Citrus Sinensis ID: 033045

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRRDRSFGFAMVAFFFLLDS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccccccccccccccccHHHccEEEEEEEcccHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccccccccccccccEEEEccEEEEEEEcccHHHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MNSVGRQLAgyltqpsqglnlfsrNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRRDRSFGFAMVAFFFLLDS
Flexible Loop (DISEMBL)
mnsvgrqlagyltqpsqgLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIkreqrhhiknsekrvlarknlerkirsqdlarKLKAilvkkvrrdrsfGFAMVAFFFLLDS
Low Complexity Region (SEG)
MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRRDRSFGFAMVAFFFLLDS
Disordered region (IsUnstruct)
*****************GLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQ****************************************DLARKLKAILVKKVRRDRSFGFAMVAFFFLL**
Disordered Region (DISOPRED)
********AGYLTQPSQGLNLF*R*******VQQWRGIRVKVFNGNLEQALS***********************************************KLKAILVKKVRRDRSFGFAMVAFFFLLDS
Disordered Region (DISEMBL)
MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRRDRSFGFAMVAFFFLLDS
Disordered Region (DISPRO)
*****R*L*GYLTQPSQGLNLFSRN*CQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIK*E*R*HIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRRDRSFGFAMVAFFFLLDS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRRDRSFGFAMVAFFFLLDS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
296086848	106	unnamed protein product [Vitis vinifera]	0.812	0.981	0.727	3e-33
359480413	141	PREDICTED: uncharacterized protein LOC10	0.812	0.737	0.727	4e-33
388518987	112	unknown [Lotus japonicus]	0.859	0.982	0.645	2e-31
388521069	112	unknown [Lotus japonicus]	0.859	0.982	0.645	2e-31
356568575	112	PREDICTED: uncharacterized protein LOC10	0.859	0.982	0.663	3e-30
351722514	112	uncharacterized protein LOC100500533 [Gl	0.812	0.928	0.646	6e-30
255578365	109	conserved hypothetical protein [Ricinus	0.835	0.981	0.637	2e-29
449464006	103	PREDICTED: uncharacterized protein LOC10	0.773	0.961	0.651	2e-28
297818170	181	hypothetical protein ARALYDRAFT_484399 [	0.757	0.535	0.576	3e-27
240255434	101	Ribosomal protein S21 family protein [Ar	0.773	0.980	0.590	7e-27

>gi|296086848|emb|CBI33015.3| unnamed protein product [Vitis vinifera]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/110 (72%), Positives = 88/110 (80%), Gaps = 6/110 (5%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
           M+S+ R ++     PS   N  S   C+   +QQWRGIRVKVFNGNLE AL  MQRKMQS
Sbjct: 1   MSSIVRHVSTIFRCPSLVPNSLS---CE---LQQWRGIRVKVFNGNLESALVVMQRKMQS 54

Query: 61  SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVR 110
           SGIERLIKREQ HHIKNSEKRVLARKNLER+IRSQDLARKLKAIL+KKVR
Sbjct: 55  SGIERLIKREQTHHIKNSEKRVLARKNLERRIRSQDLARKLKAILIKKVR 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480413|ref|XP_003632453.1| PREDICTED: uncharacterized protein LOC100855184 [Vitis vinifera]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/110 (72%), Positives = 88/110 (80%), Gaps = 6/110 (5%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
           M+S+ R ++     PS   N  S   C+   +QQWRGIRVKVFNGNLE AL  MQRKMQS
Sbjct: 1   MSSIVRHVSTIFRCPSLVPNSLS---CE---LQQWRGIRVKVFNGNLESALVVMQRKMQS 54

Query: 61  SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVR 110
           SGIERLIKREQ HHIKNSEKRVLARKNLER+IRSQDLARKLKAIL+KKVR
Sbjct: 55  SGIERLIKREQTHHIKNSEKRVLARKNLERRIRSQDLARKLKAILIKKVR 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518987|gb|AFK47555.1| unknown [Lotus japonicus]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 88/110 (80%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
           MNS+ R+L+    + +      +  + Q  Q+QQ RGIRV+VFNGNLE AL+ MQRKM S
Sbjct: 1   MNSIARRLSSLFGKSACATEPLNSGRHQLQQLQQCRGIRVRVFNGNLESALALMQRKMTS 60

Query: 61  SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVR 110
           SGIER+IK+EQR HIKNSEKRVLARKNLER++RS+DLARKLKAI++KKVR
Sbjct: 61  SGIERMIKKEQRFHIKNSEKRVLARKNLERRLRSEDLARKLKAIMIKKVR 110

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521069|gb|AFK48596.1| unknown [Lotus japonicus]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 88/110 (80%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
           MNS+ R+L+    + +      +  + Q  Q+QQ RGIRV+VFNGNLE AL+ MQRKM S
Sbjct: 1   MNSIARRLSNLFGKSACATEPLNSGRHQLQQLQQCRGIRVRVFNGNLESALALMQRKMTS 60

Query: 61  SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVR 110
           SGIER+IK+EQR HIKNSEKRVLARKNLER++RS+DLARKLKAI++KKVR
Sbjct: 61  SGIERMIKKEQRFHIKNSEKRVLARKNLERRLRSEDLARKLKAIMIKKVR 110

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568575|ref|XP_003552486.1| PREDICTED: uncharacterized protein LOC100811271 [Glycine max]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 85/110 (77%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
           MNSV R+L+  +         F+    Q  Q+QQ RGIRVKV  GNLE AL  MQRKMQS
Sbjct: 1   MNSVARRLSSLVRHSGFTPEPFNNGHHQMQQLQQCRGIRVKVMGGNLEAALGLMQRKMQS 60

Query: 61  SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVR 110
           SGIER+IK+EQR HIKNSEKRVLA+KNLERKIRS+DLA+KLKAI++KKVR
Sbjct: 61  SGIERMIKQEQRFHIKNSEKRVLAQKNLERKIRSEDLAKKLKAIMIKKVR 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722514|ref|NP_001235711.1| uncharacterized protein LOC100500533 [Glycine max] gi|255630575|gb|ACU15647.1| unknown [Glycine max]

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 88/116 (75%), Gaps = 12/116 (10%)

Query: 1   MNSVGRQLA------GYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWM 54
           MNSV R+L+      G+  +P      F+    Q  ++QQ RGIRVKV  GNLE AL  M
Sbjct: 1   MNSVARRLSRLFRHSGFTPEP------FNNGHHQMQKLQQCRGIRVKVIGGNLEAALGLM 54

Query: 55  QRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVR 110
           QRKMQSSGIER+IK+EQR HIKNSEKRVLA+KNLERKIRS+DLARKLKAI++KKVR
Sbjct: 55  QRKMQSSGIERMIKQEQRFHIKNSEKRVLAQKNLERKIRSEDLARKLKAIMIKKVR 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578365|ref|XP_002530049.1| conserved hypothetical protein [Ricinus communis] gi|223530465|gb|EEF32349.1| conserved hypothetical protein [Ricinus communis]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 90/113 (79%), Gaps = 6/113 (5%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQR-HQVQQWRGIRVKVFNGNLEQALSWMQRKMQ 59
           MN++ RQ+       +     F+ +  Q  +Q+QQWRGIRVKVF+GNLE+AL+ MQRKMQ
Sbjct: 1   MNTIARQVCAIFKVTN-----FNDSLSQELYQIQQWRGIRVKVFDGNLERALTVMQRKMQ 55

Query: 60  SSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRRD 112
           SSGIERLIKREQ HHIKNSEKRVLARK L+ KI+SQ+LARKLK+IL+KKV ++
Sbjct: 56  SSGIERLIKREQIHHIKNSEKRVLARKRLQHKIQSQELARKLKSILIKKVSQN 108

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464006|ref|XP_004149720.1| PREDICTED: uncharacterized protein LOC101216913 [Cucumis sativus] gi|449512828|ref|XP_004164152.1| PREDICTED: uncharacterized LOC101216913 [Cucumis sativus]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 86/112 (76%), Gaps = 13/112 (11%)

Query: 1   MNSVGRQLAGYL--TQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKM 58
           MNS+ R ++  +  + P+          C +HQ  QWRGIRVKV  G LE+AL+ +QRKM
Sbjct: 1   MNSLARNISCSIRSSIPTN---------CLQHQ--QWRGIRVKVLRGGLERALTVLQRKM 49

Query: 59  QSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVR 110
           QSSGIERLIKREQ HHIKNSEKRVLARK LERKI+S+DLARKLKAIL+KKVR
Sbjct: 50  QSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKVR 101

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818170|ref|XP_002876968.1| hypothetical protein ARALYDRAFT_484399 [Arabidopsis lyrata subsp. lyrata] gi|297322806|gb|EFH53227.1| hypothetical protein ARALYDRAFT_484399 [Arabidopsis lyrata subsp. lyrata]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/111 (57%), Positives = 86/111 (77%), Gaps = 14/111 (12%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
           MN++ +++ G++TQ               HQ+QQ RGIRVKVF+ +L++AL+ +Q+KMQS
Sbjct: 1   MNTIAKRVTGFMTQN--------------HQLQQERGIRVKVFSNDLDKALTILQKKMQS 46

Query: 61  SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRR 111
           SG+ERLIK  Q HHIKNSEK+VLARKNLER+I+S D ARKL++IL+KKVRR
Sbjct: 47  SGMERLIKGTQTHHIKNSEKKVLARKNLERRIKSIDFARKLQSILIKKVRR 97

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255434|ref|NP_189267.4| Ribosomal protein S21 family protein [Arabidopsis thaliana] gi|332643628|gb|AEE77149.1| Ribosomal protein S21 family protein [Arabidopsis thaliana]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 87/110 (79%), Gaps = 11/110 (10%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
           MN++ +++ G +T+PS  LN          Q+QQ RGIRVKVF+ +L++AL+ +Q+KMQS
Sbjct: 1   MNTIAKRVTGLVTRPS--LN---------QQLQQERGIRVKVFSNDLDKALTILQKKMQS 49

Query: 61  SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVR 110
           SG+ERLIK  Q HHIKNSEK+VLARKNLER+I+S D ARKL++IL+KKVR
Sbjct: 50  SGMERLIKGTQTHHIKNSEKKVLARKNLERRIKSIDFARKLQSILIKKVR 99

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2079271	101	AT3G26360 [Arabidopsis thalian	0.773	0.980	0.590	1.2e-26
TIGR_CMR|APH_1051	91	APH_1051 "ribosomal protein S2	0.406	0.571	0.388	8.1e-05
TIGR_CMR|SPO_0229	68	SPO_0229 "ribosomal protein S2	0.468	0.882	0.396	8.1e-05
TIGR_CMR|ECH_0978	90	ECH_0978 "ribosomal protein S2	0.406	0.577	0.351	0.00045
ZFIN|ZDB-GENE-070615-13	87	zgc:163126 "zgc:163126" [Danio	0.570	0.839	0.316	0.00045

TAIR|locus:2079271 AT3G26360 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 65/110 (59%), Positives = 87/110 (79%)

Query:     1 MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
             MN++ +++ G +T+PS  LN          Q+QQ RGIRVKVF+ +L++AL+ +Q+KMQS
Sbjct:     1 MNTIAKRVTGLVTRPS--LN---------QQLQQERGIRVKVFSNDLDKALTILQKKMQS 49

Query:    61 SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVR 110
             SG+ERLIK  Q HHIKNSEK+VLARKNLER+I+S D ARKL++IL+KKVR
Sbjct:    50 SGMERLIKGTQTHHIKNSEKKVLARKNLERRIKSIDFARKLQSILIKKVR 99

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TIGR_CMR|APH_1051 APH_1051 "ribosomal protein S21" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query:    38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERK 91
             + V V++G++EQ +  +++K+Q  G  R +K    HH K SEKRV  R + ER+
Sbjct:     2 VEVVVYHGDIEQGIRTLKKKLQREGKPRQMKIV--HHEKPSEKRVRKRDDCERR 53

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

TIGR_CMR|SPO_0229 SPO_0229 "ribosomal protein S21" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 25/63 (39%), Positives = 41/63 (65%)

Query:    38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
             ++V V + N++QAL  +++K+Q  G+ R +K +Q H  K SEK+  AR+  E   R++ L
Sbjct:     1 MQVSVRDNNVDQALRALKKKLQREGVFREMKLKQ-HFEKPSEKK--AREKAEAIRRARKL 57

Query:    98 ARK 100
             ARK
Sbjct:    58 ARK 60

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

TIGR_CMR|ECH_0978 ECH_0978 "ribosomal protein S21" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query:    38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERK 91
             + V V++G++EQ +  +++K+Q  G  R +K    HH K SEKR   + + ER+
Sbjct:     2 VEVIVYHGDIEQGIRTLKKKLQREGKPRQMKIT--HHEKPSEKRARKKDDCERR 53

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

ZFIN|ZDB-GENE-070615-13 zgc:163126 "zgc:163126" [Danio rerio (taxid:7955)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 25/79 (31%), Positives = 44/79 (55%)

Query:    40 VKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLE--RKIRSQDL 97
             V V NGN++ A  ++ R + + GI   +KR +R+  K   K++  RKN E  ++I + ++
Sbjct:    12 VMVQNGNVDLAYGFLNRVLSTDGIIESVKR-RRYFEKPCRKQI--RKNYENCKRIYNTEM 68

Query:    98 ARKLKAILVKKVRRDRSFG 116
             +RK+   + K  R D   G
Sbjct:    69 SRKI-GFIAKAQREDPWLG 86


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.135   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       128   0.00091  102 3  11 22  0.44    30
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  124 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.01u 0.08s 17.09t   Elapsed:  00:00:01
  Total cpu time:  17.01u 0.08s 17.09t   Elapsed:  00:00:01
  Start:  Fri May 10 12:12:27 2013   End:  Fri May 10 12:12:28 2013

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011884001 SubName- Full=Chromosome undetermined scaffold_346, whole genome shotgun sequence; (106 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
pfam01165	53	pfam01165, Ribosomal_S21, Ribosomal protein S21	3e-04

>gnl|CDD|201634 pfam01165, Ribosomal_S21, Ribosomal protein S21

 Score = 36.0 bits (84), Expect = 3e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 38 IRVKV-FNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLER 90
          + VKV  N N+E+AL   +RK++ +GI R ++R +R + K SEKR   ++   R
Sbjct: 1  VEVKVKENENIERALRRFKRKVEKNGILRELRR-RRFYEKPSEKRKRKKREARR 53

Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
TIGR00030	58	S21p ribosomal protein S21. This model describes b	99.72
PRK00270	64	rpsU 30S ribosomal protein S21; Reviewed	99.69
COG0828	67	RpsU Ribosomal protein S21 [Translation, ribosomal	99.68
PF01165	57	Ribosomal_S21: Ribosomal protein S21; InterPro: IP	99.44
PF09413	67	DUF2007: Domain of unknown function (DUF2007); Int	80.62

>TIGR00030 S21p ribosomal protein S21

Probab=99.72  E-value=1.1e-17  Score=110.84  Aligned_cols=53  Identities=34%  Similarity=0.483  Sum_probs=46.9

Q ss_pred             EEEEecCC-HHHHHHHHHHHHhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHH
Q 033045           39 RVKVFNGN-LEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKI   92 (128)
Q Consensus        39 ~V~VrDnN-vEqALrvLKrKMq~eGifRemK~r~~~yeKPSEKR~raRk~~err~   92 (128)
                      +|.|.||+ +|+||+.+|++++++||++||+.|+ |||||||+|.++..++.+++
T Consensus         2 ~V~V~~~e~ie~alrrfkr~~~~~gil~e~r~r~-~yeKPs~krkrk~~~a~rr~   55 (58)
T TIGR00030         2 TVKVKEGESIDSALRRFKRKLEKEGILRELKKRR-YYEKPSERRRRKEKAAAKRI   55 (58)
T ss_pred             eeEeCCCCcHHHHHHHHHHHHHHcchHHHHHHHH-hhcCHHHHHHHHHHHHHHHH
Confidence            59999999 9999999999999999999999995 99999999976665555544

This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents.

>PRK00270 rpsU 30S ribosomal protein S21; Reviewed

Probab=99.69  E-value=7.1e-17  Score=108.68  Aligned_cols=55  Identities=31%  Similarity=0.441  Sum_probs=47.6

Q ss_pred             eEEEEecCC-HHHHHHHHHHHHhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHh
Q 033045           38 IRVKVFNGN-LEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIR   93 (128)
Q Consensus        38 I~V~VrDnN-vEqALrvLKrKMq~eGifRemK~r~~~yeKPSEKR~raRk~~err~R   93 (128)
                      +.|.|.||| +|+||+.+|++++++||++|++.++ |||||||+|.++..++.++.+
T Consensus         2 ~~V~V~~~e~ie~Alrrfkr~~~k~gil~e~r~r~-~yekPs~krkrk~~~a~rr~~   57 (64)
T PRK00270          2 PQVKVRENESIDKALRRFKRKVEKAGILRELRRRE-FYEKPSEKRKRKKAAARKRRR   57 (64)
T ss_pred             CeeEeCCCChHHHHHHHHHHHHHHcchHHHHHHHH-hhcCHHHHHHHHHHHHHHHHH
Confidence            469999999 9999999999999999999999985 999999999766555555543

>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=2.1e-16  Score=108.85  Aligned_cols=61  Identities=36%  Similarity=0.437  Sum_probs=55.0

Q ss_pred             EEEEecCC-HHHHHHHHHHHHhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHhhHHHHHHHH
Q 033045           39 RVKVFNGN-LEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLK  102 (128)
Q Consensus        39 ~V~VrDnN-vEqALrvLKrKMq~eGifRemK~r~~~yeKPSEKR~raRk~~err~Rs~elarKLk  102 (128)
                      +|.|++|| +|+||+.+|++++.+||++|++.|. ||||||+++  ++++++++.|..+.+.+.+
T Consensus         3 ~v~V~ene~~d~ALrrFKr~~~k~gil~e~k~r~-~yEkPs~kr--krK~a~a~kr~~k~~~k~~   64 (67)
T COG0828           3 QVKVRENEPLDKALRRFKRKVEKEGILREMKERE-FYEKPSEKR--KRKKAAARKRKFKRLRKEQ   64 (67)
T ss_pred             eeeecCCChHHHHHHHHHHHHHHHHHHHHHHHHH-hccCchHHH--HHHHHHHHHHHHHHHHHHh
Confidence            59999999 9999999999999999999999995 999999999  6888888888887776654

>PF01165 Ribosomal_S21: Ribosomal protein S21; InterPro: IPR001911 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.44  E-value=1.4e-16  Score=103.06  Aligned_cols=55  Identities=33%  Similarity=0.433  Sum_probs=45.3

Q ss_pred             eEEEEecCC-HHHHHHHHHHHHhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHh
Q 033045           38 IRVKVFNGN-LEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIR   93 (128)
Q Consensus        38 I~V~VrDnN-vEqALrvLKrKMq~eGifRemK~r~~~yeKPSEKR~raRk~~err~R   93 (128)
                      |.|.|.||+ +|+||+.|+++|+++||.++++.++ |||||||+|.++++++.+++.
T Consensus         1 v~V~V~~~~~~e~Alrr~~r~~~~~gi~~~~r~r~-~yekps~kRkrk~~~~~rr~~   56 (57)
T PF01165_consen    1 VTVKVRDGEDVERALRRFKRKVRRNGILKELRKRR-FYEKPSEKRKRKRSERWRRRF   56 (57)
T ss_dssp             ---EEESSSSSSSSSGTTCCTSSTTHHHTTTSSSB--SSSCCCCTTHCCCCCTHHHH
T ss_pred             CeeecCCCCCHHHHHHHHHHHHHHcChHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh
Confidence            569999887 9999999999999999999999985 999999999877766666543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryote ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S21 contains 55-70 amino acid residues, and has only been found in eubacteria to date, though it has been reported that plant chloroplasts and mammalian mitochondria contain ribosomal subunit protein S21. Experimental evidence has revealed that S21 is well exposed on the surface of the Escherichia coli ribosome [], and is one of the 'split proteins': these are a discrete group that are selectively removed from 30S subunits under low salt conditions and are required for the formation of activated 30S reconstitution intermediate (RI*) particles.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2VHO_U 3J18_U 2AVY_U 3OFO_U 3OFP_U 2WWL_U 3J0X_X 3IZV_Y 3ORA_U 3IZW_Y ....

>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function

Probab=80.62  E-value=1.9  Score=27.34  Aligned_cols=19  Identities=21%  Similarity=0.270  Sum_probs=17.3

Q ss_pred             eEEEEecCCHHHHHHHHHH
Q 033045           38 IRVKVFNGNLEQALSWMQR   56 (128)
Q Consensus        38 I~V~VrDnNvEqALrvLKr   56 (128)
                      ++|.|.+.|+|+|..+|+.
T Consensus        46 ~~v~V~~~d~~~A~~il~~   64 (67)
T PF09413_consen   46 VEVYVPEEDYERAREILEE   64 (67)
T ss_dssp             EEEEEEGGGHHHHHHHHHH
T ss_pred             eEEEECHHHHHHHHHHHHH
Confidence            8899999999999999863

; PDB: 2HFV_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
3r8n_U	51	30S ribosomal protein S21; protein biosynthesis, R	99.55
3i1m_U	71	30S ribosomal protein S21; ribosome structure, pro	99.5
3bbn_U	190	Ribosomal protein S21; small ribosomal subunit, sp	99.35

>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U 2vho_U 2vhp_U 3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U 3i1o_U 3i1q_U 3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y* 3kc4_U 3or9_U 3ora_U ...

Probab=99.50  E-value=3.7e-17  Score=111.67  Aligned_cols=55  Identities=20%  Similarity=0.281  Sum_probs=44.5

Q ss_pred             EEEEecC-CHHHHHHHHHHHHhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHhhHH
Q 033045           39 RVKVFNG-NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQD   96 (128)
Q Consensus        39 ~V~VrDn-NvEqALrvLKrKMq~eGifRemK~r~~~yeKPSEKR~raRk~~err~Rs~e   96 (128)
                      +|.|.|| |+|+||+.+|++++.+||++|++.|+ |||||||+|.  ++..++..|..+
T Consensus         3 ~V~V~enE~ie~ALRrfKR~~~k~Gil~e~Rrr~-~yEKPs~kRk--rk~~~a~kR~~k   58 (71)
T 3i1m_U            3 VIKVRENEPFDVALRRFKRSCEKAGVLAEVRRRE-FYEKPTTERK--RAKASAVKRHAK   58 (71)
T ss_dssp             -CEEECCSSCCSCCCTTTTSSSTHHHHTTSSSCC-CSSSHHHHHH--HHHHTSCC----
T ss_pred             eeEeCCCCCHHHHHHHHHHHHHHccHHHHHHHHH-hccCHHHHHH--HHHHHHHHHHHH
Confidence            5899999 89999999999999999999999995 9999999995  555555555444

>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.35  E-value=2.7e-15  Score=118.78  Aligned_cols=56  Identities=18%  Similarity=0.272  Sum_probs=44.4

Q ss_pred             eEEEEecC-CHHHHHHHHHHHHhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHhh
Q 033045           38 IRVKVFNG-NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRS   94 (128)
Q Consensus        38 I~V~VrDn-NvEqALrvLKrKMq~eGifRemK~r~~~yeKPSEKR~raRk~~err~Rs   94 (128)
                      ++|.|+|| ++|+|||.+||+++++||++|+|+|+ |||||||+|+++..++.+|.++
T Consensus        97 ~~V~VkeNE~iE~ALRRFKRkveKeGIlrElRrRr-~YEKPSeKRKRK~~eA~rR~rK  153 (190)
T 3bbn_U           97 VQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRR-FFENTQDVRKRKTREAAKRNRR  153 (190)
T ss_dssp             CCCCCCCCSSCCCCCCSSSTTTTTTHHHHSSSSCC-CTTTTTTHHHHHHHHTTC----
T ss_pred             cEEEecCCCCHHHHHHHHHHHHHHccHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHH
Confidence            45999987 68999999999999999999999995 9999999996554444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00