Citrus Sinensis ID: 033016

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRRRSVLEDDD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MADPELEAIRQRRMQELMAQqgvgsqqnsEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALvkpekargvEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRRRSVLEDDD
Flexible Loop (DISEMBL)
MADPELEAIRQRRMQELMAQQgvgsqqnseqhQKAQEDAKREADERRQMMLSQILSTEARERLARialvkpekargveDIILRSAQMGQIVEKVSEERLISLLeqintqttkqtkvtiqrrrsvleddd
Low Complexity Region (SEG)
MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEqintqttkqtkvtiqRRRSVLEDDD
Disordered region (IsUnstruct)
**************************************************************LARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQI***********************
Disordered Region (DISOPRED)
MADPELEAIRQ*****************************************QILSTEARERLARIALVKPEKARGVEDIILRSAQ**********ERLI**********************S******
Disordered Region (DISEMBL)
MADPELEAIRQRRMQELM****************************RQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRRRSVLEDDD
Disordered Region (DISPRO)
*****LEAIRQRRMQELMA*************************ERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRRR*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRRRSVLEDDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
P56812	126	Programmed cell death pro	yes	no	0.945	0.968	0.426	3e-20
Q5RBT0	125	Programmed cell death pro	yes	no	0.945	0.976	0.426	4e-20
O14737	125	Programmed cell death pro	yes	no	0.945	0.976	0.426	4e-20
Q2HJH9	125	Programmed cell death pro	yes	no	0.945	0.976	0.418	2e-19
O13929	131	Uncharacterized protein C	yes	no	0.930	0.916	0.451	6e-18
Q54YS0	117	DNA-binding protein DDB_G	yes	no	0.643	0.709	0.534	2e-15
Q8TUY2	117	DNA-binding protein MK161	yes	no	0.906	1.0	0.388	1e-13
Q8U1W7	112	DNA-binding protein PF108	yes	no	0.806	0.928	0.4	5e-12
Q93408	130	Uncharacterized protein D	yes	no	0.860	0.853	0.368	1e-11
O58787	115	DNA-binding protein PH106	yes	no	0.806	0.904	0.391	1e-11

>sp|P56812|PDCD5_MOUSE Programmed cell death protein 5 OS=Mus musculus GN=Pdcd5 PE=1 SV=3

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 85/129 (65%), Gaps = 7/129 (5%)

Query: 1   MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
           MAD ELEA+R++R+ EL A+ G       +    AQ++AK+   E R  +L+Q+L   AR
Sbjct: 1   MADEELEALRKQRLAELQAKHG-------DPGDAAQQEAKQREAEMRNSILAQVLDQSAR 53

Query: 61  ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
            RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE+++ QT K+T V   R
Sbjct: 54  ARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNR 113

Query: 121 RRSVLEDDD 129
           R+ +  D+D
Sbjct: 114 RKVMDSDED 122

May function in the process of apoptosis.
Mus musculus (taxid: 10090)

>sp|Q5RBT0|PDCD5_PONAB Programmed cell death protein 5 OS=Pongo abelii GN=PDCD5 PE=2 SV=3

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 84/129 (65%), Gaps = 7/129 (5%)

Query: 1   MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
           MAD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR
Sbjct: 1   MADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSAR 53

Query: 61  ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
            RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   R
Sbjct: 54  ARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNR 113

Query: 121 RRSVLEDDD 129
           R+ +  D+D
Sbjct: 114 RKVMDSDED 122

May function in the process of apoptosis.

Pongo abelii (taxid: 9601)

>sp|O14737|PDCD5_HUMAN Programmed cell death protein 5 OS=Homo sapiens GN=PDCD5 PE=1 SV=3

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 84/129 (65%), Gaps = 7/129 (5%)

Query: 1   MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
           MAD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR
Sbjct: 1   MADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSAR 53

Query: 61  ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
            RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   R
Sbjct: 54  ARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNR 113

Query: 121 RRSVLEDDD 129
           R+ +  D+D
Sbjct: 114 RKVMDSDED 122

May function in the process of apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q2HJH9|PDCD5_BOVIN Programmed cell death protein 5 OS=Bos taurus GN=PDCD5 PE=2 SV=3

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 84/129 (65%), Gaps = 7/129 (5%)

Query: 1   MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
           MA+ ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR
Sbjct: 1   MAEQELEALRKQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSAR 53

Query: 61  ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
            RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE+++ QT K+T V   R
Sbjct: 54  ARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNR 113

Query: 121 RRSVLEDDD 129
           R+ +  D+D
Sbjct: 114 RKVMDSDED 122

May function in the process of apoptosis.

Bos taurus (taxid: 9913)

>sp|O13929|YF69_SCHPO Uncharacterized protein C23C4.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23C4.09c PE=3 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/133 (45%), Positives = 84/133 (63%), Gaps = 13/133 (9%)

Query: 3   DPELEAIRQRRMQELMAQQG-----VGSQQNSEQHQKAQEDAKREADERRQMMLSQILST 57
           D EL+AIRQ R+ +L A+ G     + S  +S Q Q+  +D      E RQ +LSQIL  
Sbjct: 2   DEELQAIRQARLAQLQAEHGSAPSNIASGPSSNQQQQEVQD------EMRQNLLSQILEH 55

Query: 58  EARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTK--QTK 115
            AR+RL RIALV+ ++A  VE+++LR A+ GQI  K+SE  LI LLE+I+ + +K  +TK
Sbjct: 56  PARDRLRRIALVRKDRAEAVEELLLRMAKTGQISHKISEPELIELLEKISGEVSKRNETK 115

Query: 116 VTIQRRRSVLEDD 128
           + I RR    EDD
Sbjct: 116 IVINRRVQDDEDD 128

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54YS0|Y8111_DICDI DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum GN=DDB_G0278111 PE=3 SV=2

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 66/86 (76%), Gaps = 3/86 (3%)

Query: 44  DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 103
           +ERRQ +L QIL+ +ARERL+RI +VKPEK+R +ED+I+R+AQ GQ+ E+V + +LISLL
Sbjct: 35  NERRQGILIQILTPDARERLSRITIVKPEKSRQIEDLIIRAAQTGQLTERVDDAKLISLL 94

Query: 104 EQINTQTTKQTKVTIQRRRSVLEDDD 129
           EQ++ +T K T    +R    +EDDD
Sbjct: 95  EQLSEKTKKTTITMKRR---TIEDDD 117

Dictyostelium discoideum (taxid: 44689)

>sp|Q8TUY2|Y1619_METKA DNA-binding protein MK1619 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK1619 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 81/121 (66%), Gaps = 4/121 (3%)

Query: 1   MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
           M DPELE IR++++ EL  Q+ +   Q  +  ++ ++ A  EA   R+ ML +IL+ EAR
Sbjct: 1   MTDPELERIRRKKIMEL--QRKLEESQEKKVEEEREKKALEEAQ--RRAMLRRILTPEAR 56

Query: 61  ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
           ERLAR+ L +P+ A+ VE+ +L+ AQ GQ+ EK+ E++L  +L+Q++  T K+ ++  +R
Sbjct: 57  ERLARVRLARPQLAQAVENYLLQLAQTGQLKEKIDEDQLKRILKQVSDATRKEYRIRFKR 116

Query: 121 R 121
           +
Sbjct: 117 K 117

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

>sp|Q8U1W7|Y1087_PYRFU DNA-binding protein PF1087 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1087 PE=3 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 75/115 (65%), Gaps = 11/115 (9%)

Query: 5   ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKRE---ADERRQMMLSQILSTEARE 61
           ++E IR+R++ EL        Q+   + QKAQE+A+R+    + + Q +L +IL+ EARE
Sbjct: 4   DIEEIRRRKLMEL--------QKKYLEQQKAQEEAERQQALIEAQIQAILRRILTPEARE 55

Query: 62  RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKV 116
           RLAR+ LVKPE AR VE I+++  Q GQI EK+ + ++  +L QI  +T ++ ++
Sbjct: 56  RLARVKLVKPELARQVELILVQLYQAGQITEKIDDAKMKKILAQIEARTRREFRI 110

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

>sp|Q93408|YRGK_CAEEL Uncharacterized protein D2005.3 OS=Caenorhabditis elegans GN=D2005.3 PE=3 SV=2

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 73/114 (64%), Gaps = 3/114 (2%)

Query: 18  MAQQGVGS--QQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKAR 75
           M  QG  S  Q + + H+KA++ A+ + +  +  M+SQIL   A +RL+ +A+ KPEKA+
Sbjct: 14  MEAQGASSIPQPSQDAHEKARQQAENQ-ETAKNGMISQILDQAAMQRLSNLAVAKPEKAQ 72

Query: 76  GVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRRRSVLEDDD 129
            VE  ++  A+ GQ+  K++++ L +L+E+++ QT K T V   RRR+ L+ D+
Sbjct: 73  MVEAALINMARRGQLSGKMTDDGLKALMERVSAQTQKATSVKFDRRRNELDSDE 126

Caenorhabditis elegans (taxid: 6239)

>sp|O58787|Y1060_PYRHO DNA-binding protein PH1060 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1060 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 75/115 (65%), Gaps = 11/115 (9%)

Query: 5   ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKRE---ADERRQMMLSQILSTEARE 61
           ++E IR+R++ EL        Q+   + QKAQE+A+R+    + + Q +L +IL+ EARE
Sbjct: 7   DIEEIRRRKLMEL--------QRKYLEQQKAQEEAERQQALIEAQIQAILRKILTPEARE 58

Query: 62  RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKV 116
           RLAR+ LV+PE AR VE I+++  Q GQI E++ + +L  +L QI  +T ++ ++
Sbjct: 59  RLARVKLVRPELARQVELILVQLYQAGQITERIDDAKLKRILAQIEAKTRREFRI 113

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
225463408	128	PREDICTED: programmed cell death protein	0.992	1.0	0.930	7e-59
224116734	128	predicted protein [Populus trichocarpa]	0.992	1.0	0.891	8e-56
194466097	129	double-stranded DNA-binding protein [Ara	0.992	0.992	0.884	1e-54
356512159	129	PREDICTED: programmed cell death protein	0.992	0.992	0.884	3e-54
388493376	128	unknown [Lotus japonicus]	0.992	1.0	0.860	2e-53
388521967	129	unknown [Medicago truncatula]	1.0	1.0	0.813	2e-51
242091261	128	hypothetical protein SORBIDRAFT_09g02728	0.992	1.0	0.837	2e-51
297740643	115	unnamed protein product [Vitis vinifera]	0.891	1.0	0.922	3e-51
351722142	127	uncharacterized protein LOC100305716 [Gl	0.976	0.992	0.861	3e-51
18397268	129	double-stranded DNA-binding-like protein	0.976	0.976	0.833	7e-51

>gi|225463408|ref|XP_002274043.1| PREDICTED: programmed cell death protein 5-like [Vitis vinifera]

 Score =  231 bits (589), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 120/129 (93%), Positives = 125/129 (96%), Gaps = 1/129 (0%)

Query: 1   MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
           MADPELEAIRQRRMQELMAQ GVG+ QNSEQ QKAQEDAKREADERRQMMLSQILS+EAR
Sbjct: 1   MADPELEAIRQRRMQELMAQHGVGNHQNSEQ-QKAQEDAKREADERRQMMLSQILSSEAR 59

Query: 61  ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
           ERLARIALVKPEKARGVED++LR+AQMGQIVEKVSEERLISLLEQIN QTTKQTKVTIQR
Sbjct: 60  ERLARIALVKPEKARGVEDVLLRAAQMGQIVEKVSEERLISLLEQINNQTTKQTKVTIQR 119

Query: 121 RRSVLEDDD 129
           RRSVLEDDD
Sbjct: 120 RRSVLEDDD 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116734|ref|XP_002331864.1| predicted protein [Populus trichocarpa] gi|118487595|gb|ABK95623.1| unknown [Populus trichocarpa] gi|222875382|gb|EEF12513.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 115/129 (89%), Positives = 125/129 (96%), Gaps = 1/129 (0%)

Query: 1   MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
           MADPELEAIRQRRMQELMAQ+G+G+ QNSEQ QKAQEDAK +A+ERRQMMLSQILS+EAR
Sbjct: 1   MADPELEAIRQRRMQELMAQRGMGNPQNSEQ-QKAQEDAKSDAEERRQMMLSQILSSEAR 59

Query: 61  ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
           ERLARIALVKPEKARGVED+ILR+AQMGQIVEKVSEERLIS+LEQIN QTTKQTKVTIQR
Sbjct: 60  ERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLISMLEQINNQTTKQTKVTIQR 119

Query: 121 RRSVLEDDD 129
           RRSVL+DDD
Sbjct: 120 RRSVLDDDD 128

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194466097|gb|ACF74279.1| double-stranded DNA-binding protein [Arachis hypogaea]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 115/130 (88%), Positives = 124/130 (95%), Gaps = 2/130 (1%)

Query: 1   MADPELEAIRQRRMQELMAQQGV-GSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEA 59
           MADPELEAIRQRRMQELMA+ GV G+QQNSEQ QKAQ+DAKREA+ERRQMMLSQILS EA
Sbjct: 1   MADPELEAIRQRRMQELMARHGVQGNQQNSEQ-QKAQDDAKREAEERRQMMLSQILSAEA 59

Query: 60  RERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQ 119
           RERLARIALVKPEKARGVED+ILR+AQMGQI EKVSEE+LI+LLEQIN QTT+QTKVTIQ
Sbjct: 60  RERLARIALVKPEKARGVEDVILRAAQMGQIAEKVSEEKLITLLEQINNQTTRQTKVTIQ 119

Query: 120 RRRSVLEDDD 129
           RRRSVLEDDD
Sbjct: 120 RRRSVLEDDD 129

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512159|ref|XP_003524788.1| PREDICTED: programmed cell death protein 5-like [Glycine max]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 115/130 (88%), Positives = 122/130 (93%), Gaps = 2/130 (1%)

Query: 1   MADPELEAIRQRRMQELMAQQG-VGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEA 59
           MADPELEAIRQRR+QELMA  G VG+QQNSEQ +KAQ+DAKREA+ERRQMMLSQILS EA
Sbjct: 1   MADPELEAIRQRRLQELMAGHGGVGNQQNSEQ-EKAQDDAKREAEERRQMMLSQILSAEA 59

Query: 60  RERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQ 119
           RERLARIALVKPEKARGVED ILR+AQMGQI EKVSEERLISLLEQIN QTT+QTKVTIQ
Sbjct: 60  RERLARIALVKPEKARGVEDFILRAAQMGQITEKVSEERLISLLEQINNQTTRQTKVTIQ 119

Query: 120 RRRSVLEDDD 129
           RRRSVLEDDD
Sbjct: 120 RRRSVLEDDD 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493376|gb|AFK34754.1| unknown [Lotus japonicus]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/129 (86%), Positives = 120/129 (93%), Gaps = 1/129 (0%)

Query: 1   MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
           MADPELEAIRQRRMQELM +QG GSQQ+ EQ + AQEDAKREADERRQMMLSQILS +AR
Sbjct: 1   MADPELEAIRQRRMQELMGRQGAGSQQDPEQ-KAAQEDAKREADERRQMMLSQILSAQAR 59

Query: 61  ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
           ER+ARIALVKPEKARGVED+ILR+AQMGQI EKVSEERLISLLEQIN QT +QTKVTIQR
Sbjct: 60  ERIARIALVKPEKARGVEDVILRAAQMGQITEKVSEERLISLLEQINNQTARQTKVTIQR 119

Query: 121 RRSVLEDDD 129
           RR+VLEDDD
Sbjct: 120 RRNVLEDDD 128

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521967|gb|AFK49045.1| unknown [Medicago truncatula]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/129 (81%), Positives = 115/129 (89%)

Query: 1   MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
           MADPELEAIRQRRMQELM + G    Q + + Q AQEDAKREA+ERRQMMLSQILS EAR
Sbjct: 1   MADPELEAIRQRRMQELMGRHGTAGNQPNPEQQSAQEDAKREAEERRQMMLSQILSAEAR 60

Query: 61  ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
           ERLARIALVKPEKA+GVED+ILR+AQMGQI EKV+EERLI+LLEQIN+QT KQTKVTI R
Sbjct: 61  ERLARIALVKPEKAKGVEDVILRAAQMGQIAEKVTEERLITLLEQINSQTAKQTKVTITR 120

Query: 121 RRSVLEDDD 129
           RRSVLEDDD
Sbjct: 121 RRSVLEDDD 129

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242091261|ref|XP_002441463.1| hypothetical protein SORBIDRAFT_09g027280 [Sorghum bicolor] gi|241946748|gb|EES19893.1| hypothetical protein SORBIDRAFT_09g027280 [Sorghum bicolor]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/129 (83%), Positives = 121/129 (93%), Gaps = 1/129 (0%)

Query: 1   MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
           MADPELEAIRQRRMQELMAQ+G  +QQN+ Q QKAQEDAK+EA+ERRQMML+QILS+EAR
Sbjct: 1   MADPELEAIRQRRMQELMAQRGGANQQNAGQ-QKAQEDAKQEAEERRQMMLAQILSSEAR 59

Query: 61  ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
           ERL+RIALVKP+KARGVED++LR+AQ G I EKVSEERLISLLEQINTQT KQTKVTIQR
Sbjct: 60  ERLSRIALVKPDKARGVEDVLLRAAQTGGISEKVSEERLISLLEQINTQTNKQTKVTIQR 119

Query: 121 RRSVLEDDD 129
           RRSVL+DDD
Sbjct: 120 RRSVLDDDD 128

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740643|emb|CBI30825.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/116 (92%), Positives = 112/116 (96%), Gaps = 1/116 (0%)

Query: 14  MQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEK 73
           MQELMAQ GVG+ QNSEQ QKAQEDAKREADERRQMMLSQILS+EARERLARIALVKPEK
Sbjct: 1   MQELMAQHGVGNHQNSEQ-QKAQEDAKREADERRQMMLSQILSSEARERLARIALVKPEK 59

Query: 74  ARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRRRSVLEDDD 129
           ARGVED++LR+AQMGQIVEKVSEERLISLLEQIN QTTKQTKVTIQRRRSVLEDDD
Sbjct: 60  ARGVEDVLLRAAQMGQIVEKVSEERLISLLEQINNQTTKQTKVTIQRRRSVLEDDD 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722142|ref|NP_001235698.1| uncharacterized protein LOC100305716 [Glycine max] gi|255626399|gb|ACU13544.1| unknown [Glycine max]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 112/130 (86%), Positives = 119/130 (91%), Gaps = 4/130 (3%)

Query: 1   MADPELEAIRQRRMQELMAQQG-VGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEA 59
           MADPELEAIRQRR+QELMA  G VG+QQN EQ +KAQ+DAKREA+ERRQMMLSQILS EA
Sbjct: 1   MADPELEAIRQRRLQELMASHGGVGNQQNPEQ-EKAQDDAKREAEERRQMMLSQILSAEA 59

Query: 60  RERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQ 119
           RERLARIALVKPEKARGVED ILR+AQMGQI EKVSEERLISLLEQIN QTT+QTKVT  
Sbjct: 60  RERLARIALVKPEKARGVEDFILRAAQMGQITEKVSEERLISLLEQINNQTTRQTKVT-- 117

Query: 120 RRRSVLEDDD 129
           RRRSVLEDDD
Sbjct: 118 RRRSVLEDDD 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397268|ref|NP_564336.1| double-stranded DNA-binding-like protein [Arabidopsis thaliana] gi|9972361|gb|AAG10611.1|AC008030_11 Similar to apoptosis related protein 19 [Arabidopsis thaliana] gi|15027975|gb|AAK76518.1| unknown protein [Arabidopsis thaliana] gi|15982858|gb|AAL09776.1| At1g29850/F1N18_19 [Arabidopsis thaliana] gi|20465589|gb|AAM20277.1| putative apoptosis-related protein 19 [Arabidopsis thaliana] gi|332193019|gb|AEE31140.1| double-stranded DNA-binding-like protein [Arabidopsis thaliana]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 110/132 (83%), Positives = 122/132 (92%), Gaps = 6/132 (4%)

Query: 1   MADPELEAIRQRRMQELMAQQGVG---SQQNSEQHQKAQEDAKREADERRQMMLSQILST 57
           MADPELEAIRQRRMQELMA+QG+G   +QQN EQ +K QEDAKREADERRQMMLSQ+LS+
Sbjct: 1   MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQ-EKQQEDAKREADERRQMMLSQVLSS 59

Query: 58  EARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVT 117
           +ARER+ARIALVKPEKARGVED+ILR+AQMGQIVEKVSEERLI+LLEQIN+QTTKQTKVT
Sbjct: 60  QARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVT 119

Query: 118 IQRRRSVLEDDD 129
            QRRR V  DDD
Sbjct: 120 YQRRRGV--DDD 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:2019377	151	AT1G29850 [Arabidopsis thalian	0.798	0.682	0.841	5.3e-40
DICTYBASE|DDB_G0278111	117	DDB_G0278111 "Programmed cell	0.844	0.931	0.469	1.3e-20
ZFIN|ZDB-GENE-040426-980	128	pdcd5 "programmed cell death 5	0.953	0.960	0.410	1.9e-19
UNIPROTKB|O14737	125	PDCD5 "Programmed cell death p	0.945	0.976	0.387	2.8e-18
POMBASE|SPAC23C4.09c	131	SPAC23C4.09c "DNA-binding TFAR	0.976	0.961	0.401	4.6e-18
UNIPROTKB|E1BXI3	126	PDCD5 "Uncharacterized protein	0.945	0.968	0.418	5.8e-18
RGD|1310561	125	Pdcd5 "programmed cell death 5	0.945	0.976	0.387	5.8e-18
UNIPROTKB|I3L5D0	133	PDCD5 "Uncharacterized protein	1.0	0.969	0.376	9.5e-18
FB|FBgn0036580	133	PDCD-5 "PDCD-5" [Drosophila me	0.976	0.947	0.346	2e-17
UNIPROTKB|Q2HJH9	125	PDCD5 "Programmed cell death p	0.945	0.976	0.379	2e-17

TAIR|locus:2019377 AT1G29850 [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 90/107 (84%), Positives = 101/107 (94%)

Query:     1 MADPELEAIRQRRMQELMAQQGVG---SQQNSEQHQKAQEDAKREADERRQMMLSQILST 57
             MADPELEAIRQRRMQELMA+QG+G   +QQN EQ +K QEDAKREADERRQMMLSQ+LS+
Sbjct:     1 MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQ-EKQQEDAKREADERRQMMLSQVLSS 59

Query:    58 EARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 104
             +ARER+ARIALVKPEKARGVED+ILR+AQMGQIVEKVSEERLI+LLE
Sbjct:    60 QARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLE 106

GO:0003677 "DNA binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0278111 DDB_G0278111 "Programmed cell death protein 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 54/115 (46%), Positives = 78/115 (67%)

Query:    15 QELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKA 74
             Q+L   QG G    ++Q Q+AQ   ++EA+ERRQ +L QIL+ +ARERL+RI +VKPEK+
Sbjct:     9 QQLSQMQGQGFDPEAQQRQEAQ---RQEANERRQGILIQILTPDARERLSRITIVKPEKS 65

Query:    75 RGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 129
             R +ED+I+R+AQ GQ+ E+V + +LISLLE               +RR++ EDDD
Sbjct:    66 RQIEDLIIRAAQTGQLTERVDDAKLISLLEQLSEKTKKTTITM--KRRTI-EDDD 117

GO:0003677 "DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040426-980 pdcd5 "programmed cell death 5" [Danio rerio (taxid:7955)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 53/129 (41%), Positives = 81/129 (62%)

Query:     1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
             MAD ELEAIRQ+RM EL A+ G    ++S+Q  + Q++AK+   E R  +L+Q+L   AR
Sbjct:     1 MADEELEAIRQQRMAELQAKHG---DRSSDQ--QGQQEAKQRETEMRNSILAQVLDQSAR 55

Query:    61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXR 120
              RL+ +ALVKP+KA+ VE+ +++ A+ GQ+  K++E  LI +LE               R
Sbjct:    56 ARLSNLALVKPDKAKAVENYLIQMARFGQLGGKITEAGLIEILEKVSQQTEKKTTVKFNR 115

Query:   121 RRSVLEDDD 129
             RR V++ D+
Sbjct:   116 RR-VMDSDE 123

GO:0003677 "DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|O14737 PDCD5 "Programmed cell death protein 5" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 50/129 (38%), Positives = 76/129 (58%)

Query:     1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
             MAD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR
Sbjct:     1 MADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSAR 53

Query:    61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXR 120
              RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+               R
Sbjct:    54 ARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNR 113

Query:   121 RRSVLEDDD 129
             R+ +  D+D
Sbjct:   114 RKVMDSDED 122

GO:0003677 "DNA binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

POMBASE|SPAC23C4.09c SPAC23C4.09c "DNA-binding TFAR19-related protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 51/127 (40%), Positives = 71/127 (55%)

Query:     3 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARER 62
             D EL+AIRQ R+ +L A+ G  +  N      + +  +   DE RQ +LSQIL   AR+R
Sbjct:     2 DEELQAIRQARLAQLQAEHG-SAPSNIASGPSSNQQQQEVQDEMRQNLLSQILEHPARDR 60

Query:    63 LARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRR 122
             L RIALV+ ++A  VE+++LR A+ GQI  K+SE  LI LLE                 R
Sbjct:    61 LRRIALVRKDRAEAVEELLLRMAKTGQISHKISEPELIELLEKISGEVSKRNETKIVINR 120

Query:   123 SVLEDDD 129
              V +D+D
Sbjct:   121 RVQDDED 127

GO:0003690 "double-stranded DNA binding" evidence=ISM

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0033554 "cellular response to stress" evidence=NAS

UNIPROTKB|E1BXI3 PDCD5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 54/129 (41%), Positives = 78/129 (60%)

Query:     1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
             MAD EL A+RQ+R+ EL A+ G  S   S+Q  K     +REA E R  +L+Q+L   AR
Sbjct:     1 MADEELAALRQQRLAELQAKHGDTSADPSQQEAK-----QREA-EIRNTILAQVLDQAAR 54

Query:    61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXR 120
              RL+ +ALVKP+KA+ VE+ +++ A+ GQ+  KVSE+ LI +LE               R
Sbjct:    55 ARLSNLALVKPDKAKAVENYLIQMARFGQLPGKVSEQGLIEILEKVSQQTEKKTTVKFNR 114

Query:   121 RRSVLEDDD 129
             R+ VL+ D+
Sbjct:   115 RK-VLDSDE 122

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|1310561 Pdcd5 "programmed cell death 5" [Rattus norvegicus (taxid:10116)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 50/129 (38%), Positives = 76/129 (58%)

Query:     1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
             MAD ELEA+R++R+ EL A+ G       +    AQ++AK+   E R  +L+Q+L   AR
Sbjct:     1 MADEELEALRKQRLAELQAKHG-------DPGDAAQQEAKQREAEMRNSILAQVLDQSAR 53

Query:    61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXR 120
              RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE               R
Sbjct:    54 ARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNR 113

Query:   121 RRSVLEDDD 129
             R+ +  D+D
Sbjct:   114 RKVMDSDED 122

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

UNIPROTKB|I3L5D0 PDCD5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 49/130 (37%), Positives = 75/130 (57%)

Query:     1 MADPELEAIRQRRMQELMAQQGVGSQQNS-EQHQKAQEDAKREADERRQMMLSQILSTEA 59
             MA+ ELEA+R++R+ EL A+ G        +    AQ++AK    E R  +L+Q+L   A
Sbjct:     1 MAEEELEALRKQRLAELQAKHGNSVFPTQVDPGDAAQQEAKHREAEMRNSILAQVLDQSA 60

Query:    60 RERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXX 119
             R RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE               
Sbjct:    61 RARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFN 120

Query:   120 RRRSVLEDDD 129
             RR+ +  D+D
Sbjct:   121 RRKVMDSDED 130

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

FB|FBgn0036580 PDCD-5 "PDCD-5" [Drosophila melanogaster (taxid:7227)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/130 (34%), Positives = 78/130 (60%)

Query:     1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
             M+D +L+A+R +RM ++ +Q G G   N  + Q+AQ++  R  +E +  +LSQ+L  +AR
Sbjct:     1 MSDSDLDALRAQRMSQMQSQFGGG---NDAEKQQAQQEQMRAQEEMKHSILSQVLDQQAR 57

Query:    61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXX-XXXXXXXXX 119
              RL  + + KPEKA+  E++++R AQMGQ+  K+ + + +S+LE                
Sbjct:    58 ARLNTLKVSKPEKAQMFENMVIRMAQMGQVRGKLDDAQFVSILESVNAQMPQSKSSVKYD 117

Query:   120 RRRSVLEDDD 129
             RRR+ ++ DD
Sbjct:   118 RRRAAIDSDD 127

GO:0006915 "apoptotic process" evidence=NAS

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q2HJH9 PDCD5 "Programmed cell death protein 5" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 49/129 (37%), Positives = 75/129 (58%)

Query:     1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
             MA+ ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR
Sbjct:     1 MAEQELEALRKQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSAR 53

Query:    61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXR 120
              RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE               R
Sbjct:    54 ARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNR 113

Query:   121 RRSVLEDDD 129
             R+ +  D+D
Sbjct:   114 RKVMDSDED 122

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54YS0	Y8111_DICDI	No assigned EC number	0.5348	0.6434	0.7094	yes	no
Q8U1W7	Y1087_PYRFU	No assigned EC number	0.4	0.8062	0.9285	yes	no
Q6L2L3	Y204_PICTO	No assigned EC number	0.3859	0.8294	0.9469	yes	no
Q93408	YRGK_CAEEL	No assigned EC number	0.3684	0.8604	0.8538	yes	no
C3MXG4	Y1752_SULIM	No assigned EC number	0.3425	0.8062	0.8813	yes	no
Q8TIN0	Y4116_METAC	No assigned EC number	0.3389	0.8837	0.9344	yes	no
O14737	PDCD5_HUMAN	No assigned EC number	0.4263	0.9457	0.976	yes	no
O58787	Y1060_PYRHO	No assigned EC number	0.3913	0.8062	0.9043	yes	no
Q46FA5	Y455_METBF	No assigned EC number	0.3559	0.8837	0.9344	yes	no
A9A8D7	Y793_METM6	No assigned EC number	0.3846	0.8759	0.9576	yes	no
Q8TUY2	Y1619_METKA	No assigned EC number	0.3884	0.9069	1.0	yes	no
C3MZB0	Y1870_SULIA	No assigned EC number	0.3425	0.8062	0.8813	yes	no
C5A636	Y1196_THEGJ	No assigned EC number	0.3826	0.8062	0.9285	yes	no
Q05E29	Y1087_AERPE	No assigned EC number	0.325	0.8449	0.9478	yes	no
P56812	PDCD5_MOUSE	No assigned EC number	0.4263	0.9457	0.9682	yes	no
P56813	Y925_PYRAB	No assigned EC number	0.3826	0.8062	0.9043	yes	no
C3NGA4	Y1057_SULIN	No assigned EC number	0.3425	0.8062	0.8813	yes	no
C3N7D0	Y1868_SULIY	No assigned EC number	0.3425	0.8062	0.8813	yes	no
O13929	YF69_SCHPO	No assigned EC number	0.4511	0.9302	0.9160	yes	no
Q980F8	Y352_SULSO	No assigned EC number	0.3425	0.8062	0.8813	yes	no
Q5RBT0	PDCD5_PONAB	No assigned EC number	0.4263	0.9457	0.976	yes	no
C4KII8	Y1799_SULIK	No assigned EC number	0.3425	0.8062	0.8813	yes	no
B6YWX7	Y1102_THEON	No assigned EC number	0.3565	0.8062	0.9285	yes	no
A4G031	Y1518_METM5	No assigned EC number	0.3559	0.8682	0.9491	yes	no
Q5JGN3	Y1278_PYRKO	No assigned EC number	0.3913	0.8062	0.9285	yes	no
C3MR75	Y1892_SULIL	No assigned EC number	0.3425	0.8062	0.8813	yes	no
Q2HJH9	PDCD5_BOVIN	No assigned EC number	0.4186	0.9457	0.976	yes	no
A6UVQ4	Y998_META3	No assigned EC number	0.3559	0.9069	0.9831	yes	no
Q9HM19	Y052_THEAC	No assigned EC number	0.3684	0.8294	0.9304	yes	no
Q6M0W1	Y157_METMP	No assigned EC number	0.3620	0.8914	0.9663	yes	no
A6VIE7	Y1157_METM7	No assigned EC number	0.3620	0.8914	0.9663	yes	no
Q12ZJ1	Y117_METBU	No assigned EC number	0.4070	0.8527	0.9649	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_2040015	SubName- Full=Putative uncharacterized protein; (129 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_kg.C_LG_XVII0009	SubName- Full=Putative uncharacterized protein; (144 aa)	•								0.772
	eugene3.00041113	hypothetical protein (144 aa)	•								0.766
	estExt_Genewise1_v1.C_LG_IV4438	hypothetical protein (125 aa)				•	•				0.630
	fgenesh4_kg.C_LG_X000095	SubName- Full=Putative uncharacterized protein; (245 aa)	•								0.615
	estExt_Genewise1_v1.C_LG_VII2732	hypothetical protein (246 aa)	•								0.600
	estExt_fgenesh4_pm.C_LG_I0760	hypothetical protein (122 aa)	•			•					0.598
	gw1.XVIII.3192.1	hypothetical protein (312 aa)	•								0.595
	gw1.VIII.2798.1	annotation not avaliable (233 aa)	•		•						0.585
	gw1.V.3551.1	hypothetical protein (184 aa)	•								0.567
	estExt_fgenesh4_pg.C_LG_XV0629	hypothetical protein (314 aa)				•					0.532

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	129
pfam01984	105	pfam01984, dsDNA_bind, Double-stranded DNA-binding	2e-24
COG2118	116	COG2118, COG2118, DNA-binding protein [General fun	1e-16
PRK04239	110	PRK04239, PRK04239, hypothetical protein; Provisio	1e-15

>gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain

 Score = 89.1 bits (222), Expect = 2e-24
 Identities = 49/110 (44%), Positives = 75/110 (68%), Gaps = 6/110 (5%)

Query: 9   IRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIAL 68
           IR+ R+ EL  QQG   +Q      + QE+ +++ + ++Q +L QIL+ EARERL+RI L
Sbjct: 1   IRRARLAELQQQQGGLEEQ------QQQEEQQQQEEAQKQAILRQILTPEARERLSRIRL 54

Query: 69  VKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTI 118
           VKPE+A  VE+ +++ AQ G+I  K++EE+L  +LEQI  Q  K+TK+ I
Sbjct: 55  VKPERAEAVENQLIQLAQSGRIRGKITEEQLKEILEQIAPQKRKKTKIKI 104

This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105

>gnl|CDD|225029 COG2118, COG2118, DNA-binding protein [General function prediction only]

 Score = 69.7 bits (171), Expect = 1e-16
 Identities = 50/121 (41%), Positives = 81/121 (66%), Gaps = 5/121 (4%)

Query: 1   MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
           M D ELE IR+R++ EL  Q  +  Q+ +++     E A++E + ++Q +L QIL+ EAR
Sbjct: 1   MDDEELEEIRRRKLAELQRQAKLEEQREAQE-----EQARQEEEAQKQAILRQILTPEAR 55

Query: 61  ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
           ERLAR+ LV+PE A  VE+ +++ AQ G+I  K+ EE L  +LE+I+ QT ++ K+  +R
Sbjct: 56  ERLARVRLVRPELAEAVENQLIQLAQTGRITHKIDEEELKEILERISPQTRREFKIRRRR 115

Query: 121 R 121
           +
Sbjct: 116 K 116

Length = 116

>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional

 Score = 67.2 bits (165), Expect = 1e-15
 Identities = 47/106 (44%), Positives = 70/106 (66%), Gaps = 5/106 (4%)

Query: 4   PELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERL 63
            ELE IR+R+++EL  Q      Q  +Q Q+ QE+A+ +A+ ++Q +L QIL+ EARERL
Sbjct: 1   EELEEIRRRKLEELQKQA-----QEQQQAQEEQEEAQAQAEAQKQAILRQILTPEARERL 55

Query: 64  ARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQ 109
            RI LVKPE A  VE  +++ AQ G+I   + +E+L  +LEQ+  Q
Sbjct: 56  NRIKLVKPEFAEQVEQQLIQLAQSGRIQGPIDDEQLKEILEQLTPQ 101

Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
COG2118	116	DNA-binding protein [General function prediction o	100.0
KOG3431	129	consensus Apoptosis-related protein/predicted DNA-	100.0
PRK04239	110	hypothetical protein; Provisional	100.0
PF01984	107	dsDNA_bind: Double-stranded DNA-binding domain; In	100.0
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	85.43

>COG2118 DNA-binding protein [General function prediction only]

Probab=100.00  E-value=6.7e-41  Score=245.47  Aligned_cols=116  Identities=44%  Similarity=0.683  Sum_probs=102.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHH
Q 033016            1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDI   80 (129)
Q Consensus         1 m~d~eLe~IR~~rl~ELq~~~~~~~~~~~~~~~~~qee~~~~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~   80 (129)
                      |+|+||++||++||+|||++++..     .+...++++++.+.+++|++||++||||+||+||+||+||+||+|++||+|
T Consensus         1 mdd~eLEeIRrrkl~eLQrq~~~~-----~~~~~q~eq~r~~~eaqkqaiLrqiLtpeAreRL~~irLvRPe~AeavE~q   75 (116)
T COG2118           1 MDDEELEEIRRRKLAELQRQAKLE-----EQREAQEEQARQEEEAQKQAILRQILTPEARERLARVRLVRPELAEAVENQ   75 (116)
T ss_pred             CChHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhcCHHHHHHHHHH
Confidence            788899999999999999977311     121234455556668999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCccCCHHHHHHHHHHhhhhccccceeEEeee
Q 033016           81 ILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRR  121 (129)
Q Consensus        81 Liqlaq~G~l~~kitd~~L~~iL~~i~~~~~k~~~I~~~Rr  121 (129)
                      ||+||++|+|++||||++||+||++|+++++++++|+|+||
T Consensus        76 Li~LaqtGri~~~I~e~~lk~IL~~i~~~~rre~kI~~~rk  116 (116)
T COG2118          76 LIQLAQTGRITHKIDEEELKEILERISPQTRREFKIRRRRK  116 (116)
T ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHHhHHhccchheecccC
Confidence            99999999999999999999999999998888999999876

>KOG3431 consensus Apoptosis-related protein/predicted DNA-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.7e-41  Score=248.32  Aligned_cols=123  Identities=50%  Similarity=0.741  Sum_probs=105.9

Q ss_pred             CchHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHH
Q 033016            2 ADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDII   81 (129)
Q Consensus         2 ~d~eLe~IR~~rl~ELq~~~~~~~~~~~~~~~~~qee~~~~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~L   81 (129)
                      +|+||++||++||++|++.+|++++...+   ++..++. +.+++|++||+|||++.||+||+||+|||||||.+||+||
T Consensus         1 ~D~eL~AiR~qRlaqlqa~~G~~~~~~~q---~a~q~~~-~q~e~r~~~lsQvLdqqAr~RLsrlAlvkpekAq~VE~~l   76 (129)
T KOG3431|consen    1 MDPELQAIRAQRLAQLQANSGGANDAAQQ---QANQEQQ-EQEEMRQSMLSQVLDQQARERLSRLALVKPEKAQAVENYL   76 (129)
T ss_pred             CchHHHHHHHHHHHHhhhhcCCCcccccc---chhhhhh-hHHHHHHhHHHHHhhHHHHHHHHhhhhcCHHHHHHHHHHH
Confidence            58899999999999999999865543221   1122222 3789999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCccCCHHHHHHHHHHhhhhc-cccceeEEeeeCCcCCCC
Q 033016           82 LRSAQMGQIVEKVSEERLISLLEQINTQT-TKQTKVTIQRRRSVLEDD  128 (129)
Q Consensus        82 iqlaq~G~l~~kitd~~L~~iL~~i~~~~-~k~~~I~~~Rr~~~~DdD  128 (129)
                      |+||++|+|++||||++||.||++|+.++ .+.|+|+|.||+...|||
T Consensus        77 irma~~gQvs~Kise~~lisiLe~is~Qt~qk~tkV~f~RRr~~~Ddd  124 (129)
T KOG3431|consen   77 IRMAQTGQVSHKISEAELISILEKISAQTNQKNTKVKFDRRRFNDDDD  124 (129)
T ss_pred             HHHHHhCCccccccHHHHHHHHHHHHHhhccccceeeeeccccccCcc
Confidence            99999999999999999999999999998 678999999998544444

>PRK04239 hypothetical protein; Provisional

Probab=100.00  E-value=1e-39  Score=238.22  Aligned_cols=110  Identities=45%  Similarity=0.648  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHHHH
Q 033016            4 PELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILR   83 (129)
Q Consensus         4 ~eLe~IR~~rl~ELq~~~~~~~~~~~~~~~~~qee~~~~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liq   83 (129)
                      +||++||++||+|||+++|+++++     .+++++++++.++++++||++||||+||+||+||+|||||+|++||+|||+
T Consensus         1 ~ELe~IR~~rl~eLq~q~~~~~~~-----~~~~~~~~~~~e~qk~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~liq   75 (110)
T PRK04239          1 EELEEIRRRKLEELQKQAQEQQQA-----QEEQEEAQAQAEAQKQAILRQILTPEARERLNRIKLVKPEFAEQVEQQLIQ   75 (110)
T ss_pred             ChHHHHHHHHHHHHHHHhccCCcc-----hhhHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhhhhcCHHHHHHHHHHHHH
Confidence            489999999999999888743221     233456667789999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCccCCHHHHHHHHHHhhhhccccceeEEeee
Q 033016           84 SAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRR  121 (129)
Q Consensus        84 laq~G~l~~kitd~~L~~iL~~i~~~~~k~~~I~~~Rr  121 (129)
                      |||+|+|++||||++||+||++|+++ ++  .++|+||
T Consensus        76 lAq~G~i~~ki~e~~L~~lL~~v~~~-kr--e~~I~r~  110 (110)
T PRK04239         76 LAQSGRIQGPIDDEQLKEILEQLTPQ-KR--EFKITRR  110 (110)
T ss_pred             HHHcCCCCCCcCHHHHHHHHHHHhhc-cc--CcCcccC
Confidence            99999999999999999999999975 44  4445554

>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota

Probab=100.00  E-value=3.4e-38  Score=228.74  Aligned_cols=107  Identities=50%  Similarity=0.750  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHHHHHHhcC
Q 033016            9 IRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMG   88 (129)
Q Consensus         9 IR~~rl~ELq~~~~~~~~~~~~~~~~~qee~~~~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G   88 (129)
                      ||++||+|||++.++++..     ..++++++++.++++++||++||||+||+||+||+|||||+|.+||+|||+||++|
T Consensus         1 iR~~rl~Elq~~~~~~~~~-----~~~~~~~~~~~ee~~~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G   75 (107)
T PF01984_consen    1 IRRRRLAELQQQQGQQQQK-----QQQQEEQREQQEEQRRAILRQILTPEARERLNRIKLVKPEKARQVENQLIQLAQSG   75 (107)
T ss_dssp             HHHHHHHHCCHTSS-SSST-----CHHCHHCHCCCHHCCHHHHHTCB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CchHHHHHHHhccccccch-----hhhHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcC
Confidence            8999999999887622211     23345566777999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCHHHHHHHHHHhhhhccccceeEEee
Q 033016           89 QIVEKVSEERLISLLEQINTQTTKQTKVTIQR  120 (129)
Q Consensus        89 ~l~~kitd~~L~~iL~~i~~~~~k~~~I~~~R  120 (129)
                      +|++||||++||+||++|+..++++++|+|+|
T Consensus        76 ~l~~kI~d~~L~~iL~~i~~~~~~~~~I~~~R  107 (107)
T PF01984_consen   76 QLRGKIDDEQLKEILEQISEQKQKETKIKIKR  107 (107)
T ss_dssp             SSSS-B-HHHHHHHHHHHCCC-SS-SS-S---
T ss_pred             CCCCCcCHHHHHHHHHHHhhcccCCCeeeeeC
Confidence            99999999999999999998877779999987

The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=85.43  E-value=0.74  Score=35.34  Aligned_cols=17  Identities=41%  Similarity=0.548  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHh
Q 033016            5 ELEAIRQRRMQELMAQQ   21 (129)
Q Consensus         5 eLe~IR~~rl~ELq~~~   21 (129)
                      +|+.+|++||+||++..
T Consensus        39 ~l~~~R~~R~~el~~~~   55 (175)
T cd02987          39 FLQQYREQRMQEMHAKL   55 (175)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            89999999999999764

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	129
2k6b_A	113	Solution Structure Of 1-112 Fragment Of Human Progr		2e-15
2cru_A	118	Solution Structure Of Programmed Cell Death 5 Lengt		1e-12
2jxn_A	127	Solution Structure Of S. Cerevisiae Pdcd5-Like Prot		2e-06
1eij_A	80	Nmr Ensemble Of Methanobacterium Thermoautotrophicu		2e-04

>pdb|2K6B|A Chain A, Solution Structure Of 1-112 Fragment Of Human Programmed Cell Death 5 Protein Length = 113

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 7/103 (6%)
Query: 2   ADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARE 61
           AD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR 
Sbjct: 3   ADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARA 55
Query: 62  RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 104
           RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+
Sbjct: 56  RLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILK 98

>pdb|2CRU|A Chain A, Solution Structure Of Programmed Cell Death 5 Length = 118

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 62/97 (63%), Gaps = 7/97 (7%)
Query: 8   AIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIA 67
            +R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR RL+ +A
Sbjct: 7   GLRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLA 59
Query: 68  LVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 104
           LVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+
Sbjct: 60  LVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILK 96

>pdb|2JXN|A Chain A, Solution Structure Of S. Cerevisiae Pdcd5-Like Protein Ymr074cp Length = 127

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 3   DPELEAIRQRRMQELMAQQG-VGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARE 61
           DPEL+ IR+ R+ +L    G     +NS  +    E++           ++  L  +A E
Sbjct: 2   DPELQCIRECRLAQLKNNSGGTNGDRNSGANNGGGENSAPVG-----AAIANFLEPQALE 56
Query: 62  RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 104
           RL+R+ALV+ ++A+ VE  + +      +  K++E  ++S+L 
Sbjct: 57  RLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILN 99

>pdb|1EIJ|A Chain A, Nmr Ensemble Of Methanobacterium Thermoautotrophicum Protein 1615 Length = 80

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 45  ERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 104
           +++Q+M+ QIL+ EAR RLA + L +P+    +E  +++ AQMG++  K+++E+L  LL+
Sbjct: 8   QKKQIMM-QILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLK 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
2cru_A	118	Programmed cell death protein 5; three helix bundl	2e-21
2hvu_A	116	PDCD5-like protein; YMR074CP, solution structure,	1e-20
2fh0_A	81	Hypothetical 16.0 kDa protein in ABF2-CHL12 interg	3e-20
1eij_A	80	Hypothetical protein MTH1615; beta-helix, structur	9e-16

>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A Length = 118

 Score = 81.4 bits (201), Expect = 2e-21
 Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 7/120 (5%)

Query: 3   DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARER 62
                 +R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR R
Sbjct: 2   SSGSSGLRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARAR 54

Query: 63  LARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRRR 122
           L+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   R  
Sbjct: 55  LSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRSG 114

>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae} Length = 81

 Score = 77.5 bits (191), Expect = 3e-20
 Identities = 21/77 (27%), Positives = 38/77 (49%)

Query: 42  EADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLIS 101
           E        ++  L  +A ERL+R+ALV+ ++A+ VE  + +      +  K++E  ++S
Sbjct: 2   ENSAPVGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVS 61

Query: 102 LLEQINTQTTKQTKVTI 118
           +L  I  Q   Q    I
Sbjct: 62  ILNGIAKQQNSQNNSKI 78

>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1 Length = 80

 Score = 66.3 bits (162), Expect = 9e-16
 Identities = 21/73 (28%), Positives = 49/73 (67%)

Query: 40  KREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERL 99
           +++ + +++ ++ QIL+ EAR RLA + L +P+    +E  +++ AQMG++  K+++E+L
Sbjct: 2   RQQLEMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQL 61

Query: 100 ISLLEQINTQTTK 112
             LL+++  +  +
Sbjct: 62  KELLKRVAGKKRE 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
2jxn_A	127	Uncharacterized protein YMR074C; YMR074CP, PDCD5-l	100.0
2cru_A	118	Programmed cell death protein 5; three helix bundl	100.0
2hvu_A	116	PDCD5-like protein; YMR074CP, solution structure,	100.0
1eij_A	80	Hypothetical protein MTH1615; beta-helix, structur	99.98
2fh0_A	81	Hypothetical 16.0 kDa protein in ABF2-CHL12 interg	99.98
1yyb_A	27	Programmed cell death protein 5; PDCD5(1-26), solu	97.33

>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-44  Score=264.91  Aligned_cols=116  Identities=26%  Similarity=0.448  Sum_probs=95.1

Q ss_pred             CchHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHH
Q 033016            2 ADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDII   81 (129)
Q Consensus         2 ~d~eLe~IR~~rl~ELq~~~~~~~~~~~~~~~~~qee~~~~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~L   81 (129)
                      ||+||++||++||+|||++.|++++...    +++++++.+.++++++||++||||+||+||+||+|||||+|.+||+||
T Consensus         1 MD~ELeaIR~~Rl~ELq~q~~~~~~~~~----~~~~~~~~~~ee~r~~iL~qiL~peAreRL~rI~lVkPekA~~VE~~L   76 (127)
T 2jxn_A            1 MDPELQCIRECRLAQLKNNSGGTNGDRN----SGANNGGGENSAPVGAAIANFLEPQALERLSRVALVRRDRAQAVETYL   76 (127)
T ss_dssp             CCHHHHHHHHHHHHHSSCCSCCCSSCCC----CCSCCSCCSSCCCTTHHHHTTBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCcchh----hhHHHHHHHHHHHHHHHHHHHcCHHHHHHHhcccccCHHHHHHHHHHH
Confidence            5679999999999999988765432211    112233345577899999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCccCCHHHHHHHHHHhhhhccccc--eeEEeee
Q 033016           82 LRSAQMGQIVEKVSEERLISLLEQINTQTTKQT--KVTIQRR  121 (129)
Q Consensus        82 iqlaq~G~l~~kitd~~L~~iL~~i~~~~~k~~--~I~~~Rr  121 (129)
                      |+||++|+|++||||++||+||++|+.++++++  +|+|+|.
T Consensus        77 i~lAq~Gql~~kVsE~~Lk~iL~~vs~~~~kk~~~KI~f~r~  118 (127)
T 2jxn_A           77 KKLIATNNVTHKITEAEIVSILNGIAKQQNSQNNSKIIFEAA  118 (127)
T ss_dssp             HHHHHHSCCCSCBCHHHHHHHHHHHHHHCCSCCCCSCSCC--
T ss_pred             HHHHHcCCCCCCcCHHHHHHHHHHHhhhcccCcceeEeeehh
Confidence            999999999999999999999999998766554  5555544

>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A

Probab=100.00  E-value=4.1e-43  Score=257.72  Aligned_cols=114  Identities=39%  Similarity=0.614  Sum_probs=102.1

Q ss_pred             chHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHHH
Q 033016            3 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIIL   82 (129)
Q Consensus         3 d~eLe~IR~~rl~ELq~~~~~~~~~~~~~~~~~qee~~~~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Li   82 (129)
                      |++|++||++||+|||+++|+  +   +  .+++++++++.+++|++||++||||+||+||+||+|||||+|++||+|||
T Consensus         2 ~~~Le~iR~~rl~eLq~q~g~--~---~--~~~~e~~~~~~ee~r~~iL~qiLtpeAreRL~rI~lVKPEkA~~VE~~LI   74 (118)
T 2cru_A            2 SSGSSGLRRQRLAELQAKHGD--P---G--DAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLI   74 (118)
T ss_dssp             CCSCCCCCCCCCCCCCCCSSC--C---T--HHHHHHHHHHHHHHHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCC--c---c--hhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHH
Confidence            678999999999999987652  1   1  13345666778999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCccCCHHHHHHHHHHhhhhccccceeEEeeeCC
Q 033016           83 RSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRRRS  123 (129)
Q Consensus        83 qlaq~G~l~~kitd~~L~~iL~~i~~~~~k~~~I~~~Rr~~  123 (129)
                      +|||+|+|++||||++||+||++|+.++.++++|+|+||++
T Consensus        75 ~lAq~Gqi~~kItee~Lk~lL~~i~~~~~~~~~i~i~Rr~~  115 (118)
T 2cru_A           75 QMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRSGP  115 (118)
T ss_dssp             HHHHHTCCCSCBCHHHHHHHHHHHTTSCCCCCCCCCCCCCC
T ss_pred             HHHHcCCCCCCcCHHHHHHHHHHHHhccCCCceeEeeecCC
Confidence            99999999999999999999999997777789999999975

>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1

Probab=99.98  E-value=4.1e-34  Score=197.71  Aligned_cols=76  Identities=30%  Similarity=0.572  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHHhhhhccccceeEEeee
Q 033016           43 ADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRR  121 (129)
Q Consensus        43 ~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~i~~~~~k~~~I~~~Rr  121 (129)
                      .+++|+++|++|||||||+||+||+|||||+|++||+|||+|||+|+|++||||++||+||++|++++   .+|+|+||
T Consensus         5 ~ee~r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~i~~~~---~~i~i~Rr   80 (80)
T 1eij_A            5 LEMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRVAGKK---REIKISRK   80 (80)
T ss_dssp             SCCSSHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCCHHHHHHHHHHHSCCC-----------
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHcccc---CceeeccC
Confidence            36789999999999999999999999999999999999999999999999999999999999998653   45899886

>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}

Probab=99.98  E-value=6.7e-34  Score=197.03  Aligned_cols=76  Identities=24%  Similarity=0.458  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHHhh--hhccccceeEEe
Q 033016           44 DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQIN--TQTTKQTKVTIQ  119 (129)
Q Consensus        44 ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~i~--~~~~k~~~I~~~  119 (129)
                      +++|++||++||||+||+||+||+|||||+|++||+|||+|||+|+|++||||++||+||++|+  +++.++++|+|+
T Consensus         4 e~~r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~i~~~~~~~~~tkI~f~   81 (81)
T 2fh0_A            4 SAPVGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNGIAKQQNSQNNSKIIFE   81 (81)
T ss_dssp             CCCSSHHHHTTBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCBCHHHHHHHHHHHHHHCSSCCCSSCCCC
T ss_pred             HHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhHhhccCccceeeeC
Confidence            5678999999999999999999999999999999999999999999999999999999999999  666678899884

>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1

Probab=97.33  E-value=9.5e-05  Score=41.09  Aligned_cols=21  Identities=57%  Similarity=0.893  Sum_probs=18.4

Q ss_pred             CchHHHHHHHHHHHHHHHHhC
Q 033016            2 ADPELEAIRQRRMQELMAQQG   22 (129)
Q Consensus         2 ~d~eLe~IR~~rl~ELq~~~~   22 (129)
                      +|+||++||++||++||++.|
T Consensus         3 ~d~ELeair~~rl~~lq~~~g   23 (27)
T 1yyb_A            3 ADEELEALRRQRLAELQAKHG   23 (27)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCC
T ss_pred             chHHHHHHHHHHHHHHHhccC
Confidence            367999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d2crua1	105	a.5.6.1 (A:8-112) Programmed cell death protein 5	4e-22
d1eija_	72	a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeo	3e-15

>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: Double-stranded DNA-binding domain
family: Double-stranded DNA-binding domain
domain: Programmed cell death protein 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (203), Expect = 4e-22
 Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 7/112 (6%)

Query: 9   IRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIAL 68
           +R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR RL+ +AL
Sbjct: 1   LRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLAL 53

Query: 69  VKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
           VKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   R
Sbjct: 54  VKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNR 105

>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 72

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: Double-stranded DNA-binding domain
family: Double-stranded DNA-binding domain
domain: Hypothetical protein MTH1615
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 63.6 bits (155), Expect = 3e-15
 Identities = 21/70 (30%), Positives = 48/70 (68%)

Query: 40  KREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERL 99
           +++ + +++ ++ QIL+ EAR RLA + L +P+    +E  +++ AQMG++  K+++E+L
Sbjct: 2   RQQLEMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQL 61

Query: 100 ISLLEQINTQ 109
             LL+++  +
Sbjct: 62  KELLKRVAGK 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d2crua1	105	Programmed cell death protein 5 {Human (Homo sapie	100.0
d1eija_	72	Hypothetical protein MTH1615 {Archaeon Methanobact	99.96

>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: Double-stranded DNA-binding domain
family: Double-stranded DNA-binding domain
domain: Programmed cell death protein 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-40  Score=234.29  Aligned_cols=105  Identities=43%  Similarity=0.672  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHHHHHHhcC
Q 033016            9 IRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMG   88 (129)
Q Consensus         9 IR~~rl~ELq~~~~~~~~~~~~~~~~~qee~~~~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G   88 (129)
                      ||++||+|||++.|+++       ..++++++++.+++|++||++||||+||+||+||+|||||+|.+||+|||+||++|
T Consensus         1 IR~~rl~ElQ~q~~~~~-------~~~~~e~~~~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~liqlaq~G   73 (105)
T d2crua1           1 LRRQRLAELQAKHGDPG-------DAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYG   73 (105)
T ss_dssp             CCCCCCCCCCCCSSCCT-------HHHHHHHHHHHHHHHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHhhcCcc-------hhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhhcccCHHHHHHHHHHHHHHHHcC
Confidence            68899999998765321       12344555667889999999999999999999999999999999999999999999


Q ss_pred             CCCccCCHHHHHHHHHHhhhhccccceeEEee
Q 033016           89 QIVEKVSEERLISLLEQINTQTTKQTKVTIQR  120 (129)
Q Consensus        89 ~l~~kitd~~L~~iL~~i~~~~~k~~~I~~~R  120 (129)
                      +|++||||++||.||++|+++++++++|+|+|
T Consensus        74 ~i~~kisd~~Lk~iL~~is~~~~~~~~ik~~R  105 (105)
T d2crua1          74 QLSEKVSEQGLIEILKKVSQQTEKTTTVKFNR  105 (105)
T ss_dssp             CCCSCBCHHHHHHHHHHHTTSCCCCCCCCCCC
T ss_pred             CCCCCcCHHHHHHHHHHHhhcccccCccccCC
Confidence            99999999999999999998888889999987

>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: Double-stranded DNA-binding domain
family: Double-stranded DNA-binding domain
domain: Hypothetical protein MTH1615
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.96  E-value=1.8e-31  Score=179.70  Aligned_cols=68  Identities=31%  Similarity=0.569  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHHhhhh
Q 033016           42 EADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQ  109 (129)
Q Consensus        42 ~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~i~~~  109 (129)
                      +.+++|+++|++|||||||+||+||+|||||+|.+||+|||+||++|+|++||||++||+||++++++
T Consensus         4 ~~e~qk~~iL~qiLt~eAreRL~~i~lvkPekA~~vE~~liqlaq~G~i~~kisd~~L~~iL~~is~~   71 (72)
T d1eija_           4 QLEMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRVAGK   71 (72)
T ss_dssp             SSCCSSHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCCHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHhccC
Confidence            34678999999999999999999999999999999999999999999999999999999999999863