSGCITGGAIGFRAGLKAGVLGCGGF-AAFSAVI 179

Query: 125 DY 126
           DY
Sbjct: 180 DY 181

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Xenopus laevis (taxid: 8355)

>sp|Q5M7K0|TIM22_XENTR Mitochondrial import inner membrane translocase subunit Tim22 OS=Xenopus tropicalis GN=timm22 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 49  ASFVAKSIGKYGF----QCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGT 104
           A  V K +G+ G        +V  +FS T C ++ YR ++DW N++I+G +TG AI    
Sbjct: 103 AKEVLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRA 162

Query: 105 RRWTQVIGVAGIVSAFSAAADY 126
                 +G  G  +AFSA  DY
Sbjct: 163 GLKAGALGCGGF-AAFSAVIDY 183

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Xenopus tropicalis (taxid: 8364)

>sp|Q6BZY4|TIM22_YARLI Mitochondrial import inner membrane translocase subunit TIM22 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TIM22 PE=3 SV=2

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 64  GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAA 123
           G + GVFS T C I+  R +ND  N + AG +TG  +A        ++G AG  +AFSAA
Sbjct: 108 GFIGGVFSGTECCIESLRAKNDIWNGVAAGCLTGGGLAVKAGPQAALVGCAGF-AAFSAA 166

Query: 124 AD-YSRTN 130
            D Y R++
Sbjct: 167 IDVYMRSD 174

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
224128474	130	predicted protein [Populus trichocarpa]	0.992	0.992	0.790	2e-47
255564184	130	protein translocase, putative [Ricinus c	1.0	1.0	0.746	1e-45
15229339	136	translocase Oep16 [Arabidopsis thaliana]	0.992	0.948	0.682	3e-42
449436491	130	PREDICTED: outer envelope pore protein 1	0.992	0.992	0.689	2e-41
297821202	134	atoep16-4 [Arabidopsis lyrata subsp. lyr	1.0	0.970	0.661	2e-41
388517587	132	unknown [Lotus japonicus]	1.0	0.984	0.674	3e-40
356535189	132	PREDICTED: uncharacterized protein LOC10	1.0	0.984	0.674	6e-39
297743894	130	unnamed protein product [Vitis vinifera]	0.984	0.984	0.679	1e-38
357442481	129	hypothetical protein MTR_1g088460 [Medic	0.992	1.0	0.674	4e-37
116790645	143	unknown [Picea sitchensis]	0.992	0.902	0.476	2e-23

>gi|224128474|ref|XP_002320341.1| predicted protein [Populus trichocarpa] gi|222861114|gb|EEE98656.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/129 (79%), Positives = 118/129 (91%)

Query: 1   MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60
           MEEELI AVPCSSLAVD++LR+GTAGAIWG C GP  ARKRGL+G+ +ASFVAK+IGK+G
Sbjct: 1   MEEELIGAVPCSSLAVDSVLRVGTAGAIWGSCIGPYDARKRGLTGVAQASFVAKTIGKFG 60

Query: 61  FQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAF 120
           FQCGLVAGVF++T CGIQRYR+QNDWVN LIAGAV GAA+AAGTR WTQV+G+AG+VSAF
Sbjct: 61  FQCGLVAGVFTATCCGIQRYRRQNDWVNPLIAGAVAGAAVAAGTRSWTQVVGMAGLVSAF 120

Query: 121 SAAADYSRT 129
           S AADYS+T
Sbjct: 121 SVAADYSKT 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564184|ref|XP_002523089.1| protein translocase, putative [Ricinus communis] gi|223537651|gb|EEF39274.1| protein translocase, putative [Ricinus communis]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 97/130 (74%), Positives = 116/130 (89%)

Query: 1   MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60
           ME+EL   +PCSS AVD+ILR+GTAGAIWGLC GP  ARKRGL+G ++ASFVAKS+GK+ 
Sbjct: 1   MEDELYGDIPCSSYAVDSILRVGTAGAIWGLCIGPHNARKRGLTGASQASFVAKSVGKFS 60

Query: 61  FQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAF 120
           FQCGLVAGVF+ T CGI+RYR++NDWVNALIAGAV GAA+AAGTR WTQV+G+AG+VSAF
Sbjct: 61  FQCGLVAGVFTFTHCGIRRYRRKNDWVNALIAGAVAGAAVAAGTRNWTQVVGMAGLVSAF 120

Query: 121 SAAADYSRTN 130
           S AADYS+T+
Sbjct: 121 SVAADYSKTS 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229339|ref|NP_191847.1| translocase Oep16 [Arabidopsis thaliana] gi|79316160|ref|NP_001030919.1| translocase Oep16 [Arabidopsis thaliana] gi|75181276|sp|Q9LZH8.1|OP164_ARATH RecName: Full=Outer envelope pore protein 16-4, chloroplastic; AltName: Full=Chloroplastic outer envelope pore protein of 16 kDa 4; Short=AtOEP16-4; Short=OEP16-4 gi|7362768|emb|CAB83138.1| putative protein [Arabidopsis thaliana] gi|26450248|dbj|BAC42241.1| unknown protein [Arabidopsis thaliana] gi|28827678|gb|AAO50683.1| unknown protein [Arabidopsis thaliana] gi|332646884|gb|AEE80405.1| translocase Oep16 [Arabidopsis thaliana] gi|332646885|gb|AEE80406.1| translocase Oep16 [Arabidopsis thaliana]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 88/129 (68%), Positives = 112/129 (86%)

Query: 1   MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60
           MEEEL+ AVPCSSL V+++LR+ TAG ++GLCAGP+ ARK GLSG+++ASFVAKSIG++G
Sbjct: 1   MEEELLSAVPCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFG 60

Query: 61  FQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAF 120
           FQCGLV+GVF+ T CG+QRYR +NDWVNAL+ GAV GAA+A  TR WTQV+G+AG+VSAF
Sbjct: 61  FQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAF 120

Query: 121 SAAADYSRT 129
           S  A+ +RT
Sbjct: 121 SVLANCTRT 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436491|ref|XP_004136026.1| PREDICTED: outer envelope pore protein 16-4, chloroplastic-like [Cucumis sativus] gi|449498503|ref|XP_004160555.1| PREDICTED: outer envelope pore protein 16-4, chloroplastic-like [Cucumis sativus]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 110/129 (85%)

Query: 1   MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60
           ME+EL   VPCSSLAV++ +R+GTAGA+WGLC GP  +RK GL+G+  A+FVA+S+GKYG
Sbjct: 1   MEDELNGVVPCSSLAVESSIRVGTAGALWGLCLGPYNSRKNGLTGVAHAAFVARSVGKYG 60

Query: 61  FQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAF 120
           FQCGLVAG F+ T CGIQRYRK+NDW+N LIAGAV GAAIA  TR W+QV+G+A +VSAF
Sbjct: 61  FQCGLVAGTFTLTHCGIQRYRKRNDWLNGLIAGAVAGAAIATKTRSWSQVVGMAALVSAF 120

Query: 121 SAAADYSRT 129
           SAAA+YSR+
Sbjct: 121 SAAAEYSRS 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821202|ref|XP_002878484.1| atoep16-4 [Arabidopsis lyrata subsp. lyrata] gi|297324322|gb|EFH54743.1| atoep16-4 [Arabidopsis lyrata subsp. lyrata]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/130 (66%), Positives = 112/130 (86%)

Query: 1   MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60
           MEEEL+ AVPCSSL V++++R+ TAG ++GLCAGP+ ARK GLSG+++AS+VAKSIG++G
Sbjct: 1   MEEELLSAVPCSSLTVESVIRVATAGGLYGLCAGPRDARKIGLSGVSQASYVAKSIGRFG 60

Query: 61  FQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAF 120
           FQCGLV+GVF+ T CG+QRYR +NDWVNAL+ GAV GAA+A  TR WTQV+G+AG+VSAF
Sbjct: 61  FQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAF 120

Query: 121 SAAADYSRTN 130
           S  A+ +RT 
Sbjct: 121 SVLANCTRTE 130

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517587|gb|AFK46855.1| unknown [Lotus japonicus]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/132 (67%), Positives = 109/132 (82%), Gaps = 2/132 (1%)

Query: 1   MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60
           MEE+L + VPCSSLAV++ LR+GTAGAIWGLC GP  AR++GL+GI R SFVA ++GK+G
Sbjct: 1   MEEDLNNVVPCSSLAVESSLRVGTAGAIWGLCYGPYEARQQGLTGIPRVSFVANTVGKFG 60

Query: 61  FQCGLVAGVFSSTRCGIQRYRKQNDWVNALI--AGAVTGAAIAAGTRRWTQVIGVAGIVS 118
            +CGLVAGVFS TRC I++YR+Q+DWVN LI  A A    A+AAGTR+WTQVIG+ G VS
Sbjct: 61  IRCGLVAGVFSITRCRIRQYRRQDDWVNGLIAGAVAGASVAVAAGTRKWTQVIGMTGFVS 120

Query: 119 AFSAAADYSRTN 130
           AF AAADYSRT+
Sbjct: 121 AFCAAADYSRTS 132

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535189|ref|XP_003536131.1| PREDICTED: uncharacterized protein LOC100786629 [Glycine max]

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 89/132 (67%), Positives = 107/132 (81%), Gaps = 2/132 (1%)

Query: 1   MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60
           MEE+L    PCSSLAV+A++R+G AGAIWGLCAGP  AR++GL G  +ASFVAKS+G++G
Sbjct: 1   MEEDLDGVAPCSSLAVEAMIRVGAAGAIWGLCAGPYDARQQGLRGSAKASFVAKSVGRFG 60

Query: 61  FQCGLVAGVFSSTRCGIQRYRKQNDWVNALI--AGAVTGAAIAAGTRRWTQVIGVAGIVS 118
            +CG VAGVFS TRCG+QRYR +NDWVN LI  A A   AA AAGTR W+QVIG+AG+VS
Sbjct: 61  TRCGFVAGVFSITRCGVQRYRGRNDWVNGLIGGAVAGAAAAAAAGTRSWSQVIGMAGLVS 120

Query: 119 AFSAAADYSRTN 130
            F AAADYSRT+
Sbjct: 121 VFCAAADYSRTS 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743894|emb|CBI36864.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/128 (67%), Positives = 104/128 (81%)

Query: 1   MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60
           ME +    VPCSSLAVD+ILR+GTAGAIWGLC  P  A K+GL+G++R +FVAKS+GK  
Sbjct: 1   MEGDFEGFVPCSSLAVDSILRVGTAGAIWGLCMSPYDASKKGLTGLSRTAFVAKSVGKIS 60

Query: 61  FQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAF 120
           FQCGLVAGVFS TRC +QR+R+QNDWVN  IAGAV GA +AA TR W QV+G+AG+VSA 
Sbjct: 61  FQCGLVAGVFSGTRCVVQRHRRQNDWVNGFIAGAVAGATVAARTRSWKQVVGMAGLVSAC 120

Query: 121 SAAADYSR 128
           SAAADY +
Sbjct: 121 SAAADYYK 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442481|ref|XP_003591518.1| hypothetical protein MTR_1g088460 [Medicago truncatula] gi|355480566|gb|AES61769.1| hypothetical protein MTR_1g088460 [Medicago truncatula]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 102/129 (79%)

Query: 1   MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60
           MEE+  DAVPCSSLAV+++LR+GTAGAIWGLC GP  A  +GL GI RASFVA S+  YG
Sbjct: 1   MEEDQNDAVPCSSLAVESMLRVGTAGAIWGLCTGPYDATIQGLRGIPRASFVANSVRIYG 60

Query: 61  FQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAF 120
            QCGLVAGVFS TRCG+++YR +NDWVN LI GAV GA +AA TR   QV G+AG+VS F
Sbjct: 61  TQCGLVAGVFSITRCGVKKYRGRNDWVNGLIGGAVAGATVAARTRSRMQVFGMAGLVSVF 120

Query: 121 SAAADYSRT 129
            A A+YSRT
Sbjct: 121 CAVAEYSRT 129

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116790645|gb|ABK25689.1| unknown [Picea sitchensis]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/130 (47%), Positives = 81/130 (62%), Gaps = 1/130 (0%)

Query: 1   MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60
           M + L +  PCSS AV+A +R   AG  WG+  GP    K    G TRA  VAK +GK G
Sbjct: 7   MWKVLEEGPPCSSRAVEAFVRFAVAGLTWGMFIGPYEVTKVS-QGSTRAILVAKLVGKCG 65

Query: 61  FQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAF 120
            QCG  AG++++  CGI+RYR++ DWVNA IAGA TGA IAA TR   Q+ G+A   SA 
Sbjct: 66  LQCGSFAGIYTAFSCGIERYRRKKDWVNASIAGATTGAIIAARTRNVRQICGLAIQFSAL 125

Query: 121 SAAADYSRTN 130
           + + +Y + N
Sbjct: 126 TTSLEYLKPN 135

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2081615	136	ATOEP16-4 "AT3G62880" [Arabido	0.992	0.948	0.604	2e-40
TAIR|locus:2053185	148	OEP16-1 "outer plastid envelop	0.884	0.777	0.260	2.6e-06
UNIPROTKB|Q41050	146	OEP16 "Outer envelope pore pro	0.892	0.794	0.252	0.00017
UNIPROTKB|F1NVE2	194	TIMM22 "Uncharacterized protei	0.592	0.396	0.317	0.00027
UNIPROTKB|J9NS76	193	TIMM22 "Uncharacterized protei	0.592	0.398	0.317	0.00035
UNIPROTKB|F1RHK3	199	TIMM22 "Uncharacterized protei	0.592	0.386	0.317	0.00038
UNIPROTKB|Q5BIN4	194	TIMM22 "Mitochondrial import i	0.569	0.381	0.316	0.00046

TAIR|locus:2081615 ATOEP16-4 "AT3G62880" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 78/129 (60%), Positives = 100/129 (77%)

Query:     1 MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60
             MEEEL+ AVPCSSL V+++LR+ TAG ++GLCAGP+ ARK GLSG+++ASFVAKSIG++G
Sbjct:     1 MEEELLSAVPCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFG 60

Query:    61 FQCGLVAGVFSSTRCGIQRYRKQNDWVNXXXXXXXXXXXXXXXXRRWTQVIGVAGIVSAF 120
             FQCGLV+GVF+ T CG+QRYR +NDWVN                R WTQV+G+AG+VSAF
Sbjct:    61 FQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAF 120

Query:   121 SAAADYSRT 129
             S  A+ +RT
Sbjct:   121 SVLANCTRT 129

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009527 "plastid outer membrane" evidence=ISS

TAIR|locus:2053185 OEP16-1 "outer plastid envelope protein 16-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 30/115 (26%), Positives = 41/115 (35%)

Query:    10 PCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGV 69
             P  +L VDA L+IG  G    L      A  +G    +      K + K G   G   GV
Sbjct:    24 PFLNLTVDAFLKIGAVGVTKSLAEDTYKAIDKGSLSKSTLEHALKKLCKEGVYWGAAGGV 83

Query:    70 FSSTRCGIQRYRKQNDWVNXXXXXXXXXXXXXXXXRRWTQVIGVAGIVSAFSAAA 124
             +  T  GI+R R   DW N                ++    I +  I+    A A
Sbjct:    84 YIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKKGKDTIVIDAILGGALATA 138

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP;RCA

GO:0009749 "response to glucose stimulus" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0009527 "plastid outer membrane" evidence=IDA

GO:0045037 "protein import into chloroplast stroma" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q41050 OEP16 "Outer envelope pore protein 16, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 30/119 (25%), Positives = 45/119 (37%)

Query:    10 PCSSLAVDAILRIGTAGAIWGLCAGP-QLARKRGLSGITRASFVAKSIGKYGFQCGLVAG 68
             P  +L VD  L+IG   A   +      + RK  +S       + K + K G   G +AG
Sbjct:    24 PFLNLTVDGFLKIGAVAATRSVAEDTFHIIRKGSISSNDFEKSL-KKMCKEGAYWGAIAG 82

Query:    69 VFSSTRCGIQRYRKQNDWVNXXXXXXXXXXXXXXXXRRWTQVIGVAGIV-SAFSAAADY 126
             V+     G++R R   DW N                      I V  I  +A + AA++
Sbjct:    83 VYVGMEYGVERIRGTRDWKNAMFGGAVTGALVSAASNNKKDKIAVDAITGAAIATAAEF 141

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045037 "protein import into chloroplast stroma" evidence=IDA

UNIPROTKB|F1NVE2 TIMM22 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 92 (37.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 26/82 (31%), Positives = 35/82 (42%)

Query:    49 ASFVAKSIGKYGFQCG----LVAGVFSSTRCGIQRYRKQNDWVNXXXXXXXXXXXXXXXX 104
             A  V K +G+ G        +V  +FS T C ++ YR ++DW N                
Sbjct:   111 AKEVLKDMGQRGISYAKNFAIVGAMFSCTECVVESYRGKSDWRNSVISGCITGGAIGFRA 170

Query:   105 RRWTQVIGVAGIVSAFSAAADY 126
                  VIG  G  +AFSAA DY
Sbjct:   171 GMKAGVIGCGGF-AAFSAAIDY 191

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|J9NS76 TIMM22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 91 (37.1 bits), Expect = 0.00035, P = 0.00035
 Identities = 26/82 (31%), Positives = 35/82 (42%)

Query:    49 ASFVAKSIGKYGFQCG----LVAGVFSSTRCGIQRYRKQNDWVNXXXXXXXXXXXXXXXX 104
             A  V K +G+ G        +V  +FS T C ++ YR ++DW N                
Sbjct:   110 AKEVLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRA 169

Query:   105 RRWTQVIGVAGIVSAFSAAADY 126
                  VIG  G  +AFSAA DY
Sbjct:   170 GLKAGVIGCGGF-AAFSAAIDY 190

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RHK3 TIMM22 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 91 (37.1 bits), Expect = 0.00038, P = 0.00038
 Identities = 26/82 (31%), Positives = 35/82 (42%)

Query:    49 ASFVAKSIGKYGFQCG----LVAGVFSSTRCGIQRYRKQNDWVNXXXXXXXXXXXXXXXX 104
             A  V K +G+ G        +V  +FS T C ++ YR ++DW N                
Sbjct:   116 AKEVLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRA 175

Query:   105 RRWTQVIGVAGIVSAFSAAADY 126
                  VIG  G  +AFSAA DY
Sbjct:   176 GLKAGVIGCGGF-AAFSAAIDY 196

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5BIN4 TIMM22 "Mitochondrial import inner membrane translocase subunit Tim22" [Bos taurus (taxid:9913)]

 Score = 90 (36.7 bits), Expect = 0.00046, P = 0.00046
 Identities = 25/79 (31%), Positives = 34/79 (43%)

Query:    52 VAKSIGKYGFQCG----LVAGVFSSTRCGIQRYRKQNDWVNXXXXXXXXXXXXXXXXRRW 107
             V K +G+ G        +V  +FS T C ++ YR ++DW N                   
Sbjct:   114 VLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGLK 173

Query:   108 TQVIGVAGIVSAFSAAADY 126
               VIG  G  +AFSAA DY
Sbjct:   174 AGVIGCGGF-AAFSAAIDY 191


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      130       114   0.00091  102 3  11 22  0.42    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  124 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.62u 0.16s 8.78t   Elapsed:  00:00:01
  Total cpu time:  8.62u 0.16s 8.78t   Elapsed:  00:00:01
  Start:  Fri May 10 08:47:16 2013   End:  Fri May 10 08:47:17 2013

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LZH8	OP164_ARATH	No assigned EC number	0.6821	0.9923	0.9485	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	8e-13
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	2e-04
TIGR00980	170	TIGR00980, 3a0801so1tim17, mitochondrial import in	0.002

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score = 60.4 bits (147), Expect = 8e-13
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 8/124 (6%)

Query: 10  PCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGIT---RASFVAKSIGK----YGFQ 62
           PC    V         GA++G   G        L       R + V  + G+    +G  
Sbjct: 1   PCPERIVYDTGGGFLMGAVYGGFFGAPHGLVNALRSGPLKLRLNGVLNATGRRGPSHGNN 60

Query: 63  CGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSA 122
             +  G++S   C +++ R + D  N++IAGA+TGA +             A + +AFSA
Sbjct: 61  FAVFGGLYSGIECALEKLRGKEDPWNSIIAGALTGAVLGL-RGGPKAAAVGAAVGAAFSA 119

Query: 123 AADY 126
           A + 
Sbjct: 120 AIEG 123

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 68  GVFSSTRCGIQRYRKQNDWVNALIAGAVTGA--AIAAGTRRWTQVIGVAGIVSAF 120
           G+FS+  C +Q  R + D  NA+ +G  TG   AI  G R   +     GI+   
Sbjct: 71  GLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGI 125

Length = 164

>gnl|CDD|130053 TIGR00980, 3a0801so1tim17, mitochondrial import inner membrane translocase subunit tim17

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 60  GFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 102
           G    +  G+FS+  C +   RK+ D  N++I+G +TGAA+A 
Sbjct: 61  GGNFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAALAV 103

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
KOG3225	168	consensus Mitochondrial import inner membrane tran	99.97
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	99.96
PTZ00236	164	mitochondrial import inner membrane translocase su	99.96
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.95
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	99.92
KOG1652	183	consensus Mitochondrial import inner membrane tran	99.9
KOG3324	206	consensus Mitochondrial import inner membrane tran	99.75
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.63
KOG4096	75	consensus Uncharacterized conserved protein [Funct	97.36
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	97.35
PF10247	67	Romo1: Reactive mitochondrial oxygen species modul	97.28
KOG4608	270	consensus Uncharacterized conserved protein [Funct	96.87
KOG1398	460	consensus Uncharacterized conserved protein [Funct	94.92
PTZ00236	164	mitochondrial import inner membrane translocase su	89.1
PF08560	155	DUF1757: Protein of unknown function (DUF1757); In	83.29

>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2e-32  Score=195.71  Aligned_cols=125  Identities=27%  Similarity=0.392  Sum_probs=112.2

Q ss_pred             ccccCCCchHHHHHHHHHHHHHHHHHHhhccchhhhh-----cCCchhhhH-HHHHHHhccchhhhHHHHHHhhhHHHHH
Q 032960            4 ELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARK-----RGLSGITRA-SFVAKSIGKYGFQCGLVAGVFSSTRCGI   77 (130)
Q Consensus         4 ~~~~~~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~fa~~g~~fs~~ec~~   77 (130)
                      .++.+++|+.|++.+.+.|..+|+++|+|.++++..+     ...+.++++ +++.+++.+++++|+++|.+|+++||.+
T Consensus        35 ~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~i  114 (168)
T KOG3225|consen   35 YLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLI  114 (168)
T ss_pred             HHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHH
Confidence            3567789999999999999999999999999998433     234445554 6677777788899999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 032960           78 QRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYSRT  129 (130)
Q Consensus        78 ~~~R~k~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~aa~s~a~d~~~~  129 (130)
                      |++|.|+||+|.+++||+||+.++.|+||++.++||++| ++||++||+|++
T Consensus       115 E~~RAK~D~~NgaiaG~vtGg~l~~raGp~a~~~G~agf-a~fS~~id~y~~  165 (168)
T KOG3225|consen  115 ESFRAKSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCAGF-AAFSAAIDKYMR  165 (168)
T ss_pred             HHHHhhhchhcceeeeeeeccchhhcccchhhhhchhHH-HHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999 999999999987

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=99.96  E-value=6e-29  Score=181.78  Aligned_cols=124  Identities=22%  Similarity=0.195  Sum_probs=94.7

Q ss_pred             CccccccCCCchHHHHHHHHHHHHHHHHHHhhccchh---hhhcCCchhhhHHHHHHHhccchhhhHHHHHHhhhHHHHH
Q 032960            1 MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQL---ARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGI   77 (130)
Q Consensus         1 ~~~~~~~~~~C~~rt~~~~~~g~~~G~~~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~fs~~ec~~   77 (130)
                      |++..  +||||+|+++++..+..+|.+.|.+...++   +.+.+..-+.-++.+.++.++.+.+|++||++|+++||.+
T Consensus         1 ~~~~~--r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i   78 (170)
T TIGR00980         1 MEEYT--REPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAV   78 (170)
T ss_pred             Ccccc--cCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            55555  899999999998655555554444444332   2222111111223344456667889999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHh
Q 032960           78 QRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYS  127 (130)
Q Consensus        78 ~~~R~k~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~aa~s~a~d~~  127 (130)
                      +++|+|||+||++++|++||++|++++|+++++.+|+.+ ++++++||+.
T Consensus        79 ~~~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~g-g~~la~ie~~  127 (170)
T TIGR00980        79 VAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILG-ACILAVIEGV  127 (170)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHhccChHHHHHHHHHH-HHHHHHHHHH
Confidence            999999999999999999999999999998888888777 9999999985

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=99.96  E-value=2.7e-28  Score=177.24  Aligned_cols=120  Identities=18%  Similarity=0.205  Sum_probs=88.3

Q ss_pred             cCCCchHHHHHHH---HHHHHHHHHHHhhccchhhhhcCCchhhhHHHHHHHhccchhhhHHHHHHhhhHHHHHHHHHhh
Q 032960            7 DAVPCSSLAVDAI---LRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQ   83 (130)
Q Consensus         7 ~~~~C~~rt~~~~---~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~fs~~ec~~~~~R~k   83 (130)
                      .+||||+|+++++   +.++.+|+..+.+...+.+.+.+..-+..++.+-++.++.+.+|+++|++|+++||.++++|+|
T Consensus         7 ~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~K   86 (164)
T PTZ00236          7 SREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLRGK   86 (164)
T ss_pred             CcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4899999999987   3334434444444444455455443223333444466777889999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHh
Q 032960           84 NDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYS  127 (130)
Q Consensus        84 ~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~aa~s~a~d~~  127 (130)
                      ||+||++++|++||++|++++|+++++.+++.. +++.++||.+
T Consensus        87 ~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~G-g~~~~~ie~~  129 (164)
T PTZ00236         87 EDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFG-GILLGIIELV  129 (164)
T ss_pred             CchHHHHHHHHHHHHHHHHhcChHHHHHHHHHH-HHHHHHHHHH
Confidence            999999999999999999999999776554433 6666666543

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.95  E-value=8.6e-27  Score=162.91  Aligned_cols=119  Identities=29%  Similarity=0.403  Sum_probs=108.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhccchhhhh---cCCchhhhHHHHHHHhcc----chhhhHHHHHHhhhHHHHHHHHHh
Q 032960           10 PCSSLAVDAILRIGTAGAIWGLCAGPQLARK---RGLSGITRASFVAKSIGK----YGFQCGLVAGVFSSTRCGIQRYRK   82 (130)
Q Consensus        10 ~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~fa~~g~~fs~~ec~~~~~R~   82 (130)
                      ||++|++++++.+..+|.++|.+.+.++...   ...+.+++++.+++.+.+    .+.+|+.++++|+++||.+|++|+
T Consensus         1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~   80 (128)
T PF02466_consen    1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG   80 (128)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8999999999999999999999999885322   244567788899999988    888999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 032960           83 QNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYSRT  129 (130)
Q Consensus        83 k~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~aa~s~a~d~~~~  129 (130)
                      |||+||++++|++||++++.+.+++..+.+++.+ ++++.++|++++
T Consensus        81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~-a~~~~~~~~~~~  126 (128)
T PF02466_consen   81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALG-AAFAAAVEYYGR  126 (128)
T ss_pred             ccccchhHHHHHHHHHHHHhccChHHHHHHHHHH-HHHHHHHHHHhc
Confidence            9999999999999999999999999999998888 999999999875

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=99.92  E-value=9e-25  Score=157.19  Aligned_cols=113  Identities=19%  Similarity=0.082  Sum_probs=99.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHhhccchhhhhcCCchhhhHHHHHHHhccch----hhhHHHHHHhhhHHHHHHHHHhh
Q 032960            8 AVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG----FQCGLVAGVFSSTRCGIQRYRKQ   83 (130)
Q Consensus         8 ~~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~fa~~g~~fs~~ec~~~~~R~k   83 (130)
                      .|+-.+++..+++.|.++|+++|++.+.++. +...+.|++++++++.+++++    .+|++++.+|+++||.++++|+|
T Consensus        31 ~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~-~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~~R~k  109 (149)
T TIGR00983        31 FEDLCFGTGTCYLTGLAIGALNGLRLGLKET-QSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGK  109 (149)
T ss_pred             hhhhhhhHhHHHHHHHHHHHHHHHHHHHhhC-CCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4566677888899999999999999998864 334566888999999888775    59999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHH
Q 032960           84 NDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSA  122 (130)
Q Consensus        84 ~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~aa~s~  122 (130)
                      ||+||++++|++||++|++++|+++++++|++. ++++.
T Consensus       110 ~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G-~~l~~  147 (149)
T TIGR00983       110 HDDFNSVAAGALTGALYKSTRGLRGMARSGALG-ATAAG  147 (149)
T ss_pred             chhhHhHHHHHHHHHHHHhccChHHHHHHhHHH-HHHhh
Confidence            999999999999999999999999999998877 55544

>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.9e-25  Score=161.16  Aligned_cols=117  Identities=25%  Similarity=0.279  Sum_probs=95.1

Q ss_pred             ccCCCchHHHHHHHHH---HHHHHH-----HHHhhccchhhhhcCCchhhhHHHHHHHhccchhhhHHHHHHhhhHHHHH
Q 032960            6 IDAVPCSSLAVDAILR---IGTAGA-----IWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGI   77 (130)
Q Consensus         6 ~~~~~C~~rt~~~~~~---g~~~G~-----~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~fs~~ec~~   77 (130)
                      +.+||||.|+++++-.   ++++|+     +.|+++++...     ..+..+..+..+.+..+.+||+||++||.+||.+
T Consensus         4 ~sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~-----r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~L   78 (183)
T KOG1652|consen    4 YSREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGA-----RLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCAL   78 (183)
T ss_pred             ccCCCCCceeeccccchhhhcccccceeeeeeeeecCCccc-----ccccchhhhhccCcccccceeeeechhhHHHHHH
Confidence            4589999999998733   333333     44444444333     2333456677889999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHhh
Q 032960           78 QRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYSR  128 (130)
Q Consensus        78 ~~~R~k~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~aa~s~a~d~~~  128 (130)
                      ..+|+|||+||++++|++||++|+.|+++++++-+|+.+ +++++.+|-+.
T Consensus        79 v~~R~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~-g~~lamieg~g  128 (183)
T KOG1652|consen   79 VAIRKKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITG-GLLLAMIEGLG  128 (183)
T ss_pred             HHHhcccchHHHHHHHhhccceeeccccHHHHHHHHHHH-HHHHHHHHhHH
Confidence            999999999999999999999999999999999998888 99999998653

>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=2.6e-18  Score=127.02  Aligned_cols=107  Identities=26%  Similarity=0.237  Sum_probs=95.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhccchhhhhcCCchhhhHHHHHHHhccchh----hhHHHHHHhhhHHHHHHHHHhhh
Q 032960            9 VPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGF----QCGLVAGVFSSTRCGIQRYRKQN   84 (130)
Q Consensus         9 ~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~fa~~g~~fs~~ec~~~~~R~k~   84 (130)
                      |+..+.|.-.++.|.++|+++|+..+..+... ..+.|++.++++++.++++.    +.++++.+|+.+|..++..|+||
T Consensus        75 E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e~-~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~d  153 (206)
T KOG3324|consen   75 ENLTFGTGWAYLTGSAIGAFNGLILGLKNTEN-GASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKD  153 (206)
T ss_pred             hhhheeccchhccchhhhhHHHHHHhhhcCCC-CCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhccc
Confidence            56667777788999999999999988776533 77889999999999999865    67899999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhcCcchhHHHHHHHHH
Q 032960           85 DWVNALIAGAVTGAAIAAGTRRWTQVIGVAGI  116 (130)
Q Consensus        85 D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~  116 (130)
                      |++|+++||++||+++...+|++++.++.+..
T Consensus       154 d~lnsv~AGalTGalyrs~~Glr~~av~ga~g  185 (206)
T KOG3324|consen  154 DDLNSVAAGALTGALYRSTRGLRAAAVAGAVG  185 (206)
T ss_pred             cchhhhhhhhhhhhhhhcCCCchHHHHHHHHH
Confidence            99999999999999999999999999987765

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=2.9e-17  Score=120.57  Aligned_cols=123  Identities=23%  Similarity=0.203  Sum_probs=104.6

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhhccchhhhhc---------------------CCchhhhHHHHHHHhccc----hh
Q 032960            7 DAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKR---------------------GLSGITRASFVAKSIGKY----GF   61 (130)
Q Consensus         7 ~~~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~----~~   61 (130)
                      +-+.|+.+++.+.+.|-.+|...|.+.++......                     ..+.+.|.+..++.+++.    +.
T Consensus        42 ~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~  121 (191)
T COG5596          42 FSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGK  121 (191)
T ss_pred             hhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHHHhhcccccccccccccc
Confidence            34479999999988888888888888876542111                     124567777888888876    45


Q ss_pred             hhHHHHHHhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHhhcC
Q 032960           62 QCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYSRTN  130 (130)
Q Consensus        62 ~fa~~g~~fs~~ec~~~~~R~k~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~aa~s~a~d~~~~~  130 (130)
                      +|++.|.+|.+.||.++.+|+|||+.|++.+|..||+.+..+.+++++.++.+.+ +++++.++.++|.
T Consensus       122 n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~~-aa~s~~~~~~~~~  189 (191)
T COG5596         122 NLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGF-AAFSAGITLAMKS  189 (191)
T ss_pred             ccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccch-hhhhhhHHhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999 9999999988763

>KOG4096 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.00041  Score=43.95  Aligned_cols=70  Identities=23%  Similarity=0.274  Sum_probs=58.3

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhhccchhhhhcCCchhhhHHHHHHHhccchhhhHHHHHHhhhHHHH
Q 032960            7 DAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCG   76 (130)
Q Consensus         7 ~~~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~fs~~ec~   76 (130)
                      ..++|..|.-+.++.|.++|...|++++.+.....+++.+..++.+-+.+-..+.+|+.+=++=+++.|.
T Consensus         3 ~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~   72 (75)
T KOG4096|consen    3 QQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGRGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG   72 (75)
T ss_pred             CCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChhHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence            4689999999999999999999999999998877777776666666677777788998887777777664

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=3.2e-05  Score=57.30  Aligned_cols=100  Identities=16%  Similarity=0.160  Sum_probs=67.6

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHhhccchhhhhcCC---chhhhHHHHHHHhccchhhhH-HHHHHhhhHHHHHHHHH
Q 032960            6 IDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGL---SGITRASFVAKSIGKYGFQCG-LVAGVFSSTRCGIQRYR   81 (130)
Q Consensus         6 ~~~~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~fa-~~g~~fs~~ec~~~~~R   81 (130)
                      |..+||+.-.+.++....-.+.+.+...+..+.-.-+.   .....+........-.+.+|+ ++|++++.++|..+++|
T Consensus        25 ~e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q  104 (191)
T COG5596          25 EERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQ  104 (191)
T ss_pred             hhcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHH
Confidence            36789999999887554444444443333322111111   111111112224445577898 89999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHhcCcc
Q 032960           82 KQNDWVNALIAGAVTGAAIAAGTR  105 (130)
Q Consensus        82 ~k~D~~Ns~~aG~~tGa~l~~~~g  105 (130)
                      .|.|.||....|+.||..++....
T Consensus       105 ~~~~~~n~~~rg~ftG~n~GvlGl  128 (191)
T COG5596         105 LKEQLNNAGKRGFFTGKNLGVLGL  128 (191)
T ss_pred             Hhhccccccccccccccccceeee
Confidence            999999999999999999888776

>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain

Probab=97.28  E-value=0.00059  Score=42.87  Aligned_cols=64  Identities=19%  Similarity=0.168  Sum_probs=49.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhccchhhhhcCCchhhhHHHHHHHhccchhhhHHHHHHhhh
Q 032960            9 VPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSS   72 (130)
Q Consensus         9 ~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~fs~   72 (130)
                      ++|.+|.-+.+..|+++|...|++.+.++....+.+.+..++.+-+.+-..+.+|+.+=++=+.
T Consensus         1 psc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~   64 (67)
T PF10247_consen    1 PSCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSV   64 (67)
T ss_pred             CcHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHHHHhhhcc
Confidence            5899999999999999999999999999877766665555666666666667777765444333

An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

>KOG4608 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.00054  Score=52.84  Aligned_cols=75  Identities=19%  Similarity=0.243  Sum_probs=53.2

Q ss_pred             HHhccchh----hhHHHHHHhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCcchhHHHHH---HHHHHHHHHHHHHH
Q 032960           54 KSIGKYGF----QCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIG---VAGIVSAFSAAADY  126 (130)
Q Consensus        54 ~~~~~~~~----~fa~~g~~fs~~ec~~~~~R~k~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g---~a~~~aa~s~a~d~  126 (130)
                      +...|.+.    ..|++.+.|-++...+.-+|+|+|.||-+++|.+||+++...-|++-.+-+   ++..|+..+.....
T Consensus       125 r~farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~aa~vilG~~lG~tv~~~l~l  204 (270)
T KOG4608|consen  125 RGFARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLAAGVILGALLGTTVGGLLML  204 (270)
T ss_pred             HHHhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHhhcceeehhhcchHHHHHHH
Confidence            33555554    446788888889999999999999999999999999999988875433322   12333455555444


Q ss_pred             hh
Q 032960          127 SR  128 (130)
Q Consensus       127 ~~  128 (130)
                      ++
T Consensus       205 ~q  206 (270)
T KOG4608|consen  205 FQ  206 (270)
T ss_pred             HH
Confidence            44

>KOG1398 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.92  E-value=0.032  Score=46.07  Aligned_cols=46  Identities=20%  Similarity=0.369  Sum_probs=39.0

Q ss_pred             cchhhhHHHHHHhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC
Q 032960           58 KYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAG  103 (130)
Q Consensus        58 ~~~~~fa~~g~~fs~~ec~~~~~R~k~D~~Ns~~aG~~tGa~l~~~  103 (130)
                      +.+.-.+.+-++|-.+.|.+.+++.+||..|++.||.+++--+...
T Consensus       301 qlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmfy  346 (460)
T KOG1398|consen  301 QLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMFY  346 (460)
T ss_pred             hhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeeec
Confidence            3455668899999999999999999999999999999987655444

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=89.10  E-value=5.2  Score=29.35  Aligned_cols=118  Identities=10%  Similarity=-0.046  Sum_probs=75.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhccchhhhhcCCchhhhHH-HHHHHhccchhhhHHHHHHhhhHHHHHHHHHhhhhhH
Q 032960            9 VPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRAS-FVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWV   87 (130)
Q Consensus         9 ~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~fa~~g~~fs~~ec~~~~~R~k~D~~   87 (130)
                      ++|-.--..+.+.|+..+.+.|+.+++......+..  ..++ ..-...++.+..-++..++...++..=+|-=-.+-.+
T Consensus        17 dd~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l--~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~K~D~~Nsi~   94 (164)
T PTZ00236         17 EDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGF--YLLRKRAPILGGNFAIWGGLFSTFDCTLQYLRGKEDHWNAIA   94 (164)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHH--HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            345555667788999999999999998765443211  1111 1222223334444566667777777666666667777


Q ss_pred             HHHHHHHHHHHHHhcCcchhHHHHHHHHHH--HHHHHHHHHhh
Q 032960           88 NALIAGAVTGAAIAAGTRRWTQVIGVAGIV--SAFSAAADYSR  128 (130)
Q Consensus        88 Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~--aa~s~a~d~~~  128 (130)
                      -..+.|.+-+.--+.++-..++++|++.++  ..++.++++++
T Consensus        95 AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~  137 (164)
T PTZ00236         95 SGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQ  137 (164)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777777777777777766777777766631  67778888765

>PF08560 DUF1757: Protein of unknown function (DUF1757); InterPro: IPR013869 This entry shows proteins that are about 150 amino acids in length and have no known function

Probab=83.29  E-value=15  Score=26.63  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=31.6

Q ss_pred             ccccccCCCchHHHHHHHHHHHHHHHHHHhhc-cchhh
Q 032960            2 EEELIDAVPCSSLAVDAILRIGTAGAIWGLCA-GPQLA   38 (130)
Q Consensus         2 ~~~~~~~~~C~~rt~~~~~~g~~~G~~~G~~~-~~~~~   38 (130)
                      |++++.-+|.+..+.--.+++.-+|.+.|.+. .|...
T Consensus        14 ~~l~~iP~P~~el~iHvt~k~~q~gs~lGsl~~~Pi~~   51 (155)
T PF08560_consen   14 EELQDIPNPKTELTIHVTFKGAQAGSFLGSLIVGPIYR   51 (155)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            57788899999999999999999999999887 55543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00