Citrus Sinensis ID: 032962

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAEEEAINNEEQS
Secondary Structure (PSIPRED)
ccEEcccccccccccccccccccEEEEEcccccccHHHHHHHHHHHcccEEEEEEcHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEcccccccccccccEEEEEEEccccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEHHccccccccccccHcccccEEEEcccccccEHHHHHHHHHHHHcccEEHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEcccccccccccccEEEEEEEccccHHHHHHHHHHHccccHHcc
Coil and Loop (DISEMBL)
MEVITEGvnninisdasaaskknriqvsntkkplFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVdireetggrpvqKAKIEILLGKSEKFDELMAAAEEEAINNEEQS
Flexible Loop (DISEMBL)
mevitegvnninisdasaaskknriqvsntkkpLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILknnglavekkittstvdireetggrpvqkakieILLGKSEKFDELMAAAEEEAINNEEQS
Low Complexity Region (SEG)
MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMaaaeeeainneeQS
Disordered region (IsUnstruct)
*****************************TKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIR***********KIEILL************************
Disordered Region (DISOPRED)
********************************PLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITT*****************KIEILLGKSEKF******************
Disordered Region (DISEMBL)
MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAEE*********
Disordered Region (DISPRO)
****TEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAE**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAEEEAINNEEQS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
O22969	130	Uncharacterized protein A	yes	no	0.976	0.976	0.775	2e-50

>sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1

 Score =  197 bits (500), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/129 (77%), Positives = 112/129 (86%), Gaps = 2/129 (1%)

Query: 1   MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 60
           ME IT+GVNN+N+  A+ + KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAI
Sbjct: 1   MEEITDGVNNMNL--ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAI 58

Query: 61  ATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAE 120
           ATVVT+ EILKNNG AVEKKI TSTVDI+++  GRPVQKAKIEI L KSEKFDELMAAA 
Sbjct: 59  ATVVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAAN 118

Query: 121 EEAINNEEQ 129
           EE  + E Q
Sbjct: 119 EEKEDAEAQ 127

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
255548958	128	conserved hypothetical protein [Ricinus	0.984	1.0	0.861	4e-57
224089211	136	predicted protein [Populus trichocarpa]	0.892	0.852	0.884	5e-52
224141887	133	predicted protein [Populus trichocarpa]	0.892	0.872	0.889	9e-52
255566979	130	conserved hypothetical protein [Ricinus	0.984	0.984	0.803	1e-51
225430245	130	PREDICTED: uncharacterized protein At2g3	0.923	0.923	0.844	2e-51
118484649	133	unknown [Populus trichocarpa]	0.892	0.872	0.881	5e-51
351724075	144	uncharacterized protein LOC100305539 [Gl	0.869	0.784	0.870	9e-51
351721077	133	uncharacterized protein LOC100527358 [Gl	0.992	0.969	0.804	9e-51
449443097	131	PREDICTED: uncharacterized protein At2g3	0.923	0.916	0.827	6e-50
351723721	131	uncharacterized protein LOC100527472 [Gl	0.976	0.969	0.796	9e-50

>gi|255548958|ref|XP_002515535.1| conserved hypothetical protein [Ricinus communis] gi|223545479|gb|EEF46984.1| conserved hypothetical protein [Ricinus communis]

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 112/130 (86%), Positives = 122/130 (93%), Gaps = 2/130 (1%)

Query: 1   MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 60
           ME +TEGVNN+NI+DAS  +KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI
Sbjct: 1   MEAVTEGVNNMNINDAS--NKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 58

Query: 61  ATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAE 120
           ATVVTIAEILKNNGLA+EKKI TSTVD+RE+TGGRPV KAKIEILLGK+EKFDELMAAA 
Sbjct: 59  ATVVTIAEILKNNGLAIEKKIMTSTVDMREDTGGRPVPKAKIEILLGKTEKFDELMAAAT 118

Query: 121 EEAINNEEQS 130
           EE  ++EEQS
Sbjct: 119 EEGTDSEEQS 128

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089211|ref|XP_002308658.1| predicted protein [Populus trichocarpa] gi|118487145|gb|ABK95401.1| unknown [Populus trichocarpa] gi|222854634|gb|EEE92181.1| predicted protein [Populus trichocarpa]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 107/121 (88%), Positives = 112/121 (92%), Gaps = 5/121 (4%)

Query: 1   MEVITEGVNNINISDA-----SAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSA 55
           MEVITEGVNN+NI+ A     SA +KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSA
Sbjct: 1   MEVITEGVNNLNIAAAAATTDSANNKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSA 60

Query: 56  LGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDEL 115
           LGMAIATVVTIAEILKNNGLAVEKKI TSTVD+REETGGRPV KAKIEILLGK+EKFDEL
Sbjct: 61  LGMAIATVVTIAEILKNNGLAVEKKIMTSTVDMREETGGRPVPKAKIEILLGKTEKFDEL 120

Query: 116 M 116
           M
Sbjct: 121 M 121

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141887|ref|XP_002324292.1| predicted protein [Populus trichocarpa] gi|222865726|gb|EEF02857.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 105/118 (88%), Positives = 110/118 (93%), Gaps = 2/118 (1%)

Query: 1   MEVITEGVNNINISDA--SAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGM 58
           ME ITEGV N+NI+ A  S  +KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGM
Sbjct: 1   MEGITEGVTNLNITAAADSGNNKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGM 60

Query: 59  AIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELM 116
           AIATVVTIAEILKNNGLAVEKKITTSTVD+REETGGRPV KAKIEILLGK+EKFDELM
Sbjct: 61  AIATVVTIAEILKNNGLAVEKKITTSTVDMREETGGRPVPKAKIEILLGKTEKFDELM 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566979|ref|XP_002524472.1| conserved hypothetical protein [Ricinus communis] gi|223536260|gb|EEF37912.1| conserved hypothetical protein [Ricinus communis]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/132 (80%), Positives = 117/132 (88%), Gaps = 4/132 (3%)

Query: 1   MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 60
           ME ITEGVNNIN+  A    KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI
Sbjct: 1   MEEITEGVNNINL--AGDLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 58

Query: 61  ATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAE 120
           ATVVT+AEILKNNGLA+E+KI TSTVD+++E+ GRPVQKAKIEILLGK+E FDELMAAA 
Sbjct: 59  ATVVTVAEILKNNGLAIERKIMTSTVDMKDESRGRPVQKAKIEILLGKTENFDELMAAAA 118

Query: 121 EEA--INNEEQS 130
           EE   ++ EEQS
Sbjct: 119 EERDIVDGEEQS 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430245|ref|XP_002285046.1| PREDICTED: uncharacterized protein At2g34160 [Vitis vinifera] gi|296082016|emb|CBI21021.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 103/122 (84%), Positives = 113/122 (92%), Gaps = 2/122 (1%)

Query: 1   MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 60
           ME +TEGVN +NISD+S   KKNRIQVSNTKKPLFFYVNLAKR+MQQ+N+VELSALGMAI
Sbjct: 1   MENLTEGVNKLNISDSSL--KKNRIQVSNTKKPLFFYVNLAKRFMQQYNDVELSALGMAI 58

Query: 61  ATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAE 120
           ATVVTIAEILKNNGLAVEK+ITTSTVDIR+E GGRP+QKAKIEILLGK+E FDELMA A 
Sbjct: 59  ATVVTIAEILKNNGLAVEKRITTSTVDIRDEFGGRPLQKAKIEILLGKTENFDELMAVAA 118

Query: 121 EE 122
           EE
Sbjct: 119 EE 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484649|gb|ABK94195.1| unknown [Populus trichocarpa]

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 104/118 (88%), Positives = 109/118 (92%), Gaps = 2/118 (1%)

Query: 1   MEVITEGVNNINISDA--SAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGM 58
           ME ITEGV N+NI+ A  S  +KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGM
Sbjct: 1   MEGITEGVTNLNITAAADSGNNKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGM 60

Query: 59  AIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELM 116
           AIATVVTIAEILKNNGLAVEKKITTSTVD+REETGGRPV KAKIEILLGK+ KFDELM
Sbjct: 61  AIATVVTIAEILKNNGLAVEKKITTSTVDMREETGGRPVPKAKIEILLGKTGKFDELM 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724075|ref|NP_001236789.1| uncharacterized protein LOC100305539 [Glycine max] gi|255625853|gb|ACU13271.1| unknown [Glycine max]

 Score =  204 bits (519), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 101/116 (87%), Positives = 109/116 (93%), Gaps = 3/116 (2%)

Query: 1   MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 60
           ME ITEGVNNINISD+    KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI
Sbjct: 12  MEAITEGVNNINISDSY---KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 68

Query: 61  ATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELM 116
           ATVVT+AEILKNN LA+EKKITTSTVDI++++ GRPVQKAKIEILLGK+EKFDELM
Sbjct: 69  ATVVTVAEILKNNELAIEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTEKFDELM 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721077|ref|NP_001238733.1| uncharacterized protein LOC100527358 [Glycine max] gi|255632167|gb|ACU16443.1| unknown [Glycine max]

 Score =  204 bits (519), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 107/133 (80%), Positives = 117/133 (87%), Gaps = 4/133 (3%)

Query: 1   MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 60
           ME ITEGVNNINI + S + KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAI
Sbjct: 1   MEGITEGVNNINI-NISDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAI 59

Query: 61  ATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAE 120
           ATVVT+AEILKNNGL VEKKITTSTVDI++++ GRPVQKAKIEI+LGK+E FDELMAAA 
Sbjct: 60  ATVVTVAEILKNNGLTVEKKITTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAA 119

Query: 121 EEAINN---EEQS 130
            E   N   EEQS
Sbjct: 120 AEDGENRDVEEQS 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443097|ref|XP_004139317.1| PREDICTED: uncharacterized protein At2g34160-like [Cucumis sativus] gi|449493620|ref|XP_004159379.1| PREDICTED: uncharacterized protein At2g34160-like [Cucumis sativus]

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 101/122 (82%), Positives = 112/122 (91%), Gaps = 2/122 (1%)

Query: 1   MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 60
           ME I EGVN+IN+S  S + KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAI
Sbjct: 1   MEEIVEGVNSINLS--SDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAI 58

Query: 61  ATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAE 120
           ATVVT+AEILKNNGLA+EKKI TSTVDI++++ GRPVQKAKIEILLGK+E FDELMAAA 
Sbjct: 59  ATVVTVAEILKNNGLALEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAA 118

Query: 121 EE 122
           EE
Sbjct: 119 EE 120

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723721|ref|NP_001236521.1| uncharacterized protein LOC100527472 [Glycine max] gi|255632428|gb|ACU16564.1| unknown [Glycine max]

 Score =  201 bits (511), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 106/133 (79%), Positives = 115/133 (86%), Gaps = 6/133 (4%)

Query: 1   MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 60
           ME ITEGVNNINISD+    KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAI
Sbjct: 1   MEDITEGVNNINISDSY---KKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAI 57

Query: 61  ATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAE 120
           ATVVT+AEILKNN LAVEKKI TSTVDI++++ GRPVQKAKIEI+LGK+  FDELMAAA 
Sbjct: 58  ATVVTVAEILKNNRLAVEKKIRTSTVDIKDDSRGRPVQKAKIEIVLGKTANFDELMAAAA 117

Query: 121 EEAINN---EEQS 130
            E   N   EEQS
Sbjct: 118 AEDGENGDVEEQS 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2029949	130	AT1G29250 [Arabidopsis thalian	0.876	0.876	0.810	4.5e-43
TAIR|locus:2055516	130	AT2G34160 [Arabidopsis thalian	0.876	0.876	0.801	5.7e-43
TAIR|locus:2084873	164	DAN1 "D NUCLDUO1-ACTIVATEEIC A	0.738	0.585	0.822	4.9e-37

TAIR|locus:2029949 AT1G29250 [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 94/116 (81%), Positives = 103/116 (88%)

Query:     1 MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 60
             ME ITEGVNN+N+  A    KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAI
Sbjct:     1 MEEITEGVNNMNL--AVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAI 58

Query:    61 ATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELM 116
             ATVVT+AEILKNNG AVEKKI TSTVDI++++ GRPVQKAKIEI L KSEKFDELM
Sbjct:    59 ATVVTVAEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELM 114

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2055516 AT2G34160 [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 93/116 (80%), Positives = 104/116 (89%)

Query:     1 MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 60
             ME IT+GVNN+N+  A+ + KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAI
Sbjct:     1 MEEITDGVNNMNL--ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAI 58

Query:    61 ATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELM 116
             ATVVT+ EILKNNG AVEKKI TSTVDI+++  GRPVQKAKIEI L KSEKFDELM
Sbjct:    59 ATVVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELM 114

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2084873 DAN1 "D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 79/96 (82%), Positives = 89/96 (92%)

Query:    21 KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKK 80
             KKNRIQVSNTKKPLFFYVNLAKRY+QQHNEVELSALGMAI TVVTI+EILKNNGLA EKK
Sbjct:    36 KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLATEKK 95

Query:    81 ITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELM 116
             + TSTV +++ET G+ VQKAKIEI+LGKS+KFD L+
Sbjct:    96 VLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLV 131


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.127   0.326    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      130       118   0.00091  102 3  10 23  0.39    31
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  518 (55 KB)
  Total size of DFA:  123 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.99u 0.14s 16.13t   Elapsed:  00:00:01
  Total cpu time:  15.99u 0.14s 16.13t   Elapsed:  00:00:01
  Start:  Fri May 10 08:48:26 2013   End:  Fri May 10 08:48:27 2013

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

GO:0006302 "double-strand break repair" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22969	Y2416_ARATH	No assigned EC number	0.7751	0.9769	0.9769	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
pfam01918	67	pfam01918, Alba, Alba	5e-08

>gnl|CDD|216785 pfam01918, Alba, Alba

 Score = 46.5 bits (111), Expect = 5e-08
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 23 NRIQVSNTKKPLFFYVNLAKRYMQQ--HNEVELSALGMAIATVVTIAEILKNNGLAVEKK 80
          N I VS+ K P+  YV  A + ++    +EV L  LG AI+  V++AEILK   L    +
Sbjct: 1  NVIYVSS-KSPIMNYVKRALKLLENGGADEVVLKGLGRAISKAVSVAEILKRRFLKGLHQ 59

Query: 81 ITTST 85
          +   T
Sbjct: 60 VNVIT 64

Alba is a novel chromosomal protein that coats archaeal DNA without compacting it. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
COG1581	91	Ssh10b Archaeal DNA-binding protein [Transcription	99.93
TIGR00285	87	DNA-binding protein Alba. This protein appears so	99.92
PRK04015	91	DNA/RNA-binding protein albA; Provisional	99.92
PF01918	70	Alba: Alba; InterPro: IPR002775 Members of this fa	99.53
KOG2567	179	consensus Uncharacterized conserved protein [Funct	99.13
PF12328	144	Rpp20: Rpp20 subunit of nuclear RNase MRP and P; P	98.54
PF04232	86	SpoVS: Stage V sporulation protein S (SpoVS); Inte	85.96

>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]

Probab=99.93  E-value=1.1e-25  Score=159.41  Aligned_cols=85  Identities=36%  Similarity=0.521  Sum_probs=79.4

Q ss_pred             CccEEEEecCCCCcchhHHHHH--HHhccCCEEEEeeccchHHHHHHHHHHHHhCCc--eeEEEEEeeeeEeccCCCCcc
Q 032962           21 KKNRIQVSNTKKPLFFYVNLAK--RYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRP   96 (130)
Q Consensus        21 ~~n~I~Vs~~kkP~~~Yv~lAk--~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~ikkI~T~t~~i~~e~~g~~   96 (130)
                      ++|.|+|+  +||.|||| ||.  +|++|.++|+|+|+|+|||+|||+||++|+||+  +.+++|.++|++++.+ +|+.
T Consensus         3 ~envV~vG--~KPvmNYV-lAvlt~fn~g~~eViiKARGraIskAVDvaeivRnrf~p~v~ik~Iki~se~~~~~-~gr~   78 (91)
T COG1581           3 EENVVLVG--KKPVMNYV-LAVLTQFNEGADEVIIKARGRAISKAVDVAEIVRNRFIPDVQIKDIKIGTEELEGE-DGRT   78 (91)
T ss_pred             CccEEEEc--CcchHHHH-HHHHHHHHcCCCEEEEEecchhhHhhHhHHHHHHHhcCCCceEEEEEecceeeecC-CCce
Confidence            45999999  99999999 999  888999999999999999999999999999999  8999999999999885 5888


Q ss_pred             ceeeeEEEEEeeC
Q 032962           97 VQKAKIEILLGKS  109 (130)
Q Consensus        97 ~~v~kIeI~L~K~  109 (130)
                      +++|.|||+|.|.
T Consensus        79 ~~VS~IeI~L~k~   91 (91)
T COG1581          79 RNVSTIEIVLAKK   91 (91)
T ss_pred             eeEEEEEEEEecC
Confidence            8999999999873

>TIGR00285 DNA-binding protein Alba

Probab=99.92  E-value=7.2e-25  Score=154.97  Aligned_cols=83  Identities=39%  Similarity=0.528  Sum_probs=76.0

Q ss_pred             ccEEEEecCCCCcchhHHHHH--HHhccCCEEEEeeccchHHHHHHHHHHHHhCCc--eeEEEEEeeeeEeccCCCCccc
Q 032962           22 KNRIQVSNTKKPLFFYVNLAK--RYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPV   97 (130)
Q Consensus        22 ~n~I~Vs~~kkP~~~Yv~lAk--~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~ikkI~T~t~~i~~e~~g~~~   97 (130)
                      +|+|+|+  +||.|+|| +|.  +|.+|.++|.|+|||+||++||++||+|++|++  +.+++|.++|+.+.++ .|+.+
T Consensus         1 e~~i~vG--~KPvmnYV-lavlt~fn~g~~eV~iKarG~aIskAVdvaeiik~r~~~~v~v~~I~i~te~~~~~-~G~~~   76 (87)
T TIGR00285         1 ENVVYIG--NKPVMNYV-LAVLTQLNSGADEVIIKARGRAISRAVDVAEIVRNRFIPDIKIKKIKIGTEEIKSE-QGREV   76 (87)
T ss_pred             CCEEEEc--CCcHHHHH-HHHHHHHhCCCCeEEEEEecchhhhHHHHHHHHHHhccCCceEEEEEeccEEeecC-CCcee
Confidence            4899999  99999999 777  677899999999999999999999999999988  5699999999998874 58888


Q ss_pred             eeeeEEEEEee
Q 032962           98 QKAKIEILLGK  108 (130)
Q Consensus        98 ~v~kIeI~L~K  108 (130)
                      ++|+|||+|.|
T Consensus        77 ~VStIEI~l~~   87 (87)
T TIGR00285        77 NVSTIEIVLAK   87 (87)
T ss_pred             eEEEEEEEEeC
Confidence            99999999986

This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.

>PRK04015 DNA/RNA-binding protein albA; Provisional

Probab=99.92  E-value=1.7e-24  Score=154.17  Aligned_cols=87  Identities=36%  Similarity=0.460  Sum_probs=77.6

Q ss_pred             CCccEEEEecCCCCcchhHHHHHHHh-ccCCEEEEeeccchHHHHHHHHHHHHhCCc--eeEEEEEeeeeEeccCCCCcc
Q 032962           20 SKKNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRP   96 (130)
Q Consensus        20 ~~~n~I~Vs~~kkP~~~Yv~lAk~~L-~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~ikkI~T~t~~i~~e~~g~~   96 (130)
                      +.+|+|+|+  +||.|+||..+..+| +|.++|+|||+|+||++||++||+||+|++  +.+++|.++|+.+.++ .|+.
T Consensus         2 ~~en~i~Ig--~kpvmnYV~~~~~~l~~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~v~~I~i~se~i~~~-~g~~   78 (91)
T PRK04015          2 AEENVVLVG--KKPVMNYVLAVLTQFNQGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVEIKEIKIGTEEVTSE-DGRE   78 (91)
T ss_pred             CCCCEEEEc--CCcHHHHHHHHHHHHhCCCCeEEEEEeccccchhhhHHHHHHHhccCCeEEEEEEeccEEeecC-CCcE
Confidence            467999999  679999996666544 599999999999999999999999999988  8999999999998874 5888


Q ss_pred             ceeeeEEEEEeeC
Q 032962           97 VQKAKIEILLGKS  109 (130)
Q Consensus        97 ~~v~kIeI~L~K~  109 (130)
                      +++|+|||+|+|.
T Consensus        79 ~~VS~IEI~l~k~   91 (91)
T PRK04015         79 SNVSTIEIVLEKK   91 (91)
T ss_pred             EEEEEEEEEEecC
Confidence            8999999999984

>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function

Probab=99.53  E-value=4.7e-14  Score=93.55  Aligned_cols=60  Identities=40%  Similarity=0.563  Sum_probs=51.6

Q ss_pred             cEEEEecCCCCcchhHHHHHHHh-----ccCCEEEEeeccchHHHHHHHHHHHHhC---CceeEEEEEe
Q 032962           23 NRIQVSNTKKPLFFYVNLAKRYM-----QQHNEVELSALGMAIATVVTIAEILKNN---GLAVEKKITT   83 (130)
Q Consensus        23 n~I~Vs~~kkP~~~Yv~lAk~~L-----~g~~eV~LsAlG~AIs~AV~vAEiLkrr---~~a~ikkI~T   83 (130)
                      |.|+|+ .++|.++|+..+..+|     .++++|.|+|+|+||++||.+||+||++   ++.++.++..
T Consensus         1 n~I~V~-~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~   68 (70)
T PF01918_consen    1 NEIYVS-SNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITS   68 (70)
T ss_dssp             SEEEE--STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEE
T ss_pred             CEEEEC-CCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEec
Confidence            689999 4579999999999988     7999999999999999999999999999   5677777654

The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....

>KOG2567 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.13  E-value=6.7e-11  Score=92.67  Aligned_cols=91  Identities=27%  Similarity=0.321  Sum_probs=71.0

Q ss_pred             ccCCccEEEEecCCCCcchhHHHHHHHhc--cCCEEEEeeccchHHHHHHHHHHHHhC--CceeEEEEEeeeeEeccC--
Q 032962           18 AASKKNRIQVSNTKKPLFFYVNLAKRYMQ--QHNEVELSALGMAIATVVTIAEILKNN--GLAVEKKITTSTVDIREE--   91 (130)
Q Consensus        18 ~~~~~n~I~Vs~~kkP~~~Yv~lAk~~L~--g~~eV~LsAlG~AIs~AV~vAEiLkrr--~~a~ikkI~T~t~~i~~e--   91 (130)
                      --++.|.++|....|- .||+.+|..+|+  .+..|++||+|+||+++|.+|||||||  ||+++++|.--++.=..+  
T Consensus        14 ~pp~a~emrV~~g~ki-rN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l~~~sv~d~W~p~   92 (179)
T KOG2567|consen   14 LPPDANEMRVKSGSKI-RNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRLRYTSVEDVWEPT   92 (179)
T ss_pred             CCCCcceEEEccCchH-HHHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhceeeeeehhhccccc
Confidence            3478899999966655 599999999997  477799999999999999999999999  788888887544320111  


Q ss_pred             CCC-----ccceeeeEEEEEeeC
Q 032962           92 TGG-----RPVQKAKIEILLGKS  109 (130)
Q Consensus        92 ~~g-----~~~~v~kIeI~L~K~  109 (130)
                      ..|     -.+++|.|-|+|.+.
T Consensus        93 ~eGl~pl~vtRhVp~l~IlLS~d  115 (179)
T KOG2567|consen   93 EEGLEPLEVTRHVPMLHILLSLD  115 (179)
T ss_pred             ccCccceEEeeccceEEEEEecc
Confidence            123     245799999999884

>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B

Probab=98.54  E-value=3.1e-07  Score=70.04  Aligned_cols=67  Identities=22%  Similarity=0.383  Sum_probs=48.6

Q ss_pred             ccEEEEecCCCCcchhHHHHHHHhc---cC------------------------------CEEEEeeccchHHHHHHHHH
Q 032962           22 KNRIQVSNTKKPLFFYVNLAKRYMQ---QH------------------------------NEVELSALGMAIATVVTIAE   68 (130)
Q Consensus        22 ~n~I~Vs~~kkP~~~Yv~lAk~~L~---g~------------------------------~eV~LsAlG~AIs~AV~vAE   68 (130)
                      ++.|+|| ++-|+|.+|.=+..||.   +.                              .+|.|+|||+||.+|+.+|.
T Consensus         3 ~~~iyVs-s~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~   81 (144)
T PF12328_consen    3 PKVIYVS-SKTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLAL   81 (144)
T ss_dssp             TTEEE---SS--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHH
T ss_pred             CcEEEEe-cCCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHH
Confidence            5789999 56698888766666775   11                              68999999999999999999


Q ss_pred             HHHhCCceeEEEEEeeeeEecc
Q 032962           69 ILKNNGLAVEKKITTSTVDIRE   90 (130)
Q Consensus        69 iLkrr~~a~ikkI~T~t~~i~~   90 (130)
                      -++++. .-...|.|+|+.+-|
T Consensus        82 ~Fq~~~-~~~V~V~TgTV~vvD  102 (144)
T PF12328_consen   82 WFQRKK-GYKVEVRTGTVEVVD  102 (144)
T ss_dssp             HHHHTT----EEEEEEEEEEEE
T ss_pred             HHhhcC-CeEEEEEeceEEEEE
Confidence            999885 456678888876555

>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG

Probab=85.96  E-value=2.8  Score=29.73  Aligned_cols=48  Identities=25%  Similarity=0.331  Sum_probs=31.5

Q ss_pred             cEEEEecCCCCcchhHHHHH-HHhccCCEEEEeeccc-hHHHHHHHHHHHHh
Q 032962           23 NRIQVSNTKKPLFFYVNLAK-RYMQQHNEVELSALGM-AIATVVTIAEILKN   72 (130)
Q Consensus        23 n~I~Vs~~kkP~~~Yv~lAk-~~L~g~~eV~LsAlG~-AIs~AV~vAEiLkr   72 (130)
                      +.+.||+..+|. ... =|. ..+...+.|.|.|.|. |++.||...-+-+.
T Consensus         2 e~LKVSs~S~p~-~vA-gAIa~~lre~~~v~lqaiGa~AvnqAvKAIAiAR~   51 (86)
T PF04232_consen    2 EVLKVSSKSNPN-AVA-GAIAGVLREGGKVELQAIGAGAVNQAVKAIAIARG   51 (86)
T ss_dssp             -EEEE-TT--HH-HHH-HHHHHHHHHTSEEEEEE-SHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCHH-HHH-HHHHHHHhcCCcEEEEEECHHHHHHHHHHHHHHHH
Confidence            478999777886 222 222 5666778999999998 89999888776653

SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
1vm0_A	130	X-Ray Structure Of Gene Product From Arabidopsis Th		1e-44

>pdb|1VM0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g34160 Length = 130

Iteration: 1
 Score =  174 bits (442), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/114 (77%), Positives = 98/114 (85%), Gaps = 2/114 (1%)
Query: 2   EVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIA 61
           E IT+GVNN N+  A+ + KKNRIQVSNTKKPLFFYVNLAKRY QQ+N+VELSALG AIA
Sbjct: 2   EEITDGVNNXNL--ATDSQKKNRIQVSNTKKPLFFYVNLAKRYXQQYNDVELSALGXAIA 59
Query: 62  TVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDEL 115
           TVVT+ EILKNNG AVEKKI TS VDI+++  GRPVQKAKIEI L KSEKFDEL
Sbjct: 60  TVVTVTEILKNNGFAVEKKIXTSIVDIKDDARGRPVQKAKIEITLVKSEKFDEL 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
1vm0_A	130	Unknown protein; structural genomics, protein stru	1e-42
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	2e-05
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	9e-05
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	3e-04
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	6e-04

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A Length = 130

 Score =  136 bits (342), Expect = 1e-42
 Identities = 98/128 (76%), Positives = 109/128 (85%), Gaps = 2/128 (1%)

Query: 2   EVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIA 61
           E IT+GVNN+N++  S   KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAIA
Sbjct: 2   EEITDGVNNMNLATDS--QKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIA 59

Query: 62  TVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAEE 121
           TVVT+ EILKNNG AVEKKI TS VDI+++  GRPVQKAKIEI L KSEKFDELMAAA E
Sbjct: 60  TVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANE 119

Query: 122 EAINNEEQ 129
           E  + E Q
Sbjct: 120 EKEDAETQ 127

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1 Length = 87

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 30  TKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKN--NGLAVEKKITTSTVD 87
            KKP+  YV      +  ++EV + A G AI   V +AE+++N        KKI   T  
Sbjct: 8   GKKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDK 67

Query: 88  IREETGGRPVQKAKIEILLGK 108
           ++    GR V  + IEI+L K
Sbjct: 68  VKNP-DGREVNVSTIEIVLAK 87

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A Length = 97

 Score = 38.0 bits (88), Expect = 9e-05
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 17  SAASKKNRIQVSNTKKPLFFYVNLAKRYMQQ-HNEVELSALGMAIATVVTIAEILKNNGL 75
           S+ +      V   KKP+  YV  A   + Q  +E+ + A G AI+  V   EI++N  L
Sbjct: 2   SSGTPTPSNVVLIGKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFL 61

Query: 76  AVEKKITTSTVDIREETG--GRPVQKAKIEILLGK 108
             + +I    V  +  T   GR  + + IEI + K
Sbjct: 62  PDKIEIKEIRVGSQVVTSQDGRQSRVSTIEIAIRK 96

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 91

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 30  TKKPLFFYVNLAKRYMQQ-HNEVELSALGMAIATVVTIAEILKN--NGLAVEKKITTSTV 86
             KP+  YV      M    +EV L A G+AI+  V +AEI++N        + I   T 
Sbjct: 10  GNKPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTE 69

Query: 87  DIREETGGRPVQKAKIEILLGK 108
           +I     G     + IEI L K
Sbjct: 70  EIIGN-EGTATNVSAIEIQLRK 90

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A* Length = 89

 Score = 35.6 bits (82), Expect = 6e-04
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 30  TKKPLFFYVNLAKRYMQQ-HNEVELSALGMAIATVVTIAEILKN--NGLAVEKKITTSTV 86
             KP+  YV      + +  +EV + A G AI+  V +AEI++N        K+I   T 
Sbjct: 9   GNKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTE 68

Query: 87  DIREETGGRPVQKAKIEILLGK 108
           ++  E  GR    + IEI+L K
Sbjct: 69  ELESE-QGRRSNVSTIEIVLAK 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
1vm0_A	130	Unknown protein; structural genomics, protein stru	100.0
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	99.92
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	99.91
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	99.91
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	99.9
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	99.9
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	99.87
3iab_B	140	Ribonucleases P/MRP protein subunit POP7; RNAse P,	98.41

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A

Probab=100.00  E-value=3.4e-43  Score=262.51  Aligned_cols=127  Identities=76%  Similarity=1.004  Sum_probs=91.6

Q ss_pred             hhhhhhccccccccccccCCccEEEEecCCCCcchhHHHHHHHhccCCEEEEeeccchHHHHHHHHHHHHhCCceeEEEE
Q 032962            2 EVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKI   81 (130)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~n~I~Vs~~kkP~~~Yv~lAk~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~a~ikkI   81 (130)
                      |+|++||+|+++.+  ..+++|+|+||++|||.||||++|++||+++++|+|||||+||++||++||+|||||++++++|
T Consensus         2 ~~~~~~~~~~~~~~--~~~~~N~I~Vs~~kkP~~nYV~~a~~~l~g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI   79 (130)
T 1vm0_A            2 EEITDGVNNMNLAT--DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKI   79 (130)
T ss_dssp             -------------------CTTEEECCCTTSCHHHHHHHHHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             hhHhhhhhcccccC--CCCCCCEEEEecCCCCceeHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEE
Confidence            78999999998863  4688999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeeEeccCCCCccceeeeEEEEEeeCcchHHHHHHHHHhhh--cccccC
Q 032962           82 TTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAEEEAI--NNEEQS  130 (130)
Q Consensus        82 ~T~t~~i~~e~~g~~~~v~kIeI~L~K~~~Fd~~~~~~~~~~~--~~~~~~  130 (130)
                      .|+|++++++.+||++++|||||+|+|+|+||++|++++++++  +++||+
T Consensus        80 ~t~t~~i~~~~~~r~v~~skIEI~L~k~~~fd~~~~~~~~~~~~~~~~~~~  130 (130)
T 1vm0_A           80 MTSIVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDAETQVQN  130 (130)
T ss_dssp             EEEEEEEC------CEEEEEEEEEEEECTTHHHHHHHC-------------
T ss_pred             EeeeEEeccCCCCcccccceEEEEEEecCcHHHHHHHhhhhhcccccccCC
Confidence            9999999987678989999999999999999999999999994  677764

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*

Probab=99.92  E-value=1.4e-24  Score=152.21  Aligned_cols=85  Identities=32%  Similarity=0.447  Sum_probs=76.4

Q ss_pred             CccEEEEecCCCCcchhHHHHHHHh-ccCCEEEEeeccchHHHHHHHHHHHHhCCc--eeEEEEEeeeeEeccCCCCccc
Q 032962           21 KKNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPV   97 (130)
Q Consensus        21 ~~n~I~Vs~~kkP~~~Yv~lAk~~L-~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~ikkI~T~t~~i~~e~~g~~~   97 (130)
                      .+|.|+|+  +||.|+||.+|..+| +|+++|.|||+|+||++||++||+||+|++  ..+++|+++|+++.++ .|+.+
T Consensus         2 ~~n~I~V~--~k~v~~yV~~~~~~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~e-~g~~r   78 (89)
T 1nfj_A            2 AEHVVYVG--NKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESE-QGRRS   78 (89)
T ss_dssp             -CEEEECC--SSCHHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCCB-TTBCC
T ss_pred             CCCEEEEc--CCCHHHHHHHHHHHHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEcC-CCcEE
Confidence            47999999  789999998888666 579999999999999999999999999986  5779999999999885 48888


Q ss_pred             eeeeEEEEEee
Q 032962           98 QKAKIEILLGK  108 (130)
Q Consensus        98 ~v~kIeI~L~K  108 (130)
                      ++|.|+|+|.|
T Consensus        79 ~vs~IeI~L~k   89 (89)
T 1nfj_A           79 NVSTIEIVLAK   89 (89)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EeeEEEEEEEC
Confidence            99999999986

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A

Probab=99.91  E-value=2.4e-24  Score=153.29  Aligned_cols=88  Identities=30%  Similarity=0.396  Sum_probs=77.2

Q ss_pred             cCCccEEEEecCCCCcchhHHHHHHHh-ccCCEEEEeeccchHHHHHHHHHHHHhCCce---eEEEEEeeeeEeccCCCC
Q 032962           19 ASKKNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTIAEILKNNGLA---VEKKITTSTVDIREETGG   94 (130)
Q Consensus        19 ~~~~n~I~Vs~~kkP~~~Yv~lAk~~L-~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~a---~ikkI~T~t~~i~~e~~g   94 (130)
                      -+++|.|+|+  +||.|+||.+|..+| +|+++|+|||+|+||++||++||+||+|++.   .+++|+++|+++.++ +|
T Consensus         6 ~~~~n~I~V~--~k~v~~YV~~a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e-~G   82 (97)
T 2bky_A            6 PTPSNVVLIG--KKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ-DG   82 (97)
T ss_dssp             ---CCEEECC--SSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET-TS
T ss_pred             CCCCCEEEEc--CcCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecC-CC
Confidence            3578999999  889999998888666 5799999999999999999999999999874   489999999999885 48


Q ss_pred             ccceeeeEEEEEeeC
Q 032962           95 RPVQKAKIEILLGKS  109 (130)
Q Consensus        95 ~~~~v~kIeI~L~K~  109 (130)
                      +.+++|.|+|+|.|.
T Consensus        83 ~~r~vS~IeI~L~k~   97 (97)
T 2bky_A           83 RQSRVSTIEIAIRKK   97 (97)
T ss_dssp             CEEEEEEEEEEEEEC
T ss_pred             cEEEeeEEEEEEEcC
Confidence            888999999999874

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1

Probab=99.91  E-value=2.8e-24  Score=150.20  Aligned_cols=84  Identities=33%  Similarity=0.476  Sum_probs=69.6

Q ss_pred             ccEEEEecCCCCcchhHHHHHHHhccCCEEEEeeccchHHHHHHHHHHHHhCCc--eeEEEEEeeeeEeccCCCCcccee
Q 032962           22 KNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQK   99 (130)
Q Consensus        22 ~n~I~Vs~~kkP~~~Yv~lAk~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~ikkI~T~t~~i~~e~~g~~~~v   99 (130)
                      +|.|+|+  +||.|+||..|..+|+..++|.|||+|+||++||++||+||+|++  ..+++|+++|+.+.++ +|+.+++
T Consensus         2 ~n~I~V~--~k~v~~YV~~~~~~l~~g~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-~g~~r~v   78 (87)
T 1nh9_A            2 DNVVLIG--KKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-DGREVNV   78 (87)
T ss_dssp             CSEEEEC--SSCHHHHHHHHHHHHHHCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC--------CCCE
T ss_pred             CCEEEEe--CcchHHHHHHHHHHhcCCCEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-CCcEEEe
Confidence            6899999  669999998888666533999999999999999999999999986  5779999999998885 4888899


Q ss_pred             eeEEEEEee
Q 032962          100 AKIEILLGK  108 (130)
Q Consensus       100 ~kIeI~L~K  108 (130)
                      |.|+|+|.|
T Consensus        79 S~IeI~L~k   87 (87)
T 1nh9_A           79 STIEIVLAK   87 (87)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEEC
Confidence            999999986

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.90  E-value=1e-23  Score=149.11  Aligned_cols=85  Identities=32%  Similarity=0.403  Sum_probs=75.9

Q ss_pred             CccEEEEecCCCCcchhHHHHHHHh-ccCCEEEEeeccchHHHHHHHHHHHHhCCc--eeEEEEEeeeeEeccCCCCccc
Q 032962           21 KKNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPV   97 (130)
Q Consensus        21 ~~n~I~Vs~~kkP~~~Yv~lAk~~L-~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~ikkI~T~t~~i~~e~~g~~~   97 (130)
                      ++|.|+|+  +||.|+||..+..+| +|.++|.|+|+|+||++||++||+||+|++  ..+++|+++|+++.++ +|+.+
T Consensus         3 ~~~vv~vg--~Kpv~~YV~~~i~~~n~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~v~v~~I~I~se~~~~e-~G~~r   79 (91)
T 3toe_A            3 EENVVYIG--NKPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTEEIIGN-EGTAT   79 (91)
T ss_dssp             --CCEECC--SSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEEEECT-TSSEE
T ss_pred             ccCEEEEC--CCcHHHHHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEeeeEEeecC-CCcee
Confidence            47899999  999999996666555 689999999999999999999999999988  8999999999998874 58888


Q ss_pred             eeeeEEEEEee
Q 032962           98 QKAKIEILLGK  108 (130)
Q Consensus        98 ~v~kIeI~L~K  108 (130)
                      ++|.|||+|.|
T Consensus        80 ~VS~IeI~L~k   90 (91)
T 3toe_A           80 NVSAIEIQLRK   90 (91)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EeeEEEEEEEC
Confidence            99999999987

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*

Probab=99.90  E-value=1.4e-23  Score=150.57  Aligned_cols=88  Identities=26%  Similarity=0.352  Sum_probs=78.9

Q ss_pred             ccEEEEecCCCCcchhHHHHH-HHhc-cCCEEEEeeccchHHHHHHHHHHHHhCCc--eeEEEEEeeeeEeccCC-CCc-
Q 032962           22 KNRIQVSNTKKPLFFYVNLAK-RYMQ-QHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREET-GGR-   95 (130)
Q Consensus        22 ~n~I~Vs~~kkP~~~Yv~lAk-~~L~-g~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~ikkI~T~t~~i~~e~-~g~-   95 (130)
                      +|.|+|+  +||.|+|+.+|. .+|+ |+++|.|||+|+||++||++||+||||++  ..+++|+++|..+.++. +|+ 
T Consensus         6 ~n~I~V~--~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e~g~~   83 (102)
T 2h9u_A            6 APEVRIG--RKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTPEGQT   83 (102)
T ss_dssp             CCEEECC--SSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECTTSCE
T ss_pred             CCEEEEc--CCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEeccccCCcc
Confidence            6999999  889999999998 7775 79999999999999999999999999997  56699999999988751 466 


Q ss_pred             -cceeeeEEEEEeeCcc
Q 032962           96 -PVQKAKIEILLGKSEK  111 (130)
Q Consensus        96 -~~~v~kIeI~L~K~~~  111 (130)
                       .+++|.|+|+|.|.|+
T Consensus        84 ~~r~vS~IeI~Lsk~~~  100 (102)
T 2h9u_A           84 RTRRVSSIEICLEKAGE  100 (102)
T ss_dssp             EEEEEEEEEEEEEECSS
T ss_pred             ceeEeeeEEEEEEccCC
Confidence             7899999999999885

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A

Probab=99.87  E-value=4.6e-22  Score=139.77  Aligned_cols=83  Identities=17%  Similarity=0.033  Sum_probs=72.2

Q ss_pred             cCCccEEEEecCCCCcchhHHHHH-HHhccCCEEEEeeccchHHHHHHHHHHHHhCCc--eeEEEEEeeeeEeccCCCCc
Q 032962           19 ASKKNRIQVSNTKKPLFFYVNLAK-RYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGR   95 (130)
Q Consensus        19 ~~~~n~I~Vs~~kkP~~~Yv~lAk-~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~ikkI~T~t~~i~~e~~g~   95 (130)
                      +.++|.++|+  +||.|+||..+. +|.+|.++|.|||+|+||++||++||+||+|++  +.+++|+++|+.      |+
T Consensus         3 ~~~~~iv~vg--~kpv~nYV~~~~~~ln~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~i~se~------~~   74 (89)
T 2bky_X            3 EKLNEIVVRK--TKNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV------RD   74 (89)
T ss_dssp             -CCEEEECCT--TSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE------ET
T ss_pred             CCCCCEEEEC--CCCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEEecccc------Cc
Confidence            3788999999  789999996666 455689999999999999999999999999977  799999999885      34


Q ss_pred             cceeeeEEEEEeeC
Q 032962           96 PVQKAKIEILLGKS  109 (130)
Q Consensus        96 ~~~v~kIeI~L~K~  109 (130)
                      .+++|.|+|+|.|.
T Consensus        75 ~r~VS~IeI~L~k~   88 (89)
T 2bky_X           75 RRRISYILLRLKRV   88 (89)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             ceEeeeEEEEEEec
Confidence            45899999999874

>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=98.41  E-value=1e-06  Score=66.27  Aligned_cols=68  Identities=12%  Similarity=0.253  Sum_probs=52.4

Q ss_pred             CccEEEEecCCCCcchhHHHHHHHhc-----cCCEEEEeeccchHHHHHHHHHHHHhCCceeEEEEEeeeeEecc
Q 032962           21 KKNRIQVSNTKKPLFFYVNLAKRYMQ-----QHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIRE   90 (130)
Q Consensus        21 ~~n~I~Vs~~kkP~~~Yv~lAk~~L~-----g~~eV~LsAlG~AIs~AV~vAEiLkrr~~a~ikkI~T~t~~i~~   90 (130)
                      -+|.|+|+ ++-|.+.=+.=..+||.     +..+|.|+|||+||.+|+.+|-.+++++- ..-.|.|+|+.+-|
T Consensus        29 ~~~~iYV~-skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~~-~~V~V~T~TV~vvD  101 (140)
T 3iab_B           29 IHTTIFVK-STTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQKN-KKIEVYTKTIEVLD  101 (140)
T ss_dssp             HTTEEECC-SSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTTC-CCEEEEEEEEEEEE
T ss_pred             cCceEEEe-cCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcCC-EEEEEEeceEEEEE
Confidence            47899999 44475544433337886     58999999999999999999999999863 44568888876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d1vm0a_	99	d.68.6.2 (A:) Hypothetical protein At2g34160 {Thal	3e-38
d1nh9a_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon M	2e-16
d1nfja_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon A	2e-13
d2bkya1	89	d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archae	2e-05
d2bkyx1	86	d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archae	9e-05

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  122 bits (308), Expect = 3e-38
 Identities = 85/99 (85%), Positives = 91/99 (91%)

Query: 21  KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKK 80
           KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAIATVVT+ EILKNNG AVEKK
Sbjct: 1   KKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKK 60

Query: 81  ITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAA 119
           I TS VDI+++  GRPVQKAKIEI L KSEKFDELMAAA
Sbjct: 61  IMTSIVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAA 99

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 67.1 bits (164), Expect = 2e-16
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 30  TKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKN---NGLAVEKKITTSTV 86
            KKP+  YV      +  ++EV + A G AI   V +AE+++N     + ++K    +  
Sbjct: 8   GKKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDK 67

Query: 87  DIREETGGRPVQKAKIEILLGK 108
               +     V  + IEI+L K
Sbjct: 68  VKNPDGREVNV--STIEIVLAK 87

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 59.4 bits (144), Expect = 2e-13
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 30  TKKPLFFYVNLAKRYMQQ-HNEVELSALGMAIATVVTIAEILKN---NGLAVEKKITTST 85
             KP+  YV      + +  +EV + A G AI+  V +AEI++N    G+ V++    + 
Sbjct: 7   GNKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTE 66

Query: 86  VDIREETGGRPVQKAKIEILLGK 108
               E+     V  + IEI+L K
Sbjct: 67  ELESEQGRRSNV--STIEIVLAK 87

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]} Length = 89

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 30  TKKPLFFYVNLAKRYMQQ-HNEVELSALGMAIATVVTIAEILKNNGLAVE---KKITTST 85
            KKP+  YV  A   + Q  +E+ + A G AI+  V   EI++N  L  +   K+I   +
Sbjct: 7   GKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGS 66

Query: 86  VDIREETGGRPVQKAKIEILLGK 108
             +  +  GR  + + IEI + K
Sbjct: 67  QVVTSQ-DGRQSRVSTIEIAIRK 88

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]} Length = 86

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

 Score = 36.6 bits (85), Expect = 9e-05
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 21  KKNRIQVSNTKKPLFFYVNLAKRYMQQ-HNEVELSALGMAIATVVTIAEILKNNGLAVEK 79
           K N I V    K +  +V        Q  +EV L   G  I+  V +   LK+    +  
Sbjct: 1   KLNEIVVR-KTKNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDR---LGD 56

Query: 80  KITTSTVDIREETGGRPVQKAKIEILLGK 108
            +    V    E      + + I + L +
Sbjct: 57  GVQLVNVQTGSE-VRDRRRISYILLRLKR 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1vm0a_	99	Hypothetical protein At2g34160 {Thale cress (Arabi	100.0
d1nh9a_	87	DNA-binding protein AlbA {Archaeon Methanococcus j	99.92
d1nfja_	87	DNA-binding protein AlbA {Archaeon Archaeoglobus f	99.92
d2bkya1	89	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.89
d2bkyx1	86	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.85

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.7e-37  Score=219.11  Aligned_cols=98  Identities=86%  Similarity=1.124  Sum_probs=89.5

Q ss_pred             CccEEEEecCCCCcchhHHHHHHHhccCCEEEEeeccchHHHHHHHHHHHHhCCceeEEEEEeeeeEeccCCCCccceee
Q 032962           21 KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKA  100 (130)
Q Consensus        21 ~~n~I~Vs~~kkP~~~Yv~lAk~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~a~ikkI~T~t~~i~~e~~g~~~~v~  100 (130)
                      ++|.|+||++|||.||||++|+.||+++++|+|||||+||++||++||+|+|||++++++|+|+|.++.++.+|+++++|
T Consensus         1 k~n~i~vs~~KkP~~~YV~~a~~~l~~~~eV~l~a~G~AI~~aV~vaeil~~r~~~~i~~I~t~s~~~~~~~~gr~~~vs   80 (99)
T d1vm0a_           1 KKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQKA   80 (99)
T ss_dssp             CTTEEECCCTTSCHHHHHHHHHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC------CEEEE
T ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEecHHHHHHHHHHHHHHHhcCceEEEEEEeeeEEeecCCCCcccccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999987779999999


Q ss_pred             eEEEEEeeCcchHHHHHH
Q 032962          101 KIEILLGKSEKFDELMAA  118 (130)
Q Consensus       101 kIeI~L~K~~~Fd~~~~~  118 (130)
                      +|||+|.|+|+||++|++
T Consensus        81 ~IEI~L~K~~~F~~~~~~   98 (99)
T d1vm0a_          81 KIEITLVKSEKFDELMAA   98 (99)
T ss_dssp             EEEEEEEECTTHHHHHHH
T ss_pred             eEEEEEeeCccHHHHhhc
Confidence            999999999999999986

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.92  E-value=2.5e-25  Score=154.49  Aligned_cols=84  Identities=33%  Similarity=0.476  Sum_probs=70.4

Q ss_pred             ccEEEEecCCCCcchhHHHHHHHhccCCEEEEeeccchHHHHHHHHHHHHhCCc--eeEEEEEeeeeEeccCCCCcccee
Q 032962           22 KNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQK   99 (130)
Q Consensus        22 ~n~I~Vs~~kkP~~~Yv~lAk~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~ikkI~T~t~~i~~e~~g~~~~v   99 (130)
                      +|.|+|+  +||.|+||..+..+|+..++|+|||||+||++||+|||++|||+.  +.+++|.+++++++++ +|+.+++
T Consensus         2 en~I~Ig--~KP~m~YV~~~~~~~~~~~eV~lKArG~aIsrAVdVaEiik~R~~~~~~i~~i~i~se~~~~~-~g~~r~V   78 (87)
T d1nh9a_           2 DNVVLIG--KKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-DGREVNV   78 (87)
T ss_dssp             CSEEEEC--SSCHHHHHHHHHHHHHHCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC--------CCCE
T ss_pred             CCEEEEc--CCCHHHHHHHHHHHhccCCeEEEEEcchhhhHHHHHHHHHHHhccCCeEEEEEEecceEEecC-CCceeEE
Confidence            6899999  999999997777766656999999999999999999999999855  7999999999988774 4788899


Q ss_pred             eeEEEEEee
Q 032962          100 AKIEILLGK  108 (130)
Q Consensus       100 ~kIeI~L~K  108 (130)
                      |.|+|.|.|
T Consensus        79 S~IeI~L~k   87 (87)
T d1nh9a_          79 STIEIVLAK   87 (87)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEeC
Confidence            999999986

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=4.1e-25  Score=153.27  Aligned_cols=84  Identities=32%  Similarity=0.454  Sum_probs=75.5

Q ss_pred             ccEEEEecCCCCcchhHHHHHHHh-ccCCEEEEeeccchHHHHHHHHHHHHhCCc--eeEEEEEeeeeEeccCCCCccce
Q 032962           22 KNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQ   98 (130)
Q Consensus        22 ~n~I~Vs~~kkP~~~Yv~lAk~~L-~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~ikkI~T~t~~i~~e~~g~~~~   98 (130)
                      +|.|+|+  +||.|+||..+..+| +|.++|+|+|||+||++||+|||+||+|++  ..+++|.+++++++.+ +|+.++
T Consensus         1 en~I~Ig--~Kp~~~YV~~~~~~l~~g~~eV~ikArG~aIs~AVdVaEi~k~r~~~~~~i~~i~i~se~~~~e-~g~~r~   77 (87)
T d1nfja_           1 EHVVYVG--NKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESE-QGRRSN   77 (87)
T ss_dssp             CEEEECC--SSCHHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCCB-TTBCCE
T ss_pred             CCEEEEc--CCcHHHHHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEEccEEEecC-CCceeE
Confidence            6899999  889999998888666 589999999999999999999999999865  6899999999988774 577789


Q ss_pred             eeeEEEEEee
Q 032962           99 KAKIEILLGK  108 (130)
Q Consensus        99 v~kIeI~L~K  108 (130)
                      +|+|+|.|.|
T Consensus        78 VS~IeI~L~K   87 (87)
T d1nfja_          78 VSTIEIVLAK   87 (87)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEeC
Confidence            9999999987

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

Probab=99.89  E-value=1.9e-23  Score=145.45  Aligned_cols=85  Identities=31%  Similarity=0.401  Sum_probs=75.0

Q ss_pred             ccEEEEecCCCCcchhHHHHHHHh-ccCCEEEEeeccchHHHHHHHHHHHHhCCc---eeEEEEEeeeeEeccCCCCccc
Q 032962           22 KNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTIAEILKNNGL---AVEKKITTSTVDIREETGGRPV   97 (130)
Q Consensus        22 ~n~I~Vs~~kkP~~~Yv~lAk~~L-~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~---a~ikkI~T~t~~i~~e~~g~~~   97 (130)
                      .|.|+|+  +||.|+||..+..+| +|.++|.|+|||+||++||+|||++++|++   ..+.+|.+++++++++ +|+.+
T Consensus         1 ~n~I~IG--~Kp~mnYV~a~~~~l~~g~~~V~iKArG~aIskAVdVaEiik~R~l~~~~~i~~i~I~se~~~~~-~G~~r   77 (89)
T d2bkya1           1 SNVVLIG--KKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ-DGRQS   77 (89)
T ss_dssp             CCEEECC--SSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET-TSCEE
T ss_pred             CCEEEEC--CCcHHHHHHHHHHHHhCCCCeEEEEEehhhhHHHHHHHHHHHHhcccCceEEEEEEeccEEeecC-CCcEE
Confidence            4899999  999999996666555 578999999999999999999999999987   5789999999998874 58888


Q ss_pred             eeeeEEEEEeeC
Q 032962           98 QKAKIEILLGKS  109 (130)
Q Consensus        98 ~v~kIeI~L~K~  109 (130)
                      ++|.|+|.|.|.
T Consensus        78 ~VS~IeI~L~kk   89 (89)
T d2bkya1          78 RVSTIEIAIRKK   89 (89)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             EEEEEEEEEEcC
Confidence            999999999983

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

Probab=99.85  E-value=1.7e-21  Score=134.94  Aligned_cols=81  Identities=21%  Similarity=0.080  Sum_probs=69.2

Q ss_pred             ccEEEEecCCCCcchhHHHHHH-HhccCCEEEEeeccchHHHHHHHHHHHHhCCc--eeEEEEEeeeeEeccCCCCccce
Q 032962           22 KNRIQVSNTKKPLFFYVNLAKR-YMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQ   98 (130)
Q Consensus        22 ~n~I~Vs~~kkP~~~Yv~lAk~-~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~ikkI~T~t~~i~~e~~g~~~~   98 (130)
                      .|.|++. .+||.|+||..|.. |.+|.++|.|+|+|+|||+||++||++++|++  +.+++|.++|++      |+.++
T Consensus         2 ~nei~~~-~~kp~~nYV~a~i~~f~~g~~eV~iKArG~aIskAVdVaEiir~R~~~~v~i~~I~i~sE~------~~~r~   74 (86)
T d2bkyx1           2 LNEIVVR-KTKNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV------RDRRR   74 (86)
T ss_dssp             CEEEECC-TTSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE------ETTEE
T ss_pred             CceEEEE-cCCchHHHHHHHHHHHHCCCCEEEEEEechhhHHHHHHHHHHHHhccCCeEEEEEEecccc------CCceE
Confidence            5778887 45799999977764 54799999999999999999999999999955  899999999973      44458


Q ss_pred             eeeEEEEEeeC
Q 032962           99 KAKIEILLGKS  109 (130)
Q Consensus        99 v~kIeI~L~K~  109 (130)
                      +|.|||.|+|.
T Consensus        75 VS~IeI~l~k~   85 (86)
T d2bkyx1          75 ISYILLRLKRV   85 (86)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEec
Confidence            99999999984