Citrus Sinensis ID: 033046

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MAASAEEERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSCSLLN
Secondary Structure (PSIPRED)
cccccccccccEEEEEccHHHHHHHHHccccccccccccccEEEccccccHHHHHHHHcccccccEEEEEEccccccccEEEEEcccccccEEEccccccccccccccEEEEEEEccccccEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEccHHHHHHHHHccccccccccccccEEEEccHHHHHHHHHHHHHHccccEEEEEEcHHHHccccEEEcccccccccccccccEEcccccHHHEEEEcccccccccEEEcccc
Coil and Loop (DISEMBL)
MAASAEEERGEFVYRISTASEWEELQKngstfggeldkssgcfhlskldqvqptlqnfflnskEDLYLLQIGAKKLGDGLIYELVdglnsfphfygpsrsftplpldvvtkadklslsdgrfscslln
Flexible Loop (DISEMBL)
maasaeeergefvyristasEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKAdklslsdgrfscslln
Low Complexity Region (SEG)
MAASAEEERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSCSLLN
Disordered region (IsUnstruct)
***********FVYRIST*********************SGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKA****************
Disordered Region (DISOPRED)
*************YRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSCSLLN
Disordered Region (DISEMBL)
**********EFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSCSLLN
Disordered Region (DISPRO)
********RGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSCSLLN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAASAEEERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSCSLLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
351726856	120	uncharacterized protein LOC100305709 [Gl	0.921	0.983	0.813	2e-50
357511445	120	hypothetical protein MTR_7g109980 [Medic	0.921	0.983	0.822	2e-50
388507456	138	unknown [Lotus japonicus]	0.968	0.898	0.766	2e-49
356571011	123	PREDICTED: uncharacterized protein LOC10	0.921	0.959	0.796	1e-48
224064659	134	predicted protein [Populus trichocarpa]	0.906	0.865	0.810	6e-48
255548343	131	conserved hypothetical protein [Ricinus	0.914	0.893	0.743	9e-47
225437669	129	PREDICTED: uncharacterized protein LOC10	0.914	0.906	0.743	1e-46
449511303	132	PREDICTED: uncharacterized LOC101207691	0.992	0.962	0.694	2e-45
449466243	132	PREDICTED: uncharacterized protein LOC10	0.992	0.962	0.694	2e-45
297809971	122	predicted protein [Arabidopsis lyrata su	0.914	0.959	0.700	9e-44

>gi|351726856|ref|NP_001235605.1| uncharacterized protein LOC100305709 [Glycine max] gi|255626377|gb|ACU13533.1| unknown [Glycine max]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/118 (81%), Positives = 107/118 (90%)

Query: 11  EFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQ 70
           E VYRISTA EWEELQ NGS+FGG+LDKSS   HLSKLDQV+ TL+NFFLNSKE+LYLLQ
Sbjct: 3   ELVYRISTAKEWEELQSNGSSFGGDLDKSSAFIHLSKLDQVRSTLENFFLNSKEELYLLQ 62

Query: 71  IGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSCSLLN 128
           I AKKLGDGL+YE+VDG NSFPHFYGPSRSF PLPLD VTKA+KL+L+DGRFSCSLL+
Sbjct: 63  IDAKKLGDGLVYEIVDGKNSFPHFYGPSRSFVPLPLDAVTKAEKLTLTDGRFSCSLLD 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511445|ref|XP_003626011.1| hypothetical protein MTR_7g109980 [Medicago truncatula] gi|355501026|gb|AES82229.1| hypothetical protein MTR_7g109980 [Medicago truncatula] gi|388506772|gb|AFK41452.1| unknown [Medicago truncatula]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/118 (82%), Positives = 109/118 (92%)

Query: 11  EFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQ 70
           +FVYRISTA EWEELQ+NGSTFGGELDKSS   HLSKL+QV+ TL NFFLNSK++LYLLQ
Sbjct: 3   DFVYRISTAKEWEELQRNGSTFGGELDKSSSFIHLSKLEQVRSTLDNFFLNSKDELYLLQ 62

Query: 71  IGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSCSLLN 128
           I AKKLGDGL+YE+VDG NSFPHFYGPSRSF PLPLDVVTKA++LSLS+GRFSCSLL+
Sbjct: 63  IDAKKLGDGLVYEIVDGSNSFPHFYGPSRSFIPLPLDVVTKAEELSLSNGRFSCSLLD 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507456|gb|AFK41794.1| unknown [Lotus japonicus]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/124 (76%), Positives = 108/124 (87%)

Query: 5   AEEERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKE 64
           A++  G FVYRISTA EWEELQ NGSTFGG LDKSS   HLSKLDQV+ TL+ F++N KE
Sbjct: 11  AKKMSGIFVYRISTAKEWEELQANGSTFGGNLDKSSAFIHLSKLDQVRSTLERFYMNCKE 70

Query: 65  DLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSC 124
           +LYLLQI AKKLGDGL+YE+VDG NSFPHFYGPSRSF+PL LDVVTKA+KLSLSDGRF+C
Sbjct: 71  ELYLLQIDAKKLGDGLVYEMVDGSNSFPHFYGPSRSFSPLSLDVVTKAEKLSLSDGRFTC 130

Query: 125 SLLN 128
            LL+
Sbjct: 131 CLLD 134

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571011|ref|XP_003553675.1| PREDICTED: uncharacterized protein LOC100778297 [Glycine max]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 106/118 (89%)

Query: 11  EFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQ 70
           E VYRIST +EWEELQ NGS+ GG+LDKSSG  HLSKLDQV+ TL+NFFLN KE+LYLL+
Sbjct: 3   ELVYRISTTNEWEELQSNGSSLGGDLDKSSGFIHLSKLDQVRSTLENFFLNCKEELYLLR 62

Query: 71  IGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSCSLLN 128
           I AKKLGDGL+YE+VDG NSFPHFYGPSRSF PLPLD VTKA+KL+LSDGRFSCSLL+
Sbjct: 63  IDAKKLGDGLVYEIVDGSNSFPHFYGPSRSFIPLPLDAVTKAEKLTLSDGRFSCSLLD 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064659|ref|XP_002301533.1| predicted protein [Populus trichocarpa] gi|222843259|gb|EEE80806.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 94/116 (81%), Positives = 103/116 (88%)

Query: 13  VYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIG 72
           VYRIST  EWEELQ+NGS FGG+LDKSSG  HLSKLDQV  TLQNFFLN+K DLYLLQI 
Sbjct: 19  VYRISTDKEWEELQRNGSCFGGQLDKSSGFIHLSKLDQVMSTLQNFFLNTKVDLYLLQID 78

Query: 73  AKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSCSLLN 128
           AKKLGDGLI E+VDG N+FPHFYGPSRSF+PLPLDVV KA+KL L+DG+FSCSLLN
Sbjct: 79  AKKLGDGLINEVVDGTNNFPHFYGPSRSFSPLPLDVVIKAEKLVLADGQFSCSLLN 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548343|ref|XP_002515228.1| conserved hypothetical protein [Ricinus communis] gi|223545708|gb|EEF47212.1| conserved hypothetical protein [Ricinus communis]

 Score =  191 bits (485), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 106/117 (90%)

Query: 12  FVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQI 71
           +VYRISTA EWEELQK+GS FGG+LDKSSG  HLSKLDQV+ TLQNFFLN+  +LYLLQ+
Sbjct: 15  YVYRISTAKEWEELQKDGSIFGGDLDKSSGFIHLSKLDQVRSTLQNFFLNTTLELYLLQV 74

Query: 72  GAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSCSLLN 128
            AKKLGDGL+YE+VDG+NSFPHFYGPS S+ PLPLD VTKA+K+++S+G+F+C+LLN
Sbjct: 75  DAKKLGDGLVYEVVDGINSFPHFYGPSGSYIPLPLDAVTKAEKITISNGQFNCNLLN 131

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437669|ref|XP_002279323.1| PREDICTED: uncharacterized protein LOC100262326 [Vitis vinifera] gi|297744029|emb|CBI36999.3| unnamed protein product [Vitis vinifera]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 101/117 (86%)

Query: 12  FVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQI 71
           FVYRISTA EWEELQK G+ +GG+LDKS+GC HLS L QVQ TLQNFF+ ++ +LYLLQ+
Sbjct: 13  FVYRISTAQEWEELQKAGACYGGQLDKSTGCIHLSNLHQVQSTLQNFFMKTQAELYLLQV 72

Query: 72  GAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSCSLLN 128
            +KKLGDGLIYE VD  N FPHFYGPSRSF PLPLD VTKA+K++LSDG+FSCSLLN
Sbjct: 73  DSKKLGDGLIYERVDECNVFPHFYGPSRSFIPLPLDAVTKAEKITLSDGKFSCSLLN 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511303|ref|XP_004163920.1| PREDICTED: uncharacterized LOC101207691 [Cucumis sativus]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/131 (69%), Positives = 104/131 (79%), Gaps = 4/131 (3%)

Query: 1   MAASAEEERG----EFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQ 56
           MA   EE+      EFVYRIST+ EW+E  + G   GG LDKSSG  HLS LDQVQ TLQ
Sbjct: 1   MADQNEEQNSAPTQEFVYRISTSKEWDESHRLGHICGGHLDKSSGFIHLSNLDQVQSTLQ 60

Query: 57  NFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLS 116
           NFFLN K++LYLLQI AKKLGDGLIYELVDG NSFPHFYGPSRSF+P+P+D VT +DK++
Sbjct: 61  NFFLNIKDELYLLQIEAKKLGDGLIYELVDGCNSFPHFYGPSRSFSPIPMDAVTNSDKIT 120

Query: 117 LSDGRFSCSLL 127
            SDGRF+CSLL
Sbjct: 121 FSDGRFACSLL 131

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466243|ref|XP_004150836.1| PREDICTED: uncharacterized protein LOC101207691 [Cucumis sativus]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/131 (69%), Positives = 104/131 (79%), Gaps = 4/131 (3%)

Query: 1   MAASAEEERG----EFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQ 56
           MA   EE+      EFVYRIST+ EW+E  + G   GG LDKSSG  HLS LDQVQ TLQ
Sbjct: 1   MADQNEEQNSAPTEEFVYRISTSKEWDESHRLGHICGGHLDKSSGFIHLSNLDQVQSTLQ 60

Query: 57  NFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLS 116
           NFFLN K++LYLLQI AKKLGDGLIYELVDG NSFPHFYGPSRSF+P+P+D VT +DK++
Sbjct: 61  NFFLNIKDELYLLQIEAKKLGDGLIYELVDGCNSFPHFYGPSRSFSPIPMDAVTNSDKIT 120

Query: 117 LSDGRFSCSLL 127
            SDGRF+CSLL
Sbjct: 121 FSDGRFACSLL 131

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809971|ref|XP_002872869.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318706|gb|EFH49128.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  181 bits (459), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 82/117 (70%), Positives = 98/117 (83%)

Query: 11  EFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQ 70
           +F+YRIST  EWEE QKNGS+FG E+DKS+  +HLSKLDQVQ TL+NFFLN KEDLYLLQ
Sbjct: 5   DFIYRISTEQEWEEFQKNGSSFGAEIDKSTCYYHLSKLDQVQLTLKNFFLNVKEDLYLLQ 64

Query: 71  IGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSCSLL 127
           +  KKLGDGLIYE VD +NSFPHFYGP ++F PLPLD V KA+KL+ ++G F+CS L
Sbjct: 65  VDPKKLGDGLIYEAVDEVNSFPHFYGPEKTFVPLPLDSVVKAEKLTFTNGNFTCSFL 121

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:1005716189	122	AT4G01897 "AT4G01897" [Arabido	0.937	0.983	0.658	5.3e-40
UNIPROTKB|Q5LPE3	112	SPO2905 "Uncharacterized prote	0.640	0.732	0.349	2e-08
TIGR_CMR|SPO_2905	112	SPO_2905 "conserved hypothetic	0.640	0.732	0.349	2e-08
UNIPROTKB|Q0BWI3	114	HNE_3489 "Putative uncharacter	0.671	0.754	0.333	2.1e-06

TAIR|locus:1005716189 AT4G01897 "AT4G01897" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 81/123 (65%), Positives = 99/123 (80%)

Query:     5 AEEERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKE 64
             AEEE   F+YRIST  EWEE +KNGS++G E+DKS+  +HLSKLDQVQ TL+NFF++ KE
Sbjct:     2 AEEE---FIYRISTEQEWEEFKKNGSSYGAEIDKSTCYYHLSKLDQVQLTLKNFFVDVKE 58

Query:    65 DLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLSDGRFSC 124
              LYLLQ+  KKLGDGLIYE VD +NSFPHFYGP ++F PLPLD V KA+KL+  +G F+C
Sbjct:    59 YLYLLQVDPKKLGDGLIYEAVDEVNSFPHFYGPDKTFVPLPLDSVVKAEKLTFINGNFTC 118

Query:   125 SLL 127
             S L
Sbjct:   119 SFL 121

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q5LPE3 SPO2905 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 29/83 (34%), Positives = 42/83 (50%)

Query:    13 VYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIG 72
             +Y+I  A EW  L+++G + G  +D + G  H S  +Q   T    F  + E L LL   
Sbjct:     3 IYKIFRADEWAALERDGQSVGAPVDLADGFVHFSTAEQAGETAAKHFAGA-EGLVLLACE 61

Query:    73 AKKLGDGLIYELVDGLNSFPHFY 95
             A  +GD L +E+  G   FPH Y
Sbjct:    62 ADAMGDVLKWEVSRGGALFPHLY 84

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2905 SPO_2905 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 29/83 (34%), Positives = 42/83 (50%)

Query:    13 VYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIG 72
             +Y+I  A EW  L+++G + G  +D + G  H S  +Q   T    F  + E L LL   
Sbjct:     3 IYKIFRADEWAALERDGQSVGAPVDLADGFVHFSTAEQAGETAAKHFAGA-EGLVLLACE 61

Query:    73 AKKLGDGLIYELVDGLNSFPHFY 95
             A  +GD L +E+  G   FPH Y
Sbjct:    62 ADAMGDVLKWEVSRGGALFPHLY 84

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0BWI3 HNE_3489 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 30/90 (33%), Positives = 45/90 (50%)

Query:     8 ERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLY 67
             ER  FVY++ T  EW+  +  G      LD++ G  HLS   Q+  T +  F + +  + 
Sbjct:     2 ERA-FVYKLLTEEEWQAAESVGHA-ASALDQADGYIHLSTRAQLAETARRHF-SGRGRIR 58

Query:    68 LLQIGAKKLGDGLIYELVDGLNSFPHFYGP 97
             LL+  +  L   L +E   G + FPH YGP
Sbjct:    59 LLEFDSAVLAP-LRWEPSRGGDIFPHLYGP 87


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.135   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       128   0.00091  102 3  11 22  0.43    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  570 (61 KB)
  Total size of DFA:  130 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.10u 0.10s 13.20t   Elapsed:  00:00:01
  Total cpu time:  13.10u 0.10s 13.20t   Elapsed:  00:00:01
  Start:  Fri May 10 12:12:46 2013   End:  Fri May 10 12:12:47 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.II.532.1	hypothetical protein (119 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.8904000201	Predicted protein (120 aa)	•								0.484

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
pfam06108	92	pfam06108, DUF952, Protein of unknown function (DU	6e-26
COG3502	115	COG3502, COG3502, Uncharacterized protein conserve	4e-21

>gnl|CDD|191453 pfam06108, DUF952, Protein of unknown function (DUF952)

 Score = 93.0 bits (232), Expect = 6e-26
 Identities = 39/97 (40%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 16  ISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKK 75
           I+ A EWE  ++ G   G  LD + G  HLS  +QV  T   FF   ++DL LL I   +
Sbjct: 1   IAPAEEWEAAERTGEYAGAPLDLADGFIHLSTAEQVAETAARFFAG-QDDLLLLAIDPAR 59

Query: 76  LGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKA 112
           LG  L +E   G   FPH YG      PLPLD V   
Sbjct: 60  LGAALRWEPSRGGELFPHLYG------PLPLDAVVWV 90

This family consists of several hypothetical bacterial and plant proteins of unknown function. Length = 92

>gnl|CDD|226033 COG3502, COG3502, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 81.3 bits (201), Expect = 4e-21
 Identities = 43/113 (38%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 12  FVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQI 71
            +Y+I+  + W   +  GS  G  +D + G  HLS   QV+ T        + DL LL I
Sbjct: 5   TIYKITPRALWAAARAAGSFEGASVDDADGFIHLSTAAQVRET-AARHFRGQADLLLLAI 63

Query: 72  GAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSL-SDGRFS 123
               LGD L YE   G   FPH YG      PLPLD VT    L L +DG F 
Sbjct: 64  DPAALGDELRYEPSRGGALFPHLYG------PLPLDAVTWVAPLPLGADGLFQ 110

Length = 115

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
COG3502	115	Uncharacterized protein conserved in bacteria [Fun	100.0
PF06108	93	DUF952: Protein of unknown function (DUF952); Inte	100.0
PF01885	186	PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA	95.11
COG1859	211	KptA RNA:NAD 2'-phosphotransferase [Translation, r	94.62
PRK00819	179	RNA 2'-phosphotransferase; Reviewed	94.1

>COG3502 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=2.6e-42  Score=248.27  Aligned_cols=110  Identities=40%  Similarity=0.648  Sum_probs=106.2

Q ss_pred             CCceEEEecChhhHHHHHhCCCCCCCCCCCCCCeEeccchhcHHHHHHhhcCCCCCcEEEEEEcCCCCCCceEEeecCCC
Q 033046            9 RGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGL   88 (128)
Q Consensus         9 ~~~~iyhI~~~~~W~~a~~~G~~~~~~ld~~dGFIH~St~~Qv~~va~~ff~~~~~~lvlL~ID~~~L~~~l~wE~~~gg   88 (128)
                      .+.+||||++++.|++|++.|+|.++++|.+|||||+||++||..||+|+|++ |.+|+||.||+++|+++||||+++||
T Consensus         2 ~~~~iykI~~~~~W~~A~~~G~f~~~svd~~dGfIH~St~~Qv~~tAar~f~G-Q~dLlLl~iD~aaLg~~lryE~srgg   80 (115)
T COG3502           2 SPATIYKITPRALWAAARAAGSFEGASVDDADGFIHLSTAAQVRETAARHFRG-QADLLLLAIDPAALGDELRYEPSRGG   80 (115)
T ss_pred             CcceeeeeCCHHHHHHHHHcCCcCCCCcccccceEEechHHHHHHHHHHHhcC-CcceEEEEecHHHcCCcceeecCCCC
Confidence            46899999999999999999999999998899999999999999999999999 99999999999999999999999999


Q ss_pred             CCCceeeCCCCCCCCCCccceEEEEEeec-CCCeeeec
Q 033046           89 NSFPHFYGPSRSFTPLPLDVVTKADKLSL-SDGRFSCS  125 (128)
Q Consensus        89 ~~FPHiYG~~~~~~~Lp~~aV~~v~~l~~-~dG~f~~~  125 (128)
                      .+|||||||      ||++||++|.+++. .||.|.++
T Consensus        81 ~lFPHLYgp------L~l~AV~~~~pl~l~~DG~~~~p  112 (115)
T COG3502          81 ALFPHLYGP------LPLDAVTWVAPLPLGADGLFQFP  112 (115)
T ss_pred             ccccccccc------cchhHheecccCCCCCCCCCCCC
Confidence            999999998      99999999999995 69999876

>PF06108 DUF952: Protein of unknown function (DUF952); InterPro: IPR009297 This family consists of several hypothetical bacterial and plant proteins of unknown function

Probab=100.00  E-value=8.8e-39  Score=224.33  Aligned_cols=92  Identities=48%  Similarity=0.766  Sum_probs=79.4

Q ss_pred             ecChhhHHHHHhCCCCCCCCCCCCCCeEeccchhcHHHHHHhhcCCCCCcEEEEEEcCCCCCCceEEeecC-CCCCCcee
Q 033046           16 ISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVD-GLNSFPHF   94 (128)
Q Consensus        16 I~~~~~W~~a~~~G~~~~~~ld~~dGFIH~St~~Qv~~va~~ff~~~~~~lvlL~ID~~~L~~~l~wE~~~-gg~~FPHi   94 (128)
                      |+++++|++++..|.|.++++|++|||||||+++||..|+++||++ +++|+||+||+++|++.||||+++ +|++||||
T Consensus         1 I~~~~~W~~a~~~g~y~~~~ld~~dGFIH~St~~Qv~~ta~~ff~~-~~~l~lL~id~~~l~~~l~wE~~~~~g~~FPHl   79 (93)
T PF06108_consen    1 ILTAEEWEAAQASGEYPGSSLDTSDGFIHLSTAEQVPGTANRFFAG-QEDLVLLKIDPDKLGAELRWEPSEGGGELFPHL   79 (93)
T ss_dssp             EEEHHHHHHHHHHSEE---HHHHHHTSEE-EEHHHHHHHHHHHSTT---SEEEEEEESGGGTTTEEEEEGG-GGSEEEEE
T ss_pred             CCCHHHHHHhHHcCCCCCCccccCCCEEEcCCHHHHHHHHHHHcCC-CCCEEEEEEeHHHcCCcceeccCCCCCCcCCcC
Confidence            7899999999999999999999679999999999999999999999 999999999999999999999987 67999999


Q ss_pred             eCCCCCCCCCCccceEEEEE
Q 033046           95 YGPSRSFTPLPLDVVTKADK  114 (128)
Q Consensus        95 YG~~~~~~~Lp~~aV~~v~~  114 (128)
                      ||+      ||++||++|.+
T Consensus        80 Yg~------l~~~aVv~v~~   93 (93)
T PF06108_consen   80 YGP------LPLDAVVEVKE   93 (93)
T ss_dssp             SS-------EEGGGEEE---
T ss_pred             CCC------CChHHHhhccC
Confidence            998      99999999863

; PDB: 2O0Q_A 2O0P_A 2JQN_A.

>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate

Probab=95.11  E-value=0.027  Score=43.83  Aligned_cols=74  Identities=22%  Similarity=0.234  Sum_probs=42.6

Q ss_pred             cccCCCceEEEecChhhHHHHHhCCCCCCCCCCCCCCeEeccchhcHH-HHHHhhcCCCCCcEEEEEEcCCC-CCCceEE
Q 033046            5 AEEERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQ-PTLQNFFLNSKEDLYLLQIGAKK-LGDGLIY   82 (128)
Q Consensus         5 ~~~~~~~~iyhI~~~~~W~~a~~~G~~~~~~ld~~dGFIH~St~~Qv~-~va~~ff~~~~~~lvlL~ID~~~-L~~~l~w   82 (128)
                      .++..|..+||-+..+.|+..++.| +.+.    .-.+||||+...-. .+..|     ....++|.||..+ +.+.++|
T Consensus       100 ~~~~~p~~lyHGT~~~~~~~I~~~G-L~~m----~R~hVHls~~~~~a~~sG~R-----~~~~V~i~Id~~~a~~~Gi~f  169 (186)
T PF01885_consen  100 PEEEPPPILYHGTYRKAWPSILEEG-LKPM----GRNHVHLSTGPETAVISGMR-----RSCPVLIYIDAAKALEDGIKF  169 (186)
T ss_dssp             -SS---SEEEE--BGGGHHHHHHH--B-------SSSSEEEES-HHHHHHHHTT-----SSSBEEEEEEHHHHHHTT---
T ss_pred             cccCCCCEEEEccchhhHHHHHHhC-CCCC----CCCEEEEeeccCCceeecCC-----CCCeEEEEEcHHHHHHCCCeE
Confidence            4556789999999999999999999 5554    24589999773333 33333     2358999999965 4667888


Q ss_pred             eecCCC
Q 033046           83 ELVDGL   88 (128)
Q Consensus        83 E~~~gg   88 (128)
                      -.+.+|
T Consensus       170 ~~s~n~  175 (186)
T PF01885_consen  170 YRSSNG  175 (186)
T ss_dssp             EE-SSS
T ss_pred             EEeCCc
Confidence            776544

Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.

>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]

Probab=94.62  E-value=0.11  Score=41.82  Aligned_cols=75  Identities=17%  Similarity=0.128  Sum_probs=53.5

Q ss_pred             cccCCCceEEEecChhhHHHHHhCCCCCCCCCCCCCCeEeccchh-cHHHHHHhhcCCCCCcEEEEEEcCCCCC-CceEE
Q 033046            5 AEEERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLD-QVQPTLQNFFLNSKEDLYLLQIGAKKLG-DGLIY   82 (128)
Q Consensus         5 ~~~~~~~~iyhI~~~~~W~~a~~~G~~~~~~ld~~dGFIH~St~~-Qv~~va~~ff~~~~~~lvlL~ID~~~L~-~~l~w   82 (128)
                      .+...|..+||=+.++.|....+.|-++ .  +  --+||||+.. .-..|+.+ ..   +..|+|.||..++- +.++.
T Consensus       115 ~~~~~p~~LyhGTs~~~l~~I~~~Gi~P-m--~--R~~VHLS~~~~~A~~vg~r-h~---~~pVvL~IDa~~l~~~G~~~  185 (211)
T COG1859         115 PEAEPPAVLYHGTSPEFLPSILEEGLKP-M--K--RRHVHLSADYETAKQVGLR-HS---GSPVVLEIDAESLREDGYKF  185 (211)
T ss_pred             CCCCCCcEEEecCChhhhHHHHHhcCcc-c--c--CceEEecCCHHHHHHHhhc-cC---CCcEEEEEehHHHHhCCceE
Confidence            3456778999999999999999999543 3  2  3479999644 44445553 22   36899999998874 46776


Q ss_pred             eecCCC
Q 033046           83 ELVDGL   88 (128)
Q Consensus        83 E~~~gg   88 (128)
                      -.+.++
T Consensus       186 ~rs~n~  191 (211)
T COG1859         186 YRSENG  191 (211)
T ss_pred             EEcCCc
Confidence            666544

>PRK00819 RNA 2'-phosphotransferase; Reviewed

Probab=94.10  E-value=0.049  Score=42.41  Aligned_cols=72  Identities=13%  Similarity=0.151  Sum_probs=52.2

Q ss_pred             cCCCceEEEecChhhHHHHHhCCCCCCCCCCCCCCeEeccchh-cHHHHHHhhcCCCCCcEEEEEEcCCCC-CCceEEee
Q 033046            7 EERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLD-QVQPTLQNFFLNSKEDLYLLQIGAKKL-GDGLIYEL   84 (128)
Q Consensus         7 ~~~~~~iyhI~~~~~W~~a~~~G~~~~~~ld~~dGFIH~St~~-Qv~~va~~ff~~~~~~lvlL~ID~~~L-~~~l~wE~   84 (128)
                      ...|..+||=+....|+...+.| +.+.    .--+||||+.. +-..+..|.     +..++|.||..+. ++.+++-.
T Consensus        91 ~~~P~~lyHGT~~~~~~~I~~~G-L~pm----~R~hVHLs~~~~~a~~~G~R~-----~~~vil~Id~~~~~~~Gi~f~~  160 (179)
T PRK00819         91 DTPPAVLYHGTSSEELDSILEEG-LKPM----KRHYVHLSTDIETAREVGARH-----GSPVILEVDAECMRKRGIKFYK  160 (179)
T ss_pred             CCCCceeEeCCCHHHHHHHHHhC-CCcc----CCCeEEecCCcccCeEEcccC-----CCeEEEEEeHHHHHhCCCEEEE
Confidence            34678999999999999999988 4444    24589999743 222334443     3689999999765 66788877


Q ss_pred             cCCC
Q 033046           85 VDGL   88 (128)
Q Consensus        85 ~~gg   88 (128)
                      +.+|
T Consensus       161 s~n~  164 (179)
T PRK00819        161 AENG  164 (179)
T ss_pred             eCCC
Confidence            7665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	128
2o0q_A	115	X-Ray Crystal Structure Of Protein Cc0527 From Caul		4e-09
2jqn_A	122	Solution Nmr Structure Of Cc0527 From Caulobacter C		4e-09
2o0p_A	122	X-Ray Crystal Structure Of Protein Cc0527 (V27m L66		3e-08

>pdb|2O0Q|A Chain A, X-Ray Crystal Structure Of Protein Cc0527 From Caulobacter Crescentus. Northeast Structural Genomics Consortium Target Ccr55 Length = 115

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 12 FVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQI 71
           +Y+I + +EW+  +  G   G  +D + G  HLS  +Q Q T   +F   + +L LL +
Sbjct: 3  LIYKILSRAEWDAAKAQGRFEGSAVDLADGFIHLSAGEQAQETAAKWF-RGQANLVLLAV 61
Query: 72 GAKKLGDGLIYELVDGLNSFPHFYGP 97
           A+ LG+ L +E   G   FPH Y P
Sbjct: 62 EAEPLGEDLKWEASRGGARFPHLYRP 87

>pdb|2JQN|A Chain A, Solution Nmr Structure Of Cc0527 From Caulobacter Crescentus. Northeast Structural Genomics Target Ccr55 Length = 122

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 12 FVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQI 71
           +Y+I + +EW+  +  G   G  +D + G  HLS  +Q Q T   +F   + +L LL +
Sbjct: 3  LIYKILSRAEWDAAKAQGRFEGSAVDLADGFIHLSAGEQAQETAAKWF-RGQANLVLLAV 61
Query: 72 GAKKLGDGLIYELVDGLNSFPHFYGP 97
           A+ LG+ L +E   G   FPH Y P
Sbjct: 62 EAEPLGEDLKWEASRGGARFPHLYRP 87

>pdb|2O0P|A Chain A, X-Ray Crystal Structure Of Protein Cc0527 (V27m L66M Double Mutant) From Caulobacter Crescentus. Northeast Structural Genomics Consortium Target Ccr55 Length = 122

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 12 FVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQI 71
           +Y+I + +EW+  +  G   G   D + G  HLS  +Q Q T   +F   + +L LL +
Sbjct: 3  LIYKILSRAEWDAAKAQGRFEGSAXDLADGFIHLSAGEQAQETAAKWF-RGQANLVLLAV 61
Query: 72 GAKKLGDGLIYELVDGLNSFPHFYGP 97
           A+  G+ L +E   G   FPH Y P
Sbjct: 62 EAEPXGEDLKWEASRGGARFPHLYRP 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
2o0q_A	115	Hypothetical protein CC0527; PSI, protein structur	4e-28

>2o0q_A Hypothetical protein CC0527; PSI, protein structure initiative, northeast structural genomics consortium, NESG, structural genomics; 1.80A {Caulobacter vibrioides} SCOP: d.166.1.7 PDB: 2jqn_A 2o0p_A Length = 115

 Score = 98.4 bits (245), Expect = 4e-28
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 8/113 (7%)

Query: 11  EFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQ 70
             +Y+I + +EW+  +  G   G  +D + G  HLS  +Q Q T   +F   + +L LL 
Sbjct: 2   TLIYKILSRAEWDAAKAQGRFEGSAVDLADGFIHLSAGEQAQETAAKWFRG-QANLVLLA 60

Query: 71  IGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSL-SDGRF 122
           + A+ LG+ L +E   G   FPH Y       PL +  VT+   L L +DG  
Sbjct: 61  VEAEPLGEDLKWEASRGGARFPHLYR------PLLVSEVTREADLDLDADGVP 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
2o0q_A	115	Hypothetical protein CC0527; PSI, protein structur	100.0
1wfx_A	186	Probable RNA 2'-phosphotransferase; tRNA splicing,	91.35

>2o0q_A Hypothetical protein CC0527; PSI, protein structure initiative, northeast structural genomics consortium, NESG, structural genomics; 1.80A {Caulobacter vibrioides} SCOP: d.166.1.7 PDB: 2jqn_A 2o0p_A

Probab=100.00  E-value=1.1e-45  Score=267.35  Aligned_cols=108  Identities=33%  Similarity=0.588  Sum_probs=104.4

Q ss_pred             ceEEEecChhhHHHHHhCCCCCCCCCCCCCCeEeccchhcHHHHHHhhcCCCCCcEEEEEEcCCCCCCceEEeecCCCCC
Q 033046           11 EFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNS   90 (128)
Q Consensus        11 ~~iyhI~~~~~W~~a~~~G~~~~~~ld~~dGFIH~St~~Qv~~va~~ff~~~~~~lvlL~ID~~~L~~~l~wE~~~gg~~   90 (128)
                      ++||||+++++|++++++|.|+++++|++||||||||++||..|+++||++ +++|+||+||+++|+++||||++++|++
T Consensus         2 ~~Iy~I~~~~~W~~a~~~g~y~g~~ld~~dGFIH~St~~Qv~~ta~~~f~~-~~~L~lL~id~~~l~~~l~wE~~~~g~l   80 (115)
T 2o0q_A            2 TLIYKILSRAEWDAAKAQGRFEGSAVDLADGFIHLSAGEQAQETAAKWFRG-QANLVLLAVEAEPLGEDLKWEASRGGAR   80 (115)
T ss_dssp             CEEEEEEEHHHHHHHHHHTEECCCHHHHHHTSEECEEHHHHHHHHHHHCTT-CCSEEEEEEESGGGCTTEEEEECGGGCE
T ss_pred             CEEEEECCHHHHHHhHHcCCCCCccccccCCeEECCCHHHHHHHHHHHcCC-CCCEEEEEEcHHHCCCceEEecCCCCCc
Confidence            589999999999999999999999999889999999999999999999999 9999999999999999999999999999


Q ss_pred             CceeeCCCCCCCCCCccceEEEEEeec-CCCeeeec
Q 033046           91 FPHFYGPSRSFTPLPLDVVTKADKLSL-SDGRFSCS  125 (128)
Q Consensus        91 FPHiYG~~~~~~~Lp~~aV~~v~~l~~-~dG~f~~~  125 (128)
                      ||||||+      ||++||++|.++++ .||+|.++
T Consensus        81 FPHlYG~------L~~~aV~~v~~~~~~~dG~~~~p  110 (115)
T 2o0q_A           81 FPHLYRP------LLVSEVTREADLDLDADGVPQLG  110 (115)
T ss_dssp             EEEESSC------EEGGGEEEEEECCBCTTSCBCCH
T ss_pred             ccccCCC------CChHHeEEEEeeeECCCCcccCc
Confidence            9999998      99999999999997 69999875

>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5

Probab=91.35  E-value=0.24  Score=37.67  Aligned_cols=87  Identities=16%  Similarity=0.145  Sum_probs=58.5

Q ss_pred             cCCCceEEEecChhhHHHHHhCCCCCCCCCCCCCCeEeccchhcH-HHHHHhhcCCCCCcEEEEEEcCCCC-CCceEEee
Q 033046            7 EERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQV-QPTLQNFFLNSKEDLYLLQIGAKKL-GDGLIYEL   84 (128)
Q Consensus         7 ~~~~~~iyhI~~~~~W~~a~~~G~~~~~~ld~~dGFIH~St~~Qv-~~va~~ff~~~~~~lvlL~ID~~~L-~~~l~wE~   84 (128)
                      ...|..+||=+....|+...+.| +.+.    .--+||||+...- ..+..|. .   +..++|.||..+. .+.++|-.
T Consensus        88 ~~~P~~lyHGT~~~~~~~I~~~G-L~~m----~R~hVHLs~~~~~a~~vG~R~-~---~~~V~i~Id~~~a~~~Gi~fy~  158 (186)
T 1wfx_A           88 GEPPPILYHGTTEEALPLIMERG-IMRG----RRLKVHLTSSLEDAVSTGRRH-G---NLVAVLLVDVECLRRRGLKVER  158 (186)
T ss_dssp             SCCCSEEEECCBGGGHHHHHHHC-BCCC----SSSSEEEESCHHHHHHHHTTS-S---SSBEEEEEEHHHHHHTTCCCEE
T ss_pred             CCCCCEEEEeCCHHHHHHHHHhC-CCCC----CCCEEEEecCCCCCeEeeccC-C---CccEEEEEcHHHHHhCCCEEEE
Confidence            44568999999999999999999 4444    2457999974332 2334442 2   2578999998654 56788877


Q ss_pred             cCCC-CCCceeeCCCCCCCCCCccceEEE
Q 033046           85 VDGL-NSFPHFYGPSRSFTPLPLDVVTKA  112 (128)
Q Consensus        85 ~~gg-~~FPHiYG~~~~~~~Lp~~aV~~v  112 (128)
                      +.+| .+=+    .      +|.+-+..+
T Consensus       159 s~ngV~Lt~----~------VP~~y~~~v  177 (186)
T 1wfx_A          159 MSKTVYTVD----W------VPPECIAEV  177 (186)
T ss_dssp             CSSSEEEES----C------BCGGGEEEE
T ss_pred             eCCcEEEeC----C------cCHHHheec
Confidence            7666 3333    3      677766643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d2o0qa1	113	d.166.1.7 (A:2-114) Hypothetical protein CC0527 {C	3e-27

>d2o0qa1 d.166.1.7 (A:2-114) Hypothetical protein CC0527 {Caulobacter crescentus [TaxId: 155892]} Length = 113

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: CC0527-like
domain: Hypothetical protein CC0527
species: Caulobacter crescentus [TaxId: 155892]

 Score = 95.3 bits (237), Expect = 3e-27
 Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 12  FVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQI 71
            +Y+I + +EW+  +  G   G  +D + G  HLS  +Q Q T    +   + +L LL +
Sbjct: 2   LIYKILSRAEWDAAKAQGRFEGSAVDLADGFIHLSAGEQAQETA-AKWFRGQANLVLLAV 60

Query: 72  GAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDVVTKADKLSLS-DGRF 122
            A+ LG+ L +E   G   FPH Y       PL +  VT+   L L  DG  
Sbjct: 61  EAEPLGEDLKWEASRGGARFPHLYR------PLLVSEVTREADLDLDADGVP 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d2o0qa1	113	Hypothetical protein CC0527 {Caulobacter crescentu	100.0
d1wfxa_	180	Probable RNA 2'-phosphotransferase KptA {Aeropyrum	95.32

>d2o0qa1 d.166.1.7 (A:2-114) Hypothetical protein CC0527 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: CC0527-like
domain: Hypothetical protein CC0527
species: Caulobacter crescentus [TaxId: 155892]

Probab=100.00  E-value=5.4e-44  Score=255.68  Aligned_cols=108  Identities=33%  Similarity=0.588  Sum_probs=104.1

Q ss_pred             ceEEEecChhhHHHHHhCCCCCCCCCCCCCCeEeccchhcHHHHHHhhcCCCCCcEEEEEEcCCCCCCceEEeecCCCCC
Q 033046           11 EFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNS   90 (128)
Q Consensus        11 ~~iyhI~~~~~W~~a~~~G~~~~~~ld~~dGFIH~St~~Qv~~va~~ff~~~~~~lvlL~ID~~~L~~~l~wE~~~gg~~   90 (128)
                      .|||||+++++|++|++.|.|.++++|++|||||||+++||..||++||++ +++|+||+||+++|++.||||++++|++
T Consensus         1 t~Iyhi~~~~~W~~a~~~g~y~~~~ld~~dGFIH~St~~Ql~~ta~~~f~~-~~~lvlL~id~~~l~~~l~wE~~~~g~~   79 (113)
T d2o0qa1           1 TLIYKILSRAEWDAAKAQGRFEGSAVDLADGFIHLSAGEQAQETAAKWFRG-QANLVLLAVEAEPLGEDLKWEASRGGAR   79 (113)
T ss_dssp             CEEEEEEEHHHHHHHHHHTEECCCHHHHHHTSEECEEHHHHHHHHHHHCTT-CCSEEEEEEESGGGCTTEEEEECGGGCE
T ss_pred             CEEEEECCHHHHHHHHHCCCCcCCCccccCCeEECCCHHHHHHHHHHHhCC-CCCeEEEEEcHHHhCCCeEeccCCCCCc
Confidence            489999999999999999999999999889999999999999999999999 9999999999999999999999999999


Q ss_pred             CceeeCCCCCCCCCCccceEEEEEeec-CCCeeeec
Q 033046           91 FPHFYGPSRSFTPLPLDVVTKADKLSL-SDGRFSCS  125 (128)
Q Consensus        91 FPHiYG~~~~~~~Lp~~aV~~v~~l~~-~dG~f~~~  125 (128)
                      ||||||+      ||+++|++|.++++ .||.|.++
T Consensus        80 FPHlYG~------L~~~~V~~v~~l~~~~~G~~~lP  109 (113)
T d2o0qa1          80 FPHLYRP------LLVSEVTREADLDLDADGVPQLG  109 (113)
T ss_dssp             EEEESSC------EEGGGEEEEEECCBCTTSCBCCH
T ss_pred             cccccCC------CChHHeeEEEEeccCCCCCCcCC
Confidence            9999998      99999999999997 59999876

>d1wfxa_ d.166.1.5 (A:) Probable RNA 2'-phosphotransferase KptA {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Tpt1/KptA
domain: Probable RNA 2'-phosphotransferase KptA
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.32  E-value=0.015  Score=42.36  Aligned_cols=90  Identities=14%  Similarity=0.127  Sum_probs=60.0

Q ss_pred             ccCCCceEEEecChhhHHHHHhCCCCCCCCCCCCCCeEeccchhcHHHHHHhhcCCCCCcEEEEEEcCCCC-CCceEEee
Q 033046            6 EEERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKL-GDGLIYEL   84 (128)
Q Consensus         6 ~~~~~~~iyhI~~~~~W~~a~~~G~~~~~~ld~~dGFIH~St~~Qv~~va~~ff~~~~~~lvlL~ID~~~L-~~~l~wE~   84 (128)
                      ....|..+||=+....|+..++.|- .+.    .--+||||+..+=+....+ ..+  .+.++|.||..+. .+.+++-.
T Consensus        85 ~~~~p~~lyHGT~~~~~~~I~~~GL-~~m----~R~hVHls~~~~~a~~~g~-R~~--~~~~il~ID~~~a~~~Gi~f~~  156 (180)
T d1wfxa_          85 PGEPPPILYHGTTEEALPLIMERGI-MRG----RRLKVHLTSSLEDAVSTGR-RHG--NLVAVLLVDVECLRRRGLKVER  156 (180)
T ss_dssp             SSCCCSEEEECCBGGGHHHHHHHCB-CCC----SSSSEEEESCHHHHHHHHT-TSS--SSBEEEEEEHHHHHHTTCCCEE
T ss_pred             CCCCCceEEecCcHHHHHHHHHhcc-ccc----CCCeEEeccCcccceEEee-ecC--CceEEEEEeHHHHHhCCCEEEE
Confidence            3456789999999999999999884 332    2457999975433322222 222  3578899998754 55677777


Q ss_pred             cCCC-CCCceeeCCCCCCCCCCccceEEEE
Q 033046           85 VDGL-NSFPHFYGPSRSFTPLPLDVVTKAD  113 (128)
Q Consensus        85 ~~gg-~~FPHiYG~~~~~~~Lp~~aV~~v~  113 (128)
                      +.+| .+=+    .      +|.+-+.+|.
T Consensus       157 s~n~V~Lt~----~------vp~~y~~~v~  176 (180)
T d1wfxa_         157 MSKTVYTVD----W------VPPECIAEVR  176 (180)
T ss_dssp             CSSSEEEES----C------BCGGGEEEEE
T ss_pred             ECCeEEEcC----C------cCHHHHHHHH
Confidence            6655 3333    3      7777777765