Citrus Sinensis ID: 033042

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAIKKD
Secondary Structure (PSIPRED)
cEEEEEEccccccHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHccEEcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEEccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHcccEccHHHEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHccHHcccc
Coil and Loop (DISEMBL)
mlfdfgygvpfghFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVvegkpwgsVMKKVrkdypavqftswkvwptVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAIKKD
Flexible Loop (DISEMBL)
MLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLkaesaaikkd
Low Complexity Region (SEG)
MLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAIKKD
Disordered region (IsUnstruct)
*LFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKA********
Disordered Region (DISOPRED)
MLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFIN***********
Disordered Region (DISEMBL)
MLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAIKKD
Disordered Region (DISPRO)
MLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAES******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAIKKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q9ZS51	190	Peroxisomal membrane prot	no	no	0.976	0.657	0.460	2e-29
Q54GD8	184	PXMP2/4 family protein 3	yes	no	0.859	0.597	0.336	1e-12
Q54FR4	185	PXMP2/4 family protein 4	no	no	0.867	0.6	0.307	2e-09
Q6DGV7	199	Mpv17-like protein 2 OS=D	no	no	0.835	0.537	0.296	1e-08
Q54XX9	193	PXMP2/4 family protein 2	no	no	0.859	0.569	0.270	9e-08
Q2KIY1	196	Peroxisomal membrane prot	yes	no	0.859	0.561	0.302	2e-07
Q08743	309	Vacuolar membrane protein	yes	no	0.718	0.297	0.304	2e-07
Q567V2	206	Mpv17-like protein 2 OS=H	yes	no	0.835	0.519	0.297	3e-07
P42925	194	Peroxisomal membrane prot	yes	no	0.812	0.536	0.302	4e-07
Q07066	194	Peroxisomal membrane prot	yes	no	0.812	0.536	0.302	6e-07

>sp|Q9ZS51|PMP22_ARATH Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 84/126 (66%), Gaps = 1/126 (0%)

Query: 1   MLFDFGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVE 59
           ++F  G+  P GHF + +LD  FKG+ D ++VAKKV+LEQL  SP  + LFM Y+G+V+E
Sbjct: 59  VIFAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIE 118

Query: 60  GKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLK 119
             PW  V ++++K YP VQ T+W  +P V W+N++Y P  FR +  SLVA  W IF+ L+
Sbjct: 119 RTPWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLR 178

Query: 120 AESAAI 125
           A S  +
Sbjct: 179 ARSMTL 184

May be involved in the metabolism of reactive oxygen species.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 3/113 (2%)

Query: 10  PFGHFLNKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMK 68
           P  H+ +  LD +FK  +D      K++++QL+F+P+IN  F +    +++GKP   + K
Sbjct: 70  PLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLA-ILDGKPKSILFK 128

Query: 69  KVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAE 121
                +P ++  SWKVWP    +NF++ P   R LF +LV  CW I++++ A 
Sbjct: 129 LYFDLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILAT 180

Dictyostelium discoideum (taxid: 44689)

>sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 5   FGYGV--PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKP 62
           FG+ V  P  H+  K+LD  F  +  +    K+ ++Q++ SP  NFLF +  G ++EGK 
Sbjct: 66  FGFAVTGPLFHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMG-ILEGKS 124

Query: 63  WGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 116
              +++K++KD+     +   VWP + +VNF Y     R  F ++    W  F+
Sbjct: 125 KDDIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178

Dictyostelium discoideum (taxid: 44689)

>sp|Q6DGV7|M17L2_DANRE Mpv17-like protein 2 OS=Danio rerio GN=mpv17l2 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 1/108 (0%)

Query: 10  PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKK 69
           PF H+  ++LD  F G    +V KKVL++QL+ SP +   +    G++ EG  +    ++
Sbjct: 75  PFMHYWYQWLDKYFIGNGINNVCKKVLVDQLVASPTLGAWYFLGMGMM-EGHTFIEAQQE 133

Query: 70  VRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFIN 117
            R  +       W VWP    +NF + P +FR L+ ++V   W  +++
Sbjct: 134 FRDKFWEFYKADWCVWPAAQMINFYFLPPKFRVLYVNIVTLGWDTYLS 181

Danio rerio (taxid: 7955)

>sp|Q54XX9|PX24B_DICDI PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)

Query: 7   YGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSV 66
           Y  P  H+  + LD + KG     + KK+L++QL+F+P     FMT    +       ++
Sbjct: 66  YSGPMLHYWYRSLDIMVKGEGRSVIIKKMLIDQLLFAPVAIGGFMTVTNFINNKGELKNL 125

Query: 67  MKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFIN 117
               ++ + AV+  +W +WP    +NF   P   R L+ S+++  W +F++
Sbjct: 126 ENFTKELFYAVKI-NWLIWPAAQIINFSLVPPNLRVLYSSIISIFWGMFLS 175

Dictyostelium discoideum (taxid: 44689)

>sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 9/119 (7%)

Query: 2   LFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLV---V 58
           ++ F +  P GHF    ++         +  K++LL++L+F+P     F++ F LV   +
Sbjct: 78  IYGFFFTGPLGHFFYLLMERWIPSEVPLAGIKRLLLDRLLFAP----AFLSLFFLVMNFL 133

Query: 59  EGKPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 116
           EG+   +   K++  + PA++  +W+VW  V ++N  Y P QFR LF +LVA  W  ++
Sbjct: 134 EGQDTAAFAAKMKSGFWPALRM-NWRVWTPVQFININYIPVQFRVLFANLVALFWYAYL 191

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Bos taurus (taxid: 9913)

>sp|Q08743|YO292_YEAST Vacuolar membrane protein YOR292C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR292C PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 52/92 (56%)

Query: 31  VAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTW 90
           V ++VL +QL++SP   + F  +   V+EG    ++ KK+++ Y +    ++ VWP V +
Sbjct: 217 VFERVLSDQLLYSPISLYCFFMFSNYVMEGGDKDTLGKKIQRLYISTLGCNYLVWPMVQF 276

Query: 91  VNFQYAPQQFRELFFSLVASCWAIFINLKAES 122
           +NF   P+ F+  F S V   W  F++++  S
Sbjct: 277 INFLIMPRDFQAPFSSSVGVVWNCFLSMRNAS 308

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q567V2|M17L2_HUMAN Mpv17-like protein 2 OS=Homo sapiens GN=MPV17L2 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 4/111 (3%)

Query: 10  PFGHFLNKFLDAIFKG---RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSV 66
           PF H+    LD +F     R   +V KKVL++QL+ SP +   +    G  +EG+  G  
Sbjct: 74  PFLHYWYLSLDRLFPASGLRGFPNVLKKVLVDQLVASPLLGVWYFLGLG-CLEGQTVGES 132

Query: 67  MKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFIN 117
            +++R+ +       W VWP   +VNF + P QFR  + + +   W  +++
Sbjct: 133 CQELREKFWEFYKADWCVWPAAQFVNFLFVPPQFRVTYINGLTLGWDTYLS 183

Homo sapiens (taxid: 9606)

>sp|P42925|PXMP2_MOUSE Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 5/109 (4%)

Query: 10  PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGL-VVEGKPWGSVMK 68
           P  H+L  F++         +  K++LL++L F+P   FL + +F + ++EGK     + 
Sbjct: 84  PLSHYLYLFMEYSVPPEVPWASVKRLLLDRLFFAP--TFLLLFFFVMNLLEGKNVSVFVA 141

Query: 69  KVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 116
           K+R  + PA+Q  +W++W  + ++N  Y P QFR LF ++ A  W  ++
Sbjct: 142 KMRSGFWPALQM-NWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Mus musculus (taxid: 10090)

>sp|Q07066|PXMP2_RAT Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 5/109 (4%)

Query: 10  PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGL-VVEGKPWGSVMK 68
           P  H+L  F++         +  K++LL++L F+P   FL + +F + ++EGK     + 
Sbjct: 84  PLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAP--TFLLLFFFVMNLLEGKNISVFVA 141

Query: 69  KVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 116
           K+R  + PA+Q  +W++W  + ++N  Y P QFR LF ++ A  W  ++
Sbjct: 142 KMRSGFWPALQ-MNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
225433201	185	PREDICTED: peroxisomal membrane protein	0.992	0.686	0.664	2e-43
147795757	185	hypothetical protein VITISV_012682 [Viti	0.992	0.686	0.664	2e-43
297800820	185	predicted protein [Arabidopsis lyrata su	0.984	0.681	0.669	3e-43
351727218	185	uncharacterized protein LOC100527292 [Gl	0.984	0.681	0.637	8e-43
79325105	185	Peroxisomal membrane 22 kDa (Mpv17/PMP22	0.984	0.681	0.653	4e-42
186511773	173	Peroxisomal membrane 22 kDa (Mpv17/PMP22	0.984	0.728	0.653	5e-42
388498670	185	unknown [Lotus japonicus]	0.976	0.675	0.619	6e-42
449458842	183	PREDICTED: peroxisomal membrane protein	0.953	0.666	0.634	2e-40
449520295	183	PREDICTED: LOW QUALITY PROTEIN: peroxiso	0.953	0.666	0.634	3e-40
357441077	187	Peroxisomal membrane protein PMP22 [Medi	0.992	0.679	0.6	2e-38

>gi|225433201|ref|XP_002285350.1| PREDICTED: peroxisomal membrane protein PMP22 [Vitis vinifera] gi|296083689|emb|CBI23678.3| unnamed protein product [Vitis vinifera]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/128 (66%), Positives = 99/128 (77%), Gaps = 1/128 (0%)

Query: 1   MLFDFGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVE 59
           ML+ F Y  PFGHFL+K +D IF+G+ DN +VAKKV+LEQL  SPW N  FM Y+GLVVE
Sbjct: 57  MLYGFAYSGPFGHFLHKLMDIIFRGKKDNTTVAKKVVLEQLTSSPWNNMFFMMYYGLVVE 116

Query: 60  GKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLK 119
           G+ WG V  KVRKDYP+VQ T+WK WP V WVN+QY P QFR +F S VASCWAIF+NLK
Sbjct: 117 GRGWGLVRNKVRKDYPSVQLTAWKFWPIVGWVNYQYMPLQFRVVFHSFVASCWAIFLNLK 176

Query: 120 AESAAIKK 127
           A S AIKK
Sbjct: 177 ARSVAIKK 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795757|emb|CAN76530.1| hypothetical protein VITISV_012682 [Vitis vinifera]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/128 (66%), Positives = 99/128 (77%), Gaps = 1/128 (0%)

Query: 1   MLFDFGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVE 59
           ML+ F Y  PFGHFL+K +D IF+G+ DN +VAKKV+LEQL  SPW N  FM Y+GLVVE
Sbjct: 57  MLYGFAYSGPFGHFLHKLMDIIFRGKKDNTTVAKKVVLEQLTSSPWNNMFFMMYYGLVVE 116

Query: 60  GKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLK 119
           G+ WG V  KVRKDYP+VQ T+WK WP V WVN+QY P QFR +F S VASCWAIF+NLK
Sbjct: 117 GRGWGLVKNKVRKDYPSVQLTAWKFWPIVGWVNYQYMPLQFRVVFHSFVASCWAIFLNLK 176

Query: 120 AESAAIKK 127
           A S AIKK
Sbjct: 177 ARSVAIKK 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800820|ref|XP_002868294.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297314130|gb|EFH44553.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/127 (66%), Positives = 99/127 (77%), Gaps = 1/127 (0%)

Query: 1   MLFDFGYGVPFGHFLNKFLDAIFKGRD-NKSVAKKVLLEQLIFSPWINFLFMTYFGLVVE 59
           ML+ F YG PFGHF +K +D IFKG+  N +VAKKVLLEQL  SPW NFLFM+Y+GLVVE
Sbjct: 57  MLYGFAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVE 116

Query: 60  GKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLK 119
           G+PW  V +KV KDYP +Q T+WK WP V WVN+QY P QFR LF S VASCW+IF+NLK
Sbjct: 117 GRPWKLVKQKVGKDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLK 176

Query: 120 AESAAIK 126
           A S AIK
Sbjct: 177 ARSPAIK 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727218|ref|NP_001237665.1| uncharacterized protein LOC100527292 [Glycine max] gi|255632021|gb|ACU16363.1| unknown [Glycine max]

 Score =  178 bits (451), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 81/127 (63%), Positives = 100/127 (78%), Gaps = 1/127 (0%)

Query: 1   MLFDFGYGVPFGHFLNKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVE 59
           ML+ F Y  PFGHFL+K +D IFKG + N +VAKKV+LEQ+  SPW NFLFM Y+GLV+E
Sbjct: 57  MLYGFAYSGPFGHFLHKLMDKIFKGEKGNDTVAKKVILEQITSSPWNNFLFMMYYGLVIE 116

Query: 60  GKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLK 119
           G+PW +V+ KV+KDYP+VQ T+WK WP V WVN+QY P Q R +F S VA+CWAIF+NLK
Sbjct: 117 GRPWSTVINKVKKDYPSVQLTAWKFWPIVGWVNYQYMPLQLRVVFHSSVAACWAIFLNLK 176

Query: 120 AESAAIK 126
           A S AIK
Sbjct: 177 ARSVAIK 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79325105|ref|NP_001031637.1| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana] gi|62321523|dbj|BAD95003.1| hypothetical protein [Arabidopsis thaliana] gi|98961831|gb|ABF59245.1| unknown protein [Arabidopsis thaliana] gi|332658013|gb|AEE83413.1| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/127 (65%), Positives = 97/127 (76%), Gaps = 1/127 (0%)

Query: 1   MLFDFGYGVPFGHFLNKFLDAIFKGRD-NKSVAKKVLLEQLIFSPWINFLFMTYFGLVVE 59
           ML+ F YG PFGHF +K +D IFKG+  N +VAKKVLLEQL  SPW NFLFM+Y+GLVVE
Sbjct: 57  MLYGFAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVE 116

Query: 60  GKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLK 119
           G+PW  V  K+ KDYP +Q T+WK WP V WVN+QY P QFR LF S VASCW+IF+NLK
Sbjct: 117 GRPWKLVKHKLGKDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLK 176

Query: 120 AESAAIK 126
           A S  IK
Sbjct: 177 ARSPVIK 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186511773|ref|NP_001118981.1| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana] gi|332658014|gb|AEE83414.1| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 83/127 (65%), Positives = 97/127 (76%), Gaps = 1/127 (0%)

Query: 1   MLFDFGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVE 59
           ML+ F YG PFGHF +K +D IFKG+  N +VAKKVLLEQL  SPW NFLFM+Y+GLVVE
Sbjct: 45  MLYGFAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVE 104

Query: 60  GKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLK 119
           G+PW  V  K+ KDYP +Q T+WK WP V WVN+QY P QFR LF S VASCW+IF+NLK
Sbjct: 105 GRPWKLVKHKLGKDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLK 164

Query: 120 AESAAIK 126
           A S  IK
Sbjct: 165 ARSPVIK 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498670|gb|AFK37401.1| unknown [Lotus japonicus]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 78/126 (61%), Positives = 99/126 (78%), Gaps = 1/126 (0%)

Query: 3   FDFGYGVPFGHFLNKFLDAIFKGRD-NKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGK 61
           + F Y  PFGHFL+K +D IFKG+  N++VAKKV+LEQ+  SPW NFLFM Y+GLV+EG+
Sbjct: 59  YGFAYSGPFGHFLHKLMDKIFKGKTGNETVAKKVILEQITSSPWNNFLFMMYYGLVIEGR 118

Query: 62  PWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAE 121
           PW  V+ KV+KDYP+VQ T+WK WP V WVN+QY P QFR +F S VA+CW IF+NL+A 
Sbjct: 119 PWSMVINKVKKDYPSVQLTAWKFWPVVGWVNYQYMPMQFRVIFHSFVAACWGIFLNLRAR 178

Query: 122 SAAIKK 127
           + AIKK
Sbjct: 179 TVAIKK 184

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458842|ref|XP_004147155.1| PREDICTED: peroxisomal membrane protein PMP22-like [Cucumis sativus]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/123 (63%), Positives = 92/123 (74%), Gaps = 1/123 (0%)

Query: 1   MLFDFGYGVPFGHFLNKFLDAIFKGRD-NKSVAKKVLLEQLIFSPWINFLFMTYFGLVVE 59
           ML+ F Y  PFGHFL+K +D IFKG+  N +VAKKVLLEQ+  SPW N  FM Y+GLVVE
Sbjct: 57  MLYGFAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQVTSSPWNNLFFMMYYGLVVE 116

Query: 60  GKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLK 119
           G+PW  V  KVRKDYP +Q T+W+ WP V WVN+QY P QFR +F S VASCW IF+NLK
Sbjct: 117 GRPWSLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPIQFRVIFHSFVASCWGIFLNLK 176

Query: 120 AES 122
           A S
Sbjct: 177 ARS 179

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520295|ref|XP_004167169.1| PREDICTED: LOW QUALITY PROTEIN: peroxisomal membrane protein PMP22-like [Cucumis sativus]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/123 (63%), Positives = 93/123 (75%), Gaps = 1/123 (0%)

Query: 1   MLFDFGYGVPFGHFLNKFLDAIFKGRD-NKSVAKKVLLEQLIFSPWINFLFMTYFGLVVE 59
           ML+ F Y  PFGHFL+K +D IFKG+  N +VAKKVLLEQ+  SPW  F+FM Y+GLVVE
Sbjct: 57  MLYGFAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQVTSSPWNXFIFMMYYGLVVE 116

Query: 60  GKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLK 119
           G+PW  V  KVRKDYP +Q T+W+ WP V WVN+QY P QFR +F S VASCW IF+NLK
Sbjct: 117 GRPWSLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPIQFRVIFHSFVASCWGIFLNLK 176

Query: 120 AES 122
           A S
Sbjct: 177 ARS 179

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441077|ref|XP_003590816.1| Peroxisomal membrane protein PMP22 [Medicago truncatula] gi|355479864|gb|AES61067.1| Peroxisomal membrane protein PMP22 [Medicago truncatula]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/130 (60%), Positives = 96/130 (73%), Gaps = 3/130 (2%)

Query: 1   MLFDFGYGVPFGHFLNKFLDAIFKGRD-NKSVAKKVLLEQLIFSPWINFLFMTYFGLVVE 59
           ML+ F Y  PFGH+L+  +D +FKG+  N++VAKKV+LEQ+  SPW NF FM Y+GLV+E
Sbjct: 57  MLYGFAYSGPFGHYLHLLMDKLFKGKKGNETVAKKVILEQITSSPWNNFFFMMYYGLVIE 116

Query: 60  GKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLK 119
           G+P   VM KV+ DYPAVQ  +WK WP V WVN+QY P QFR LF + V SCWAIF+NLK
Sbjct: 117 GRPLNIVMNKVKNDYPAVQLMAWKFWPIVGWVNYQYMPLQFRVLFHNFVGSCWAIFLNLK 176

Query: 120 AES--AAIKK 127
           A S  A IKK
Sbjct: 177 ARSSVAIIKK 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:1009023385	185	AT4G14305 "AT4G14305" [Arabido	0.984	0.681	0.653	1.7e-43
TAIR|locus:2137124	190	PMP22 [Arabidopsis thaliana (t	0.976	0.657	0.460	5.6e-29
DICTYBASE|DDB_G0290223	184	DDB_G0290223 "pmp22 family pro	0.843	0.586	0.353	3.7e-16
ZFIN|ZDB-GENE-040912-184	194	zgc:92599 "zgc:92599" [Danio r	0.820	0.541	0.333	1.9e-12
DICTYBASE|DDB_G0290631	185	DDB_G0290631 "pmp22 family pro	0.867	0.6	0.307	2.4e-12
ZFIN|ZDB-GENE-040718-306	199	mpv17l2 "MPV17 mitochondrial m	0.984	0.633	0.284	6.4e-12
UNIPROTKB|F1PZH3	156	PXMP2 "Uncharacterized protein	0.882	0.724	0.293	1.3e-11
UNIPROTKB|Q2KIY1	196	PXMP2 "Peroxisomal membrane pr	0.882	0.576	0.293	2.8e-11
TAIR|locus:2183244	288	AT5G19750 "AT5G19750" [Arabido	0.976	0.434	0.253	3.8e-11
MGI|MGI:107487	194	Pxmp2 "peroxisomal membrane pr	0.812	0.536	0.302	5.8e-11

TAIR|locus:1009023385 AT4G14305 "AT4G14305" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 83/127 (65%), Positives = 97/127 (76%)

Query:     1 MLFDFGYGVPFGHFLNKFLDAIFKGRD-NKSVAKKVLLEQLIFSPWINFLFMTYFGLVVE 59
             ML+ F YG PFGHF +K +D IFKG+  N +VAKKVLLEQL  SPW NFLFM+Y+GLVVE
Sbjct:    57 MLYGFAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVE 116

Query:    60 GKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLK 119
             G+PW  V  K+ KDYP +Q T+WK WP V WVN+QY P QFR LF S VASCW+IF+NLK
Sbjct:   117 GRPWKLVKHKLGKDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLK 176

Query:   120 AESAAIK 126
             A S  IK
Sbjct:   177 ARSPVIK 183

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2137124 PMP22 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 58/126 (46%), Positives = 84/126 (66%)

Query:     1 MLFDFGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVE 59
             ++F  G+  P GHF + +LD  FKG+ D ++VAKKV+LEQL  SP  + LFM Y+G+V+E
Sbjct:    59 VIFAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIE 118

Query:    60 GKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLK 119
               PW  V ++++K YP VQ T+W  +P V W+N++Y P  FR +  SLVA  W IF+ L+
Sbjct:   119 RTPWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLR 178

Query:   120 AESAAI 125
             A S  +
Sbjct:   179 ARSMTL 184

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IDA

DICTYBASE|DDB_G0290223 DDB_G0290223 "pmp22 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 40/113 (35%), Positives = 69/113 (61%)

Query:    10 PFGHFLNKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMK 68
             P  H+ +  LD +FK  +D      K++++QL+F+P+IN  F +    +++GKP  S++ 
Sbjct:    70 PLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLA-ILDGKP-KSILF 127

Query:    69 KVRKD-YPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKA 120
             K+  D +P ++  SWKVWP    +NF++ P   R LF +LV  CW I++++ A
Sbjct:   128 KLYFDLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILA 179

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040912-184 zgc:92599 "zgc:92599" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 36/108 (33%), Positives = 56/108 (51%)

Query:    10 PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKK 69
             P  H+    L+ +        + K++LLE+LIF+P    LF       +EGK    V  K
Sbjct:    84 PVSHYFYHLLEVLLPTTVPYCLIKRLLLERLIFAPAFLLLFYVVMN-ALEGKTLADVQNK 142

Query:    70 VRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 116
             ++  Y PA++  +WKVW    ++N  Y P QFR LF ++VA  W  ++
Sbjct:   143 LKTSYWPAMKM-NWKVWTPFQFININYVPVQFRVLFANMVALFWYAYL 189

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0290631 DDB_G0290631 "pmp22 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 35/114 (30%), Positives = 60/114 (52%)

Query:     5 FGYGV--PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKP 62
             FG+ V  P  H+  K+LD  F  +  +    K+ ++Q++ SP  NFLF +  G ++EGK 
Sbjct:    66 FGFAVTGPLFHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMG-ILEGKS 124

Query:    63 WGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 116
                +++K++KD+     +   VWP + +VNF Y     R  F ++    W  F+
Sbjct:   125 KDDIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-040718-306 mpv17l2 "MPV17 mitochondrial membrane protein-like 2" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 37/130 (28%), Positives = 67/130 (51%)

Query:     2 LFDFGYGV-PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEG 60
             +F  G  + PF H+  ++LD  F G    +V KKVL++QL+ SP +   +    G++ EG
Sbjct:    66 MFAVGCSMGPFMHYWYQWLDKYFIGNGINNVCKKVLVDQLVASPTLGAWYFLGMGMM-EG 124

Query:    61 KPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFIN-LK 119
               +    ++ R  +       W VWP    +NF + P +FR L+ ++V   W  +++ LK
Sbjct:   125 HTFIEAQQEFRDKFWEFYKADWCVWPAAQMINFYFLPPKFRVLYVNIVTLGWDTYLSYLK 184

Query:   120 -AESAAIKKD 128
               ++  + K+
Sbjct:   185 HRDTVEVTKE 194

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1PZH3 PXMP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 34/116 (29%), Positives = 62/116 (53%)

Query:     2 LFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGK 61
             ++ F +  P  HF   F++         +  K++LL++L+F+P    LF      + EG+
Sbjct:    38 IYGFFFTGPLNHFFYLFMEHWIPPEVPLAGVKRLLLDRLLFAPAFLLLFFLIMNFL-EGR 96

Query:    62 PWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 116
                +   ++R+ + PA+   +W+VW  V ++N  Y P QFR LF +LV+  W I++
Sbjct:    97 ETAAFAVQIRRSFWPALCM-NWRVWTPVQFININYVPLQFRVLFANLVSLFWYIYL 151

GO:0043234 "protein complex" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q2KIY1 PXMP2 "Peroxisomal membrane protein 2" [Bos taurus (taxid:9913)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 34/116 (29%), Positives = 61/116 (52%)

Query:     2 LFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGK 61
             ++ F +  P GHF    ++         +  K++LL++L+F+P    LF      + EG+
Sbjct:    78 IYGFFFTGPLGHFFYLLMERWIPSEVPLAGIKRLLLDRLLFAPAFLSLFFLVMNFL-EGQ 136

Query:    62 PWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 116
                +   K++  + PA++  +W+VW  V ++N  Y P QFR LF +LVA  W  ++
Sbjct:   137 DTAAFAAKMKSGFWPALRM-NWRVWTPVQFININYIPVQFRVLFANLVALFWYAYL 191

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2183244 AT5G19750 "AT5G19750" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 33/130 (25%), Positives = 69/130 (53%)

Query:     1 MLFDF-GYGV--PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLV 57
             + F F G G+  P  HF   +L  +           ++LL+Q +F+P    +F++   + 
Sbjct:   161 LTFTFLGLGLVGPTLHFWYLYLSKVVTASGLSGAVIRLLLDQFVFAPIFVGVFLSAV-VT 219

Query:    58 VEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFIN 117
             +EGKP  +V+ K+++++      +W++W    ++NF++ PQ ++ L  ++VA  W + ++
Sbjct:   220 LEGKP-SNVIPKLQQEWTGAMIANWQLWIPFQFLNFRFVPQNYQVLASNVVALAWNVILS 278

Query:   118 LKAESAAIKK 127
              KA    + K
Sbjct:   279 FKAHKEVVAK 288

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

MGI|MGI:107487 Pxmp2 "peroxisomal membrane protein 2" [Mus musculus (taxid:10090)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 33/109 (30%), Positives = 61/109 (55%)

Query:    10 PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGL-VVEGKPWGSVMK 68
             P  H+L  F++         +  K++LL++L F+P   FL + +F + ++EGK     + 
Sbjct:    84 PLSHYLYLFMEYSVPPEVPWASVKRLLLDRLFFAP--TFLLLFFFVMNLLEGKNVSVFVA 141

Query:    69 KVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 116
             K+R  + PA+Q  +W++W  + ++N  Y P QFR LF ++ A  W  ++
Sbjct:   142 KMRSGFWPALQM-NWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020308001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (185 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
pfam04117	68	pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family	7e-14

>gnl|CDD|202894 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family

 Score = 61.5 bits (150), Expect = 7e-14
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 57  VVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 116
           ++EGK    + +K+++ +      +WKVWP V ++NF + P  +R LF +LV   W  ++
Sbjct: 3   LLEGKSLEEIKEKLKEKFWPTLKANWKVWPPVQFINFAFVPVHYRVLFVNLVGIGWNTYL 62

Query: 117 NLKA 120
           +   
Sbjct: 63  SYVN 66

The 22-kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information. Mpv17 is a closely related peroxisomal protein. In mouse, the Mpv17 protein is involved in the development of early-onset glomerulosclerosis. More recently a homolog of Mpv17 in S. cerevisiae has been been found to be an integral membrane protein of the inner mitochondrial membrane where it has been proposed to have a role in ethanol metabolism and tolerance during heat-shock. Defects in MPV17 is associated with mitochondrial DNA depletion syndrome (MDDS) and Navajo neurohepatopathy (NNH). MDDS is a clinically heterogeneous group of disorders characterized by a reduction in mitochondrial DNA (mtDNA) copy number. Primary mtDNA depletion is inherited as an autosomal recessive trait and may affect single organs, typically muscle or liver, or multiple tissues. Individuals with the hepatocerebral form of mitochondrial DNA depletion syndrome have early progressive liver failure and neurologic abnormalities, hypoglycemia, and increased lactate in body fluids. NNH is an autosomal recessive disease that is prevalent among Navajo children in the South Western states of America. The major clinical features are hepatopathy, peripheral neuropathy, corneal anesthesia and scarring, acral mutilation, cerebral leukoencephalopathy, failure to thrive, and recurrent metabolic acidosis with intercurrent infections. Infantile, childhood, and classic forms of NNH have been described. Mitochondrial DNA depletion was detected in the livers of patients, suggesting a primary defect in mtDNA maintenance. Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
KOG1944	222	consensus Peroxisomal membrane protein MPV17 and r	100.0
PF04117	68	Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR0	99.94

>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]

Probab=100.00  E-value=5.4e-38  Score=234.69  Aligned_cols=124  Identities=31%  Similarity=0.628  Sum_probs=120.2

Q ss_pred             CeeeeeeecccccHHHHHHhhhcCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCChhhHHHHHHhhChHHHHh
Q 033042            1 MLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFT   80 (128)
Q Consensus         1 a~~G~~~~gp~~h~wy~~L~~~~~~~~~~~~~~Kv~~Dq~v~~P~~~~~f~~~~~~~l~g~s~~~~~~~~~~~~~~~~~~   80 (128)
                      +++|+++.||.+|+||+.||+++|.++..++++|++.||++++|+.+..|+..++ ++||++.++..++++++++|++++
T Consensus        93 ~~~G~~f~gp~~~~Wy~~L~~~~p~~~~~~~~~kvl~dql~~~P~~~~~ff~~~~-~legk~~~~~~~~~~~~~~p~l~~  171 (222)
T KOG1944|consen   93 GIFGFLFVGPTLHYWYRLLSKLFPKKTLITVVKKVLLDQLVFAPLFIVVFFLLMG-LLEGKTNEEAKAKLKRKFWPTLKA  171 (222)
T ss_pred             HhhhhheeccchhHHHHHHHHHccCccHHHHHHHHHHhhhhhchHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhh
Confidence            4689999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             cceechHHHhhhheeecCCchhhHhHHHHHHHHHHHHHhhhhHhh
Q 033042           81 SWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAI  125 (128)
Q Consensus        81 ~~~~Wp~~~~inf~~vP~~~Rvl~~n~v~~~W~~yLS~~~~~~~~  125 (128)
                      +|++||++|++||++||+++|++++|+++++||+|||+++++.++
T Consensus       172 ~~~~WP~~q~inF~~VP~~~rvl~~~~vsl~W~~~Ls~~~~~~~~  216 (222)
T KOG1944|consen  172 NWMVWPLVQFINFRLVPLQYRVLFVNIVSLVWNTYLSYKNASLVE  216 (222)
T ss_pred             hheecchhheeeeEEccccceehhhhhHHHHHHHHHHHHhhcccc
Confidence            999999999999999999999999999999999999999887743

>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes

Probab=99.94  E-value=3.3e-28  Score=151.19  Aligned_cols=68  Identities=35%  Similarity=0.852  Sum_probs=66.1

Q ss_pred             HHHHhcCCChhhHHHHHHhhChHHHHhcceechHHHhhhheeecCCchhhHhHHHHHHHHHHHHHhhhh
Q 033042           54 FGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAES  122 (128)
Q Consensus        54 ~~~~l~g~s~~~~~~~~~~~~~~~~~~~~~~Wp~~~~inf~~vP~~~Rvl~~n~v~~~W~~yLS~~~~~  122 (128)
                      |+ ++||+|++++.+++|++++++++++|++|||+|++||.+||+++|++++|+|+++||+|||+++||
T Consensus         1 Mg-~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r   68 (68)
T PF04117_consen    1 MG-LLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR   68 (68)
T ss_pred             CC-cccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence            57 899999999999999999999999999999999999999999999999999999999999999886

PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00