Citrus Sinensis ID: 033054

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLSDLPPLNC
Secondary Structure (PSIPRED)
cEEEEEEcccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
mghitffwgtnteilfpgwpgesfsCYILALIFVFMISLTVEWISHAKLIKSGISNVASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQvfrnnlkiepyqdlsdlpplnc
Flexible Loop (DISEMBL)
mghitffwgtnteILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKiepyqdlsdlpplnc
Low Complexity Region (SEG)
MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLSDLPPLNC
Disordered region (IsUnstruct)
**HITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPY***********
Disordered Region (DISOPRED)
MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGS****************DLPPLNC
Disordered Region (DISEMBL)
MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLSDLPPLNC
Disordered Region (DISPRO)
*GHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFR******************C
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLSDLPPLNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q39065	170	Copper transporter 1 OS=A	yes	no	0.945	0.711	0.527	1e-32
Q8GWP3	145	Copper transporter 6 OS=A	no	no	0.937	0.827	0.524	1e-31
Q9STG2	158	Copper transporter 2 OS=A	no	no	0.921	0.746	0.495	6e-29
Q9FGU8	151	Copper transporter 3 OS=A	no	no	0.851	0.721	0.532	1e-26
Q8SAA5	145	Copper transporter 4 OS=A	no	no	0.851	0.751	0.473	3e-23
Q94EE4	161	Copper transporter 1 OS=O	yes	no	0.937	0.745	0.401	2e-19
Q60EN8	151	Copper transporter 2 OS=O	no	no	0.976	0.827	0.395	1e-16
Q7XTF8	184	Copper transporter 6 OS=O	no	no	0.820	0.570	0.416	3e-13
Q10KT6	183	Copper transporter 4 OS=O	no	no	0.773	0.540	0.351	7e-10
Q5ZD08	150	Copper transporter 3 OS=O	no	no	0.937	0.8	0.425	1e-09

>sp|Q39065|COPT1_ARATH Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/127 (52%), Positives = 89/127 (70%), Gaps = 6/127 (4%)

Query: 5   TFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGI---SNVASGI 61
           TFFWG NTE+LF GWPG S   Y L LIFVF +++  EW++H+ L++      +N A+G+
Sbjct: 45  TFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGL 104

Query: 62  LQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLS 121
           +QT +Y  RIGLAYLVMLAVMSFN GV L A+AG++VGF++FGSQ FRN       +  +
Sbjct: 105 IQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRN---TSDDRKTN 161

Query: 122 DLPPLNC 128
            +PP  C
Sbjct: 162 YVPPSGC 168

Copper transporter involved in copper acquisition and transport in leaves. Required for copper homeostasis and normal plant growth and development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWP3|COPT6_ARATH Copper transporter 6 OS=Arabidopsis thaliana GN=COPT6 PE=2 SV=1

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/122 (52%), Positives = 91/122 (74%), Gaps = 2/122 (1%)

Query: 1   MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIK-SGISNVAS 59
           M H+TFFWG NTEILF GWPG S   Y+L LI VF++++ VEW++H+ +++  G ++ A 
Sbjct: 24  MMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLAHSSILRGRGSTSRAK 83

Query: 60  GILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIE-PYQ 118
           G++QT +Y  + GLAYLVMLAVMSFN GV + A+AG++VGF++FGS  F+N    E P++
Sbjct: 84  GLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFMLFGSTAFKNPSDDEKPFE 143

Query: 119 DL 120
            L
Sbjct: 144 QL 145

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STG2|COPT2_ARATH Copper transporter 2 OS=Arabidopsis thaliana GN=COPT2 PE=2 SV=1

 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 3/121 (2%)

Query: 6   FFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIK-SGISNVASGILQT 64
           FFWG NTE+LF GWPG S   Y L LI +F++++  EW++H+ +++ SG +N A+G+ QT
Sbjct: 34  FFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAHSPILRVSGSTNRAAGLAQT 93

Query: 65  LMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLSDLP 124
            +Y  + GL+YLVMLAVMSFN GV + A+AGY VGF +FGS  F+     +   +L  LP
Sbjct: 94  AVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLFGSTTFKKPSDDQKTAEL--LP 151

Query: 125 P 125
           P
Sbjct: 152 P 152

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGU8|COPT3_ARATH Copper transporter 3 OS=Arabidopsis thaliana GN=COPT3 PE=2 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 77/109 (70%)

Query: 1   MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASG 60
           M H+TFFWG  TE+LF GWPG S   Y + L  +F+IS   E +S    +KSG +++  G
Sbjct: 29  MMHMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPASLGGG 88

Query: 61  ILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFR 109
           +LQT +Y  R  L+YLVMLAVMSFN GV +AA+AG+ +GF+IFGS+ FR
Sbjct: 89  LLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAFR 137

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8SAA5|COPT4_ARATH Copper transporter 4 OS=Arabidopsis thaliana GN=COPT4 PE=2 SV=2

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/112 (47%), Positives = 71/112 (63%), Gaps = 3/112 (2%)

Query: 3   HITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWI---SHAKLIKSGISNVAS 59
           H TF+WG N ++LF GWPG     Y LALIFVF ++   EW+   S A  IK G   +A 
Sbjct: 31  HPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADKLAK 90

Query: 60  GILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNN 111
              +T MY  + G +YLV+LAV+SFN GV LAA+ G+++GF +F  + FRN 
Sbjct: 91  VAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRNR 142

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94EE4|COPT1_ORYSJ Copper transporter 1 OS=Oryza sativa subsp. japonica GN=COPT1 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 78/127 (61%), Gaps = 7/127 (5%)

Query: 3   HITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAK-----LIKSGISNV 57
           H+TFFWG N+E+LF  WPG     Y LALIFVF +++ VE++   +        +  +  
Sbjct: 34  HMTFFWGKNSEVLFTMWPGTRGGMYALALIFVFALAVIVEFLGSRRADACLAALARRAPA 93

Query: 58  ASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPY 117
           A G+ +  ++  R+G+AYL+MLA+MSFN GV L AVAG++ GFL F + +     ++E  
Sbjct: 94  AGGLARAAVHTVRVGVAYLLMLALMSFNGGVFLVAVAGHAAGFLAFRAGLCGGPAQVE-- 151

Query: 118 QDLSDLP 124
           +D  + P
Sbjct: 152 EDRKNDP 158

Involved in the transport of copper, in cooperation with SWEET11 and COPT2. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q60EN8|COPT2_ORYSJ Copper transporter 2 OS=Oryza sativa subsp. japonica GN=COPT2 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 4/129 (3%)

Query: 3   HITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKL---IKSGISNVAS 59
           H+TFFWG NTE+LF  WPG     Y LA++F+F +++ +E+  +  L   +    +  A+
Sbjct: 24  HMTFFWGKNTEVLFTLWPGARGGMYALAILFMFALAVLLEFRGYRVLEARLARRRAPRAA 83

Query: 60  GILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQD 119
             L+T ++A R+G+AYL+MLA+MSFN GV LA VAG++ GFL F + +        P ++
Sbjct: 84  AALRTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAFRAGLCGGG-PAPPLEE 142

Query: 120 LSDLPPLNC 128
                P+ C
Sbjct: 143 DRKNDPVCC 151

Involved in the transport of copper, in cooperation with SWEET11 and COPT1. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XTF8|COPT6_ORYSJ Copper transporter 6 OS=Oryza sativa subsp. japonica GN=COPT6 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 15/120 (12%)

Query: 3   HITFFWGTNTEILFPGWPGESFS-CYILALIFVFMISLTVEWIS--------------HA 47
           H+TFFW     +L  GWPGE  +  Y L L+FV  ++   E +S               +
Sbjct: 39  HMTFFWSDRAVVLIRGWPGERGAGMYALCLLFVLALAALTEGLSVLSRRLARRGGGAASS 98

Query: 48  KLIKSGISNVASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQV 107
              +   +  +S  L T ++A R+G+AYLVMLAVMSFN+GVLLAAVAG+++GFL+  S+V
Sbjct: 99  DGGRPAPAPASSAALLTAVHAARMGMAYLVMLAVMSFNVGVLLAAVAGHALGFLLARSRV 158

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10KT6|COPT4_ORYSJ Copper transporter 4 OS=Oryza sativa subsp. japonica GN=COPT4 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 12/111 (10%)

Query: 4   ITFFWGTNTEILFPGWPGESFSCYI------------LALIFVFMISLTVEWISHAKLIK 51
           ++F WG    +LFP WPG+     +                 +   S  ++        +
Sbjct: 34  MSFTWGHRAVVLFPRWPGDRAGVGMYFLCLLLVLALAALAEALSAASRRLDLDLDLSRSR 93

Query: 52  SGISNVASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLI 102
                    +L   ++A R+GLAYLVMLAVMSFN GVLLAAVAG++ GFL+
Sbjct: 94  GRRRRRRQQLLAAGVHAARMGLAYLVMLAVMSFNAGVLLAAVAGHAAGFLL 144

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5ZD08|COPT3_ORYSJ Copper transporter 3 OS=Oryza sativa subsp. japonica GN=COPT3 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 73/127 (57%), Gaps = 7/127 (5%)

Query: 3   HITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGIL 62
           H+TF+WG N+EILF GWPG S   Y LAL  VF +++ +E++   ++ +S          
Sbjct: 29  HMTFYWGKNSEILFTGWPGASGGMYALALAAVFALAVLLEFLGSPRVQESSSLGSRRRRA 88

Query: 63  QTLMYAFRI-GLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLS 121
                     GLAYL+MLA+MSFN+GVLLAAVAG++ GFL      FR  L    Y+   
Sbjct: 89  TAAAVHAVRVGLAYLLMLALMSFNVGVLLAAVAGHAAGFL-----AFRAGLCGGGYKK-G 142

Query: 122 DLPPLNC 128
           +L P  C
Sbjct: 143 ELAPAAC 149

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
225434744	173	PREDICTED: copper transporter 1 [Vitis v	1.0	0.739	0.601	2e-41
297745977	133	unnamed protein product [Vitis vinifera]	1.0	0.962	0.601	4e-41
449455064	130	PREDICTED: copper transporter 1-like [Cu	0.976	0.961	0.570	2e-38
224104365	155	copper transporter [Populus trichocarpa]	0.968	0.8	0.592	1e-37
449455066	159	PREDICTED: copper transporter 1-like iso	0.953	0.767	0.556	6e-34
224104361	162	copper transporter [Populus trichocarpa]	0.945	0.746	0.566	1e-33
255558890	113	copper transporter, putative [Ricinus co	0.882	1.0	0.640	1e-33
297745980	160	unnamed protein product [Vitis vinifera]	0.968	0.775	0.532	2e-32
225434750	177	PREDICTED: copper transporter 1 [Vitis v	0.968	0.700	0.532	2e-32
225440544	152	PREDICTED: copper transporter 6 [Vitis v	0.945	0.796	0.557	4e-32

>gi|225434744|ref|XP_002280088.1| PREDICTED: copper transporter 1 [Vitis vinifera] gi|321496082|gb|ADW93918.1| copper transporter [Vitis vinifera]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/128 (60%), Positives = 100/128 (78%)

Query: 1   MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASG 60
           M H+TFFWG +TEI F GWPG+S   Y +AL  VF +S+ VEW+SH + IKS  + + +G
Sbjct: 46  MTHMTFFWGMSTEIFFSGWPGQSSGMYAVALALVFGLSMLVEWLSHTRFIKSTTNKLVAG 105

Query: 61  ILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDL 120
           +LQT MY  R+GLAYLVMLAVMSFN+GV L A+AGY+ GFL+FGS+VFR++ ++ PY+  
Sbjct: 106 LLQTAMYGLRVGLAYLVMLAVMSFNVGVFLVAIAGYTTGFLLFGSRVFRDSSEMLPYEKA 165

Query: 121 SDLPPLNC 128
           SDLPPLNC
Sbjct: 166 SDLPPLNC 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745977|emb|CBI16033.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 77/128 (60%), Positives = 100/128 (78%)

Query: 1   MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASG 60
           M H+TFFWG +TEI F GWPG+S   Y +AL  VF +S+ VEW+SH + IKS  + + +G
Sbjct: 6   MTHMTFFWGMSTEIFFSGWPGQSSGMYAVALALVFGLSMLVEWLSHTRFIKSTTNKLVAG 65

Query: 61  ILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDL 120
           +LQT MY  R+GLAYLVMLAVMSFN+GV L A+AGY+ GFL+FGS+VFR++ ++ PY+  
Sbjct: 66  LLQTAMYGLRVGLAYLVMLAVMSFNVGVFLVAIAGYTTGFLLFGSRVFRDSSEMLPYEKA 125

Query: 121 SDLPPLNC 128
           SDLPPLNC
Sbjct: 126 SDLPPLNC 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455064|ref|XP_004145273.1| PREDICTED: copper transporter 1-like [Cucumis sativus] gi|449471515|ref|XP_004153332.1| PREDICTED: copper transporter 1-like [Cucumis sativus]

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 101/128 (78%), Gaps = 3/128 (2%)

Query: 3   HITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGIL 62
           H+TF+WG   EILFPGWPG SF   ++ LIFVF+++ TVEW+SH K   S + N+ +G++
Sbjct: 4   HMTFYWGKTIEILFPGWPGRSFFSSVIVLIFVFLLAFTVEWLSHTKFTTSAMDNLTAGLV 63

Query: 63  QTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLS- 121
           QT++Y  R+GLA++VMLAVMS+N+G+LLAAV GYS+GFL++GS++F N  KI+P  +L  
Sbjct: 64  QTILYGIRVGLAFIVMLAVMSYNVGILLAAVTGYSIGFLVYGSKIF-NRSKIDPNLNLDS 122

Query: 122 -DLPPLNC 128
            DLPPLNC
Sbjct: 123 LDLPPLNC 130

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104365|ref|XP_002313412.1| copper transporter [Populus trichocarpa] gi|222849820|gb|EEE87367.1| copper transporter [Populus trichocarpa]

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 100/125 (80%), Gaps = 1/125 (0%)

Query: 1   MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASG 60
           M H+TFFWG +T ILF GWPG S   Y+LAL+F+F++++ VEW+SH +L+K G +NVA+G
Sbjct: 29  MTHMTFFWGKDTLILFSGWPGTSTGMYVLALVFIFVLAVLVEWLSHCRLVKPGSNNVAAG 88

Query: 61  ILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDL 120
           ++Q LM+A R+GLAY+VMLAVMSFN GV + AVAG+ VGF IFGS+VF++  ++ PY   
Sbjct: 89  LIQALMHAVRVGLAYMVMLAVMSFNGGVFIVAVAGHLVGFFIFGSRVFKDT-EMPPYHKT 147

Query: 121 SDLPP 125
           SDLPP
Sbjct: 148 SDLPP 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455066|ref|XP_004145274.1| PREDICTED: copper transporter 1-like isoform 1 [Cucumis sativus] gi|449471163|ref|XP_004153227.1| PREDICTED: copper transporter 1-like isoform 1 [Cucumis sativus] gi|449510896|ref|XP_004163804.1| PREDICTED: copper transporter 1-like isoform 1 [Cucumis sativus]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 92/124 (74%), Gaps = 2/124 (1%)

Query: 5   TFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGILQT 64
           TFFWGTN EILF  WPGE    Y LALIF+F+++  VEW++H +LIK   S  A+G+++T
Sbjct: 38  TFFWGTNAEILFHRWPGERSGMYALALIFIFVLAFLVEWLTHCRLIKEDSSRAAAGLIRT 97

Query: 65  LMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLSDLP 124
           LM+  R+GLAYLVMLAVMSFN+GVLL A+ G+ +GF +FGS+ F+ +  +      SDLP
Sbjct: 98  LMHTVRVGLAYLVMLAVMSFNVGVLLVAIGGHCLGFFLFGSKFFKRSEAVSGKS--SDLP 155

Query: 125 PLNC 128
           PL+C
Sbjct: 156 PLSC 159

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104361|ref|XP_002313411.1| copper transporter [Populus trichocarpa] gi|118485983|gb|ABK94836.1| unknown [Populus trichocarpa] gi|222849819|gb|EEE87366.1| copper transporter [Populus trichocarpa]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 99/127 (77%), Gaps = 6/127 (4%)

Query: 5   TFFWGTNTEILFPGWPGESFS---CYILALIFVFMISLTVEWISHAKLIKSGISNVASGI 61
           TFFWG +TEILF GWPG S      Y +AL+FVF++S+ VEW+SH +L+K G ++VA+G+
Sbjct: 39  TFFWGKSTEILFSGWPGSSDKRPHMYFVALLFVFVLSILVEWLSHCQLMKPGSNHVAAGL 98

Query: 62  LQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLS 121
           +QTL++A R+GLAY+VMLA+MSFN GV LAAVAG+++GFL FGS+VF+   + +     S
Sbjct: 99  VQTLLHALRVGLAYMVMLAIMSFNGGVFLAAVAGHTLGFLFFGSRVFK---RTQNPAKTS 155

Query: 122 DLPPLNC 128
           DLPP +C
Sbjct: 156 DLPPSSC 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558890|ref|XP_002520468.1| copper transporter, putative [Ricinus communis] gi|223540310|gb|EEF41881.1| copper transporter, putative [Ricinus communis]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 90/114 (78%), Gaps = 1/114 (0%)

Query: 15  LFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGILQTLMYAFRIGLA 74
           +F G P +S   Y ++L  VF+I++ VEW+SHA+LIK G +NV +G+ QT +YA R+ LA
Sbjct: 1   MFQGLPSQSSYSYAVSLASVFLIAIAVEWLSHARLIKIGTNNVLAGLQQTAIYAIRVTLA 60

Query: 75  YLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLSDLPPLNC 128
           +LVMLAVMSF+ GVLLAAVAGYS+GFLIFGSQVFR    IEPYQD  DLPPLNC
Sbjct: 61  FLVMLAVMSFDTGVLLAAVAGYSIGFLIFGSQVFRKP-NIEPYQDSIDLPPLNC 113

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745980|emb|CBI16036.3| unnamed protein product [Vitis vinifera]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/124 (53%), Positives = 94/124 (75%)

Query: 5   TFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGILQT 64
           TF+WG   EILF GWPG     Y LALI VF++++ VEW+SH +LIK G ++VA+G++QT
Sbjct: 37  TFYWGKKAEILFSGWPGTRSGMYALALIVVFVMAIIVEWLSHFQLIKPGSTHVAAGVVQT 96

Query: 65  LMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLSDLP 124
           L++A R+GL Y+VMLA+MSFN G+ L AVAG++VGFL+FGS++FR +  + P +    L 
Sbjct: 97  LLHAIRMGLEYMVMLALMSFNGGMFLVAVAGHAVGFLVFGSRLFRGSETLRPSEKAFYLS 156

Query: 125 PLNC 128
           P++C
Sbjct: 157 PMSC 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434750|ref|XP_002280132.1| PREDICTED: copper transporter 1 [Vitis vinifera] gi|321496076|gb|ADW93915.1| copper transporter [Vitis vinifera]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/124 (53%), Positives = 94/124 (75%)

Query: 5   TFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGILQT 64
           TF+WG   EILF GWPG     Y LALI VF++++ VEW+SH +LIK G ++VA+G++QT
Sbjct: 54  TFYWGKKAEILFSGWPGTRSGMYALALIVVFVMAIIVEWLSHFQLIKPGSTHVAAGVVQT 113

Query: 65  LMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLSDLP 124
           L++A R+GL Y+VMLA+MSFN G+ L AVAG++VGFL+FGS++FR +  + P +    L 
Sbjct: 114 LLHAIRMGLEYMVMLALMSFNGGMFLVAVAGHAVGFLVFGSRLFRGSETLRPSEKAFYLS 173

Query: 125 PLNC 128
           P++C
Sbjct: 174 PMSC 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440544|ref|XP_002276084.1| PREDICTED: copper transporter 6 [Vitis vinifera] gi|321496072|gb|ADW93913.1| copper transporter [Vitis vinifera]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 90/122 (73%), Gaps = 1/122 (0%)

Query: 3   HITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGIL 62
           H+TFFWG N EILF GWPG S   Y LALI VF+++L +EW+S + L+K G  NV +G+L
Sbjct: 29  HMTFFWGKNAEILFSGWPGTSSGMYALALILVFVVALLLEWLSRSSLLKPGPHNVTTGLL 88

Query: 63  QTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLSD 122
           QT +YA R G +Y++MLAVMSFN G+ LAAVAG+++GFLIFGS+VF+    +    + SD
Sbjct: 89  QTALYAIRSGFSYMLMLAVMSFNGGIFLAAVAGHALGFLIFGSRVFKKT-GVTASDERSD 147

Query: 123 LP 124
            P
Sbjct: 148 AP 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2153306	170	COPT1 "copper transporter 1" [	0.976	0.735	0.541	1.5e-33
TAIR|locus:504955951	145	COPT6 "copper transporter 6" [	0.937	0.827	0.524	2.9e-32
TAIR|locus:2102752	158	COPT2 "copper transporter 2" [	0.960	0.778	0.5	4.2e-31
TAIR|locus:2153311	151	COPT3 "copper transporter 3" [	0.851	0.721	0.532	2.2e-27
TAIR|locus:504955905	145	COPT4 "copper transporter 4" [	0.843	0.744	0.477	3.3e-24
UNIPROTKB|Q60EN8	151	COPT2 "Copper transporter 2" [	0.781	0.662	0.466	6.3e-21
UNIPROTKB|Q94EE4	161	COPT1 "Copper transporter 1" [	0.789	0.627	0.462	1.3e-20
DICTYBASE|DDB_G0285545	146	DDB_G0285545 "Ctr copper trans	0.437	0.383	0.339	1.4e-09
FB|FBgn0062413	231	Ctr1A "Copper transporter 1A"	0.335	0.186	0.372	4.8e-09
FB|FBgn0062412	174	Ctr1B "Copper transporter 1B"	0.367	0.270	0.382	8.8e-09

TAIR|locus:2153306 COPT1 "copper transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 71/131 (54%), Positives = 94/131 (71%)

Query:     1 MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIK--SGIS-NV 57
             M H+TFFWG NTE+LF GWPG S   Y L LIFVF +++  EW++H+ L++  +G S N 
Sbjct:    41 MMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANR 100

Query:    58 ASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPY 117
             A+G++QT +Y  RIGLAYLVMLAVMSFN GV L A+AG++VGF++FGSQ FRN       
Sbjct:   101 AAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNT---SDD 157

Query:   118 QDLSDLPPLNC 128
             +  + +PP  C
Sbjct:   158 RKTNYVPPSGC 168

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;IGI;ISS

GO:0006825 "copper ion transport" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0048235 "pollen sperm cell differentiation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0016020 "membrane" evidence=ISS

TAIR|locus:504955951 COPT6 "copper transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 64/122 (52%), Positives = 91/122 (74%)

Query:     1 MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKS-GISNVAS 59
             M H+TFFWG NTEILF GWPG S   Y+L LI VF++++ VEW++H+ +++  G ++ A 
Sbjct:    24 MMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLAHSSILRGRGSTSRAK 83

Query:    60 GILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIE-PYQ 118
             G++QT +Y  + GLAYLVMLAVMSFN GV + A+AG++VGF++FGS  F+N    E P++
Sbjct:    84 GLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFMLFGSTAFKNPSDDEKPFE 143

Query:   119 DL 120
              L
Sbjct:   144 QL 145

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2102752 COPT2 "copper transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 63/126 (50%), Positives = 88/126 (69%)

Query:     1 MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIK-SGISNVAS 59
             M H+TFFWG NTE+LF GWPG S   Y L LI +F++++  EW++H+ +++ SG +N A+
Sbjct:    29 MMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAHSPILRVSGSTNRAA 88

Query:    60 GILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQD 119
             G+ QT +Y  + GL+YLVMLAVMSFN GV + A+AGY VGF +FGS  F+     +   +
Sbjct:    89 GLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLFGSTTFKKPSDDQKTAE 148

Query:   120 LSDLPP 125
             L  LPP
Sbjct:   149 L--LPP 152

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

GO:0015678 "high-affinity copper ion transport" evidence=IGI

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2153311 COPT3 "copper transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 58/109 (53%), Positives = 77/109 (70%)

Query:     1 MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASG 60
             M H+TFFWG  TE+LF GWPG S   Y + L  +F+IS   E +S    +KSG +++  G
Sbjct:    29 MMHMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPASLGGG 88

Query:    61 ILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFR 109
             +LQT +Y  R  L+YLVMLAVMSFN GV +AA+AG+ +GF+IFGS+ FR
Sbjct:    89 LLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAFR 137

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

TAIR|locus:504955905 COPT4 "copper transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 53/111 (47%), Positives = 71/111 (63%)

Query:     3 HITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWI---SHAKLIKSGISNVAS 59
             H TF+WG N ++LF GWPG     Y LALIFVF ++   EW+   S A  IK G   +A 
Sbjct:    31 HPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADKLAK 90

Query:    60 GILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRN 110
                +T MY  + G +YLV+LAV+SFN GV LAA+ G+++GF +F  + FRN
Sbjct:    91 VAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRN 141

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

UNIPROTKB|Q60EN8 COPT2 "Copper transporter 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 49/105 (46%), Positives = 72/105 (68%)

Query:     3 HITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEW----ISHAKLIKSGISNVA 58
             H+TFFWG NTE+LF  WPG     Y LA++F+F +++ +E+    +  A+L +      A
Sbjct:    24 HMTFFWGKNTEVLFTLWPGARGGMYALAILFMFALAVLLEFRGYRVLEARLARRRAPRAA 83

Query:    59 SGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIF 103
             +  L+T ++A R+G+AYL+MLA+MSFN GV LA VAG++ GFL F
Sbjct:    84 AA-LRTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAF 127

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q94EE4 COPT1 "Copper transporter 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/106 (46%), Positives = 70/106 (66%)

Query:     3 HITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWIS--HAKLIKSGISN---V 57
             H+TFFWG N+E+LF  WPG     Y LALIFVF +++ VE++    A    + ++     
Sbjct:    34 HMTFFWGKNSEVLFTMWPGTRGGMYALALIFVFALAVIVEFLGSRRADACLAALARRAPA 93

Query:    58 ASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIF 103
             A G+ +  ++  R+G+AYL+MLA+MSFN GV L AVAG++ GFL F
Sbjct:    94 AGGLARAAVHTVRVGVAYLLMLALMSFNGGVFLVAVAGHAAGFLAF 139

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

DICTYBASE|DDB_G0285545 DDB_G0285545 "Ctr copper transporter family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 95 (38.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 19/56 (33%), Positives = 33/56 (58%)

Query:    59 SGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKI 114
             S + +T+++     + Y +ML  MSFN G+ ++ V G  VGF +FG + F  ++ I
Sbjct:    85 SHLWKTIVHMIAFIVNYTIMLIFMSFNGGICISCVLGIGVGFYLFGQKRFSKSVAI 140

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0062413 Ctr1A "Copper transporter 1A" [Drosophila melanogaster (taxid:7227)]

 Score = 94 (38.1 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
 Identities = 16/43 (37%), Positives = 31/43 (72%)

Query:    61 ILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIF 103
             +LQTL++  ++ L++L+ML  M++N+ + L  V G +VG+ +F
Sbjct:   174 LLQTLLHVLQVTLSFLLMLIFMTYNVWLCLMVVLGAAVGYFLF 216

GO:0005375 "copper ion transmembrane transporter activity" evidence=IC;ISS;IDA;NAS

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0006825 "copper ion transport" evidence=IDA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015088 "copper uptake transmembrane transporter activity" evidence=IMP

GO:0015679 "plasma membrane copper ion transport" evidence=IC

GO:0006878 "cellular copper ion homeostasis" evidence=IMP

GO:0002027 "regulation of heart rate" evidence=IMP

FB|FBgn0062412 Ctr1B "Copper transporter 1B" [Drosophila melanogaster (taxid:7227)]

 Score = 93 (37.8 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
 Identities = 18/47 (38%), Positives = 31/47 (65%)

Query:    58 ASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFG 104
             +S I+Q+L+   +I ++YL+ML  M+FN  + LA + G  +G+  FG
Sbjct:   115 SSHIVQSLLNLLQIVISYLLMLIFMTFNYWLCLAVILGLGLGYFFFG 161

GO:0005375 "copper ion transmembrane transporter activity" evidence=ISS;IDA;NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006825 "copper ion transport" evidence=IDA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015088 "copper uptake transmembrane transporter activity" evidence=IMP

GO:0010038 "response to metal ion" evidence=IMP

GO:0006878 "cellular copper ion homeostasis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39065	COPT1_ARATH	No assigned EC number	0.5275	0.9453	0.7117	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00091265 copper transporter (155 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
pfam04145	102	pfam04145, Ctr, Ctr copper transporter family	7e-20

>gnl|CDD|217925 pfam04145, Ctr, Ctr copper transporter family

 Score = 77.5 bits (192), Expect = 7e-20
 Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 2/102 (1%)

Query: 3   HITFFWGT-NTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGI 61
            + F WGT +T +LF GW   +   Y  + I +F++++  E +   +     +S +   +
Sbjct: 2   SMLFNWGTKDTCVLFSGWHITTAGMYAGSCIAIFLLAILYEGLKRVRRKLERMS-LFQHL 60

Query: 62  LQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIF 103
           ++ L++  ++GL+YL+ML VM++N G+ LA V G ++G+ +F
Sbjct: 61  IRALLHFLQVGLSYLLMLIVMTYNGGLFLAVVLGAALGYFLF 102

The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionine probably coordinate copper during the process of metal transport. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
KOG3386	155	consensus Copper transporter [Inorganic ion transp	100.0
PF04145	144	Ctr: Ctr copper transporter family; InterPro: IPR0	100.0
PF11446	55	DUF2897: Protein of unknown function (DUF2897); In	93.4

>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-34  Score=213.07  Aligned_cols=108  Identities=33%  Similarity=0.563  Sum_probs=98.6

Q ss_pred             CeeeeEEccCceeEecCCCccCChHHHHHHHHHHHHHHHHHHHHHHhhhh-----c---CC-C--------Cc----hHH
Q 033054            1 MGHITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLI-----K---SG-I--------SN----VAS   59 (128)
Q Consensus         1 mM~M~F~~~~~~~lLF~~W~~~t~~~~~~s~i~vf~la~~~e~l~~~r~~-----~---p~-~--------~~----~~~   59 (128)
                      +|.|+|||+..+++||++|+++|+++|+++|+++|++|+++|+||..|+.     +   |. +        .+    ...
T Consensus        15 ~m~M~f~~~~~~~iLF~~W~~~s~~~~~ls~i~iflla~l~E~Lk~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   94 (155)
T KOG3386|consen   15 MMMMFFHFKTIETILFSSWHITSAGGMALSCIAIFLLAVLYEALKFGREKLFRWQQLRQPTGHGHEIPLSGPSKLLNSAS   94 (155)
T ss_pred             ceEEEEecCceeEEEEcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccCcchhhhhHH
Confidence            69999999988999999999999999999999999999999999999963     1   10 0        01    467


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccc
Q 033054           60 GILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVF  108 (128)
Q Consensus        60 ~l~~~~l~~~~~~l~YlLMLivMTfN~~l~~avi~G~~iG~~~f~~~~~  108 (128)
                      |++|+++|.+|.++||+|||++||||+|+++||++|+++||++|+.+..
T Consensus        95 h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~Lavv~Ga~~G~flF~~~~~  143 (155)
T KOG3386|consen   95 HLIQTLLYVVQLGFSYLLMLIFMTFNGYLFLAVVLGAGVGYFLFGSLTF  143 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhheeeeccc
Confidence            9999999999999999999999999999999999999999999999886

>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation

Probab=100.00  E-value=1.1e-35  Score=214.13  Aligned_cols=102  Identities=26%  Similarity=0.543  Sum_probs=58.6

Q ss_pred             eeeeEEccC-ceeEecCCCccCChHHHHHHHHHHHHHHHHHHHHHHhhhh------c-----------CC--------C-
Q 033054            2 GHITFFWGT-NTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLI------K-----------SG--------I-   54 (128)
Q Consensus         2 M~M~F~~~~-~~~lLF~~W~~~t~~~~~~s~i~vf~la~~~e~l~~~r~~------~-----------p~--------~-   54 (128)
                      |+|+|||+. ++++||++|+++|.++|+++|+++|++|+++|+||.+|..      +           ++        + 
T Consensus         1 M~M~F~~~~~~~~lLF~~W~~~s~~~~~~sci~~f~lav~~e~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (144)
T PF04145_consen    1 MSMYFHWGTIRDCLLFKSWKPSSAGAYVGSCIGVFLLAVLYEFLKALRRRLERRWARRRSRRASCSSSESRSRSDASSKS   80 (144)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHTTT-------------------------------------
T ss_pred             CeeEEEcCCCccEEEeCCcEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCccccccc
Confidence            899999997 9999999999999999999999999999999999999853      0           00        0 


Q ss_pred             ---------------CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 033054           55 ---------------SNVASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIF  103 (128)
Q Consensus        55 ---------------~~~~~~l~~~~l~~~~~~l~YlLMLivMTfN~~l~~avi~G~~iG~~~f  103 (128)
                                     .....|++|+++|++|+++||+|||+|||||+|+++||++|.++||++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~Y~LMLvvMTyN~~l~~aVv~G~~~G~~~F  144 (144)
T PF04145_consen   81 SPSPSSTSPRSSRRRWFWSQHLIRALLHFVQVLLGYLLMLVVMTYNVYLFIAVVLGAGLGYFLF  144 (144)
T ss_dssp             ---------------------SHHHHHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHTTSS-GG
T ss_pred             ccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhheeHHHHHHHHHHHHHheeeC
Confidence                           0134689999999999999999999999999999999999999999987

A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.

>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins

Probab=93.40  E-value=0.072  Score=33.12  Aligned_cols=28  Identities=14%  Similarity=0.159  Sum_probs=24.4

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHhcccccc
Q 033054           82 MSFNIGVLLAAVAGYSVGFLIFGSQVFR  109 (128)
Q Consensus        82 MTfN~~l~~avi~G~~iG~~~f~~~~~~  109 (128)
                      |+.|+|+++.+++|..+|.+.-=+++..
T Consensus         1 ~~~~~wlIIviVlgvIigNia~LK~sAk   28 (55)
T PF11446_consen    1 STWNPWLIIVIVLGVIIGNIAALKYSAK   28 (55)
T ss_pred             CcchhhHHHHHHHHHHHhHHHHHHHhcc
Confidence            6899999999999999999998666543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
2ls3_A	29	High affinity copper uptake protein 1; HCTR1 TMDS,	98.85
2ls4_A	26	High affinity copper uptake protein 1; HCTR1 TMDS,	97.91
2ls2_A	26	High affinity copper uptake protein 1; HCTR1 TMDS,	97.1

>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=98.85  E-value=1.1e-12  Score=71.07  Aligned_cols=28  Identities=29%  Similarity=0.599  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 033054           59 SGILQTLMYAFRIGLAYLVMLAVMSFNI   86 (128)
Q Consensus        59 ~~l~~~~l~~~~~~l~YlLMLivMTfN~   86 (128)
                      .|++|+++|++|.++||+|||++||||+
T Consensus         1 ~h~~ra~l~~~q~~~~Y~LML~~MtyN~   28 (29)
T 2ls3_A            1 KHLLQTVLHIIQVVISYFLMLIFMTYNK   28 (29)
Confidence            4789999999999999999999999996

>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=97.91  E-value=1.2e-08  Score=53.72  Aligned_cols=24  Identities=25%  Similarity=0.469  Sum_probs=22.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcccc
Q 033054           84 FNIGVLLAAVAGYSVGFLIFGSQV  107 (128)
Q Consensus        84 fN~~l~~avi~G~~iG~~~f~~~~  107 (128)
                      ||+|+++||++|+++||++|++++
T Consensus         1 YNg~l~iavvlGa~~Gyf~F~~~~   24 (26)
T 2ls4_A            1 YNGYLCIAVAAGAGTGYFLFSWKK   24 (26)
Confidence            899999999999999999999875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00