Citrus Sinensis ID: 033063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKPRYAKEKKG
Secondary Structure (PSIPRED)
ccccccEEEEEEccccccHHHHHHHHHHHcccHHHHcccccEEEEEEcccccccEEEEEEEcccEEEEEcccccHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHcEEEEEEccccHHHHHHHHHHHHHccHHHHHcccccEEEEEEEccccccEEEEEEEcccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcHHHHcccccccccccHHHccc
Coil and Loop (DISEMBL)
MLKFLSKVRIEFNALDPRIASCMEFLAQcnapkakesnpacqiqvkrrtddhppeikVTFVTGAeevfdatstsAHTIRSMILEKGQMLENEQMFRdaglnwpvlipdeelqqpmagikpryakekkg
Flexible Loop (DISEMBL)
MLKFLSKVRIEFNALDPRIASCMEFLAQCNapkakesnpacqiqvkrrtddhppEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIpdeelqqpmagikpryakekkg
Low Complexity Region (SEG)
MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKPRYAKEKKG
Disordered region (IsUnstruct)
***FLSKVRIEFNALDPRIASCMEFLAQCN*************************IKVTFVTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIP*********************
Disordered Region (DISOPRED)
*LKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEE******************
Disordered Region (DISEMBL)
MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKPRYAKEKKG
Disordered Region (DISPRO)
MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMA************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKPRYAKEKKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
449460211	127	PREDICTED: uncharacterized protein LOC10	0.992	1.0	0.803	2e-54
255552922	128	conserved hypothetical protein [Ricinus	0.992	0.992	0.771	2e-51
225458043	128	PREDICTED: uncharacterized protein LOC10	0.992	0.992	0.779	5e-51
224122184	128	predicted protein [Populus trichocarpa]	0.992	0.992	0.771	5e-51
224129488	128	predicted protein [Populus trichocarpa]	0.992	0.992	0.771	8e-51
27450530	128	hypothetical protein [Prunus persica]	0.992	0.992	0.763	1e-49
15241817	127	uncharacterized protein [Arabidopsis tha	0.992	1.0	0.732	8e-49
388495410	128	unknown [Medicago truncatula]	0.992	0.992	0.724	1e-48
297801646	127	hypothetical protein ARALYDRAFT_916342 [	0.992	1.0	0.716	2e-48
357437063	128	hypothetical protein MTR_1g013440 [Medic	0.992	0.992	0.716	9e-48

>gi|449460211|ref|XP_004147839.1| PREDICTED: uncharacterized protein LOC101217531 [Cucumis sativus] gi|449476878|ref|XP_004154862.1| PREDICTED: uncharacterized LOC101217531 [Cucumis sativus]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/127 (80%), Positives = 113/127 (88%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTF 60
           MLKFLSKV+IEFNALDPR+A CMEFLAQCNA KAKESNPACQ+ VKRRTDDHPP+I VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60

Query: 61  VTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKP 120
           V G EEVFDATST A TIRSMILEKGQ+LE EQMFR+AG  WPV+IPDEEL+QP  GIKP
Sbjct: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120

Query: 121 RYAKEKK 127
           R A++K+
Sbjct: 121 RKAEDKQ 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552922|ref|XP_002517504.1| conserved hypothetical protein [Ricinus communis] gi|223543515|gb|EEF45046.1| conserved hypothetical protein [Ricinus communis]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 107/127 (84%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTF 60
           MLKFLSKV+IEFNALDPR ASC+EFLAQCNA KAKESNPACQ+ VKRRTDDHPP+I VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRTASCLEFLAQCNARKAKESNPACQLLVKRRTDDHPPQITVTF 60

Query: 61  VTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKP 120
           V G EEVFD T+ SA TIR+MILEKGQ LE EQMFR+AG  WPVLIP+ EL Q   G KP
Sbjct: 61  VNGVEEVFDGTTVSAQTIRNMILEKGQSLETEQMFREAGEKWPVLIPEHELHQSFPGTKP 120

Query: 121 RYAKEKK 127
           R A+EKK
Sbjct: 121 RKAEEKK 127

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458043|ref|XP_002277840.1| PREDICTED: uncharacterized protein LOC100243821 [Vitis vinifera] gi|302142624|emb|CBI19827.3| unnamed protein product [Vitis vinifera]

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 99/127 (77%), Positives = 108/127 (85%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTF 60
           MLKFLSKVRIEFNALDPR ASC+EFLAQCNA KAKESNPACQ+ VKRRTDDHPP+I VTF
Sbjct: 1   MLKFLSKVRIEFNALDPRTASCLEFLAQCNARKAKESNPACQLLVKRRTDDHPPQITVTF 60

Query: 61  VTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKP 120
           V G EEVFDAT+T A  IR+MILEKGQ LE EQMFR+AG  WPV+IP+EEL Q   G KP
Sbjct: 61  VNGVEEVFDATTTPAQAIRNMILEKGQHLETEQMFREAGEAWPVIIPEEELHQFAPGTKP 120

Query: 121 RYAKEKK 127
           R A+EKK
Sbjct: 121 RKAEEKK 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122184|ref|XP_002318772.1| predicted protein [Populus trichocarpa] gi|222859445|gb|EEE96992.1| predicted protein [Populus trichocarpa]

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 108/127 (85%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTF 60
           MLKFLSKV+IEFNALDPR+ASCMEFLAQCNA KAKESNPACQ+ VKRRTDD PP+I VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRVASCMEFLAQCNARKAKESNPACQVLVKRRTDDFPPQITVTF 60

Query: 61  VTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKP 120
           V G EE FDATST A  IR+MILEKGQ+LE EQMFR+AG  WPV+IP+EEL Q   G KP
Sbjct: 61  VNGVEEAFDATSTPAQAIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHQFAPGTKP 120

Query: 121 RYAKEKK 127
           R A+EKK
Sbjct: 121 RKAEEKK 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129488|ref|XP_002328729.1| predicted protein [Populus trichocarpa] gi|118484232|gb|ABK93996.1| unknown [Populus trichocarpa] gi|222839027|gb|EEE77378.1| predicted protein [Populus trichocarpa]

 Score =  204 bits (520), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 108/127 (85%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTF 60
           MLKFLSKV+IEFNALDPR+ASCMEFLAQCNA KAKESNPACQ+ VKRRTDD PP+I VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRVASCMEFLAQCNARKAKESNPACQLLVKRRTDDFPPQITVTF 60

Query: 61  VTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKP 120
           V G EE FDATST A  IR+MILEKGQ+LE EQMFR+AG  WPV+IP+EEL Q   G KP
Sbjct: 61  VNGVEEAFDATSTPAQAIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHQFAPGTKP 120

Query: 121 RYAKEKK 127
           R A+EKK
Sbjct: 121 RKAEEKK 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27450530|gb|AAO14625.1|AF467900_2 hypothetical protein [Prunus persica]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 105/127 (82%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTF 60
           MLKFL +VRIEFNALDPR ASC+EFLAQCNA KAKESNP+C +QVKRRTDD PP+I VTF
Sbjct: 1   MLKFLWRVRIEFNALDPRTASCLEFLAQCNARKAKESNPSCAVQVKRRTDDEPPKITVTF 60

Query: 61  VTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKP 120
           V G EEVFDAT+T A  IR+MILEKGQ LE EQMFRDAG  WPV+IP EEL QP  G KP
Sbjct: 61  VNGVEEVFDATATPAQDIRNMILEKGQSLETEQMFRDAGEPWPVIIPAEELHQPAPGTKP 120

Query: 121 RYAKEKK 127
           R A EKK
Sbjct: 121 RKADEKK 127

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241817|ref|NP_198776.1| uncharacterized protein [Arabidopsis thaliana] gi|15451164|gb|AAK96853.1| Unknown protein [Arabidopsis thaliana] gi|18377434|gb|AAL66883.1| unknown protein [Arabidopsis thaliana] gi|332007070|gb|AED94453.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  198 bits (503), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 93/127 (73%), Positives = 106/127 (83%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTF 60
           MLKFLSKVRIEFN LDPR+ASC+EFLAQCNA KAKESNP CQ+ VKRRTD+ PP+I VTF
Sbjct: 1   MLKFLSKVRIEFNTLDPRLASCVEFLAQCNARKAKESNPNCQVLVKRRTDEQPPQITVTF 60

Query: 61  VTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKP 120
           V G EE FDA +TSA +IR MIL+KGQ LE EQMFR+AG  WPV+IPDEEL Q   G+KP
Sbjct: 61  VNGVEEAFDAAATSAQSIRKMILDKGQYLETEQMFREAGEQWPVIIPDEELLQEAPGVKP 120

Query: 121 RYAKEKK 127
           R A++KK
Sbjct: 121 RKAEDKK 127

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495410|gb|AFK35771.1| unknown [Medicago truncatula]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 105/127 (82%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTF 60
           MLKFLSKV+IEFNALDPR ASCMEFLAQCN+ KAKESNPAC++++KR+  +HPP+I VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRTASCMEFLAQCNSRKAKESNPACEVEIKRKNVEHPPQITVTF 60

Query: 61  VTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKP 120
           V G EE FDATST  H I  MILEKGQ+LE EQMFR+AG  WPV+IPDEEL Q   G KP
Sbjct: 61  VNGVEEAFDATSTPVHRITKMILEKGQLLETEQMFREAGEQWPVIIPDEELSQHAPGTKP 120

Query: 121 RYAKEKK 127
           R A+EKK
Sbjct: 121 RKAEEKK 127

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801646|ref|XP_002868707.1| hypothetical protein ARALYDRAFT_916342 [Arabidopsis lyrata subsp. lyrata] gi|297314543|gb|EFH44966.1| hypothetical protein ARALYDRAFT_916342 [Arabidopsis lyrata subsp. lyrata]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 105/127 (82%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTF 60
           MLKFLSKVR+E+N LDPR+ASC+EFLAQCNA KAKESNP CQ+ VKRRTD+ PP+I VTF
Sbjct: 1   MLKFLSKVRVEYNTLDPRLASCVEFLAQCNARKAKESNPNCQVLVKRRTDEQPPQITVTF 60

Query: 61  VTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKP 120
           V G EE FDA  TSA +IR MIL+KGQ LE EQMFR+AG  WPV+IPDEEL Q   G+KP
Sbjct: 61  VNGVEEAFDAAETSAQSIRKMILDKGQYLETEQMFREAGEQWPVIIPDEELLQEALGVKP 120

Query: 121 RYAKEKK 127
           R A++KK
Sbjct: 121 RKAEDKK 127

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437063|ref|XP_003588807.1| hypothetical protein MTR_1g013440 [Medicago truncatula] gi|355477855|gb|AES59058.1| hypothetical protein MTR_1g013440 [Medicago truncatula] gi|388513131|gb|AFK44627.1| unknown [Medicago truncatula]

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 104/127 (81%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTF 60
           MLKFLS+V++EFNALDPR ASCMEFLAQCN+ KAKESNPAC+++VKR   +HPP+I VTF
Sbjct: 1   MLKFLSRVKVEFNALDPRTASCMEFLAQCNSRKAKESNPACEVEVKRGNVEHPPQITVTF 60

Query: 61  VTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKP 120
           V G EE FDATST  H I  MILEKGQ+LE EQMFR+AG  WPV+IPDEEL Q   G KP
Sbjct: 61  VNGVEEAFDATSTPVHRITRMILEKGQLLETEQMFREAGEQWPVIIPDEELSQHAPGTKP 120

Query: 121 RYAKEKK 127
           R A+EKK
Sbjct: 121 RKAEEKK 127

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2164885	127	AT5G39600 "AT5G39600" [Arabido	0.992	1.0	0.732	6.9e-47
FB|FBgn0050481	155	mRpL53 "mitochondrial ribosoma	0.507	0.419	0.276	0.00062

TAIR|locus:2164885 AT5G39600 "AT5G39600" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 93/127 (73%), Positives = 106/127 (83%)

Query:     1 MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTF 60
             MLKFLSKVRIEFN LDPR+ASC+EFLAQCNA KAKESNP CQ+ VKRRTD+ PP+I VTF
Sbjct:     1 MLKFLSKVRIEFNTLDPRLASCVEFLAQCNARKAKESNPNCQVLVKRRTDEQPPQITVTF 60

Query:    61 VTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKP 120
             V G EE FDA +TSA +IR MIL+KGQ LE EQMFR+AG  WPV+IPDEEL Q   G+KP
Sbjct:    61 VNGVEEAFDAAATSAQSIRKMILDKGQYLETEQMFREAGEQWPVIIPDEELLQEAPGVKP 120

Query:   121 RYAKEKK 127
             R A++KK
Sbjct:   121 RKAEDKK 127

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

FB|FBgn0050481 mRpL53 "mitochondrial ribosomal protein L53" [Drosophila melanogaster (taxid:7227)]

 Score = 91 (37.1 bits), Expect = 0.00062, P = 0.00062
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query:     2 LKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFV 61
             LK + ++ ++F+     + S  EFL   + PK   +NP C ++ +   D  P  IK   +
Sbjct:    28 LKGVKRITVQFDPFAENVKSTREFLFLLSTPKVAATNPKCVVKPEIVCDRQPANIKFALI 87

Query:    62 TGAEE 66
               A+E
Sbjct:    88 DSAQE 92


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       128   0.00091  102 3  11 22  0.39    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  128 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.00u 0.13s 13.13t   Elapsed:  00:00:00
  Total cpu time:  13.00u 0.13s 13.13t   Elapsed:  00:00:00
  Start:  Mon May 20 20:52:08 2013   End:  Mon May 20 20:52:08 2013

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0032543 "mitochondrial translation" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014463001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (128 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
pfam10780	51	pfam10780, MRP_L53, 39S ribosomal protein L53/MRP-	2e-04

>gnl|CDD|192665 pfam10780, MRP_L53, 39S ribosomal protein L53/MRP-L53

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 12 FNALDPRIASCMEFLAQ-CNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTG 63
          FN   P   S   FL+    + KA+ +N  C++  +  T   PPE+KVTF  G
Sbjct: 1  FNPFSPNARSARLFLSLIPPSAKARGTNINCEVLPRVSTS--PPEVKVTFKDG 51

MRP-L53 is also known as Mrp144. It is part of the 39S ribosome. Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
PF10780	51	MRP_L53: 39S ribosomal protein L53/MRP-L53; InterP	99.74
KOG3445	145	consensus Mitochondrial/chloroplast ribosomal prot	99.13
PF05047	52	L51_S25_CI-B8: Mitochondrial ribosomal protein L51	98.45
KOG3446	97	consensus NADH:ubiquinone oxidoreductase NDUFA2/B8	96.79
KOG4079	169	consensus Putative mitochondrial ribosomal protein	96.32
PF14009	181	DUF4228: Domain of unknown function (DUF4228)	89.35

>PF10780 MRP_L53: 39S ribosomal protein L53/MRP-L53; InterPro: IPR019716 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.74  E-value=1.4e-18  Score=110.60  Aligned_cols=50  Identities=30%  Similarity=0.531  Sum_probs=48.4

Q ss_pred             ecCCCCCcHHHHHHHhhc-CchhhhhcCCCceEEEEecCCCCCCeEEEEeeCC
Q 033063           12 FNALDPRIASCMEFLAQC-NAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTG   63 (128)
Q Consensus        12 FnPF~~~aksaR~FL~~i-~~~k~r~sNp~c~I~~~v~~d~~~P~I~Vtf~dG   63 (128)
                      ||||++++++||+||++| ++.+++.+|++|+|.++++  +++|+|+|+|+||
T Consensus         1 FnPF~~~aksaR~FL~~ip~s~k~~~tni~~~vl~~~~--~~~P~v~V~fkdg   51 (51)
T PF10780_consen    1 FNPFSPNAKSARLFLSLIPPSAKARGTNINCEVLPRVS--RSEPSVTVTFKDG   51 (51)
T ss_pred             CCCCCcccHHHHHHHHhcCCccccccCCCceEEecCCC--CCCCeEEEEeccC
Confidence            899999999999999999 8999999999999999999  7999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Mitochondrial ribosomal protein L53 (also known as L44) is part of the 39S ribosome [].

>KOG3445 consensus Mitochondrial/chloroplast ribosomal protein 36a [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=5e-10  Score=84.24  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=77.0

Q ss_pred             CccceEEEEEecCCCCCcHHHHHHHhhcCchhhhhcCCCceEEEEecCCCCCCeEEEEeeCCcEEEEecCCCCHHHHHHH
Q 033063            2 LKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSM   81 (128)
Q Consensus         2 lK~lkkV~V~FnPF~~~aksaR~FL~~i~~~k~r~sNp~c~I~~~v~~d~~~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~   81 (128)
                      +.++++|+|+||=++++++.+|+||..- .+.+.+.||+++|-++.+.. ++|.|...|-||.+.++++.||+..||...
T Consensus        20 v~ql~rit~sfCnwggSSrGmR~Fle~~-L~~~a~enP~v~i~v~~rrg-~hP~lraeY~NGre~vicvrnms~eevs~~   97 (145)
T KOG3445|consen   20 VWQLRRITVSFCNWGGSSRGMREFLESE-LPDLARENPGVVIYVEPRRG-QHPLLRAEYLNGRERVICVRNMSQEEVSKK   97 (145)
T ss_pred             hheeeEEEEEEecCCCccHHHHHHHHHH-HHHHHhhCCCeEEEEeccCC-CCceEEEEecCCceEEEeeccCCHHHHHHH
Confidence            3578999999999999999999999985 67788899999999999977 899999999999999999999999999988


Q ss_pred             HHHhccc
Q 033063           82 ILEKGQM   88 (128)
Q Consensus        82 i~~~s~~   88 (128)
                      ++..-.+
T Consensus        98 ~~lL~ds  104 (145)
T KOG3445|consen   98 ATLLRDS  104 (145)
T ss_pred             HHHHhcc
Confidence            7765444

>PF05047 L51_S25_CI-B8: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ; InterPro: IPR007741 Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25

Probab=98.45  E-value=5.2e-07  Score=56.26  Aligned_cols=52  Identities=31%  Similarity=0.569  Sum_probs=36.3

Q ss_pred             HHHHHhhcCchhhhhcCCCceEEEEecCCCCCCeEEEEeeCCcEEEEecCCCCH
Q 033063           22 CMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATSTSA   75 (128)
Q Consensus        22 aR~FL~~i~~~k~r~sNp~c~I~~~v~~d~~~P~I~Vtf~dG~e~~~d~~~~t~   75 (128)
                      +|.||.. .-+.++..||+++|.+... ...+|.|.+.|.||.+..+|++|++.
T Consensus         1 ~R~F~~~-~lp~l~~~NP~v~~~v~~~-~~~~P~~~~~y~~G~~~~i~~~n~~~   52 (52)
T PF05047_consen    1 ARDFLKN-NLPTLKYHNPQVQFEVRRR-RGRHPFLTAEYLNGREKTIDVKNKSS   52 (52)
T ss_dssp             HHHHHHH-THHHHHHHSTT--EEEE----SSS-EEEEEESS--EEEEE-TT---
T ss_pred             CHhHHHH-hHHHHHHHCCCcEEEEEEC-CCCCCEEEEEEcCCCEEEEECCCCCC
Confidence            6999977 6688899999999999994 44789999999999999999999863

This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) 1.6.5.3 from EC. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins.; PDB: 1S3A_A.

>KOG3446 consensus NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit [Energy production and conversion]

Probab=96.79  E-value=0.0019  Score=45.74  Aligned_cols=81  Identities=21%  Similarity=0.296  Sum_probs=68.7

Q ss_pred             ccceEEEEEecCCCCCcHHHHHHHhhcCchhhhhcCCCceEEEEecCCCCCCeEEEEeeCCcEEEEecCCCCHHHHHHHH
Q 033063            3 KFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSMI   82 (128)
Q Consensus         3 K~lkkV~V~FnPF~~~aksaR~FL~~i~~~k~r~sNp~c~I~~~v~~d~~~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i   82 (128)
                      ..++.++|--|+=++.++.+|+|+..-- ...++.||+.-|-.. -|+.--|.+-..|.+|.|..+.-+|++..+|...+
T Consensus        13 ~~lkElRI~lcqkspaSagvR~fvEk~Y-~~lKkaNP~lPILIR-EcSgVqPrl~ARY~~G~E~~v~L~~~s~~~i~kal   90 (97)
T KOG3446|consen   13 LKLKELRIHLCQKSPASAGVREFVEKFY-VNLKKANPDLPILIR-ECSGVQPRLWARYGNGVERSVSLANLSAPQIHKAL   90 (97)
T ss_pred             hhhhhheeeecCCCCcchhHHHHHHHhh-hhhhhcCCCCcEeeh-hhcCCchHHHHHhcCCceEEeehhhcchHHHHHHH
Confidence            4588999999999999999999999855 557899998877432 35568999999999999999999999999998776


Q ss_pred             HHh
Q 033063           83 LEK   85 (128)
Q Consensus        83 ~~~   85 (128)
                      ...
T Consensus        91 e~l   93 (97)
T KOG3446|consen   91 ENL   93 (97)
T ss_pred             HHH
Confidence            543

>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]

Probab=96.32  E-value=0.0058  Score=46.78  Aligned_cols=78  Identities=18%  Similarity=0.321  Sum_probs=64.6

Q ss_pred             eEEEEEecCCCCCcHHHHHHHhhcCchhhhhcCCCceEEEEecCCCCCCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHh
Q 033063            6 SKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSMILEK   85 (128)
Q Consensus         6 kkV~V~FnPF~~~aksaR~FL~~i~~~k~r~sNp~c~I~~~v~~d~~~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~   85 (128)
                      +=.+|.||-.++.-..||.|..- +-++++=.||..++-. ..+-...|.+..-|.||.++.||.+.++-.||.+++..-
T Consensus        29 ~vfsvnynt~g~~~~GARdFVfw-NipQiQykNP~VQ~~~-~knmtpsPF~R~YlddGr~vL~Dld~~~r~eI~~hl~K~  106 (169)
T KOG4079|consen   29 NVFSVNYNTNGPEQSGARDFVFW-NIPQIQYKNPKVQLVK-HKNMTPSPFARAYLDDGREVLFDLDGMKREEIEKHLAKT  106 (169)
T ss_pred             eEEEEeccCCCccccCccceEEe-cchhhcccCCceEEEe-eccCCCChHHHheecCcceEEEEcccccHHHHHHHHHHH
Confidence            34589999999999999999887 5577777799777643 233478899999999999999999999999999887653

>PF14009 DUF4228: Domain of unknown function (DUF4228)

Probab=89.35  E-value=0.37  Score=35.17  Aligned_cols=60  Identities=23%  Similarity=0.168  Sum_probs=46.0

Q ss_pred             CCCCCCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhccccchHHHHHhcCCCCCcccCccccc
Q 033063           49 TDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQ  112 (128)
Q Consensus        49 ~d~~~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s~~L~~~e~~~~~g~~~~~~~p~e~~~  112 (128)
                      .....-.|+|-+.||+.++|+. -+++.||+...=.|.=   +.......|..|++|.|+|+|.
T Consensus        11 ~~~~~~~vkvv~~~G~v~~~~~-pv~a~evm~~~P~h~v---~~~~~~~~~~~~~~l~~d~~L~   70 (181)
T PF14009_consen   11 SSSSAATVKVVHPDGKVEEFKR-PVTAAEVMLENPGHFV---CDSDSFRFGRRIKPLPPDEELQ   70 (181)
T ss_pred             ccCCCceEEEEcCCCcEEEeCC-CcCHHHHHHHCCCCEE---eccccccCCCcccCCCccCeec
Confidence            4457889999999999999965 6999999888766641   1111223589999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
1s3a_A	102	NADH-ubiquinone oxidoreductase B8 subunit; CI-B8,	99.62

>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22

Probab=99.62  E-value=3.1e-15  Score=104.94  Aligned_cols=80  Identities=19%  Similarity=0.303  Sum_probs=74.0

Q ss_pred             ceEEEEEecCCCCCcHHHHHHHhhcCchhhhhcCCCceEEEEecCCCCCCeEEEEeeCCcEEEEecCCCCHHHHHHHHHH
Q 033063            5 LSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSMILE   84 (128)
Q Consensus         5 lkkV~V~FnPF~~~aksaR~FL~~i~~~k~r~sNp~c~I~~~v~~d~~~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~   84 (128)
                      |++|+|.||+++++++++|+||.. .-+.++..||+|.|.+.... ..+|.|.+.|.||.+..+|++|++..||.+.+..
T Consensus        19 lk~l~~~yc~~~~sS~G~R~Fl~~-~l~~~k~~NP~v~i~v~~~~-~~~P~i~a~Y~~G~ek~i~l~n~s~~eI~~~l~~   96 (102)
T 1s3a_A           19 LREIRIHLCQRSPGSQGVRDFIEK-RYVELKKANPDLPILIRECS-DVQPKLWARYAFGQETNVPLNNFSADQVTRALEN   96 (102)
T ss_dssp             EEEEEEECCSSSCCCHHHHHHHHH-THHHHHHHSTTCCEEEECCC-SSSCEEEEEESSCCEEEEECTTCCHHHHHHHHHH
T ss_pred             eeEEEEEEcCCCCCchhHHHHHHH-hhHHHHHHCCCceEEEEECC-CCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHH
Confidence            999999999999999999999997 78999999999999976444 5899999999999999999999999999999887


Q ss_pred             hc
Q 033063           85 KG   86 (128)
Q Consensus        85 ~s   86 (128)
                      ..
T Consensus        97 l~   98 (102)
T 1s3a_A           97 VL   98 (102)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d1s3aa1	85	c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase	4e-05

>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Mitochondrial ribosomal protein L51/S25/CI-B8 domain
domain: NADH-ubiquinone oxidoreductase b8 subunit, CI-B8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (87), Expect = 4e-05
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 5  LSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGA 64
          L ++RI      P      +F+ +    + K++NP   I ++  +D   P++   +  G 
Sbjct: 2  LREIRIHLCQRSPGSQGVRDFIEK-RYVELKKANPDLPILIRECSDVQ-PKLWARYAFGQ 59

Query: 65 EEVFDATSTSA 75
          E      + SA
Sbjct: 60 ETNVPLNNFSA 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d1s3aa1	85	NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {	99.52

>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Mitochondrial ribosomal protein L51/S25/CI-B8 domain
domain: NADH-ubiquinone oxidoreductase b8 subunit, CI-B8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.9e-14  Score=94.95  Aligned_cols=78  Identities=19%  Similarity=0.336  Sum_probs=73.4

Q ss_pred             ceEEEEEecCCCCCcHHHHHHHhhcCchhhhhcCCCceEEEEecCCCCCCeEEEEeeCCcEEEEecCCCCHHHHHHHHHH
Q 033063            5 LSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSMILE   84 (128)
Q Consensus         5 lkkV~V~FnPF~~~aksaR~FL~~i~~~k~r~sNp~c~I~~~v~~d~~~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~   84 (128)
                      |++|+++||+.+++++++|+|+.. .-+.++..||++.|.+..+.. .+|.|.+.|.||.+..++.++++..||.+.|..
T Consensus         2 Lk~l~~~yc~~~~sS~G~R~Fi~~-~l~~~~~~NP~v~i~v~~~~~-~~P~l~a~y~nG~e~~i~l~n~~~~eI~~~l~~   79 (85)
T d1s3aa1           2 LREIRIHLCQRSPGSQGVRDFIEK-RYVELKKANPDLPILIRECSD-VQPKLWARYAFGQETNVPLNNFSADQVTRALEN   79 (85)
T ss_dssp             EEEEEEECCSSSCCCHHHHHHHHH-THHHHHHHSTTCCEEEECCCS-SSCEEEEEESSCCEEEEECTTCCHHHHHHHHHH
T ss_pred             ceEEEEEEcCCCCCcHHHHHHHHH-hHHHHHHHCCCceEEEEEcCC-CCCEEEEEEcCCcEEEEECCCCCHHHHHHHHHH
Confidence            789999999999999999999999 578899999999999998865 899999999999999999999999999998865