Citrus Sinensis ID: 033110

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MRLQSDVIRSGGFVLFIKISFLIMSNIARYCILVIVSQLNLRKSSLCLLMLSLIMMLDAQTTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTATSGGMA
Secondary Structure (PSIPRED)
cccccccHHcccEEEEHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHEEEHHHHEEcHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHcccHHHEEHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mrlqsdvirsgGFVLFIKISFLIMSNIARYCILVIVSQLNLRKSSLCLLMLSLIMMLDAQTTSKRLAVRKVDKFEknimkrgavpetttkkgkdypvgpvLLGFFVFVVIGSSLFQIIRTATSGGMA
Flexible Loop (DISEMBL)
mrlqsdvirsgGFVLFIKISFLIMSNIARYCILVIVSQLNLRKSSLCLLMLSLIMMLDAqttskrlavrkvdkfeknimkrgavpetttkkgkdypvGPVLLGFFVFVVIGSSLFQIIRTATSGGMA
Low Complexity Region (SEG)
MRLQSDVIRSGGFVLFIKISFLIMSNIARYCILVIVSQlnlrksslcllmlslimmlDAQTTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYpvgpvllgffvfvvIGSSLFQIIRTATSGGMA
Disordered region (IsUnstruct)
******VIRSGGFVLFIKISFLIMSNIARYCILVIVSQLNLRKSSLCLLMLSLIMMLDAQTTSKRLAVRKVDKFEKNIMKRG********KGKDYPVGPVLLGFFVFVVIGSSLFQIIRT*******
Disordered Region (DISOPRED)
******VIRSGGFVLFIKISFLIMSNIARYCILVIVSQLNLRKSSLCLLMLSLIMMLDA****************************************VLLGFFVFVVIGSSLFQIIRTATSGG**
Disordered Region (DISEMBL)
MRLQSDVIRSGGFVLFIKISFLIMSNIARYCILVIVSQLNLRKSSLCLLMLSLIMMLDAQTTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTATSGGMA
Disordered Region (DISPRO)
****SDVIRSGGFVLFIKISFLIMSNIARYCILVIVSQLNLRKSSLCLLMLSLIMMLDAQTTSKRLAVRKVDKFEKNIMKRGAVPETTT*KGKDYPVGPVLLGFFVFVVIGSSLFQIIRTATS****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLQSDVIRSGGFVLFIKISFLIMSNIARYCILVIVSQLNLRKSSLCLLMLSLIMMLDAQTTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTATSGGMA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
Q6TAW2	65	Stress-associated endopla	yes	no	0.417	0.815	0.509	1e-08
Q8N6R1	65	Stress-associated endopla	yes	no	0.417	0.815	0.509	1e-08
Q3T073	65	Stress-associated endopla	yes	no	0.417	0.815	0.509	1e-08
Q5REZ1	66	Stress-associated endopla	no	no	0.385	0.742	0.48	3e-06
Q9R2C1	66	Stress-associated endopla	no	no	0.385	0.742	0.46	1e-05
Q9Z1W5	66	Stress-associated endopla	no	no	0.385	0.742	0.46	1e-05
Q9Y6X1	66	Stress-associated endopla	no	no	0.385	0.742	0.46	1e-05
Q3ZBR1	66	Stress-associated endopla	no	no	0.385	0.742	0.46	1e-05
Q553P6	59	Probable stress-associate	yes	no	0.440	0.949	0.379	0.0002

>sp|Q6TAW2|SERP2_MOUSE Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus GN=Serp2 PE=3 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 36/53 (67%)

Query: 72  DKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTATSG 124
           +K  KNI +RG V +T   + + YPVGP LL  FVFVV GS++FQII++   G
Sbjct: 12  EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation.
Mus musculus (taxid: 10090)

>sp|Q8N6R1|SERP2_HUMAN Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens GN=SERP2 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 36/53 (67%)

Query: 72  DKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTATSG 124
           +K  KNI +RG V +T   + + YPVGP LL  FVFVV GS++FQII++   G
Sbjct: 12  EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation.

Homo sapiens (taxid: 9606)

>sp|Q3T073|SERP2_BOVIN Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus GN=SERP2 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 36/53 (67%)

Query: 72  DKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTATSG 124
           +K  KNI +RG V +T   + + YPVGP LL  FVFVV GS++FQII++   G
Sbjct: 12  EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation.

Bos taurus (taxid: 9913)

>sp|Q5REZ1|SERP1_PONAB Stress-associated endoplasmic reticulum protein 1 OS=Pongo abelii GN=SERP1 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 72  DKFEKNIMKRGAVPETT-TKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRT 120
           +K  KNI +RG V +T+    G+   VGP LL  F+FVV GS++FQII++
Sbjct: 12  EKHSKNITQRGNVAKTSRNAPGEKASVGPWLLALFIFVVCGSAIFQIIQS 61

Interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. Protects unfolded target proteins against degradation during ER stress. May facilitate glycosylation of target proteins after termination of ER stress. May modulate the use of N-glycosylation sites on target proteins.

Pongo abelii (taxid: 9601)

>sp|Q9R2C1|SERP1_RAT Stress-associated endoplasmic reticulum protein 1 OS=Rattus norvegicus GN=Serp1 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 72  DKFEKNIMKRGAVPETTTKKGKDYP-VGPVLLGFFVFVVIGSSLFQIIRT 120
           +K  KNI +RG V +T+    ++   VGP LL  F+FVV GS++FQII++
Sbjct: 12  EKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQS 61

Interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. Protects unfolded target proteins against degradation during ER stress. May facilitate glycosylation of target proteins after termination of ER stress. May modulate the use of N-glycosylation sites on target proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z1W5|SERP1_MOUSE Stress-associated endoplasmic reticulum protein 1 OS=Mus musculus GN=Serp1 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 72  DKFEKNIMKRGAVPETTTKKGKDYP-VGPVLLGFFVFVVIGSSLFQIIRT 120
           +K  KNI +RG V +T+    ++   VGP LL  F+FVV GS++FQII++
Sbjct: 12  EKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQS 61

Interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. Protects unfolded target proteins against degradation during ER stress. May facilitate glycosylation of target proteins after termination of ER stress. May modulate the use of N-glycosylation sites on target proteins.

Mus musculus (taxid: 10090)

>sp|Q9Y6X1|SERP1_HUMAN Stress-associated endoplasmic reticulum protein 1 OS=Homo sapiens GN=SERP1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 72  DKFEKNIMKRGAVPETTTKKGKDYP-VGPVLLGFFVFVVIGSSLFQIIRT 120
           +K  KNI +RG V +T+    ++   VGP LL  F+FVV GS++FQII++
Sbjct: 12  EKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQS 61

Interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. Protects unfolded target proteins against degradation during ER stress. May facilitate glycosylation of target proteins after termination of ER stress. May modulate the use of N-glycosylation sites on target proteins.

Homo sapiens (taxid: 9606)

>sp|Q3ZBR1|SERP1_BOVIN Stress-associated endoplasmic reticulum protein 1 OS=Bos taurus GN=SERP1 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 72  DKFEKNIMKRGAVPETTTKKGKDYP-VGPVLLGFFVFVVIGSSLFQIIRT 120
           +K  KNI +RG V +T+    ++   VGP LL  F+FVV GS++FQII++
Sbjct: 12  EKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQS 61

Interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. Protects unfolded target proteins against degradation during ER stress. May facilitate glycosylation of target proteins after termination of ER stress. May modulate the use of N-glycosylation sites on target proteins.

Bos taurus (taxid: 9913)

>sp|Q553P6|SERP_DICDI Probable stress-associated endoplasmic reticulum protein OS=Dictyostelium discoideum GN=serp PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 62  TSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIR 119
           +  R   +K  K+++NI KRG    +  KK     + P +LGF +FVV+GS+L QI++
Sbjct: 2   SQSRTLRQKSQKYQENIEKRGVA--SPKKKEDGLNINPYVLGFIIFVVVGSTLLQILK 57

May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
388500206	68	unknown [Medicago truncatula]	0.527	0.985	0.925	1e-27
297738467	477	unnamed protein product [Vitis vinifera]	0.527	0.140	0.895	2e-27
282848232	68	membrane protein [Jatropha curcas]	0.527	0.985	0.910	2e-27
9802529	77	F17L21.12 [Arabidopsis thaliana]	0.543	0.896	0.869	3e-27
217075430	68	unknown [Medicago truncatula]	0.527	0.985	0.910	4e-27
18396294	68	Ribosome associated membrane protein RAM	0.527	0.985	0.895	6e-27
255547690	68	stress associated endoplasmic reticulum	0.527	0.985	0.880	9e-27
356512383	68	PREDICTED: stress-associated endoplasmic	0.527	0.985	0.910	1e-26
225425396	68	PREDICTED: stress-associated endoplasmic	0.527	0.985	0.895	1e-26
449468850	68	PREDICTED: stress-associated endoplasmic	0.527	0.985	0.865	2e-26

>gi|388500206|gb|AFK38169.1| unknown [Medicago truncatula]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/67 (92%), Positives = 64/67 (95%)

Query: 61  TTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRT 120
           TTSKRLAVRKV+KFEKNI KRG+VPETT KKG DYPVGPVLLGFFVFVVIGSSLFQIIRT
Sbjct: 2   TTSKRLAVRKVEKFEKNITKRGSVPETTVKKGNDYPVGPVLLGFFVFVVIGSSLFQIIRT 61

Query: 121 ATSGGMA 127
           ATSGGMA
Sbjct: 62  ATSGGMA 68

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738467|emb|CBI27668.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/67 (89%), Positives = 64/67 (95%)

Query: 61  TTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRT 120
           TTS+RLA RKV+KFEKNI KRG+VPETTTKKG DYPVGPVLLGFFVFVVIGSSLFQIIRT
Sbjct: 411 TTSRRLADRKVEKFEKNITKRGSVPETTTKKGSDYPVGPVLLGFFVFVVIGSSLFQIIRT 470

Query: 121 ATSGGMA 127
           ATSGG+A
Sbjct: 471 ATSGGVA 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|282848232|gb|ADB02897.1| membrane protein [Jatropha curcas]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/67 (91%), Positives = 64/67 (95%)

Query: 61  TTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRT 120
           TTS+RLA RKV+KFEKNI KRGAVPETTTKK KDYPVGPVLLGFF+FVVIGSSLFQIIRT
Sbjct: 2   TTSRRLADRKVEKFEKNITKRGAVPETTTKKAKDYPVGPVLLGFFIFVVIGSSLFQIIRT 61

Query: 121 ATSGGMA 127
           ATSGGMA
Sbjct: 62  ATSGGMA 68

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9802529|gb|AAF99731.1|AC004557_10 F17L21.12 [Arabidopsis thaliana]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 65/69 (94%)

Query: 59  AQTTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQII 118
             TTSKRLA RK++KF+KNI+KRG VPETTTKKGKDYPVGP+LLGFFVFVVIGSSLFQII
Sbjct: 9   TNTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQII 68

Query: 119 RTATSGGMA 127
           RTATSGGMA
Sbjct: 69  RTATSGGMA 77

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075430|gb|ACJ86075.1| unknown [Medicago truncatula]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/67 (91%), Positives = 63/67 (94%)

Query: 61  TTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRT 120
           TTSKRLAVRKV+KFEKN  KRG+VPETT KKG DYPVGPVLLGFFVFVVIGSSLFQIIRT
Sbjct: 2   TTSKRLAVRKVEKFEKNTTKRGSVPETTVKKGNDYPVGPVLLGFFVFVVIGSSLFQIIRT 61

Query: 121 ATSGGMA 127
           ATSGGMA
Sbjct: 62  ATSGGMA 68

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396294|ref|NP_564277.1| Ribosome associated membrane protein RAMP4 [Arabidopsis thaliana] gi|18396300|ref|NP_564279.1| Ribosome associated membrane protein RAMP4 [Arabidopsis thaliana] gi|297845682|ref|XP_002890722.1| hypothetical protein ARALYDRAFT_472929 [Arabidopsis lyrata subsp. lyrata] gi|297851160|ref|XP_002893461.1| hypothetical protein ARALYDRAFT_472931 [Arabidopsis lyrata subsp. lyrata] gi|27754570|gb|AAO22732.1| unknown protein [Arabidopsis thaliana] gi|28393875|gb|AAO42345.1| unknown protein [Arabidopsis thaliana] gi|28416573|gb|AAO42817.1| At1g27330 [Arabidopsis thaliana] gi|110743217|dbj|BAE99499.1| hypothetical protein [Arabidopsis thaliana] gi|297336564|gb|EFH66981.1| hypothetical protein ARALYDRAFT_472929 [Arabidopsis lyrata subsp. lyrata] gi|297339303|gb|EFH69720.1| hypothetical protein ARALYDRAFT_472931 [Arabidopsis lyrata subsp. lyrata] gi|332192686|gb|AEE30807.1| Ribosome associated membrane protein RAMP4 [Arabidopsis thaliana] gi|332192688|gb|AEE30809.1| Ribosome associated membrane protein RAMP4 [Arabidopsis thaliana]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/67 (89%), Positives = 65/67 (97%)

Query: 61  TTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRT 120
           TTSKRLA RK++KF+KNI+KRG VPETTTKKGKDYPVGP+LLGFFVFVVIGSSLFQIIRT
Sbjct: 2   TTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 61

Query: 121 ATSGGMA 127
           ATSGGMA
Sbjct: 62  ATSGGMA 68

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547690|ref|XP_002514902.1| stress associated endoplasmic reticulum protein, putative [Ricinus communis] gi|223545953|gb|EEF47456.1| stress associated endoplasmic reticulum protein, putative [Ricinus communis]

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 59/67 (88%), Positives = 64/67 (95%)

Query: 61  TTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRT 120
           TTS+RLA RKV++FEKNI KRG VPETTTKKGKDYPVGP+LLGFF+FVVIGSSLFQIIRT
Sbjct: 2   TTSRRLADRKVERFEKNITKRGTVPETTTKKGKDYPVGPLLLGFFIFVVIGSSLFQIIRT 61

Query: 121 ATSGGMA 127
           ATSGGMA
Sbjct: 62  ATSGGMA 68

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512383|ref|XP_003524899.1| PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Glycine max] gi|356525170|ref|XP_003531200.1| PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Glycine max] gi|255633110|gb|ACU16910.1| unknown [Glycine max] gi|255647454|gb|ACU24191.1| unknown [Glycine max]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/67 (91%), Positives = 64/67 (95%)

Query: 61  TTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRT 120
           TTS+RLA RKV+KFEKNI KRG VP+TTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRT
Sbjct: 2   TTSRRLADRKVEKFEKNITKRGFVPDTTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRT 61

Query: 121 ATSGGMA 127
           ATSGGMA
Sbjct: 62  ATSGGMA 68

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425396|ref|XP_002277156.1| PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Vitis vinifera]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/67 (89%), Positives = 64/67 (95%)

Query: 61  TTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRT 120
           TTS+RLA RKV+KFEKNI KRG+VPETTTKKG DYPVGPVLLGFFVFVVIGSSLFQIIRT
Sbjct: 2   TTSRRLADRKVEKFEKNITKRGSVPETTTKKGSDYPVGPVLLGFFVFVVIGSSLFQIIRT 61

Query: 121 ATSGGMA 127
           ATSGG+A
Sbjct: 62  ATSGGVA 68

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468850|ref|XP_004152134.1| PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Cucumis sativus] gi|449484735|ref|XP_004156965.1| PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Cucumis sativus]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query: 61  TTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRT 120
           TTS+RLA RKV++FEKNI+KRGAVPET TKKGKDYPVGP+LLGFFVFVVIGSSLFQIIRT
Sbjct: 2   TTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 61

Query: 121 ATSGGMA 127
           AT GGM 
Sbjct: 62  ATGGGMG 68

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
TAIR|locus:2015969	68	AT1G27330 "AT1G27330" [Arabido	0.527	0.985	0.701	2.2e-18
TAIR|locus:2015984	68	AT1G27350 "AT1G27350" [Arabido	0.527	0.985	0.701	2.2e-18

TAIR|locus:2015969 AT1G27330 "AT1G27330" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 47/67 (70%), Positives = 51/67 (76%)

Query:    61 TTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYXXXXXXXXXXXXXXIGSSLFQIIRT 120
             TTSKRLA RK++KF+KNI+KRG VPETTTKKGKDY              IGSSLFQIIRT
Sbjct:     2 TTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 61

Query:   121 ATSGGMA 127
             ATSGGMA
Sbjct:    62 ATSGGMA 68

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2015984 AT1G27350 "AT1G27350" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 47/67 (70%), Positives = 51/67 (76%)

Query:    61 TTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYXXXXXXXXXXXXXXIGSSLFQIIRT 120
             TTSKRLA RK++KF+KNI+KRG VPETTTKKGKDY              IGSSLFQIIRT
Sbjct:     2 TTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 61

Query:   121 ATSGGMA 127
             ATSGGMA
Sbjct:    62 ATSGGMA 68


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      127        94   0.00091  102 3  10 22  0.43    29
                                                     29  0.42    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  531 (57 KB)
  Total size of DFA:  108 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.96u 0.19s 10.15t   Elapsed:  00:00:01
  Total cpu time:  9.96u 0.19s 10.15t   Elapsed:  00:00:01
  Start:  Fri May 10 14:34:59 2013   End:  Fri May 10 14:35:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	127
pfam06624	63	pfam06624, RAMP4, Ribosome associated membrane pro	3e-20

>gnl|CDD|219110 pfam06624, RAMP4, Ribosome associated membrane protein RAMP4

 Score = 77.3 bits (191), Expect = 3e-20
 Identities = 32/61 (52%), Positives = 42/61 (68%)

Query: 63  SKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTAT 122
           SK+      +KF KNI KRG VP++  KK + YPVGP LLG F+FVV GS++FQII++  
Sbjct: 3   SKQRMKVANEKFSKNITKRGNVPKSLKKKEEKYPVGPWLLGLFIFVVCGSAIFQIIQSIR 62

Query: 123 S 123
            
Sbjct: 63  M 63

This family consists of several ribosome associated membrane protein RAMP4 (or SERP1) sequences. Stabilisation of membrane proteins in response to stress involves the concerted action of a rescue unit in the ER membrane comprised of SERP1/RAMP4, other components of the translocon, and molecular chaperones in the ER. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
KOG3491	65	consensus Predicted membrane protein [Function unk	99.96
PF06624	63	RAMP4: Ribosome associated membrane protein RAMP4;	99.96
PF06724	73	DUF1206: Domain of Unknown Function (DUF1206); Int	80.11

>KOG3491 consensus Predicted membrane protein [Function unknown]

Probab=99.96  E-value=3.2e-30  Score=175.86  Aligned_cols=65  Identities=68%  Similarity=1.003  Sum_probs=60.3

Q ss_pred             CCHHHHHHhhhhHHHHHhhhccCCCCCccccCCCCCCccHHHHHHHHHHHhhhHHHHHHHHhhcCC
Q 033110           60 QTTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTATSGG  125 (127)
Q Consensus        60 qTp~qR~AN~Ks~kFaKNi~KRGkv~ks~kkk~~K~PVgP~wLgLfiFVVcGsaIFEIIr~i~~g~  125 (127)
                      ||++||+ +.++|||+|||++||+|+++.+++++|||||||+||||+||||||++|||||+++.|+
T Consensus         1 m~~Kqr~-~~anekfsKNi~~RGnVakt~~~~e~kypvgPwLlglFvFVVcGSa~FqIIr~~~mG~   65 (65)
T KOG3491|consen    1 MTSKQRA-DRANEKFSKNILKRGNVAKTTTKKEKKYPVGPWLLGLFVFVVCGSALFQIIRTATMGG   65 (65)
T ss_pred             CchHHHH-HHHHHHHhHHHHhcCCccccccCccccCCcchHHHHHHHHHhhcHHHHHHHHHHhccC
Confidence            6888885 5667779999999999999999999999999999999999999999999999999885

>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum

Probab=99.96  E-value=6.4e-30  Score=172.85  Aligned_cols=61  Identities=57%  Similarity=0.908  Sum_probs=55.5

Q ss_pred             hCCHHHHHHhhhhHHHHHhhhccCCCCCccccCCCCCCccHHHHHHHHHHHhhhHHHHHHHHhh
Q 033110           59 AQTTSKRLAVRKVDKFEKNIMKRGAVPETTTKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTAT  122 (127)
Q Consensus        59 aqTp~qR~AN~Ks~kFaKNi~KRGkv~ks~kkk~~K~PVgP~wLgLfiFVVcGsaIFEIIr~i~  122 (127)
                      ++++++|+||+|   |+||+++||||+++.+++++||||||||||+|+||||||++|||||+++
T Consensus         2 a~~~~~r~an~k---f~kni~krG~v~~~~k~k~~k~pVgp~~L~l~iFVV~Gs~ifqiir~i~   62 (63)
T PF06624_consen    2 ASKRRMRRANEK---FSKNITKRGKVPKSLKKKEKKYPVGPWLLGLFIFVVCGSAIFQIIRSIQ   62 (63)
T ss_pred             CccHHHHHHHHH---HHhhHHhcCCCccccccccccCCcCHHHHhhhheeeEcHHHHHHHHHHh
Confidence            356677777776   9999999999999988888999999999999999999999999999986

It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].

>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins

Probab=80.11  E-value=3.4  Score=27.27  Aligned_cols=31  Identities=26%  Similarity=0.462  Sum_probs=27.9

Q ss_pred             CCCCccHHHHHHHHHHHhhhHHHHHHHHhhc
Q 033110           93 KDYPVGPVLLGFFVFVVIGSSLFQIIRTATS  123 (127)
Q Consensus        93 ~K~PVgP~wLgLfiFVVcGsaIFEIIr~i~~  123 (127)
                      ...|.|+|++++....++|-+++++.+.+..
T Consensus        41 ~~~p~G~~ll~~vg~gli~~gi~~~~~a~~~   71 (73)
T PF06724_consen   41 LEQPFGRWLLGAVGLGLIGYGIWQFVKAVYR   71 (73)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999987654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00