Citrus Sinensis ID: 033136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK
Secondary Structure (PSIPRED)
ccccccccccccEEEccccccccccccccEEEEEcccccccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEccEEEccccEEEEEccccccEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHccccEEcccccccccccccccEEEEccccccccccEEEEEcccccccccccccccccccccccccccccccccccccEEEEcccccccEccEEEEEEEccEEEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
mascnmasaasgfsltpnvatnvnsgsksnmlffppknnssnsfRLVVRaseeaaappaaattaapaegeaapkpkpppigpkrgaKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK
Flexible Loop (DISEMBL)
MASCNMASaasgfsltpnVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPAAAttaapaegeaapkpkpppigpkrgAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK
Low Complexity Region (SEG)
MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASeeaaappaaattaapaegeaapkpkpppigpkrgakVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK
Disordered region (IsUnstruct)
***************************************************************************************VKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNH**
Disordered Region (DISOPRED)
*********ASGFSLTPN*********************************************************************VKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFN***
Disordered Region (DISEMBL)
**********SGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRAS************************KPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK
Disordered Region (DISPRO)
*******************AT*****SKSNMLFF****NSSNSFR*****S***********************PKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHF*
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q41228	141	Photosystem I reaction ce	N/A	no	0.841	0.751	0.645	4e-23
P13194	147	Photosystem I reaction ce	N/A	no	0.793	0.680	0.495	1e-17
Q9S714	145	Photosystem I reaction ce	yes	no	0.801	0.696	0.517	2e-13
Q41229	143	Photosystem I reaction ce	N/A	no	0.753	0.664	0.584	3e-13
P12354	125	Photosystem I reaction ce	N/A	no	0.238	0.24	0.8	3e-09
P12352	97	Photosystem I reaction ce	N/A	no	0.365	0.474	0.476	1e-07
Q9S831	143	Photosystem I reaction ce	no	no	0.809	0.713	0.481	2e-07
P0A423	76	Photosystem I reaction ce	yes	no	0.214	0.355	0.703	5e-05
P0A424	76	Photosystem I reaction ce	N/A	no	0.214	0.355	0.703	5e-05
Q1XDG0	62	Photosystem I reaction ce	N/A	no	0.214	0.435	0.666	5e-05

>sp|Q41228|PSAEA_NICSY Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1

 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 80/110 (72%), Gaps = 4/110 (3%)

Query: 1   MASCNMASAASGFSL-TPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPA 59
           MASCNMASAAS F + TPNVA+N N+ S++ MLFF  KN  S + RLVVRA+EEAA P A
Sbjct: 1   MASCNMASAASNFLVATPNVASNTNT-SRTTMLFFSSKNYGSTAPRLVVRAAEEAAPPAA 59

Query: 60  AATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
           AAT         A KP  PPIGPKRG KV+ILR+ESYWY G GSVVA DQ
Sbjct: 60  AATAEPAEAPVKAAKP--PPIGPKRGTKVRILRKESYWYKGTGSVVACDQ 107

Stabilizes the interaction between psaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.
Nicotiana sylvestris (taxid: 4096)

>sp|P13194|PSAE_HORVU Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare GN=PSAE PE=1 SV=2

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 66/121 (54%), Gaps = 21/121 (17%)

Query: 1   MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAA---- 56
           MAS NMASA S F L   + +  N G  S + F P   ++    +LV RA E  AA    
Sbjct: 1   MASTNMASATSRFMLAAGIPSGANGGVSSRVSFLP---SNRLGLKLVARAEEPTAAAPAE 57

Query: 57  --------PPAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVD 108
                   P AA  T  PA      K KPPP GPKRG KVKILRRESYWYNG GSVV VD
Sbjct: 58  PAPAADEKPEAAVATKEPA------KAKPPPRGPKRGTKVKILRRESYWYNGTGSVVTVD 111

Query: 109 Q 109
           Q
Sbjct: 112 Q 112

Stabilizes the interaction between psaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.

Hordeum vulgare (taxid: 4513)

>sp|Q9S714|PSAE2_ARATH Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/112 (51%), Positives = 72/112 (64%), Gaps = 11/112 (9%)

Query: 6   MASAASGFSLTPNVATNVNSGS-KSNML--FFPPKNNSSNSFRLVVRASEEA-----AAP 57
           M SAA+GF LT NV   +  GS KS  +  F P ++  S   RLVVRA+E+      ++ 
Sbjct: 3   MTSAATGFILTANVPAAIGGGSSKSTTIVSFLPMRSFGS---RLVVRAAEDTPPATASSD 59

Query: 58  PAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
            ++ T AA      A K KPPPIGPKRG+KVKILR+ESYWY  +GSVVAVDQ
Sbjct: 60  SSSTTAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQ 111

Stabilizes the interaction between psaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41229|PSAEB_NICSY Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 74/101 (73%), Gaps = 6/101 (5%)

Query: 12  GFSL-TPNVATNVNSGSKSNMLFFPP-KNNSSNSF-RLVVRASEEAAAPPAAATTAAPAE 68
           GF + TPN+AT+ N+  +++MLFF   KNN++ +F RLVVRA+EEAA P A AT    A 
Sbjct: 12  GFMVATPNIATS-NTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAAPPAATATAEGEAP 70

Query: 69  GEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
              A KP P  IGPKRG KV++LR+ESYWY G+GSVVAVDQ
Sbjct: 71  PAKAAKPPP--IGPKRGTKVRVLRKESYWYKGVGSVVAVDQ 109

Stabilizes the interaction between psaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.

Nicotiana sylvestris (taxid: 4096)

>sp|P12354|PSAE_SPIOL Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/30 (80%), Positives = 29/30 (96%)

Query: 80  IGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
           IGPKRG+KV+I+R+ESYWY G+GSVVAVDQ
Sbjct: 62  IGPKRGSKVRIMRKESYWYKGVGSVVAVDQ 91

Stabilizes the interaction between psaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.

Spinacia oleracea (taxid: 3562)

>sp|P12352|PSAE_CHLRE Photosystem I reaction center subunit IV, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAE PE=1 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 36/65 (55%), Gaps = 19/65 (29%)

Query: 45  RLVVRASEEAAAPPAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSV 104
           RLVVRA E  AAP                      +GPKRG+ VKILR ESYW+N +G V
Sbjct: 19  RLVVRAEEVKAAPK-------------------KEVGPKRGSLVKILRPESYWFNQVGKV 59

Query: 105 VAVDQ 109
           V+VDQ
Sbjct: 60  VSVDQ 64

Stabilizes the interaction between psaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q9S831|PSAE1_ARATH Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 71/108 (65%), Gaps = 6/108 (5%)

Query: 6   MASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEE----AAAPPAAA 61
           M +A++ F L  NV +   + S  + + F P  N+ +  RLVVRA+E+    +++   + 
Sbjct: 3   MTTASTVFVLPANVTSVAGASSSRSSVSFLPMRNAGS--RLVVRAAEDPAPASSSSKDSP 60

Query: 62  TTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
             AA  +G  A KPKPPPIGPKRG+KVKILRRESYW+  +GSVVAVDQ
Sbjct: 61  AAAAAPDGATATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQ 108

Stabilizes the interaction between psaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.

Arabidopsis thaliana (taxid: 3702)

>sp|P0A423|PSAE_THEEB Photosystem I reaction center subunit IV OS=Thermosynechococcus elongatus (strain BP-1) GN=psaE PE=1 SV=2

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/27 (70%), Positives = 24/27 (88%)

Query: 83  KRGAKVKILRRESYWYNGIGSVVAVDQ 109
           +RG+KVKILR ESYWYN +G+V +VDQ
Sbjct: 3   QRGSKVKILRPESYWYNEVGTVASVDQ 29

Stabilizes the interaction between psaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|P0A424|PSAE_SYNEL Photosystem I reaction center subunit IV OS=Synechococcus elongatus GN=psaE PE=1 SV=2

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/27 (70%), Positives = 24/27 (88%)

Query: 83  KRGAKVKILRRESYWYNGIGSVVAVDQ 109
           +RG+KVKILR ESYWYN +G+V +VDQ
Sbjct: 3   QRGSKVKILRPESYWYNEVGTVASVDQ 29

Stabilizes the interaction between psaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.

Synechococcus elongatus naegeli (taxid: 1141)

>sp|Q1XDG0|PSAE_PORYE Photosystem I reaction center subunit IV OS=Porphyra yezoensis GN=psaE PE=3 SV=1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 24/27 (88%)

Query: 83  KRGAKVKILRRESYWYNGIGSVVAVDQ 109
           +RG+KVKILR+ESYWY  IG+V A+D+
Sbjct: 2   ERGSKVKILRKESYWYQEIGTVAAIDK 28

Stabilizes the interaction between psaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.

Porphyra yezoensis (taxid: 2788)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
157678948	143	PS1 reaction center subunit III [Citrus	0.976	0.860	0.919	9e-55
157678952	143	PSI reaction center subunit III [Citrus	0.976	0.860	0.911	2e-54
217071650	138	unknown [Medicago truncatula] gi|3885166	0.793	0.724	0.663	1e-30
357510347	138	Photosystem I reaction center subunit IV	0.793	0.724	0.663	2e-30
224065507	140	hypothetical protein POPTRDRAFT_711610 [	0.841	0.757	0.743	3e-28
26986114	140	putative photosystem I reaction centre s	0.841	0.757	0.743	1e-27
2499966	141	RecName: Full=Photosystem I reaction cen	0.841	0.751	0.645	3e-21
288563761	145	photosystem I psaE [Morus alba var. mult	0.817	0.710	0.601	1e-19
226503797	139	photosystem I reaction center subunit IV	0.809	0.733	0.589	1e-19
195609748	139	photosystem I reaction center subunit IV	0.809	0.733	0.589	4e-19

>gi|157678948|dbj|BAF80472.1| PS1 reaction center subunit III [Citrus sinensis] gi|157678956|dbj|BAF80476.1| PSI reaction center subunit III [Citrus sinensis] gi|157678960|dbj|BAF80478.1| PSI reaction center subunit III [Citrus sinensis]

 Score =  217 bits (553), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 114/124 (91%), Positives = 115/124 (92%), Gaps = 1/124 (0%)

Query: 1   MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPAA 60
           MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPAA
Sbjct: 1   MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPAA 60

Query: 61  ATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYV 120
           ATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ    S + V V
Sbjct: 61  ATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ-DPKSRYPVVV 119

Query: 121 TFNH 124
            FN 
Sbjct: 120 RFNK 123

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157678952|dbj|BAF80474.1| PSI reaction center subunit III [Citrus sinensis]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 113/124 (91%), Positives = 115/124 (92%), Gaps = 1/124 (0%)

Query: 1   MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPAA 60
           MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASE+AAAPPAA
Sbjct: 1   MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEDAAAPPAA 60

Query: 61  ATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYV 120
           ATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ    S + V V
Sbjct: 61  ATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ-DPKSRYPVVV 119

Query: 121 TFNH 124
            FN 
Sbjct: 120 RFNK 123

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071650|gb|ACJ84185.1| unknown [Medicago truncatula] gi|388516619|gb|AFK46371.1| unknown [Medicago truncatula]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/113 (66%), Positives = 87/113 (76%), Gaps = 13/113 (11%)

Query: 1   MASCNMASAASGFSLTPN-VATNVNSG---SKSNMLFFPPKNNSSNSFRLVVRASEEAAA 56
           MASCNMASAASGF L+PN V+ N N+    S+ NM+ +P   N+++  RLVVRASEEAAA
Sbjct: 1   MASCNMASAASGFVLSPNNVSCNTNTNLLVSRMNMVMYPTTRNTNS--RLVVRASEEAAA 58

Query: 57  PPAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
            P         EGEAAPK KPPPIGPKRGAKVK+LR+ESYW+NGIGSVVAVDQ
Sbjct: 59  TPTV-------EGEAAPKTKPPPIGPKRGAKVKVLRKESYWFNGIGSVVAVDQ 104

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510347|ref|XP_003625462.1| Photosystem I reaction center subunit IV A [Medicago truncatula] gi|355500477|gb|AES81680.1| Photosystem I reaction center subunit IV A [Medicago truncatula] gi|388502410|gb|AFK39271.1| unknown [Medicago truncatula]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/113 (66%), Positives = 87/113 (76%), Gaps = 13/113 (11%)

Query: 1   MASCNMASAASGFSLTPN-VATNVNSG---SKSNMLFFPPKNNSSNSFRLVVRASEEAAA 56
           MASCNMASAASGF L+PN V+ N N+    S+ NM+ +P   N+++  RLVVRASEEAAA
Sbjct: 1   MASCNMASAASGFVLSPNNVSGNTNTNLLVSRMNMVMYPTTRNTNS--RLVVRASEEAAA 58

Query: 57  PPAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
            P         EGEAAPK KPPPIGPKRGAKVK+LR+ESYW+NGIGSVVAVDQ
Sbjct: 59  TPTV-------EGEAAPKTKPPPIGPKRGAKVKVLRKESYWFNGIGSVVAVDQ 104

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065507|ref|XP_002301832.1| hypothetical protein POPTRDRAFT_711610 [Populus trichocarpa] gi|222843558|gb|EEE81105.1| hypothetical protein POPTRDRAFT_711610 [Populus trichocarpa]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 89/109 (81%), Gaps = 3/109 (2%)

Query: 1   MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPAA 60
           MASCNMASAASGF+L P VATN NS SK  MLFF  KNN+ N  RLVVR++EE A+PPAA
Sbjct: 1   MASCNMASAASGFALAPTVATNTNSTSKPTMLFFSSKNNNKNYSRLVVRSAEEGASPPAA 60

Query: 61  ATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
            T  A AE   APKPKPPPIGPKRG KVKILR+ESYW+NG+GSVVAVDQ
Sbjct: 61  TTEPAVAE---APKPKPPPIGPKRGTKVKILRKESYWFNGVGSVVAVDQ 106

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26986114|emb|CAD29821.2| putative photosystem I reaction centre subunit IV [Populus x canadensis]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 88/109 (80%), Gaps = 3/109 (2%)

Query: 1   MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPAA 60
           MASCNMASAASGF+LTP VATN NS SK  MLFF  KNN+ N  RLVVR++EE A+PPAA
Sbjct: 1   MASCNMASAASGFALTPAVATNTNSTSKPTMLFFSSKNNNKNYSRLVVRSAEEGASPPAA 60

Query: 61  ATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
            T  A AE   APKPKPPPIGPKRG KVKILR+ESYW+NG GSV AVDQ
Sbjct: 61  TTEPAVAE---APKPKPPPIGPKRGTKVKILRKESYWFNGFGSVAAVDQ 106

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2499966|sp|Q41228.1|PSAEA_NICSY RecName: Full=Photosystem I reaction center subunit IV A, chloroplastic; Short=PSI-E A; Contains: RecName: Full=Photosystem I reaction center subunit IV A isoform 2; Flags: Precursor gi|632722|gb|AAB31704.1| photosystem I subunit PSI-E [Nicotiana sylvestris]

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 80/110 (72%), Gaps = 4/110 (3%)

Query: 1   MASCNMASAASGFSL-TPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPA 59
           MASCNMASAAS F + TPNVA+N N+ S++ MLFF  KN  S + RLVVRA+EEAA P A
Sbjct: 1   MASCNMASAASNFLVATPNVASNTNT-SRTTMLFFSSKNYGSTAPRLVVRAAEEAAPPAA 59

Query: 60  AATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
           AAT         A KP  PPIGPKRG KV+ILR+ESYWY G GSVVA DQ
Sbjct: 60  AATAEPAEAPVKAAKP--PPIGPKRGTKVRILRKESYWYKGTGSVVACDQ 107

Source: Nicotiana sylvestris

Species: Nicotiana sylvestris

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|288563761|gb|ADC53693.1| photosystem I psaE [Morus alba var. multicaulis]

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 80/113 (70%), Gaps = 10/113 (8%)

Query: 4   CNMASAASGFSLTPNVATNVNSG--SKSNMLFFPPKNN-----SSNSFRLVVRASEEAAA 56
            +MASAASGF LTP+VAT   +   S++++ FF  K+N     SS+  RLVVRA+EE AA
Sbjct: 2   ASMASAASGFVLTPSVATTTGAAVSSRNSVSFFHLKSNGNNGRSSSVSRLVVRAAEEGAA 61

Query: 57  PPAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
               A T    EGEA PKPKP PIGPKRG KV+ILRRESYWY  +GSVVAVDQ
Sbjct: 62  --PPAATKPAPEGEA-PKPKPEPIGPKRGTKVRILRRESYWYKDVGSVVAVDQ 111

Source: Morus alba var. multicaulis

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226503797|ref|NP_001149700.1| photosystem I reaction center subunit IV A [Zea mays] gi|195629594|gb|ACG36438.1| photosystem I reaction center subunit IV A [Zea mays] gi|414589163|tpg|DAA39734.1| TPA: photosystem I reaction center subunit IV A [Zea mays]

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 70/112 (62%), Gaps = 10/112 (8%)

Query: 1   MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPAA 60
           MAS NMASA S F L   V T   + S S  + F    N     RLVVRA EE+ A PA 
Sbjct: 1   MASTNMASATSRFMLAAGVPT---ASSGSGRVSFASAPNRLGR-RLVVRADEESPAEPAP 56

Query: 61  ATTAAPAEGEAAPKPK---PPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
               A  EG  A KPK   PPPIGPKRGAKVKILRRESYWYNGIG+VV VDQ
Sbjct: 57  T---AEGEGAVATKPKAEKPPPIGPKRGAKVKILRRESYWYNGIGNVVTVDQ 105

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195609748|gb|ACG26704.1| photosystem I reaction center subunit IV A [Zea mays]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 69/112 (61%), Gaps = 10/112 (8%)

Query: 1   MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPAA 60
           MAS NMASA S F L   V T   + S S  + F    N     RLVVRA EE  A PA 
Sbjct: 1   MASTNMASATSRFMLAAGVPT---ASSGSGRVSFASAPNRLGR-RLVVRADEEFPAEPAP 56

Query: 61  ATTAAPAEGEAAPKPK---PPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
               A  EG  A KPK   PPPIGPKRGAKVKILRRESYWYNGIG+VV VDQ
Sbjct: 57  T---AEGEGAVATKPKAEKPPPIGPKRGAKVKILRRESYWYNGIGNVVTVDQ 105

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2117818	143	PSAE-1 "PSA E1 KNOCKOUT" [Arab	0.174	0.153	0.818	1.6e-10
TAIR|locus:2038942	145	PSAE-2 "photosystem I subunit	0.801	0.696	0.366	3.6e-09

TAIR|locus:2117818 PSAE-1 "PSA E1 KNOCKOUT" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
 Identities = 18/22 (81%), Positives = 20/22 (90%)

Query:    88 VKILRRESYWYNGIGSVVAVDQ 109
             VKILRRESYW+  +GSVVAVDQ
Sbjct:    87 VKILRRESYWFKNVGSVVAVDQ 108

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009522 "photosystem I" evidence=IEA

GO:0009538 "photosystem I reaction center" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2038942 PSAE-2 "photosystem I subunit E-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 41/112 (36%), Positives = 49/112 (43%)

Query:     6 MASAASGFSLTPNVATNVNSGS-KSNML--FFPPKNNSSNSFRLVVRASXXXXXXXXXXX 62
             M SAA+GF LT NV   +  GS KS  +  F P ++  S   RLVVRA+           
Sbjct:     3 MTSAATGFILTANVPAAIGGGSSKSTTIVSFLPMRSFGS---RLVVRAAEDTPPATASSD 59

Query:    63 XXXXXXXXXXXXXXXXXXXX-----XXXXXVKILRRESYWYNGIGSVVAVDQ 109
                                           VKILR+ESYWY  +GSVVAVDQ
Sbjct:    60 SSSTTAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQ 111


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.131   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126        90   0.00091  102 3  11 22  0.42    29
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  511 (54 KB)
  Total size of DFA:  98 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.23u 0.15s 8.38t   Elapsed:  00:00:01
  Total cpu time:  8.23u 0.15s 8.38t   Elapsed:  00:00:01
  Start:  Fri May 10 15:31:14 2013   End:  Fri May 10 15:31:15 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009522 "photosystem I" evidence=IEA

GO:0009538 "photosystem I reaction center" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S714	PSAE2_ARATH	No assigned EC number	0.5178	0.8015	0.6965	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
PLN00045	101	PLN00045, PLN00045, photosystem I reaction center	2e-20
pfam02427	61	pfam02427, PSI_PsaE, Photosystem I reaction centre	6e-13
CHL00125	64	CHL00125, psaE, photosystem I subunit IV; Reviewed	5e-11
PRK02749	71	PRK02749, PRK02749, photosystem I reaction center	2e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.004

>gnl|CDD|177677 PLN00045, PLN00045, photosystem I reaction center subunit IV; Provisional

 Score = 79.3 bits (195), Expect = 2e-20
 Identities = 39/66 (59%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 45  RLVVRASEEAAAPPAAATTAAPAEGEA-APKPKPPPIGPKRGAKVKILRRESYWYNGIGS 103
                 +E A +  AA+  AA A   A A KPKPPPIGPKRG+KVKILR ESYW+N +G 
Sbjct: 2   VRAAEDAEPATSSSAASPAAAAAPAAAPAAKPKPPPIGPKRGSKVKILRPESYWFNDVGK 61

Query: 104 VVAVDQ 109
           VVAVDQ
Sbjct: 62  VVAVDQ 67

Length = 101

>gnl|CDD|145527 pfam02427, PSI_PsaE, Photosystem I reaction centre subunit IV / PsaE

 Score = 58.5 bits (142), Expect = 6e-13
 Identities = 18/28 (64%), Positives = 25/28 (89%)

Query: 82  PKRGAKVKILRRESYWYNGIGSVVAVDQ 109
            KRG+KV+ILR+ESYWYN +G+V +VD+
Sbjct: 1   IKRGSKVRILRKESYWYNEVGTVASVDK 28

PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains. Length = 61

>gnl|CDD|177048 CHL00125, psaE, photosystem I subunit IV; Reviewed

 Score = 54.0 bits (130), Expect = 5e-11
 Identities = 20/27 (74%), Positives = 24/27 (88%)

Query: 83  KRGAKVKILRRESYWYNGIGSVVAVDQ 109
           KRG+KV+ILR+ESYWYN IG+V  VDQ
Sbjct: 3   KRGSKVRILRKESYWYNEIGTVATVDQ 29

Length = 64

>gnl|CDD|179468 PRK02749, PRK02749, photosystem I reaction center subunit IV; Provisional

 Score = 50.1 bits (120), Expect = 2e-09
 Identities = 17/27 (62%), Positives = 22/27 (81%)

Query: 83  KRGAKVKILRRESYWYNGIGSVVAVDQ 109
            RG KV+ILR ESYWYN +G+V +VD+
Sbjct: 4   SRGDKVRILRPESYWYNEVGTVASVDK 30

Length = 71

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 50  ASEEAAAPPAAATTAAPAEGEAAPKPK---PPPIGPKRGAKVKILR 92
           A+   AAPP  A  AA A   AAP        P       +V  LR
Sbjct: 76  AAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLR 121

Length = 1228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
PLN00045	101	photosystem I reaction center subunit IV; Provisio	100.0
CHL00125	64	psaE photosystem I subunit IV; Reviewed	99.96
PRK02749	71	photosystem I reaction center subunit IV; Provisio	99.96
PF02427	61	PSI_PsaE: Photosystem I reaction centre subunit IV	99.96
smart00739	28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	86.18
COG3758	193	Uncharacterized protein conserved in bacteria [Fun	81.56

>PLN00045 photosystem I reaction center subunit IV; Provisional

Probab=100.00  E-value=1.4e-36  Score=222.07  Aligned_cols=54  Identities=63%  Similarity=1.034  Sum_probs=51.7

Q ss_pred             CCCCCCCCCCCCCCCeeEEeeccceeccccceEEEEccCCceeeeeEEEEeeecC
Q 033136           72 APKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK  126 (126)
Q Consensus        72 a~k~kpppigp~RGskVrIlR~ESYWyn~vGtVvsVDq~~~~~rYPVvVRF~kv~  126 (126)
                      ++++|||||||+|||||||||+||||||++|+|++|||+.+ +||||+|||||||
T Consensus        30 ~~~~kpp~ig~~RGskVrIlR~ESYWyn~vGtVvsVDq~~g-irYPVvVRF~kvN   83 (101)
T PLN00045         30 AAKPKPPPIGPKRGSKVKILRPESYWFNDVGKVVAVDQDPG-VRYPVVVRFEKVN   83 (101)
T ss_pred             cccCCCCCcccCCCCEEEEccccceeecCcceEEEEeCCCC-cccceEEEeeeee
Confidence            78999999999999999999999999999999999999955 7999999999997

>CHL00125 psaE photosystem I subunit IV; Reviewed

Probab=99.96  E-value=1.6e-30  Score=177.95  Aligned_cols=44  Identities=52%  Similarity=0.857  Sum_probs=42.2

Q ss_pred             CCCCCCeeEEeeccceeccccceEEEEccCCceeeeeEEEEeeecC
Q 033136           81 GPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK  126 (126)
Q Consensus        81 gp~RGskVrIlR~ESYWyn~vGtVvsVDq~~~~~rYPVvVRF~kv~  126 (126)
                      +++||||||||||||||||++|||++|||+|  +||||+|||||||
T Consensus         1 mi~rGskVrIlR~ESYWyn~vGtV~svd~~g--i~YPV~VRF~kvN   44 (64)
T CHL00125          1 MVKRGSKVRILRKESYWYNEIGTVATVDQSG--IRYPVLVRFEKVN   44 (64)
T ss_pred             CcccCCEEEEccccceeecCcceEEEEcCCC--CCccEEEEEeeee
Confidence            5799999999999999999999999999997  5999999999997

>PRK02749 photosystem I reaction center subunit IV; Provisional

Probab=99.96  E-value=4.1e-30  Score=178.75  Aligned_cols=44  Identities=45%  Similarity=0.815  Sum_probs=42.3

Q ss_pred             CCCCCCeeEEeeccceeccccceEEEEccCCceeeeeEEEEeeecC
Q 033136           81 GPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK  126 (126)
Q Consensus        81 gp~RGskVrIlR~ESYWyn~vGtVvsVDq~~~~~rYPVvVRF~kv~  126 (126)
                      +++|||||||||||||||||+|||++|||+|  +||||+|||||||
T Consensus         2 ~i~rGskVrIlR~ESYWyn~vGtV~svD~sg--i~YPV~VRF~kvN   45 (71)
T PRK02749          2 AISRGDKVRILRPESYWYNEVGTVASVDKSG--IKYPVIVRFDKVN   45 (71)
T ss_pred             ccccCCEEEEccccceeecCcceEEEEccCC--CeeeEEEEeeeee
Confidence            5899999999999999999999999999998  5999999999997

>PF02427 PSI_PsaE: Photosystem I reaction centre subunit IV / PsaE; InterPro: IPR003375 PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane

Probab=99.96  E-value=2.4e-30  Score=175.73  Aligned_cols=43  Identities=51%  Similarity=0.896  Sum_probs=37.9

Q ss_pred             CCCCCeeEEeeccceeccccceEEEEccCCceeeeeEEEEeeecC
Q 033136           82 PKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK  126 (126)
Q Consensus        82 p~RGskVrIlR~ESYWyn~vGtVvsVDq~~~~~rYPVvVRF~kv~  126 (126)
                      ++||||||||||||||||++|+|++|||+|  +||||+|||||||
T Consensus         1 i~rgskVrIlR~ESYWyn~vGtV~svdqs~--i~YPV~VRF~kvN   43 (61)
T PF02427_consen    1 IKRGSKVRILRKESYWYNEVGTVASVDQSG--IRYPVVVRFDKVN   43 (61)
T ss_dssp             S-TTSEEEE-SSSSTTTTSEEEEEEETTSS--SSSSEEEE-SSS-
T ss_pred             CCCCCEEEEccccceeecccceEEEEccCC--ccccEEEEEEEec
Confidence            589999999999999999999999999999  5999999999996

The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains []. This subunit may form complexes with ferredoxin and ferredoxin-oxidoreductase in the photosystem I reaction centre.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 1PSF_A 1PSE_A 2WSF_E 2WSC_E 2O01_E 2WSE_E 1GXI_E 1JB0_E 3PCQ_E 1QP2_A ....

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif

Probab=86.18  E-value=1.5  Score=23.15  Aligned_cols=27  Identities=22%  Similarity=0.405  Sum_probs=22.4

Q ss_pred             CCCCCeeEEeeccceeccccceEEEEccC
Q 033136           82 PKRGAKVKILRRESYWYNGIGSVVAVDQV  110 (126)
Q Consensus        82 p~RGskVrIlR~ESYWyn~vGtVvsVDq~  110 (126)
                      ++.|++|+|+.-.  |-..+|.|..+|..
T Consensus         2 ~~~G~~V~I~~G~--~~g~~g~i~~i~~~   28 (28)
T smart00739        2 FEVGDTVRVIAGP--FKGKVGKVLEVDGE   28 (28)
T ss_pred             CCCCCEEEEeECC--CCCcEEEEEEEcCC
Confidence            5789999999855  77788999999863

Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.

>COG3758 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.56  E-value=1.1  Score=36.26  Aligned_cols=36  Identities=39%  Similarity=0.597  Sum_probs=28.8

Q ss_pred             CeeEEeeccce----eccccc---------------------eEEEEccCCceeeeeEEEE
Q 033136           86 AKVKILRRESY----WYNGIG---------------------SVVAVDQVRLFSIFLVYVT  121 (126)
Q Consensus        86 skVrIlR~ESY----Wyn~vG---------------------tVvsVDq~~~~~rYPVvVR  121 (126)
                      +++||||+|.|    |=|.=|                     ++++|.++|-|++||=+=|
T Consensus         2 t~m~il~~~dy~~mPWkNgGG~T~EIav~P~~a~~~dF~WRiS~AtVa~~G~FS~fpGidR   62 (193)
T COG3758           2 TMMRILRAEDYRRMPWKNGGGETNEIAVYPEGAAKRDFDWRISIATVAADGPFSLFPGIDR   62 (193)
T ss_pred             cceEeecccccccCCcccCCCceEEEEEcCCCccccccceEEEEEeeccCCCccccCCcce
Confidence            46889999988    887665                     5788999999999985544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
3lw5_E	64	Improved Model Of Plant Photosystem I Length = 64		2e-05
2wsc_E	143	Improved Model Of Plant Photosystem I Length = 143		2e-05
2o01_E	62	The Structure Of A Plant Photosystem I Supercomplex		5e-05
1jb0_E	75	Crystal Structure Of Photosystem I: A Photosyntheti		4e-04
1pse_A	69	The Three-Dimensional Solution Structure Of Psae Fr		6e-04

>pdb|3LW5|E Chain E, Improved Model Of Plant Photosystem I Length = 64

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/22 (86%), Positives = 20/22 (90%)
Query: 88  VKILRRESYWYNGIGSVVAVDQ 109
           VKILR+ESYWY G GSVVAVDQ
Sbjct: 9   VKILRKESYWYKGTGSVVAVDQ 30

>pdb|2WSC|E Chain E, Improved Model Of Plant Photosystem I Length = 143

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/22 (81%), Positives = 20/22 (90%)
Query: 88  VKILRRESYWYNGIGSVVAVDQ 109
           VKILRRESYW+  +GSVVAVDQ
Sbjct: 87  VKILRRESYWFKNVGSVVAVDQ 108

>pdb|2O01|E Chain E, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 62

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/22 (81%), Positives = 20/22 (90%)
Query: 88  VKILRRESYWYNGIGSVVAVDQ 109
           VKILRRESYW+  +GSVVAVDQ
Sbjct: 7   VKILRRESYWFKNVGSVVAVDQ 28

>pdb|1JB0|E Chain E, Crystal Structure Of Photosystem I: A Photosynthetic Reaction Center And Core Antenna System From Cyanobacteria Length = 75

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 88  VKILRRESYWYNGIGSVVAVDQ 109
           VKILR ESYWYN +G+V +VDQ
Sbjct: 7   VKILRPESYWYNEVGTVASVDQ 28

>pdb|1PSE|A Chain A, The Three-Dimensional Solution Structure Of Psae From The Cyanobacterium Synechococcus Sp. Strain Pcc 7002: A Photosystem I Protein That Shows Structural Homology With Sh3 Domains Length = 69

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 88  VKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFN 123
           VKILR+ESYWY  +G+V ++D+  +  I+ V V FN
Sbjct: 8   VKILRKESYWYGDVGTVASIDKSGI--IYPVIVRFN 41

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
2wsc_E	143	PSAE, PSI-E A, photosystem I reaction center subun	1e-22
1jb0_E	75	Photosystem 1 reaction centre subunit IV; membrane	8e-10
1qp2_A	70	Protein (PSAE protein); mainly beta, roll, pleckst	3e-09
1gxi_E	73	Photosystem I reaction center subunit IV; photosyn	3e-09

>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E* 2wsf_E* 2o01_E* 3lw5_E* Length = 143

 Score = 85.4 bits (210), Expect = 1e-22
 Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 8/109 (7%)

Query: 6   MASAASGFSLTPNVATNVN-SGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPAAATTA 64
           M +A++ F L  NV +    S S+S++ F P +N  S   RLVVRA+E+ A   +++  +
Sbjct: 3   MTTASTVFVLPANVTSVAGASSSRSSVSFLPMRNAGS---RLVVRAAEDPAPASSSSKDS 59

Query: 65  APA----EGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
             A    +G  A KPKPPPIGPKRG+KVKILRRESYW+  +GSVVAVDQ
Sbjct: 60  PAAAAAPDGATATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQ 108

>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E* Length = 75

 Score = 50.6 bits (120), Expect = 8e-10
 Identities = 19/27 (70%), Positives = 24/27 (88%)

Query: 83  KRGAKVKILRRESYWYNGIGSVVAVDQ 109
           +RG+KVKILR ESYWYN +G+V +VDQ
Sbjct: 2   QRGSKVKILRPESYWYNEVGTVASVDQ 28

>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A Length = 70

 Score = 49.0 bits (116), Expect = 3e-09
 Identities = 16/27 (59%), Positives = 23/27 (85%)

Query: 83  KRGAKVKILRRESYWYNGIGSVVAVDQ 109
           +RG+KV+ILR ESYW+  +G+V +VDQ
Sbjct: 3   QRGSKVRILRPESYWFQDVGTVASVDQ 29

>1gxi_E Photosystem I reaction center subunit IV; photosynthesis, PSAE SUB-UNIT, thylakoid; NMR {Synechocystis SP} SCOP: b.34.4.2 PDB: 1pse_A 1psf_A Length = 73

 Score = 49.1 bits (116), Expect = 3e-09
 Identities = 14/27 (51%), Positives = 20/27 (74%)

Query: 83  KRGAKVKILRRESYWYNGIGSVVAVDQ 109
            RG KV+I R ESYWY  +G+V +V++
Sbjct: 3   NRGDKVRIKRTESYWYGDVGTVASVEK 29

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
2wsc_E	143	PSAE, PSI-E A, photosystem I reaction center subun	100.0
1jb0_E	75	Photosystem 1 reaction centre subunit IV; membrane	99.95
1gxi_E	73	Photosystem I reaction center subunit IV; photosyn	99.95
1qp2_A	70	Protein (PSAE protein); mainly beta, roll, pleckst	99.93
3sd4_A	69	PHD finger protein 20; tudor domain, transcription	93.14
2eqm_A	88	PHD finger protein 20-like 1; structural genomics,	86.83
2m0o_A	79	PHD finger protein 1; tudor domain, H3K36ME3 bindi	84.97

>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E* 2wsf_E* 2o01_E* 3lw5_E*

Probab=100.00  E-value=1.1e-57  Score=346.94  Aligned_cols=118  Identities=49%  Similarity=0.786  Sum_probs=44.0

Q ss_pred             cccccccccceeccccccccCC-CCcceEEEecCCCCCCCceeEEEEeccccCCCC-C----ccccCCCCCCCCCCCCCC
Q 033136            4 CNMASAASGFSLTPNVATNVNS-GSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPP-A----AATTAAPAEGEAAPKPKP   77 (126)
Q Consensus         4 ~~MaSAasgF~l~~nv~~~~~~-~s~~~~~f~~~k~~~~~~~rlvvRA~e~~aa~~-~----~a~~aap~~~~~a~k~kp   77 (126)
                      ||||||+|||+|++|+++++++ +++++|+|||+++++   +||||||+|++++++ +    +++++++++++ ++|+||
T Consensus         1 ~~masaas~f~l~~~v~~~~~~~~~~~~~~f~~~~~~~---~rlvvra~e~~a~~~p~~~~~~~~~~~~~~~~-~~~~kp   76 (143)
T 2wsc_E            1 MAMTTASTVFVLPANVTSVAGASSSRSSVSFLPMRNAG---SRLVVRAAEDPAPASSSSKDSPAAAAAPDGAT-ATKPKP   76 (143)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccccccceeecccccccccCCCCcceEEEecccCCC---ceEEEEcccCCCCCCccccccccccccccccc-cccCCC
Confidence            7999999999999999997655 789999999999988   999999999988763 2    33566666666 679999


Q ss_pred             CCCCCCCCCeeEEeeccceeccccceEEEEccCCceeeeeEEEEeeecC
Q 033136           78 PPIGPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK  126 (126)
Q Consensus        78 ppigp~RGskVrIlR~ESYWyn~vGtVvsVDq~~~~~rYPVvVRF~kv~  126 (126)
                      |||||+||+||||||||||||||||+|++|||+.+ |||||+|||||||
T Consensus        77 p~igp~RGskVrIlR~ESYWyn~vGtVvsVDqs~g-irYPVvVRF~KVN  124 (143)
T 2wsc_E           77 PPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPK-TRYPVVVRFAKVN  124 (143)
T ss_dssp             --CCSCSSSCBCCCSSSSTTTTSCBBCCCCCCSSC-CSCCCBCBCSCCC
T ss_pred             CCCCCCCCCEeEEccccceeecCcceEEEEecCCC-ccccEEEEeeeec
Confidence            99999999999999999999999999999999844 6999999999997

>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*

Probab=99.95  E-value=1.1e-29  Score=177.07  Aligned_cols=44  Identities=50%  Similarity=0.832  Sum_probs=41.2

Q ss_pred             CCCCCeeEEeeccceeccccceEEEEccCCceeeeeEEEEeeecC
Q 033136           82 PKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK  126 (126)
Q Consensus        82 p~RGskVrIlR~ESYWyn~vGtVvsVDq~~~~~rYPVvVRF~kv~  126 (126)
                      ++|||||||||||||||||+|||++|||+.+ |||||+|||||||
T Consensus         1 i~RGskVrIlR~ESYWyn~vGtVasVD~s~g-i~YPV~VRFdkVN   44 (75)
T 1jb0_E            1 VQRGSKVKILRPESYWYNEVGTVASVDQTPG-VKYPVIVRFDKVN   44 (75)
T ss_dssp             CCTTCEEEECCTTCTTBTCEEEEEEECCCTT-CSCCEEEECSSCC
T ss_pred             CCCCCEEEEccccceeecCcceEEEEecCCC-ccccEEEEEeeec
Confidence            5899999999999999999999999999833 6999999999997

>1gxi_E Photosystem I reaction center subunit IV; photosynthesis, PSAE SUB-UNIT, thylakoid; NMR {Synechocystis SP} SCOP: b.34.4.2 PDB: 1pse_A 1psf_A

Probab=99.95  E-value=6.8e-30  Score=177.40  Aligned_cols=43  Identities=40%  Similarity=0.799  Sum_probs=41.4

Q ss_pred             CCCCCeeEEeeccceeccccceEEEEccCCceeeeeEEEEeeecC
Q 033136           82 PKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK  126 (126)
Q Consensus        82 p~RGskVrIlR~ESYWyn~vGtVvsVDq~~~~~rYPVvVRF~kv~  126 (126)
                      ++|||||||||||||||||+|||++|||+|  |||||+|||||||
T Consensus         2 i~RGskVrIlR~ESYWyn~vGtVasVD~sg--i~YPVvVRF~kVN   44 (73)
T 1gxi_E            2 LNRGDKVRIKRTESYWYGDVGTVASVEKSG--ILYPVIVRFDRVN   44 (73)
T ss_dssp             CCTTCCEEECCSSSTTTTEEECBCCTTTCC--SSSCEEECCSCSC
T ss_pred             ccCCCEEEEccccceeecCcceEEEEcCCC--CEeeEEEEEEeec
Confidence            689999999999999999999999999997  5999999999997

>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A

Probab=99.93  E-value=7.1e-27  Score=160.97  Aligned_cols=44  Identities=43%  Similarity=0.774  Sum_probs=42.1

Q ss_pred             CCCCCCeeEEeeccceeccccceEEEEccCCceeeeeEEEEeeecC
Q 033136           81 GPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK  126 (126)
Q Consensus        81 gp~RGskVrIlR~ESYWyn~vGtVvsVDq~~~~~rYPVvVRF~kv~  126 (126)
                      |++|||+|||||+||||||++|+|++|||++  ++|||+|||||||
T Consensus         1 Mi~rGs~VrIlr~eSywy~~vG~V~~Vd~~~--~~ypV~VrFekvN   44 (70)
T 1qp2_A            1 MVQRGSKVRILRPESYWFQDVGTVASVDQSG--IKYPVIVRFEKVN   44 (70)
T ss_dssp             CCCTTCEEEECCTTSTTTTCEEEEEEECCSS--CSCSEEEECSSCC
T ss_pred             CcCCCCEEEEcCccceeecceeEEEEEeCCC--cEeeEEEEecccc
Confidence            5899999999999999999999999999997  6999999999987

>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A

Probab=93.14  E-value=0.3  Score=31.17  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=34.5

Q ss_pred             CCCCCCCCCCCCeeEEeeccceeccccceEEEEccCCceeeeeEEEEeee
Q 033136           75 PKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNH  124 (126)
Q Consensus        75 ~kpppigp~RGskVrIlR~ESYWyn~vGtVvsVDq~~~~~rYPVvVRF~k  124 (126)
                      +.+++.+.+.|.|+..+-+..=||  +.||+.||..+.  +  +.|+|+.
T Consensus         6 ~~~~~~~F~vGmkLEa~d~~~p~~--~AtV~~v~~~~~--~--~~VhfdG   49 (69)
T 3sd4_A            6 PNRRGISFEVGAQLEARDRLKNWY--PAHIEDIDYEEG--K--VLIHFKR   49 (69)
T ss_dssp             CCCTTCCCSTTCEEEEECTTSCEE--EEEEEEEETTTT--E--EEEEETT
T ss_pred             CCCCCCCcCCCCEEEEEECCCCcc--ccEEEEEeccCC--E--EEEEeCC
Confidence            345688999999999987766674  899999986664  4  3889975

>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A

Probab=86.83  E-value=2.1  Score=28.91  Aligned_cols=45  Identities=24%  Similarity=0.398  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCCCCeeEEeeccceeccccceEEEEccCCceeeeeEEEEeee
Q 033136           74 KPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNH  124 (126)
Q Consensus        74 k~kpppigp~RGskVrIlR~ESYWyn~vGtVvsVDq~~~~~rYPVvVRF~k  124 (126)
                      .+..++.+.+.|.||..+-...-||  +..|..||..+.  +  +.|+|+.
T Consensus        12 ~~~~~~~~F~vGmkLEA~D~~~~~~--~a~i~~v~~~~~--~--v~VHfdG   56 (88)
T 2eqm_A           12 PPNRPGITFEIGARLEALDYLQKWY--PSRIEKIDYEEG--K--MLVHFER   56 (88)
T ss_dssp             CCSCSSCCCCSSCEEEEECTTSCEE--EEEEEEEETTTT--E--EEEEESS
T ss_pred             CCCCCcCcCCCCCEEEEEcCCCCee--EEEEEEEeccCC--E--EEEEECC
Confidence            3445678999999999998888897  566666776654  4  5899975

>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}

Probab=84.97  E-value=3.9  Score=28.51  Aligned_cols=43  Identities=23%  Similarity=0.358  Sum_probs=32.1

Q ss_pred             CCCCCCCCCCCeeEEeeccceeccccceEEEEccCCceeeeeEEEEeee
Q 033136           76 KPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNH  124 (126)
Q Consensus        76 kpppigp~RGskVrIlR~ESYWyn~vGtVvsVDq~~~~~rYPVvVRF~k  124 (126)
                      +-|-....-|+-|-+.-..--.|  .|||+.||+++.  +|  +|+|++
T Consensus        21 ~~p~~~f~eGeDVLarwsDGlfY--LGTI~kV~~~~e--~C--lV~F~D   63 (79)
T 2m0o_A           21 SGPRPRLWEGQDVLARWTDGLLY--LGTIKKVDSARE--VC--LVQFED   63 (79)
T ss_dssp             CSCCCCCCTTCEEEBCCTTSCCC--EEEEEEEETTTT--EE--EEEETT
T ss_pred             cCCcceeccCCEEEEEecCCCEE--eEEEEEeccCCC--EE--EEEEcC
Confidence            34557889999998865555444  699999999876  54  678864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d1jb0e_	69	b.34.4.2 (E:) Photosystem I accessory protein E (P	4e-13
d1qp3a_	70	b.34.4.2 (A:) Photosystem I accessory protein E (P	4e-12
d1gxie_	73	b.34.4.2 (E:) Photosystem I accessory protein E (P	1e-11

>d1jb0e_ b.34.4.2 (E:) Photosystem I accessory protein E (PsaE) {Synechococcus elongatus [TaxId: 32046]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: Electron transport accessory proteins
family: Photosystem I accessory protein E (PsaE)
domain: Photosystem I accessory protein E (PsaE)
species: Synechococcus elongatus [TaxId: 32046]

 Score = 57.5 bits (139), Expect = 4e-13
 Identities = 19/27 (70%), Positives = 24/27 (88%)

Query: 83  KRGAKVKILRRESYWYNGIGSVVAVDQ 109
           +RG+KVKILR ESYWYN +G+V +VDQ
Sbjct: 2   QRGSKVKILRPESYWYNEVGTVASVDQ 28

>d1qp3a_ b.34.4.2 (A:) Photosystem I accessory protein E (PsaE) {Cyanobacterium (Nostoc sp.), strain pcc8009 [TaxId: 1180]} Length = 70

class: All beta proteins
fold: SH3-like barrel
superfamily: Electron transport accessory proteins
family: Photosystem I accessory protein E (PsaE)
domain: Photosystem I accessory protein E (PsaE)
species: Cyanobacterium (Nostoc sp.), strain pcc8009 [TaxId: 1180]

 Score = 55.2 bits (133), Expect = 4e-12
 Identities = 16/27 (59%), Positives = 23/27 (85%)

Query: 83  KRGAKVKILRRESYWYNGIGSVVAVDQ 109
           +RG+KV+ILR ESYW+  +G+V +VDQ
Sbjct: 3   QRGSKVRILRPESYWFQDVGTVASVDQ 29

>d1gxie_ b.34.4.2 (E:) Photosystem I accessory protein E (PsaE) {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} Length = 73

class: All beta proteins
fold: SH3-like barrel
superfamily: Electron transport accessory proteins
family: Photosystem I accessory protein E (PsaE)
domain: Photosystem I accessory protein E (PsaE)
species: Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]

 Score = 54.1 bits (130), Expect = 1e-11
 Identities = 14/27 (51%), Positives = 20/27 (74%)

Query: 83  KRGAKVKILRRESYWYNGIGSVVAVDQ 109
            RG KV+I R ESYWY  +G+V +V++
Sbjct: 3   NRGDKVRIKRTESYWYGDVGTVASVEK 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d1jb0e_	69	Photosystem I accessory protein E (PsaE) {Synechoc	99.96
d1qp3a_	70	Photosystem I accessory protein E (PsaE) {Cyanobac	99.96
d1gxie_	73	Photosystem I accessory protein E (PsaE) {Cyanobac	99.95

>d1jb0e_ b.34.4.2 (E:) Photosystem I accessory protein E (PsaE) {Synechococcus elongatus [TaxId: 32046]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Electron transport accessory proteins
family: Photosystem I accessory protein E (PsaE)
domain: Photosystem I accessory protein E (PsaE)
species: Synechococcus elongatus [TaxId: 32046]

Probab=99.96  E-value=2.5e-30  Score=176.40  Aligned_cols=44  Identities=50%  Similarity=0.832  Sum_probs=41.6

Q ss_pred             CCCCCeeEEeeccceeccccceEEEEccCCceeeeeEEEEeeecC
Q 033136           82 PKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK  126 (126)
Q Consensus        82 p~RGskVrIlR~ESYWyn~vGtVvsVDq~~~~~rYPVvVRF~kv~  126 (126)
                      ++||||||||||||||||++|+|++|||+.+ |||||+|||||||
T Consensus         1 i~RGskVrIlR~ESYWyn~vGtVasvd~~~g-i~YPv~VRF~kvN   44 (69)
T d1jb0e_           1 VQRGSKVKILRPESYWYNEVGTVASVDQTPG-VKYPVIVRFDKVN   44 (69)
T ss_dssp             CCTTCEEEECCTTCTTBTCEEEEEEECCCTT-CSCCEEEECSSCC
T ss_pred             CCCCCEEEEccccceeecCcceEEEEeCCCC-cCccEEEEEeeee
Confidence            5899999999999999999999999999855 7999999999997

>d1qp3a_ b.34.4.2 (A:) Photosystem I accessory protein E (PsaE) {Cyanobacterium (Nostoc sp.), strain pcc8009 [TaxId: 1180]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Electron transport accessory proteins
family: Photosystem I accessory protein E (PsaE)
domain: Photosystem I accessory protein E (PsaE)
species: Cyanobacterium (Nostoc sp.), strain pcc8009 [TaxId: 1180]

Probab=99.96  E-value=2.5e-30  Score=176.78  Aligned_cols=44  Identities=43%  Similarity=0.774  Sum_probs=42.3

Q ss_pred             CCCCCCeeEEeeccceeccccceEEEEccCCceeeeeEEEEeeecC
Q 033136           81 GPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK  126 (126)
Q Consensus        81 gp~RGskVrIlR~ESYWyn~vGtVvsVDq~~~~~rYPVvVRF~kv~  126 (126)
                      +++||||||||||||||||++|+|++|||+|  +||||+|||||||
T Consensus         1 mi~rGskVrIlR~ESYWyn~vGtVasvd~sg--i~YPv~VRF~kvN   44 (70)
T d1qp3a_           1 MVQRGSKVRILRPESYWFQDVGTVASVDQSG--IKYPVIVRFEKVN   44 (70)
T ss_dssp             CCCTTCEEEECCTTSTTTTCEEEEEEECCSS--CSCSEEEECSSCC
T ss_pred             CcccCCEEEEccccceeecCcceEEEEccCC--CEeeEEEEEeeec
Confidence            5899999999999999999999999999998  5999999999997

>d1gxie_ b.34.4.2 (E:) Photosystem I accessory protein E (PsaE) {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Electron transport accessory proteins
family: Photosystem I accessory protein E (PsaE)
domain: Photosystem I accessory protein E (PsaE)
species: Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]

Probab=99.95  E-value=9.7e-30  Score=174.98  Aligned_cols=43  Identities=40%  Similarity=0.799  Sum_probs=41.4

Q ss_pred             CCCCCeeEEeeccceeccccceEEEEccCCceeeeeEEEEeeecC
Q 033136           82 PKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHFK  126 (126)
Q Consensus        82 p~RGskVrIlR~ESYWyn~vGtVvsVDq~~~~~rYPVvVRF~kv~  126 (126)
                      ++||||||||||||||||++|+|++|||+|  |||||+|||||||
T Consensus         2 i~RGskVrIlR~ESYWyn~vGtVasvD~sg--i~YPv~VRF~kvN   44 (73)
T d1gxie_           2 LNRGDKVRIKRTESYWYGDVGTVASVEKSG--ILYPVIVRFDRVN   44 (73)
T ss_dssp             CCTTCCEEECCSSSTTTTEEECBCCTTTCC--SSSCEEECCSCSC
T ss_pred             cccCCeEEEccccceeecccceEEEEccCC--CeeeEEEEEeeee
Confidence            689999999999999999999999999998  5999999999997