Citrus Sinensis ID: 032973

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MATIAGVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNPETDECRTYED
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHcccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccHHcccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccHHHcEEccc
Coil and Loop (DISEMBL)
matiagvnlstpsvfakitdpkskvqpsrslwlnnpsrkrpaqfrtgrmhmqplraapdRISEKVEQSIKSAEeacegdpasgecAAAWDEVEELSAAASHARerkkdsdpleayckdnpetdecrtyed
Flexible Loop (DISEMBL)
matiagvnlstpsvfakitdpkskvqpsrslwlnnpsrkrpaqfrtgrmhmqplraapdrISEKVEQSIKSAeeacegdpaSGECAAAWDEVEELSAAASharerkkdsdpleayckdnpetdecrtyed
Low Complexity Region (SEG)
MATIAGVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNPETDECRTYED
Disordered region (IsUnstruct)
**********************************************************************************************************************************
Disordered Region (DISOPRED)
****A**NLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRM**********************************ECAAAWDEVEE*******************AYCKDNPETDECRTYE*
Disordered Region (DISEMBL)
MATIAGVNLSTPSVFAKI**********RSLWLNNPSRKRPAQFRTGRMHMQPLRA***************************ECAAAWDEVEE****************PLEAYCKDNPE*********
Disordered Region (DISPRO)
MATIAGVNLSTPSVFAKITDPK***QPSRSLWL*****KRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHAR***KDSDPLEAYCKDNPETDECRTYED
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATIAGVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNPETDECRTYED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q9LZP9	131	Calvin cycle protein CP12	yes	no	0.976	0.969	0.567	5e-31
O22914	124	Calvin cycle protein CP12	no	no	0.923	0.967	0.507	1e-25
Q9C9K2	134	Calvin cycle protein CP12	no	no	0.553	0.537	0.513	4e-16
A6Q0K5	107	Calvin cycle protein CP12	N/A	no	0.769	0.934	0.429	4e-15

>sp|Q9LZP9|CP122_ARATH Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/134 (56%), Positives = 96/134 (71%), Gaps = 7/134 (5%)

Query: 1   MATIA-GVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPD 59
           MATIA G+N++T  VF  +T     V  +  + LNN S    ++     M +QP++AAP+
Sbjct: 1   MATIATGLNIATQRVF--VTSENRPVCLAGPVHLNN-SWNLGSRTTNRMMKLQPIKAAPE 57

Query: 60  R-ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK--DSDPLEAYC 116
             IS+ VE+SIK A+E C GDP SGEC AAWDEVEELSAAASHAR++KK   SDPLE YC
Sbjct: 58  GGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYC 117

Query: 117 KDNPETDECRTYED 130
           KDNPET+ECRTY++
Sbjct: 118 KDNPETNECRTYDN 131

Acts as a linker essential in the assembly of a core complex of PRK/GAPDH. Coordinates the reversible inactivation of chloroplast enzymes GAPDH and PRK during darkness in photosynthetic tissues.
Arabidopsis thaliana (taxid: 3702)

>sp|O22914|CP121_ARATH Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana GN=CP12-1 PE=1 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 84/134 (62%), Gaps = 14/134 (10%)

Query: 1   MATIAGVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRM-HMQPLRAAPD 59
           M TIA   L+  +    +      + P R   LN P       ++ G M  M  ++A  +
Sbjct: 1   MTTIAAAGLNVATPRVVVRPVARVLGPVR---LNYP-------WKFGSMKRMVVVKATSE 50

Query: 60  -RISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK--DSDPLEAYC 116
             ISEKVE+SI+ A+E C  DP SGEC AAWDEVEELSAAASHAR++KK   SDPLE YC
Sbjct: 51  GEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYC 110

Query: 117 KDNPETDECRTYED 130
            DNPETDECRTY++
Sbjct: 111 NDNPETDECRTYDN 124

Acts as a linker essential in the assembly of a core complex of PRK/GAPDH. Coordinates the reversible inactivation of chloroplast enzymes GAPDH and PRK during darkness in photosynthetic tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9K2|CP123_ARATH Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana GN=CP12-3 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 2/74 (2%)

Query: 59  DRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK--DSDPLEAYC 116
           +++SE +E+ +K A E CE +  S EC  AWDEVEE+S A +  R + K  + DPLE++C
Sbjct: 61  EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFC 120

Query: 117 KDNPETDECRTYED 130
           ++NPETDECR YED
Sbjct: 121 QENPETDECRIYED 134

Acts as a linker essential in the assembly of a core complex of PRK/GAPDH. Coordinates the reversible inactivation of chloroplast enzymes GAPDH and PRK during darkness in photosynthetic tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii GN=CP12 PE=1 SV=2

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 67/107 (62%), Gaps = 7/107 (6%)

Query: 28  SRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAA 87
           ++S+ ++ P+  RP   R   +     + A D +++KV+ ++K AE+AC     S +CA 
Sbjct: 4   TKSVVISRPA-VRPVSTRRAVVVRASGQPAVD-LNKKVQDAVKEAEDAC-AKGTSADCAV 60

Query: 88  AWDEVEELSAAASHARERKKD----SDPLEAYCKDNPETDECRTYED 130
           AWD VEELSAA SH ++  K     +DPLEA+CKD P+ DECR YED
Sbjct: 61  AWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 107

Acts as a linker essential in the assembly of a core complex of PRK/GAPDH. Coordinates the reversible inactivation of chloroplast enzymes GAPDH and PRK during darkness in photosynthetic tissues.

Chlamydomonas reinhardtii (taxid: 3055)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
224128316	126	predicted protein [Populus trichocarpa]	0.969	1.0	0.7	8e-42
118488973	127	unknown [Populus trichocarpa x Populus d	0.976	1.0	0.7	9e-42
225425676	128	PREDICTED: calvin cycle protein CP12-lik	0.976	0.992	0.702	1e-41
118488076	127	unknown [Populus trichocarpa]	0.969	0.992	0.687	1e-40
255548455	128	conserved hypothetical protein [Ricinus	0.976	0.992	0.671	2e-40
218156192	130	chloroplast protein 12 [Fagus crenata]	0.984	0.984	0.689	4e-40
224068524	127	predicted protein [Populus trichocarpa]	0.969	0.992	0.679	5e-40
449469032	128	PREDICTED: calvin cycle protein CP12-2,	0.984	1.0	0.661	4e-39
356572791	132	PREDICTED: calvin cycle protein CP12-lik	0.976	0.962	0.592	1e-34
356505633	132	PREDICTED: calvin cycle protein CP12-lik	0.984	0.969	0.589	5e-34

>gi|224128316|ref|XP_002320298.1| predicted protein [Populus trichocarpa] gi|222861071|gb|EEE98613.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (442), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 103/130 (79%), Gaps = 4/130 (3%)

Query: 1   MATIAGVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDR 60
           MATIAG+NLSTP V AK TD   K QP   L   N   +R  Q  +GR+ ++P+RAAP+ 
Sbjct: 1   MATIAGLNLSTPRVLAKATD-TPKAQPLIKL---NQQWRRSYQLGSGRVQVRPVRAAPEG 56

Query: 61  ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNP 120
           ISEKVE+SIK AEEAC GD ASGECAAAWDEVEELSAAASHA+++KK SDPLE YCKDNP
Sbjct: 57  ISEKVEKSIKEAEEACSGDAASGECAAAWDEVEELSAAASHAKDKKKGSDPLEEYCKDNP 116

Query: 121 ETDECRTYED 130
           ETDECRTYED
Sbjct: 117 ETDECRTYED 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488973|gb|ABK96294.1| unknown [Populus trichocarpa x Populus deltoides] gi|118488989|gb|ABK96302.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  174 bits (441), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 103/130 (79%), Gaps = 3/130 (2%)

Query: 1   MATIAGVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDR 60
           MATIAG+NLSTP V AK TD   K QP   + LN   R    Q  +GR+ ++P+RAAP+ 
Sbjct: 1   MATIAGLNLSTPRVLAKATD-TPKAQPP--IKLNQQRRSWSYQLGSGRVQVRPVRAAPEG 57

Query: 61  ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNP 120
           ISEKVE+SIK AEEAC GD ASGECAAAWDEVEELSAAASHA+++KK SDPLE YCKDNP
Sbjct: 58  ISEKVEKSIKEAEEACSGDAASGECAAAWDEVEELSAAASHAKDKKKGSDPLEEYCKDNP 117

Query: 121 ETDECRTYED 130
           ETDECRTYED
Sbjct: 118 ETDECRTYED 127

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425676|ref|XP_002275043.1| PREDICTED: calvin cycle protein CP12-like [Vitis vinifera]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/131 (70%), Positives = 107/131 (81%), Gaps = 4/131 (3%)

Query: 1   MATIAGVNLSTPSVFAKITD-PKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPD 59
           MATIAGV+LSTP V A+  D PKS  Q  +S WL+NP  KRP++F  GRM ++P+ AAPD
Sbjct: 1   MATIAGVSLSTPRVLARAADSPKS--QTIQSPWLSNP-WKRPSRFGAGRMCVRPVAAAPD 57

Query: 60  RISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDN 119
            ISEKV +SIK+AEE C  DPASGEC AAWDEVEELSAAASHAR++KK+SDPLE YCKDN
Sbjct: 58  SISEKVVESIKNAEEKCSDDPASGECVAAWDEVEELSAAASHARDKKKESDPLETYCKDN 117

Query: 120 PETDECRTYED 130
           PE +ECRTYED
Sbjct: 118 PEDEECRTYED 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488076|gb|ABK95858.1| unknown [Populus trichocarpa]

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 102/131 (77%), Gaps = 5/131 (3%)

Query: 1   MATIAGVNLSTPSVFAKITD-PKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPD 59
           MATIAG+NLSTP V AK TD PK++      + LN P R+       GRM ++P+RAAPD
Sbjct: 1   MATIAGLNLSTPRVLAKATDKPKAQAL----VKLNQPWRRTYHLGSGGRMQIRPVRAAPD 56

Query: 60  RISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDN 119
            ISEKVE+SIK AE AC  D ASGECAAAWDEVEELSAAASHA+++KK SDPLE YCKDN
Sbjct: 57  SISEKVEKSIKDAEAACSDDAASGECAAAWDEVEELSAAASHAKDKKKGSDPLEEYCKDN 116

Query: 120 PETDECRTYED 130
           PETDECRTYED
Sbjct: 117 PETDECRTYED 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548455|ref|XP_002515284.1| conserved hypothetical protein [Ricinus communis] gi|223545764|gb|EEF47268.1| conserved hypothetical protein [Ricinus communis]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/131 (67%), Positives = 103/131 (78%), Gaps = 4/131 (3%)

Query: 1   MATIAGVNLSTPS-VFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPD 59
           MAT+  +N+STP+ V AK TD   K QP     LNNP ++   Q R+ RM ++P+RAAPD
Sbjct: 1   MATLTSLNISTPARVIAKATD-APKAQPI--FKLNNPWKRAGCQLRSQRMQIKPVRAAPD 57

Query: 60  RISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDN 119
            ISEKVE+SIK A++ACE DPASGEC AAWD VEELSAAASHAR++ KDSDPLE YCKDN
Sbjct: 58  SISEKVEESIKDAKQACEDDPASGECVAAWDTVEELSAAASHARDKAKDSDPLETYCKDN 117

Query: 120 PETDECRTYED 130
           PETDECRTYED
Sbjct: 118 PETDECRTYED 128

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218156192|dbj|BAH03328.1| chloroplast protein 12 [Fagus crenata]

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/132 (68%), Positives = 105/132 (79%), Gaps = 4/132 (3%)

Query: 1   MATIAGVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQF-RTGR-MHMQPLRAAP 58
           MATIAG+NLSTP V AK  D   K Q  +S WL++ S KRP  F   GR M ++P+ AAP
Sbjct: 1   MATIAGLNLSTPRVLAKSAD-SPKAQTIKSPWLSH-SWKRPTLFGYAGRSMQVRPVSAAP 58

Query: 59  DRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKD 118
           ++IS+KV +SIK AEEAC GDPASGEC AAWDEVEELSAAASHAR++KK SDPLE YCKD
Sbjct: 59  EKISDKVAESIKDAEEACAGDPASGECVAAWDEVEELSAAASHARDKKKGSDPLEEYCKD 118

Query: 119 NPETDECRTYED 130
           NPET+ECRTYED
Sbjct: 119 NPETEECRTYED 130

Source: Fagus crenata

Species: Fagus crenata

Genus: Fagus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068524|ref|XP_002302764.1| predicted protein [Populus trichocarpa] gi|222844490|gb|EEE82037.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (426), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 89/131 (67%), Positives = 101/131 (77%), Gaps = 5/131 (3%)

Query: 1   MATIAGVNLSTPSVFAKITD-PKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPD 59
           MA IAG+NLSTP V AK TD PK++      + LN P R+       GRM ++P+RAAPD
Sbjct: 1   MAAIAGLNLSTPRVLAKATDKPKAQAL----VKLNQPWRRTYHLGSGGRMQIRPVRAAPD 56

Query: 60  RISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDN 119
            ISEKVE+SIK AE AC  D ASGECAAAWDEVEELSAAASHA+++KK SDPLE YCKDN
Sbjct: 57  SISEKVEKSIKDAEAACSDDAASGECAAAWDEVEELSAAASHAKDKKKGSDPLEEYCKDN 116

Query: 120 PETDECRTYED 130
           PETDECRTYED
Sbjct: 117 PETDECRTYED 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469032|ref|XP_004152225.1| PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Cucumis sativus] gi|449484218|ref|XP_004156820.1| PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Cucumis sativus]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/130 (66%), Positives = 103/130 (79%), Gaps = 2/130 (1%)

Query: 1   MATIAGVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDR 60
           MATI+GVNLS+P + AK      KVQ     WL   S K+ AQ    R+ + P+ AAPD+
Sbjct: 1   MATISGVNLSSPRIMAKAAK-TPKVQLLNVGWLRC-SWKQSAQLGAIRLRVPPVHAAPDK 58

Query: 61  ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNP 120
           IS+KVE+SIK+AEEAC GDP SGECAAAWDEVEELSAAASHAR+RKK+SDPLE+YCKDNP
Sbjct: 59  ISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLESYCKDNP 118

Query: 121 ETDECRTYED 130
           ET+ECRTY++
Sbjct: 119 ETEECRTYDN 128

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572791|ref|XP_003554549.1| PREDICTED: calvin cycle protein CP12-like [Glycine max]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 102/135 (75%), Gaps = 8/135 (5%)

Query: 1   MATIAGVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRK--RPAQFRTGR-MHMQPLRAA 57
           MAT+ GV+LS P VF    +  +  Q + ++  + P  +  RP   + GR M ++P+RAA
Sbjct: 1   MATMTGVSLSCPRVF---FNASASPQNAHAVKFSLPPSQAVRPGSIKLGRVMRIRPVRAA 57

Query: 58  PDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERK--KDSDPLEAY 115
           P+RISEKVE+SIK+A+EAC GDP SGEC AAWDEVEELSAAASHAR+++  KDSDPLE Y
Sbjct: 58  PERISEKVEESIKNAQEACAGDPTSGECVAAWDEVEELSAAASHARDKQKEKDSDPLENY 117

Query: 116 CKDNPETDECRTYED 130
           CKDNPET EC+T+ED
Sbjct: 118 CKDNPETIECKTFED 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505633|ref|XP_003521594.1| PREDICTED: calvin cycle protein CP12-like [Glycine max]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 101/134 (75%), Gaps = 6/134 (4%)

Query: 1   MATIAGVNLSTPSVFAKIT-DPKSKVQPSRSLWLNNPSRKRPAQFRTGR-MHMQPLRAAP 58
           MAT+ GV+LS+P VF   +  P++      ++ L+   R      R GR M ++P+RAAP
Sbjct: 1   MATMTGVSLSSPRVFFNASPSPQNTYAVKFAVPLSQGMRL--GSVRLGRVMRIRPVRAAP 58

Query: 59  DRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHA--RERKKDSDPLEAYC 116
           +RISEKVE+SIK+A+EAC GDP SGEC AAWDEVEELSAAASHA  ++++KDSDPLE YC
Sbjct: 59  ERISEKVEESIKNAQEACAGDPTSGECVAAWDEVEELSAAASHAKYKQKEKDSDPLETYC 118

Query: 117 KDNPETDECRTYED 130
           KDNPET EC+T+ED
Sbjct: 119 KDNPETIECKTFED 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2096009	131	CP12-2 "CP12 domain-containing	0.976	0.969	0.574	7.7e-32
TAIR|locus:2065220	124	CP12-1 "AT2G47400" [Arabidopsi	0.9	0.943	0.540	2.2e-27
TAIR|locus:2011676	134	CP12-3 "AT1G76560" [Arabidopsi	0.553	0.537	0.513	1.2e-17
UNIPROTKB|A6Q0K5	107	CP12 "Calvin cycle protein CP1	0.769	0.934	0.439	2e-17

TAIR|locus:2096009 CP12-2 "CP12 domain-containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 77/134 (57%), Positives = 97/134 (72%)

Query:     1 MATIA-GVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPD 59
             MATIA G+N++T  VF  +T     V  +  + LNN S    ++     M +QP++AAP+
Sbjct:     1 MATIATGLNIATQRVF--VTSENRPVCLAGPVHLNN-SWNLGSRTTNRMMKLQPIKAAPE 57

Query:    60 R-ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK-D-SDPLEAYC 116
               IS+ VE+SIK A+E C GDP SGEC AAWDEVEELSAAASHAR++KK D SDPLE YC
Sbjct:    58 GGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYC 117

Query:   117 KDNPETDECRTYED 130
             KDNPET+ECRTY++
Sbjct:   118 KDNPETNECRTYDN 131

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=ISS;IDA

GO:0009744 "response to sucrose stimulus" evidence=IEP;RCA

GO:0018316 "peptide cross-linking via L-cystine" evidence=TAS

GO:0019253 "reductive pentose-phosphate cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0071454 "cellular response to anoxia" evidence=IEP

GO:0043234 "protein complex" evidence=IDA

GO:0080153 "negative regulation of reductive pentose-phosphate cycle" evidence=IDA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

TAIR|locus:2065220 CP12-1 "AT2G47400" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 74/137 (54%), Positives = 92/137 (67%)

Query:     1 MATIA--GVNLSTPSVFAKITDPKSKVQ-PSRSLWLNNPSRKRPAQFRTGRM-HMQPLRA 56
             M TIA  G+N++TP V  +   P ++V  P R   LN P       ++ G M  M  ++A
Sbjct:     1 MTTIAAAGLNVATPRVVVR---PVARVLGPVR---LNYP-------WKFGSMKRMVVVKA 47

Query:    57 APD-RISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK--DSDPLE 113
               +  ISEKVE+SI+ A+E C  DP SGEC AAWDEVEELSAAASHAR++KK   SDPLE
Sbjct:    48 TSEGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLE 107

Query:   114 AYCKDNPETDECRTYED 130
              YC DNPETDECRTY++
Sbjct:   108 EYCNDNPETDECRTYDN 124

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=ISS;IDA

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0071454 "cellular response to anoxia" evidence=IEP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0080153 "negative regulation of reductive pentose-phosphate cycle" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2011676 CP12-3 "AT1G76560" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 38/74 (51%), Positives = 53/74 (71%)

Query:    59 DRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK--DSDPLEAYC 116
             +++SE +E+ +K A E CE +  S EC  AWDEVEE+S A +  R + K  + DPLE++C
Sbjct:    61 EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFC 120

Query:   117 KDNPETDECRTYED 130
             ++NPETDECR YED
Sbjct:   121 QENPETDECRIYED 134

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0071454 "cellular response to anoxia" evidence=IEP

GO:0043234 "protein complex" evidence=IDA

GO:0080153 "negative regulation of reductive pentose-phosphate cycle" evidence=IDA

UNIPROTKB|A6Q0K5 CP12 "Calvin cycle protein CP12, chloroplastic" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 47/107 (43%), Positives = 68/107 (63%)

Query:    28 SRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAA 87
             ++S+ ++ P+  RP   R   +     + A D +++KV+ ++K AE+AC     S +CA 
Sbjct:     4 TKSVVISRPA-VRPVSTRRAVVVRASGQPAVD-LNKKVQDAVKEAEDAC-AKGTSADCAV 60

Query:    88 AWDEVEELSAAASHARER-KKD---SDPLEAYCKDNPETDECRTYED 130
             AWD VEELSAA SH ++  K D   +DPLEA+CKD P+ DECR YED
Sbjct:    61 AWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 107


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.124   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      130       130   0.00091  102 3  11 23  0.48    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  145 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.39u 0.12s 17.51t   Elapsed:  00:00:00
  Total cpu time:  17.39u 0.12s 17.51t   Elapsed:  00:00:00
  Start:  Fri May 10 09:02:37 2013   End:  Fri May 10 09:02:37 2013

GO:0005507 "copper ion binding" evidence=IDA

GO:0009507 "chloroplast" evidence=ISS

GO:0016151 "nickel cation binding" evidence=IDA

GO:0043234 "protein complex" evidence=ISS

GO:0080153 "negative regulation of reductive pentose-phosphate cycle" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LZP9	CP122_ARATH	No assigned EC number	0.5671	0.9769	0.9694	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
PLN00204	126	PLN00204, PLN00204, CP12 gene family protein; Prov	6e-58
pfam02672	71	pfam02672, CP12, CP12 domain	1e-30
smart01093	72	smart01093, CP12, CP12 domain	9e-21
PLN02237	442	PLN02237, PLN02237, glyceraldehyde-3-phosphate deh	1e-04

>gnl|CDD|215102 PLN00204, PLN00204, CP12 gene family protein; Provisional

 Score =  175 bits (444), Expect = 6e-58
 Identities = 90/130 (69%), Positives = 103/130 (79%), Gaps = 4/130 (3%)

Query: 1   MATIAGVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDR 60
           MATIAG+NLSTP V A+ TD      P +   LNNP  KR ++  +GRM ++P+RAAP+ 
Sbjct: 1   MATIAGLNLSTPRVLARATDRPKAQGPVK---LNNP-WKRGSRLGSGRMQVRPVRAAPEG 56

Query: 61  ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNP 120
           ISEKVE+SIK AEE C  DPASGEC AAWDEVEELSAAASHAR++KK SDPLE YCKDNP
Sbjct: 57  ISEKVEKSIKEAEETCADDPASGECVAAWDEVEELSAAASHARDKKKGSDPLEEYCKDNP 116

Query: 121 ETDECRTYED 130
           ETDECRTYED
Sbjct: 117 ETDECRTYED 126

Length = 126

>gnl|CDD|202342 pfam02672, CP12, CP12 domain

 Score =  104 bits (261), Expect = 1e-30
 Identities = 44/71 (61%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 61  ISEKVEQSIKSAEEACEGDPA-SGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDN 119
           + E ++++IK A EAC    A S ECAAAWDEVEEL A ASH RE+KKD  PLE YC +N
Sbjct: 1   LDEHIQKAIKEAREACAEGGANSAECAAAWDEVEELQAEASHQREKKKDPTPLELYCDEN 60

Query: 120 PETDECRTYED 130
           PE DECR Y+D
Sbjct: 61  PEADECRVYDD 71

The function of this domain is unknown, it does contain three conserved cysteines and a histidine, that suggests this may be a zinc binding domain (Bateman A pers. observation). This domain is found associated with CBS domains in some proteins pfam00571. Length = 71

>gnl|CDD|198161 smart01093, CP12, CP12 domain

 Score = 79.4 bits (196), Expect = 9e-21
 Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 61  ISEKVEQSIKSAEEACEGDPA-SGECAAAWDEVEELSAAASHARERK-KDSDPLEAYCKD 118
           I E ++++I  A  AC      S +C AAWDEVEEL A ASH  + K KD   LE YC +
Sbjct: 1   IDEHIQKAISEARAACAQYGGDSAKCRAAWDEVEELQAEASHHPDDKHKDPTSLELYCDE 60

Query: 119 NPETDECRTYED 130
           NP+ DECR Y+D
Sbjct: 61  NPDADECRVYDD 72

Length = 72

>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 110 DPLEAYCKDNPETDECRTYE 129
           DPLE +CK NP  +EC+ Y+
Sbjct: 422 DPLEDFCKTNPADEECKVYD 441

Length = 442

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
PLN00204	126	CP12 gene family protein; Provisional	100.0
PF02672	71	CP12: CP12 domain; InterPro: IPR003823 This entry	100.0

>PLN00204 CP12 gene family protein; Provisional

Probab=100.00  E-value=4.9e-56  Score=334.98  Aligned_cols=126  Identities=70%  Similarity=1.092  Sum_probs=121.7

Q ss_pred             CcccccccccccccccccCCCCcccCcccccccCCCCCCCcccccccceeeecCCCCchhHHHHHHHHHHHHHHHccCCC
Q 032973            1 MATIAGVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDP   80 (130)
Q Consensus         1 mati~~~~~s~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~Ie~aI~eAr~iC~~g~   80 (130)
                      ||||+||||||||+|++++++|+.+.++   +||+||++. .++|+|+|.++||+++|++|+++|+++|++||++|++|+
T Consensus         1 mat~~~~~~~~~r~~~~~~~~~~~~~~~---~l~~~~~~~-~~~~~~~~~~~~v~a~~~~L~e~Ie~aI~eArevCa~g~   76 (126)
T PLN00204          1 MATIAGLNLSTPRVLARATDRPKAQGPV---KLNNPWKRG-SRLGSGRMQVRPVRAAPEGISEKVEKSIKEAEETCADDP   76 (126)
T ss_pred             CcceecccccCchhhcccCCCcccccee---eccCccccc-ccccCCceEEEeeecCCccHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999987   999999984 467799999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhccccCCCCChHHHHhhhCCCCccccccCC
Q 032973           81 ASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNPETDECRTYED  130 (130)
Q Consensus        81 ~S~eCaaAWDeVEELqAeasHq~~~~~~ktalE~YCdeNPeA~ECRvYDd  130 (130)
                      +|++|++|||+|||||||++||+++++++|+||+||++|||++|||||||
T Consensus        77 ~S~eCaaAWDeVEELqAeasHqr~~~~~kt~lE~YCdeNPeA~ECRvYDd  126 (126)
T PLN00204         77 ASGECVAAWDEVEELSAAASHARDKKKGSDPLEEYCKDNPETDECRTYED  126 (126)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHccccCCCCChHHHHHHHCCCchhhhccCC
Confidence            99999999999999999999999999999999999999999999999997

>PF02672 CP12: CP12 domain; InterPro: IPR003823 This entry represents an uncharacterised domain in proteins of unknown function

Probab=100.00  E-value=3.1e-35  Score=202.25  Aligned_cols=70  Identities=59%  Similarity=1.060  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHHhccccCCCCChHHHHhhhCCCCccccccCC
Q 032973           61 ISEKVEQSIKSAEEACEG-DPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNPETDECRTYED  130 (130)
Q Consensus        61 L~e~Ie~aI~eAr~iC~~-g~~S~eCaaAWDeVEELqAeasHq~~~~~~ktalE~YCdeNPeA~ECRvYDd  130 (130)
                      |+++|+++|++||++|++ |.+|++|++|||+|||||++++||+.+++++|+||+||++||+++|||||||
T Consensus         1 l~e~Ie~~i~eA~~~c~~~g~~s~ec~~AWdeVEELqa~~~h~~~~~~~~~~lE~yC~~nPea~EcrvYdd   71 (71)
T PF02672_consen    1 LEEKIEKAIEEAREACAEGGANSAECRHAWDEVEELQAEASHQRQEKKDKTPLELYCDENPEADECRVYDD   71 (71)
T ss_dssp             -------------------------------------------------TTCHHHHHHHSTTSTTTTTS--
T ss_pred             ChHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHccccCCCCCHHHHHHHHCCCcHHhhhccC
Confidence            689999999999999997 7999999999999999999999999999999999999999999999999997

This domain is found associated with CBS domains in some proteins IPR000644 from INTERPRO.; PDB: 3B1K_I 3B1J_D 3RVD_N 3QV1_I 2LJ9_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
2lj9_A	99	Partial 3d Structure Of The C-Terminal Part Of The		2e-25
3qv1_G	82	Crystal Structure Of The Binary Complex Of Photosyn		3e-25

>pdb|2LJ9|A Chain A, Partial 3d Structure Of The C-Terminal Part Of The Free Arabidopsis Thaliana Cp12-2 In Its Oxidized Form Length = 99

Iteration: 1
 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 68/84 (80%), Gaps = 7/84 (8%)
Query: 50  HMQPLRAAPDR-ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK- 107
           HM    AAP+  IS+ VE+SIK A+E C GDP SGEC AAWDEVEELSAAASHAR++KK 
Sbjct: 20  HM----AAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKA 75
Query: 108 -DSDPLEAYCKDNPETDECRTYED 130
             SDPLE YCKDNPET+ECRTY++
Sbjct: 76  DGSDPLEEYCKDNPETNECRTYDN 99

>pdb|3QV1|G Chain G, Crystal Structure Of The Binary Complex Of Photosyntetic A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis Thaliana. Length = 82

Iteration: 1
 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 68/84 (80%), Gaps = 7/84 (8%)
Query: 50  HMQPLRAAPDR-ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK- 107
           HM    AAP+  IS+ VE+SIK A+E C GDP SGEC AAWDEVEELSAAASHAR++KK 
Sbjct: 3   HM----AAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKA 58
Query: 108 -DSDPLEAYCKDNPETDECRTYED 130
             SDPLE YCKDNPET+ECRTY++
Sbjct: 59  DGSDPLEEYCKDNPETNECRTYDN 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
2lj9_A	99	CP12 domain-containing protein 2; helix, protein b	2e-23
3qv1_G	82	CP12 protein; rossman fold, calvin cycle, NAD, chl	9e-23

>2lj9_A CP12 domain-containing protein 2; helix, protein binding, intrinsically disordered protein; NMR {Arabidopsis thaliana} Length = 99

 Score = 86.4 bits (213), Expect = 2e-23
 Identities = 54/81 (66%), Positives = 63/81 (77%), Gaps = 2/81 (2%)

Query: 52  QPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDS-- 109
             + A    IS+ VE+SIK A+E C GDP SGEC AAWDEVEELSAAASHAR++KK    
Sbjct: 19  SHMAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGS 78

Query: 110 DPLEAYCKDNPETDECRTYED 130
           DPLE YCKDNPET+ECRTY++
Sbjct: 79  DPLEEYCKDNPETNECRTYDN 99

>3qv1_G CP12 protein; rossman fold, calvin cycle, NAD, chloroplast, oxidoreductase binding complex; HET: NAD; 2.00A {Arabidopsis thaliana} PDB: 3rvd_I* Length = 82

 Score = 84.1 bits (207), Expect = 9e-23
 Identities = 55/80 (68%), Positives = 64/80 (80%), Gaps = 2/80 (2%)

Query: 53  PLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK--DSD 110
            + A    IS+ VE+SIK A+E C GDP SGEC AAWDEVEELSAAASHAR++KK   SD
Sbjct: 3   HMAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSD 62

Query: 111 PLEAYCKDNPETDECRTYED 130
           PLE YCKDNPET+ECRTY++
Sbjct: 63  PLEEYCKDNPETNECRTYDN 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
2lj9_A	99	CP12 domain-containing protein 2; helix, protein b	100.0
3qv1_G	82	CP12 protein; rossman fold, calvin cycle, NAD, chl	100.0
3b1j_C	26	CP12; alpha/beta fold, oxidoreductase-protein bind	99.37

>2lj9_A CP12 domain-containing protein 2; helix, protein binding, intrinsically disordered protein; NMR {Arabidopsis thaliana}

Probab=100.00  E-value=1.6e-37  Score=225.48  Aligned_cols=86  Identities=67%  Similarity=1.102  Sum_probs=21.6

Q ss_pred             cccceeeecCCCCch-hHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHhccccCCC--CChHHHHhhhCCC
Q 032973           45 RTGRMHMQPLRAAPD-RISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKD--SDPLEAYCKDNPE  121 (130)
Q Consensus        45 ~~~~~~~~~~~~~~~-~L~e~Ie~aI~eAr~iC~~g~~S~eCaaAWDeVEELqAeasHq~~~~~~--ktalE~YCdeNPe  121 (130)
                      .+|++...++++++. +|+++|+++|++||++|++|++|++|++|||+||||||+++||+.++++  +|+||+||++|||
T Consensus        11 ~~~~~~~~~~~~p~~~~L~e~Ie~ai~eAr~~Ca~g~~S~eCa~AWd~VEELqAeashqr~~~~~~~~t~lE~yCdeNPe   90 (99)
T 2lj9_A           11 SSGLVPRGSHMAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDNPE   90 (99)
T ss_dssp             -------------------------------------------------------------------CCHHHHHHHHCTT
T ss_pred             ccCccCccccCCCchHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhChhccccCCCChHHHHHHHCCC
Confidence            456666666666555 6999999999999999999999999999999999999999999999887  9999999999999


Q ss_pred             CccccccCC
Q 032973          122 TDECRTYED  130 (130)
Q Consensus       122 A~ECRvYDd  130 (130)
                      ++|||||||
T Consensus        91 a~ECrvYDd   99 (99)
T 2lj9_A           91 TNECRTYDN   99 (99)
T ss_dssp             TTSTTTSCC
T ss_pred             chHHhhccC
Confidence            999999997

>3qv1_G CP12 protein; rossman fold, calvin cycle, NAD, chloroplast, oxidoreductase binding complex; HET: NAD; 2.00A {Arabidopsis thaliana} PDB: 3rvd_I*

Probab=100.00  E-value=9.9e-37  Score=215.00  Aligned_cols=74  Identities=76%  Similarity=1.270  Sum_probs=20.7

Q ss_pred             Cch-hHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHhccccCC--CCChHHHHhhhCCCCccccccCC
Q 032973           57 APD-RISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK--DSDPLEAYCKDNPETDECRTYED  130 (130)
Q Consensus        57 ~~~-~L~e~Ie~aI~eAr~iC~~g~~S~eCaaAWDeVEELqAeasHq~~~~~--~ktalE~YCdeNPeA~ECRvYDd  130 (130)
                      +|+ +|+++|+++|++||++|++|.+|++|++|||+|||||||++|||.+++  ++|+||+||++||+++|||||||
T Consensus         6 ~~~~~l~e~Ie~~I~~Ar~ic~~~~~S~eCa~AWdeVEELqaeash~~~~~~a~~~t~lE~yC~~nPea~ECr~Ydd   82 (82)
T 3qv1_G            6 APEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDNPETNECRTYDN   82 (82)
T ss_dssp             --------------------------------------------------------CHHHHHHHHCTTSTTTCCCCC
T ss_pred             CcchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHcccccccCCCChHHHHHHHCCCchHhhhcCC
Confidence            444 499999999999999999999999999999999999999999999998  89999999999999999999997

>3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C*

Probab=99.37  E-value=1.6e-13  Score=78.55  Aligned_cols=24  Identities=33%  Similarity=0.858  Sum_probs=21.4

Q ss_pred             CCCChHHHHhhhCCCCccccccCC
Q 032973          107 KDSDPLEAYCKDNPETDECRTYED  130 (130)
Q Consensus       107 ~~ktalE~YCdeNPeA~ECRvYDd  130 (130)
                      +++++||.||++||+++||||||+
T Consensus         2 ~~~t~lE~yC~enPea~Ecr~yd~   25 (26)
T 3b1j_C            2 ETEPFFGDYCSENPDAAECLIYDD   25 (26)
T ss_dssp             --CTTHHHHHHHCTTSTTTCCCCC
T ss_pred             CcccHHHHHHHHCCCcHHHHhhcc
Confidence            579999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00