Citrus Sinensis ID: 033081

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MAANILTFRPAGVQVYATWSGHRNPDGKRRKNASSNWWSPLFGWSSEADYIDSESKPENRSESDLEAKSSRSSRFSPGCFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLASDFKIRSDRELETHEK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEccccccEEEEcccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHccccc
Coil and Loop (DISEMBL)
maaniltfrpaGVQVYATwsghrnpdgkrrknassnwwsplfgwsseadyidseskpenrsesdleakssrssrfspgcfteEKAKQLRLMTKDTASFHDAMYHSAIASRLASdfkirsdrelethek
Flexible Loop (DISEMBL)
maaniltfrpagvqvyatwsghrnpdgkrrknassnwwsPLFGWSSEADYIDSeskpenrsesdleakssrssrfspgcfTEEKAKQLRLMTKDTASFHDAMYHSAIASRLASDFKIRSDRELETHEK
Low Complexity Region (SEG)
MAANILTFRPAGVQVYATWSGHRNPDGKRRKNASSNWWSPLFGWSSEADYIDSESKPENRSESDLEAKSSRSSRFSPGCFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLASDFKIRSDRELETHEK
Disordered region (IsUnstruct)
****ILTFRPAGVQVYATWS***************NWWSPLFGWSS***************************************************FHDAMYHSAI*********************
Disordered Region (DISOPRED)
************************************WWSPLFGWSSEAD**********************************************ASFHDAMYHSAIASRLA****************
Disordered Region (DISEMBL)
MAANILTFRPAGVQVYATWSGH***********SSNWWSPLFGWSSEAD****************************GCFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLASDFKIRSD********
Disordered Region (DISPRO)
**ANILTFRPAGVQVYAT******************WWS***GWSSEAD*ID**************************C*TEE**KQLRLMTKDTASFHDAMYHSAIASRL*S***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAANILTFRPAGVQVYATWSGHRNPDGKRRKNASSNWWSPLFGWSSEADYIDSESKPENRSESDLEAKSSRSSRFSPGCFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLASDFKIRSDRELETHEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
359484646	121	PREDICTED: uncharacterized protein LOC10	0.882	0.933	0.624	7e-34
315937290	128	hypothetical protein [Jatropha curcas]	0.937	0.937	0.596	2e-32
358248696	123	uncharacterized protein LOC100780553 [Gl	0.890	0.926	0.593	9e-29
255566909	125	conserved hypothetical protein [Ricinus	0.937	0.96	0.579	4e-28
357477921	113	hypothetical protein MTR_4g113600 [Medic	0.765	0.867	0.696	2e-26
225442809	119	PREDICTED: uncharacterized protein LOC10	0.867	0.932	0.542	4e-25
351725191	123	uncharacterized protein LOC100306235 [Gl	0.890	0.926	0.585	3e-24
147768005	119	hypothetical protein VITISV_030821 [Viti	0.875	0.941	0.529	5e-24
388497552	113	unknown [Medicago truncatula]	0.765	0.867	0.647	6e-24
356526179	120	PREDICTED: uncharacterized protein LOC10	0.875	0.933	0.504	7e-23

>gi|359484646|ref|XP_003633137.1| PREDICTED: uncharacterized protein LOC100854031 [Vitis vinifera]

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 94/125 (75%), Gaps = 12/125 (9%)

Query: 1   MAANILTFRPAGVQVYATWSGHRNPDGKRRKNASSNWWSPLFGWSSEADYIDSESKPEN- 59
           MA ++++FRP G++  A      + D  RR + SSNWW+PLFGWS + DYID E+K  N 
Sbjct: 3   MATDLISFRPIGIRACAA-----SCDSHRR-STSSNWWTPLFGWSPDPDYIDPETKTPNP 56

Query: 60  ----RSESDLEAKSSRSSRFSPGCFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLASDF 115
               RSE DLE K+SRS R++PGCFTEEKAKQLRL+T  T+SFHDAMYHSAIASRLASDF
Sbjct: 57  VAQSRSEQDLETKTSRS-RYAPGCFTEEKAKQLRLVTTSTSSFHDAMYHSAIASRLASDF 115

Query: 116 KIRSD 120
           K RSD
Sbjct: 116 KKRSD 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315937290|gb|ADU56195.1| hypothetical protein [Jatropha curcas]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 94/129 (72%), Gaps = 9/129 (6%)

Query: 1   MAANILTFRPAGVQVYATWSGHR-NPDGKRRKNASSNWWSPLFGWSSEADYIDSESKPEN 59
           MAANIL      ++  A     R +P G++  ++S NWW PLFGWSSEADYI SE+KP++
Sbjct: 1   MAANILPLNSVTIRARAGPGSQRPDPHGRKSSSSSGNWWXPLFGWSSEADYIGSENKPQD 60

Query: 60  -------RSESDLEAKSSRSSRFSPGCFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLA 112
                  RSESDL +K  RS RF+PG FTEEKA+QLR+MT +T+SFHD MYHSAIASRLA
Sbjct: 61  MQEKEDGRSESDLSSKPVRS-RFAPGGFTEEKARQLRMMTNETSSFHDVMYHSAIASRLA 119

Query: 113 SDFKIRSDR 121
           SDFK RS+R
Sbjct: 120 SDFKHRSER 128

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248696|ref|NP_001239669.1| uncharacterized protein LOC100780553 [Glycine max] gi|255640770|gb|ACU20669.1| unknown [Glycine max]

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/128 (59%), Positives = 92/128 (71%), Gaps = 14/128 (10%)

Query: 1   MAANILTFRPAGVQVYATWSGHRNPDGKRRKNASSNWWSPLFGWSSEADYIDSE------ 54
           MAA+ +  R AG+Q  AT SGHR  D  RR+ +S++WW+PLFGWSSE DYIDS       
Sbjct: 1   MAASSIPIRVAGIQPCAT-SGHRRTDPDRRRASSTSWWTPLFGWSSEPDYIDSNNRASSL 59

Query: 55  --SKPENRSESDLEAKSSRSSRFSPGCFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLA 112
             +KPE  + +  E+K+ R  RF+ GCFTEEKAKQLR+MT  + SFHD MYHSAIASRLA
Sbjct: 60  QRTKPEPVTAA-TESKAPR-PRFA-GCFTEEKAKQLRMMT--SKSFHDTMYHSAIASRLA 114

Query: 113 SDFKIRSD 120
           SDFK RSD
Sbjct: 115 SDFKARSD 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566909|ref|XP_002524437.1| conserved hypothetical protein [Ricinus communis] gi|223536225|gb|EEF37877.1| conserved hypothetical protein [Ricinus communis]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 89/126 (70%), Gaps = 6/126 (4%)

Query: 1   MAANILTFRPAGVQVYATWSGHRNPDGKRRKNASSNWWSPLFGWSSEADYIDSESKPENR 60
           MA N+L   P  ++         +P  ++  + SSNWW+PLFG SSEADYI SE K + R
Sbjct: 1   MATNLLPSTPLMIRASTGPVQKPDPSRRKSSSYSSNWWTPLFGMSSEADYIGSEPKADGR 60

Query: 61  ----SESDLEAKSSRSSRFSPGCFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLASDF- 115
               SESDL+ K +RS RF+PG FTEEKAKQLR++T +T+SFHD MYHSAIASRLASDF 
Sbjct: 61  KEETSESDLDPKPARS-RFTPGAFTEEKAKQLRMLTTETSSFHDVMYHSAIASRLASDFN 119

Query: 116 KIRSDR 121
           K RSDR
Sbjct: 120 KRRSDR 125

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477921|ref|XP_003609246.1| hypothetical protein MTR_4g113600 [Medicago truncatula] gi|355510301|gb|AES91443.1| hypothetical protein MTR_4g113600 [Medicago truncatula]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 79/102 (77%), Gaps = 4/102 (3%)

Query: 20  SGHRNPDGKRRKNASS-NWWSPLFGWSSEADYIDSESKPENRSESDLEAKSSRSSRFSPG 78
           SGHR PD  RR+N+SS NWW+PLFG SSE DYIDS++K   +SESD  +K S+  RFS G
Sbjct: 14  SGHRIPDPDRRRNSSSTNWWTPLFGMSSEPDYIDSDNK-APKSESDPSSKPSQL-RFS-G 70

Query: 79  CFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLASDFKIRSD 120
             TEEKAKQLR MT  T SFHD MYHSAIASRLASDFK RSD
Sbjct: 71  GLTEEKAKQLRKMTVGTESFHDTMYHSAIASRLASDFKARSD 112

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442809|ref|XP_002285278.1| PREDICTED: uncharacterized protein LOC100244679 [Vitis vinifera]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 78/118 (66%), Gaps = 7/118 (5%)

Query: 1   MAANILTFRPAGVQVYATWSGHRNPDGKRRKNASSNWWSPLFGWSSEADYIDSESKPENR 60
           MA+ +  F P G++  A  SG R  D  RR+ +   WWSP+FGWSS+ DYI  ES    +
Sbjct: 1   MASTLFVFNPTGIRASAV-SGPRKLDQNRRRASQPTWWSPIFGWSSDPDYIVGESA--EK 57

Query: 61  SESDLEAKSSRS----SRFSPGCFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLASD 114
           S   LE K S +    SRF+ GCFTEEKAKQLR  T ++ASFHD MYHS+IASRLASD
Sbjct: 58  SAGALEGKDSETARSRSRFTLGCFTEEKAKQLRRKTMESASFHDIMYHSSIASRLASD 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725191|ref|NP_001235804.1| uncharacterized protein LOC100306235 [Glycine max] gi|255627965|gb|ACU14327.1| unknown [Glycine max]

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 90/128 (70%), Gaps = 14/128 (10%)

Query: 1   MAANILTFRPAGVQVYATWSGHRNPDGKRRKNASSNWWSPLFGWSSEADYIDSE------ 54
           MAA  +  R AG+Q  AT SG R  D  RR+ +S+NWW+PLFGWSSE DYIDS       
Sbjct: 1   MAATSIPIRVAGIQACAT-SGRRRADPDRRRASSANWWTPLFGWSSEPDYIDSNNKASSL 59

Query: 55  --SKPENRSESDLEAKSSRSSRFSPGCFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLA 112
             +KPE  + ++ E+K+ R  RF+ G FTEEKAKQLR+MT +  SFHD MYHSAIASRLA
Sbjct: 60  QPAKPEPVT-AETESKAPR-PRFA-GGFTEEKAKQLRMMTSE--SFHDTMYHSAIASRLA 114

Query: 113 SDFKIRSD 120
           SDFK RSD
Sbjct: 115 SDFKSRSD 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768005|emb|CAN71657.1| hypothetical protein VITISV_030821 [Vitis vinifera]

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/119 (52%), Positives = 77/119 (64%), Gaps = 7/119 (5%)

Query: 1   MAANILTFRPAGVQVYATWSGHRNPDGKRRKNASSNWWSPLFGWSSEADYIDSESKPENR 60
           MA+ +  F P G++  A  SG R  D  RR+ +   WWSP+FGWSS+ DYI  ES    +
Sbjct: 1   MASTLSVFNPTGIRASAV-SGPRKLDQNRRRASQPTWWSPIFGWSSDPDYIVGESA--EK 57

Query: 61  SESDLEAKSSRS----SRFSPGCFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLASDF 115
           S    E K S +    SRF+ GCFTEEKAKQLR  T ++ASFHD MYHS+IASRLASD 
Sbjct: 58  SAGAQEGKDSETARSRSRFTLGCFTEEKAKQLRRKTMESASFHDIMYHSSIASRLASDV 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497552|gb|AFK36842.1| unknown [Medicago truncatula]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 72/102 (70%), Gaps = 4/102 (3%)

Query: 20  SGHRNPDGKRRKNASS-NWWSPLFGWSSEADYIDSESKPENRSESDLEAKSSRSSRFSPG 78
           SGHR PD  RR+N+SS NWW+PLFG SSE DYIDS++K          +  S   RFS G
Sbjct: 14  SGHRIPDPDRRRNSSSTNWWTPLFGMSSEPDYIDSDNKAPKSESD--PSSKSSQLRFS-G 70

Query: 79  CFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLASDFKIRSD 120
             TEEKAKQLR MT  T SFHD MYHSAIASRLASDFK RSD
Sbjct: 71  GLTEEKAKQLRKMTVGTESFHDTMYHSAIASRLASDFKARSD 112

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526179|ref|XP_003531697.1| PREDICTED: uncharacterized protein LOC100778751 [Glycine max]

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 73/115 (63%), Gaps = 3/115 (2%)

Query: 1   MAANILTFRPAGVQVYATWSGHRNPDGKRRKNASSNWWSPLFGWSSEADYIDSESKPENR 60
           MA     FRP  ++  A   G   PD   RK  SSNWW+PLFGW ++ DYI    K   +
Sbjct: 1   MATTFTFFRPTMIRASAGSPGR--PDPSNRKPVSSNWWAPLFGWPADPDYIGPSQKTSYQ 58

Query: 61  SESDLEAKSSRS-SRFSPGCFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLASD 114
           S+ + E    R  S+F+ GCFTE+KAK+LR  T +T++FHD MYHSAIASRLASD
Sbjct: 59  SDPEREVGPGRPRSKFAAGCFTEKKAKELRKKTVETSTFHDIMYHSAIASRLASD 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2035074	117	AT1G52720 "AT1G52720" [Arabido	0.703	0.769	0.536	3e-21
TAIR|locus:2093247	107	AT3G15630 "AT3G15630" [Arabido	0.671	0.803	0.553	1.5e-19

TAIR|locus:2035074 AT1G52720 "AT1G52720" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 52/97 (53%), Positives = 66/97 (68%)

Query:    20 SGHRNPDGKRRKNASSNWWSPLFGWSSEADYIDSESKPE--NRSESDLEAKSSRSSRFSP 77
             SG  NPD  R+K+A+  WW+PLFG  S+ DY++ ES     N  ++D+   S    +F  
Sbjct:    19 SGSLNPDQNRKKSAA--WWAPLFGLPSDPDYLNIESSCSTVNPDKTDI---SGSGQKFRR 73

Query:    78 GCFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLASD 114
             GCFTEEKAKQLR  T + ++FHD MYHSAIASRLASD
Sbjct:    74 GCFTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASD 110

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2093247 AT3G15630 "AT3G15630" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 52/94 (55%), Positives = 64/94 (68%)

Query:    26 DGKRRKNASS-NWWSPLFGWSSEADYIDSESKPENRSESDLEAKSSRSSRFSPGCFTEEK 84
             D  R+K  SS +WW+PLFG SSE DY++   K  N  ESDL+    RS R    C TEEK
Sbjct:    20 DPARKKPVSSVSWWAPLFGMSSEPDYVN---KTVNL-ESDLDKAEKRSLRC---CLTEEK 72

Query:    85 AKQLRLMTKDTASFHDAMYHSAIASRLASDFKIR 118
             AKQLR  T + ++FHD MYHSAIASRLASD +++
Sbjct:    73 AKQLRRKTAEASTFHDVMYHSAIASRLASDVRVK 106


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.124   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       128   0.00091  102 3  11 23  0.43    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  142 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.26u 0.19s 15.45t   Elapsed:  00:00:01
  Total cpu time:  15.26u 0.19s 15.45t   Elapsed:  00:00:01
  Start:  Fri May 10 13:37:36 2013   End:  Fri May 10 13:37:37 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016837001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (119 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
PF13991	73	BssS: BssS protein family	86.99

>PF13991 BssS: BssS protein family

Probab=86.99  E-value=0.75  Score=32.48  Aligned_cols=43  Identities=30%  Similarity=0.516  Sum_probs=29.5

Q ss_pred             cccCCCCC-----------CcccCCCCCCCCCchhhHhhhcCCCCCcCCCcccHHHHHHHHHHhh
Q 033081           40 PLFGWSSE-----------ADYIDSESKPENRSESDLEAKSSRSSRFSPGCFTEEKAKQLRLMTK   93 (128)
Q Consensus        40 PLfGWS~~-----------~DYi~~~~~~~~~~e~e~~~~~~r~srF~~G~lTEEKAkqLR~~~~   93 (128)
                      |+.||--.           .+|++........      +.  . .+|.  +||.|-||||...+.
T Consensus         2 Pv~GW~i~pv~~~dal~lrl~yls~~~q~~e~------a~--~-~~~~--~lT~e~Ar~Li~~L~   55 (73)
T PF13991_consen    2 PVTGWDIGPVDSYDALMLRLHYLSSPDQPPEE------AQ--V-GRTY--WLTTEMARQLISILE   55 (73)
T ss_pred             CcccceeccccccceeEEEecccCCCCCCccc------cc--c-Ccee--EecHHHHHHHHHHHH
Confidence            88899544           3888886655322      11  2 3565  799999999998764

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00