Citrus Sinensis ID: 033165

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKIAGTAFCS
Secondary Structure (PSIPRED)
ccccEEEEEEcccccHHHHHHcccHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHHcccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEcccccHHHHHHHccHHHHHHHHHHcccccEEEEEEEcccccccHHHHHccEEEEEccccccccccHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHcccEEcccccccccccc
Coil and Loop (DISEMBL)
MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVargefpddddfgsydgyvitgscndahgndVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHinaskiagtafcs
Flexible Loop (DISEMBL)
MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKIAGTAFCS
Low Complexity Region (SEG)
MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKIAGTAFCS
Disordered region (IsUnstruct)
*****FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKIAGTA***
Disordered Region (DISOPRED)
*GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKI*******
Disordered Region (DISEMBL)
MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKIAGTAFCS
Disordered Region (DISPRO)
**GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKI****FC*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKIAGTAFCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q12288	251	Putative glutamine amidot	yes	no	0.880	0.442	0.349	4e-10
Q09686	248	Putative glutamine amidot	yes	no	0.523	0.266	0.369	4e-06

>sp|Q12288|YL126_YEAST Putative glutamine amidotransferase YLR126C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR126C PE=1 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 15/126 (11%)

Query: 1   MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE--------EGETWDVFHVARGEFPD 52
           M  KK A+L   ED+E+  K +G +  + +++L +        E   ++VFHV +  FP 
Sbjct: 1   MTVKKIAILYTDEDNEW-SKPWGNFVDMAIKLLEQTRKLECIAEDVEYEVFHVQKNVFPQ 59

Query: 53  DDDFG--SYDGYVITGSCNDAHGNDV-WICKLIALLKQLDSLRKK---VLGICFGHQVRA 106
             D     Y G  ITGS  D+  N++ WI KL + L ++ + + +   V GICFGHQV A
Sbjct: 60  LSDLQKDEYLGIYITGSKYDSFDNEIEWIMKLRSFLNEMLTSKTEYPPVAGICFGHQVIA 119

Query: 107 ITVFSS 112
             + SS
Sbjct: 120 AALGSS 125

May have a role in copper and iron homeostasis.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: -

>sp|Q09686|YA14_SCHPO Putative glutamine amidotransferase-like protein C13C5.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC13C5.04 PE=4 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 7/73 (9%)

Query: 38  ETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRK---- 93
           +T++V+     ++P  +DF + +  +ITGS   A  +  WI KLI+ +K  D L K    
Sbjct: 48  KTYEVYK-NPNDYPQKEDFPNINAIIITGSKASATSDAPWIKKLISFVK--DVLFKYPHI 104

Query: 94  KVLGICFGHQVRA 106
           K++G+CFGHQ+ A
Sbjct: 105 KIVGLCFGHQIVA 117

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
449459550	243	PREDICTED: putative glutamine amidotrans	0.825	0.427	0.75	5e-41
356521239	245	PREDICTED: putative glutamine amidotrans	0.801	0.412	0.752	6e-41
296088793	299	unnamed protein product [Vitis vinifera]	0.825	0.347	0.730	2e-40
449521611	243	PREDICTED: LOW QUALITY PROTEIN: putative	0.825	0.427	0.740	3e-40
225464061	246	PREDICTED: putative glutamine amidotrans	0.825	0.422	0.730	4e-40
356524794	244	PREDICTED: putative glutamine amidotrans	0.825	0.426	0.730	9e-40
255584025	243	GMP synthase, putative [Ricinus communis	0.841	0.436	0.820	1e-37
357476183	261	GMP synthase [Medicago truncatula] gi|35	0.833	0.402	0.728	6e-37
357492799	245	GMP synthase [Medicago truncatula] gi|35	0.825	0.424	0.634	4e-35
224103849	241	predicted protein [Populus trichocarpa]	0.825	0.431	0.788	1e-34

>gi|449459550|ref|XP_004147509.1| PREDICTED: putative glutamine amidotransferase YLR126C-like [Cucumis sativus]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 89/104 (85%)

Query: 1   MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYD 60
           MG K+FA+LLCAEDSEYVK KYGGYFGVFVRML EEGE WD F VA GEFP DD    YD
Sbjct: 1   MGMKRFALLLCAEDSEYVKMKYGGYFGVFVRMLGEEGEAWDRFRVAAGEFPADDQIADYD 60

Query: 61  GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQV 104
           G+VI+GSCNDAHG+D WIC+LIALL++L SL K++LGICFGHQ+
Sbjct: 61  GFVISGSCNDAHGDDPWICRLIALLQRLASLNKRILGICFGHQI 104

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521239|ref|XP_003529264.1| PREDICTED: putative glutamine amidotransferase YLR126C-like [Glycine max]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 76/101 (75%), Positives = 89/101 (88%)

Query: 4   KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYV 63
           K+F VL+CAEDSEYVKK YGGY GVFVRMLAEEGETWDV+ VARGEFPD+DD G YDG+V
Sbjct: 5   KRFGVLMCAEDSEYVKKVYGGYSGVFVRMLAEEGETWDVYKVARGEFPDEDDLGLYDGFV 64

Query: 64  ITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQV 104
           ITGSC+DAHGND W+  L+ LL++LDS+  K+LGICFGHQ+
Sbjct: 65  ITGSCSDAHGNDTWVSDLLNLLRKLDSINTKILGICFGHQI 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088793|emb|CBI38243.3| unnamed protein product [Vitis vinifera]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/104 (73%), Positives = 92/104 (88%)

Query: 1   MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYD 60
           M  K+FAVLLCAEDSEYVKKKYGGY+GVFV+ML EEGE WDV+ VA G+FPDDD+ G Y 
Sbjct: 54  MVEKRFAVLLCAEDSEYVKKKYGGYYGVFVKMLGEEGEKWDVYRVALGQFPDDDEIGGYS 113

Query: 61  GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQV 104
           G+VITGSC+DAH +++WIC+LI LLK+LD ++KKVLGICFGHQ+
Sbjct: 114 GFVITGSCSDAHADELWICRLIDLLKKLDIMKKKVLGICFGHQI 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521611|ref|XP_004167823.1| PREDICTED: LOW QUALITY PROTEIN: putative glutamine amidotransferase YLR126C-like [Cucumis sativus]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/104 (74%), Positives = 88/104 (84%)

Query: 1   MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYD 60
           MG K+FA+LLCAEDSEYVK KYGGYFGVFVRML EEGE W  F VA GEFP DD    YD
Sbjct: 1   MGMKRFALLLCAEDSEYVKMKYGGYFGVFVRMLGEEGEAWGSFRVAAGEFPADDQIADYD 60

Query: 61  GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQV 104
           G+VI+GSCNDAHG+D WIC+LIALL++L SL K++LGICFGHQ+
Sbjct: 61  GFVISGSCNDAHGDDPWICRLIALLQRLASLNKRILGICFGHQI 104

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464061|ref|XP_002269193.1| PREDICTED: putative glutamine amidotransferase YLR126C [Vitis vinifera]

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/104 (73%), Positives = 92/104 (88%)

Query: 1   MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYD 60
           M  K+FAVLLCAEDSEYVKKKYGGY+GVFV+ML EEGE WDV+ VA G+FPDDD+ G Y 
Sbjct: 1   MVEKRFAVLLCAEDSEYVKKKYGGYYGVFVKMLGEEGEKWDVYRVALGQFPDDDEIGGYS 60

Query: 61  GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQV 104
           G+VITGSC+DAH +++WIC+LI LLK+LD ++KKVLGICFGHQ+
Sbjct: 61  GFVITGSCSDAHADELWICRLIDLLKKLDIMKKKVLGICFGHQI 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524794|ref|XP_003531013.1| PREDICTED: putative glutamine amidotransferase YLR126C-like [Glycine max]

 Score =  167 bits (424), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 76/104 (73%), Positives = 90/104 (86%)

Query: 1   MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYD 60
           M  K+F VL+CAEDSEYVKK YGGY GVFVRMLAEEGETWDV+ VA G+FPD+DD G YD
Sbjct: 1   MEKKRFGVLMCAEDSEYVKKVYGGYSGVFVRMLAEEGETWDVYKVACGDFPDEDDLGLYD 60

Query: 61  GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQV 104
           G+VITGSC+DAHGND W+  L+ LL++LDS+ KK+LGICFGHQ+
Sbjct: 61  GFVITGSCSDAHGNDTWVNDLLNLLRKLDSMNKKILGICFGHQI 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584025|ref|XP_002532757.1| GMP synthase, putative [Ricinus communis] gi|223527486|gb|EEF29614.1| GMP synthase, putative [Ricinus communis]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 97/106 (91%)

Query: 1   MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYD 60
           MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRML EEGETW V+ VA GEFPDDD+  ++D
Sbjct: 3   MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLGEEGETWAVYKVANGEFPDDDEIETFD 62

Query: 61  GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRA 106
           G+VITGSCNDAHGNDVWICKL+ LLK+LDS +KK+LGICFGHQ+ A
Sbjct: 63  GFVITGSCNDAHGNDVWICKLLNLLKKLDSKKKKILGICFGHQILA 108

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476183|ref|XP_003608377.1| GMP synthase [Medicago truncatula] gi|355509432|gb|AES90574.1| GMP synthase [Medicago truncatula]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 78/107 (72%), Positives = 93/107 (86%), Gaps = 2/107 (1%)

Query: 3   GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGY 62
           GK+F VLLCA+DSEYVKK YGGYFGVFVRML EEGE+WDV+ VARGEFPDD+D   YDG+
Sbjct: 5   GKRFGVLLCADDSEYVKKMYGGYFGVFVRMLEEEGESWDVYKVARGEFPDDEDLNLYDGF 64

Query: 63  VITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQV--RAI 107
           VITGSC+DAHGND W+ +L+ LLK+L+ + KK+LGICFGHQ+  RAI
Sbjct: 65  VITGSCSDAHGNDTWVSQLLNLLKKLNDMNKKILGICFGHQILGRAI 111

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492799|ref|XP_003616688.1| GMP synthase [Medicago truncatula] gi|355518023|gb|AES99646.1| GMP synthase [Medicago truncatula]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 66/104 (63%), Positives = 87/104 (83%)

Query: 1   MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYD 60
           +G K+F VLLCAEDSEYV K +GGY GVF++ML EE ETWD++ V+ GEFP DD+   YD
Sbjct: 4   IGCKRFGVLLCAEDSEYVIKMHGGYSGVFLKMLEEENETWDMYKVSCGEFPKDDELSLYD 63

Query: 61  GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQV 104
           G+VITGSCNDA+GN+ WIC L+ L+K+L+S++ K++G+CFGHQV
Sbjct: 64  GFVITGSCNDAYGNEKWICDLVTLIKKLNSMQTKIIGVCFGHQV 107

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103849|ref|XP_002313218.1| predicted protein [Populus trichocarpa] gi|222849626|gb|EEE87173.1| predicted protein [Populus trichocarpa]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/104 (78%), Positives = 96/104 (92%)

Query: 1   MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYD 60
           MGGK+FAVLLCAEDSEYV K +GGYFGVFVRMLAEEGETW V+ VA GEFP+DD+  ++D
Sbjct: 1   MGGKRFAVLLCAEDSEYVIKMHGGYFGVFVRMLAEEGETWIVYRVASGEFPEDDETDTFD 60

Query: 61  GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQV 104
           G+VITGSCNDAHGNDVWICKL++LLK+LDS +KK+LGICFGHQ+
Sbjct: 61  GFVITGSCNDAHGNDVWICKLLSLLKKLDSKKKKILGICFGHQI 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2061496	251	AT2G23970 [Arabidopsis thalian	0.801	0.402	0.603	2e-31
TAIR|locus:2118831	249	GGP3 "AT4G30550" [Arabidopsis	0.801	0.405	0.574	3.4e-29
TAIR|locus:2118821	250	GGP1 "AT4G30530" [Arabidopsis	0.817	0.412	0.553	5.6e-29
TAIR|locus:2061481	251	AT2G23960 [Arabidopsis thalian	0.817	0.410	0.533	3.5e-27
TAIR|locus:2118826	248	AT4G30540 "AT4G30540" [Arabido	0.801	0.407	0.504	1.2e-26
ASPGD|ASPL0000041723	284	AN8975 [Emericella nidulans (t	0.547	0.242	0.493	1.3e-11
TIGR_CMR|SPO_1301	226	SPO_1301 "glutamine amidotrans	0.793	0.442	0.323	2.2e-11
SGD|S000004116	251	YLR126C "Putative glutamine am	0.857	0.430	0.349	3.3e-11
UNIPROTKB|Q884M5	242	PSPTO_2063 "Uncharacterized pr	0.682	0.355	0.366	3.5e-11
ASPGD|ASPL0000054958	252	AN0200 [Emericella nidulans (t	0.833	0.416	0.35	6.8e-10

TAIR|locus:2061496 AT2G23970 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 61/101 (60%), Positives = 75/101 (74%)

Query:     4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYV 63
             K+FA+ L   DS +VKK YGGYF VFV    E+GE WD+F V  GEFPDD D   YDG+V
Sbjct:     6 KRFALFLATSDSTFVKKAYGGYFNVFVSTFGEDGEQWDLFRVIDGEFPDDKDLDKYDGFV 65

Query:    64 ITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQV 104
             I+GS NDA G+D WI KL +L ++LD ++KKVLGICFGHQ+
Sbjct:    66 ISGSLNDAFGDDDWIVKLCSLCQKLDDMKKKVLGICFGHQI 106

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

TAIR|locus:2118831 GGP3 "AT4G30550" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 58/101 (57%), Positives = 75/101 (74%)

Query:     4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYV 63
             K+FA+ L   DSE+VKK YGGYF VFV    EEGE WD+F V  G+FPD++D   YDG+V
Sbjct:     8 KRFALFLATCDSEFVKKTYGGYFNVFVSTFGEEGEQWDLFRVIDGQFPDENDLDKYDGFV 67

Query:    64 ITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQV 104
             I+GS +DA G+  WI KL  + ++LD ++KKVLGICFGHQ+
Sbjct:    68 ISGSPHDAFGDADWIVKLCEVCQKLDHMKKKVLGICFGHQI 108

GO:0003824 "catalytic activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0019281 "L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;RCA

GO:0008233 "peptidase activity" evidence=IDA

GO:0019760 "glucosinolate metabolic process" evidence=IMP

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2118821 GGP1 "AT4G30530" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 57/103 (55%), Positives = 74/103 (71%)

Query:     4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYV 63
             K++A+ L   DSE+VKK YGGY  VFV    +EGE WD F V  GEFPD+ D   YDG+V
Sbjct:     5 KRYALFLATLDSEFVKKTYGGYHNVFVTTFGDEGEHWDSFRVVSGEFPDEKDLEKYDGFV 64

Query:    64 ITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRA 106
             I+GS +DA  ND WI KL  ++K++D ++KK+LGICFGHQ+ A
Sbjct:    65 ISGSSHDAFENDDWILKLCDIVKKIDEMKKKILGICFGHQIIA 107

GO:0003824 "catalytic activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006749 "glutathione metabolic process" evidence=IDA

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008233 "peptidase activity" evidence=IDA

GO:0019760 "glucosinolate metabolic process" evidence=IMP

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TAIR|locus:2061481 AT2G23960 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 55/103 (53%), Positives = 72/103 (69%)

Query:     4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYV 63
             KK+ + L   DSE+ KK YGGY  VFV +L +EGE WD F V  GEFP++ D   Y+G+V
Sbjct:     5 KKYLLFLATPDSEFAKKTYGGYHNVFVSLLGDEGEQWDSFRVVDGEFPEEKDLEKYEGFV 64

Query:    64 ITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRA 106
             I+GS +DA  +  WI KL  ++K+LD + KKVLGICFGHQ+ A
Sbjct:    65 ISGSSHDAFQDTDWILKLCDIIKKLDDMNKKVLGICFGHQLIA 107

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

TAIR|locus:2118826 AT4G30540 "AT4G30540" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 51/101 (50%), Positives = 73/101 (72%)

Query:     4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYV 63
             +++A+     DSE+VK+ YGGYF VFV    +EGE WD+F V  GEFP D+D   Y+G+V
Sbjct:     6 RRYALFQATPDSEFVKEMYGGYFNVFVSAFGDEGEQWDLFRVIDGEFPRDEDLEKYEGFV 65

Query:    64 ITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQV 104
             I+GS +DA   + WI +L ++ K+LD ++KK+LGICFGHQ+
Sbjct:    66 ISGSLHDAFTEEDWIIELCSVCKKLDVMKKKILGICFGHQI 106

GO:0003824 "catalytic activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

ASPGD|ASPL0000041723 AN8975 [Emericella nidulans (taxid:162425)]

 Score = 161 (61.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 36/73 (49%), Positives = 47/73 (64%)

Query:    38 ETWDVFHVAR--GEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRK-- 93
             ET  VF V+   G  P  ++F S+DG +ITGS  DAHG+D WI +L+ LLK L   R   
Sbjct:    57 ETDQVFVVSEQGGRIPSLEEFDSFDGLLITGSLYDAHGDDEWILQLLELLKTLWIKRADF 116

Query:    94 KVLGICFGHQVRA 106
             + LG+CFGHQ+ A
Sbjct:   117 RFLGVCFGHQLLA 129

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|SPO_1301 SPO_1301 "glutamine amidotransferase, class I" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/102 (32%), Positives = 56/102 (54%)

Query:     5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVI 64
             K  +LL     + +    G Y   FVR+L  +   ++ + V  G+FP   D  + DG++I
Sbjct:     2 KIGILLTGHAPDTLVDATGDYDAFFVRLLGPQNFEFETYSVVDGQFPSGAD--AADGWLI 59

Query:    65 TGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRA 106
             TGS +  + +  WI  L AL++Q+    + ++G+CFGHQ+ A
Sbjct:    60 TGSRHGVYEDHPWIPPLEALIRQIRDQGQPLIGVCFGHQIIA 101

GO:0008152 "metabolic process" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=ISS

SGD|S000004116 YLR126C "Putative glutamine amidotransferase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 155 (59.6 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 43/123 (34%), Positives = 66/123 (53%)

Query:     4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE--------EGETWDVFHVARGEFPDDDD 55
             KK A+L   ED+E+  K +G +  + +++L +        E   ++VFHV +  FP   D
Sbjct:     4 KKIAILYTDEDNEW-SKPWGNFVDMAIKLLEQTRKLECIAEDVEYEVFHVQKNVFPQLSD 62

Query:    56 F--GSYDGYVITGSCNDAHGNDV-WICKLIALLKQLDSLRKK---VLGICFGHQVRAITV 109
                  Y G  ITGS  D+  N++ WI KL + L ++ + + +   V GICFGHQV A  +
Sbjct:    63 LQKDEYLGIYITGSKYDSFDNEIEWIMKLRSFLNEMLTSKTEYPPVAGICFGHQVIAAAL 122

Query:   110 FSS 112
              SS
Sbjct:   123 GSS 125

GO:0006878 "cellular copper ion homeostasis" evidence=IEP;ISS

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0006879 "cellular iron ion homeostasis" evidence=IEP;ISS

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|Q884M5 PSPTO_2063 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 33/90 (36%), Positives = 53/90 (58%)

Query:    20 KKYGGYFGVFVRMLAEE--GETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVW 77
             ++Y GY  +F R+ A +       V++V +G +P + +   +D Y++TGS  D+ G D W
Sbjct:    19 EQYHGYGRMFERLFARQPIAAELSVYNVVQGVYPPEGE--KFDAYLVTGSKADSFGTDPW 76

Query:    78 ICKLIALLKQLDSLRKKVLGICFGHQVRAI 107
             I  L   L +L    +K+LGICFGHQ+ A+
Sbjct:    77 IQTLKVYLLELYQRGEKLLGICFGHQLLAL 106

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000054958 AN0200 [Emericella nidulans (taxid:162425)]

 Score = 144 (55.7 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 42/120 (35%), Positives = 63/120 (52%)

Query:     5 KFAVLLCAEDSEYVKKKYGGYFGVF-------VRML--AEEGETWDVFHVARGEF---PD 52
             + AVL C    E    KYGGY GVF       VR L   EE +   +  ++R +     +
Sbjct:     7 RIAVLECDTPPESSNAKYGGYVGVFKTLLYSSVRELYKQEEVDPSSILEISRFDVVTAQN 66

Query:    53 DDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQ-LDSLRKKVLGICFGHQV--RAITV 109
               D  + D  ++TGS +++  +  WI KL+   K+ ++  R K+LGICFGHQ+  RA+ V
Sbjct:    67 YPDLANVDAVLLTGSKHNSFEDHPWILKLVEFTKKAIEHPRVKLLGICFGHQIIGRALGV 126

GO:0071585 "detoxification of cadmium ion" evidence=IEA

GO:0071276 "cellular response to cadmium ion" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
cd01741	188	cd01741, GATase1_1, Subgroup of proteins having th	3e-18
PRK05665	240	PRK05665, PRK05665, amidotransferase; Provisional	1e-17
COG0518	198	COG0518, GuaA, GMP synthase - Glutamine amidotrans	7e-11
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	3e-10
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	1e-09
PRK09065	237	PRK09065, PRK09065, glutamine amidotransferase; Pr	0.001

>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

 Score = 75.7 bits (187), Expect = 3e-18
 Identities = 33/101 (32%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 5   KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVI 64
           +  +L              G F   +R    E    DV  V  GE   D D   YDG VI
Sbjct: 1   RILILQHDTPEG------PGLFEDLLREAGAETIEIDVVDVYAGELLPDLD--DYDGLVI 52

Query: 65  TGSCNDAHGNDV-WICKLIALLKQLDSLRKKVLGICFGHQV 104
            G       +D  W+ KL  L++Q  +  K VLGIC GHQ+
Sbjct: 53  LGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQL 93

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 188

>gnl|CDD|168162 PRK05665, PRK05665, amidotransferase; Provisional

 Score = 74.8 bits (184), Expect = 1e-17
 Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 4/91 (4%)

Query: 21  KYGGYFGVFVRMLAEEGETW--DVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI 78
           +Y GY  +F ++ A +       V++V +G++P DD+   +D Y++TGS  D+ G D WI
Sbjct: 20  QYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPADDE--KFDAYLVTGSKADSFGTDPWI 77

Query: 79  CKLIALLKQLDSLRKKVLGICFGHQVRAITV 109
             L   L +L     K+LG+CFGHQ+ A+ +
Sbjct: 78  QTLKTYLLKLYERGDKLLGVCFGHQLLALLL 108

Length = 240

>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

 Score = 56.5 bits (137), Expect = 7e-11
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 31  RMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDS 90
           R L E G  +       G+  +     S DG +I+G     +  D W+ +   L+K    
Sbjct: 19  RRLRELGYVYSEIVPYTGDAEELPLD-SPDGIIISGGPMSVYDEDPWLPREKDLIKDAGV 77

Query: 91  LRKKVLGICFGHQV 104
             K VLGIC GHQ+
Sbjct: 78  PGKPVLGICLGHQL 91

Length = 198

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 53.0 bits (127), Expect = 3e-10
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 26  FGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALL 85
               +  L E G   DV     G    D D   YDG ++ G       +      L+ALL
Sbjct: 14  LASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGG-PGTPDDLARDEALLALL 72

Query: 86  KQLDSLRKKVLGICFGHQVRAITV 109
           ++  +  K +LGIC G Q+  + V
Sbjct: 73  REAAAAGKPILGICLGAQLLVLGV 96

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 51.0 bits (122), Expect = 1e-09
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 24  GYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83
                 +  L E G   DV     G    D D   YDG ++ G       +  W   L+A
Sbjct: 12  LELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD-DLAWDEALLA 70

Query: 84  LLKQLDSLRKKVLGICFGHQV 104
           LL++  +  K VLGIC G Q+
Sbjct: 71  LLREAAAAGKPVLGICLGAQL 91

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 4   KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYV 63
           K   ++        ++ +YG +       L    +   V  V  GE     D   + G +
Sbjct: 2   KPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGEPLPAPD--DFAGVI 59

Query: 64  ITGS---CNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRA 106
           ITGS     D      W  +    L+Q  +    +LGIC+GHQ+ A
Sbjct: 60  ITGSWAMVTDRLD---WSERTADWLRQAAAAGMPLLGICYGHQLLA 102

Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
PRK05665	240	amidotransferase; Provisional	99.97
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	99.96
PRK09065	237	glutamine amidotransferase; Provisional	99.96
PRK06490	239	glutamine amidotransferase; Provisional	99.93
PRK07053	234	glutamine amidotransferase; Provisional	99.91
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	99.89
PRK07567	242	glutamine amidotransferase; Provisional	99.89
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	99.88
PRK06895	190	putative anthranilate synthase component II; Provi	99.87
PRK08250	235	glutamine amidotransferase; Provisional	99.87
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	99.85
PRK08007	187	para-aminobenzoate synthase component II; Provisio	99.84
PRK06774	191	para-aminobenzoate synthase component II; Provisio	99.83
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	99.82
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	99.82
PRK08857	193	para-aminobenzoate synthase component II; Provisio	99.81
PRK07765	214	para-aminobenzoate synthase component II; Provisio	99.81
PRK05637	208	anthranilate synthase component II; Provisional	99.81
PRK05670	189	anthranilate synthase component II; Provisional	99.81
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	99.81
CHL00101	190	trpG anthranilate synthase component 2	99.8
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	99.8
PLN02335	222	anthranilate synthase	99.78
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	99.76
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	99.76
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	99.75
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	99.75
PRK00758	184	GMP synthase subunit A; Validated	99.75
PLN02889	918	oxo-acid-lyase/anthranilate synthase	99.74
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	99.72
PLN02347	536	GMP synthetase	99.71
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	99.71
PRK05368	302	homoserine O-succinyltransferase; Provisional	99.7
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	99.69
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	99.69
PRK13566	720	anthranilate synthase; Provisional	99.68
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	99.68
PRK00074	511	guaA GMP synthase; Reviewed	99.68
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	99.67
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	99.66
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	99.65
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	99.64
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	99.64
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	99.62
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	99.62
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	99.62
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	99.62
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	99.61
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	99.6
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	99.59
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	99.58
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	99.58
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	99.56
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	99.55
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	99.55
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.55
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	99.53
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	99.52
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	99.5
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	99.47
KOG0026	223	consensus Anthranilate synthase, beta chain [Amino	99.47
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	99.46
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	99.45
PRK05380	533	pyrG CTP synthetase; Validated	99.43
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	99.43
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	99.42
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.42
KOG1622	552	consensus GMP synthase [Nucleotide transport and m	99.42
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	99.4
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.39
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	99.38
PRK06186	229	hypothetical protein; Validated	99.38
PLN02617	538	imidazole glycerol phosphate synthase hisHF	99.36
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	99.36
KOG1224	767	consensus Para-aminobenzoate (PABA) synthase ABZ1	99.35
COG2071	243	Predicted glutamine amidotransferases [General fun	99.35
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	99.33
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	99.32
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	99.3
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	99.3
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	99.26
PLN02327	557	CTP synthase	99.22
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	99.21
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	99.03
PRK00784	488	cobyric acid synthase; Provisional	99.02
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	98.98
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	98.95
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	98.93
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	98.89
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.88
PF04204	298	HTS: Homoserine O-succinyltransferase ; InterPro:	98.85
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.85
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	98.81
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	98.8
TIGR01001	300	metA homoserine O-succinyltransferase. The apparen	98.8
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	98.8
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	98.79
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	98.78
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	98.75
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	98.73
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	98.73
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.7
TIGR00313	475	cobQ cobyric acid synthase CobQ.	98.7
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	98.68
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	98.67
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	98.66
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	98.66
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	98.64
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	98.63
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	98.62
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	98.61
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	98.59
PRK04155	287	chaperone protein HchA; Provisional	98.58
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	98.55
PHA03366	1304	FGAM-synthase; Provisional	98.47
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	98.41
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	98.4
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	98.28
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	98.28
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	98.27
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	98.26
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	98.24
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	98.22
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	98.14
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	98.13
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	98.1
COG3442	250	Predicted glutamine amidotransferase [General func	98.09
PRK11249	752	katE hydroperoxidase II; Provisional	98.05
COG1897	307	MetA Homoserine trans-succinylase [Amino acid tran	98.03
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	98.0
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	97.97
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	97.95
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	97.94
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	97.9
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	97.83
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	97.63
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	97.61
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	97.56
KOG2764	247	consensus Putative transcriptional regulator DJ-1	97.39
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	97.16
KOG1907	1320	consensus Phosphoribosylformylglycinamidine syntha	97.1
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	97.02
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	96.84
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	96.64
COG3155	217	ElbB Uncharacterized protein involved in an early	96.62
PRK03372	306	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	96.5
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	96.37
PRK02645	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	96.36
KOG1559	340	consensus Gamma-glutamyl hydrolase [Coenzyme trans	96.27
COG4635	175	HemG Flavodoxin [Energy production and conversion	95.61
PRK11104	177	hemG protoporphyrinogen oxidase; Provisional	95.57
PRK03378	292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.5
PRK02155	291	ppnK NAD(+)/NADH kinase family protein; Provisiona	95.11
PRK02649	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.01
COG4090	154	Uncharacterized protein conserved in archaea [Func	94.99
PRK06756	148	flavodoxin; Provisional	94.92
PRK01231	295	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	94.89
PRK01911	292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	94.8
COG4977	328	Transcriptional regulator containing an amidase do	94.74
PRK03708	277	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	94.71
PRK14077	287	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	94.5
PRK04539	296	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	94.45
TIGR02667	163	moaB_proteo molybdenum cofactor biosynthesis prote	94.15
PF06283	217	ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.	93.96
PF00885	144	DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synt	93.78
PRK01215	264	competence damage-inducible protein A; Provisional	93.67
PRK09271	160	flavodoxin; Provisional	93.54
COG4285	253	Uncharacterized conserved protein [Function unknow	93.34
PRK06703	151	flavodoxin; Provisional	93.01
PLN02929	301	NADH kinase	92.99
cd00886	152	MogA_MoaB MogA_MoaB family. Members of this family	92.76
PF03698	80	UPF0180: Uncharacterised protein family (UPF0180);	92.48
PRK14076	569	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	92.39
PRK14569	296	D-alanyl-alanine synthetase A; Provisional	91.53
PRK03767	200	NAD(P)H:quinone oxidoreductase; Provisional	91.5
PRK05569	141	flavodoxin; Provisional	91.5
cd03142	215	GATase1_ThuA Type 1 glutamine amidotransferase (GA	91.13
PRK07308	146	flavodoxin; Validated	90.99
TIGR00853	95	pts-lac PTS system, lactose/cellobiose family IIB	90.86
PRK09417	193	mogA molybdenum cofactor biosynthesis protein MogA	90.7
PF09897	147	DUF2124: Uncharacterized protein conserved in arch	90.56
PRK09267	169	flavodoxin FldA; Validated	90.51
PF03358	152	FMN_red: NADPH-dependent FMN reductase; InterPro:	90.37
PRK03094	80	hypothetical protein; Provisional	89.97
PRK03673	396	hypothetical protein; Provisional	89.96
cd05014	128	SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5	89.77
PRK06455	155	riboflavin synthase; Provisional	89.76
PRK01372	304	ddl D-alanine--D-alanine ligase; Reviewed	89.75
TIGR00177	144	molyb_syn molybdenum cofactor synthesis domain. Th	89.69
PRK04885	265	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	89.55
PRK11914	306	diacylglycerol kinase; Reviewed	89.52
COG5426	254	Uncharacterized membrane protein [Function unknown	88.76
cd00885	170	cinA Competence-damaged protein. CinA is the first	88.33
PRK09739	199	hypothetical protein; Provisional	87.98
PRK01185	271	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	87.84
PRK05568	142	flavodoxin; Provisional	87.62
PRK14075	256	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	87.5
TIGR01754	140	flav_RNR ribonucleotide reductase-associated flavo	87.0
PRK00561	259	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	86.78
PRK13054	300	lipid kinase; Reviewed	86.77
PRK00061	154	ribH 6,7-dimethyl-8-ribityllumazine synthase; Prov	86.63
TIGR00200	413	cinA_nterm competence/damage-inducible protein Cin	86.23
PRK12419	158	riboflavin synthase subunit beta; Provisional	85.25
PLN02935	508	Bifunctional NADH kinase/NAD(+) kinase	84.94
PF09822	271	ABC_transp_aux: ABC-type uncharacterized transport	84.88
PRK03501	264	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	84.81
PRK14690	419	molybdopterin biosynthesis protein MoeA; Provision	84.69
cd00758	133	MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) bindin	84.68
TIGR01755	197	flav_wrbA NAD(P)H:quinone oxidoreductase, type IV.	84.67
PRK03670	252	competence damage-inducible protein A; Provisional	84.63
PRK00549	414	competence damage-inducible protein A; Provisional	84.19
PRK13055	334	putative lipid kinase; Reviewed	83.61
cd03522	312	MoeA_like MoeA_like. This domain is similar to a d	83.54
COG1058	255	CinA Predicted nucleotide-utilizing enzyme related	82.35
smart00852	135	MoCF_biosynth Probable molybdopterin binding domai	82.01
PRK10680	411	molybdopterin biosynthesis protein MoeA; Provision	81.64
COG0054	152	RibH Riboflavin synthase beta-chain [Coenzyme meta	81.1
PRK10499	106	PTS system N,N'-diacetylchitobiose-specific transp	81.02
PF09075	48	STb_secrete: Heat-stable enterotoxin B, secretory;	80.47
PLN02404	141	6,7-dimethyl-8-ribityllumazine synthase	80.41
PRK02231	272	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	80.07
TIGR00147	293	lipid kinase, YegS/Rv2252/BmrU family. The E. coli	80.06

>PRK05665 amidotransferase; Provisional

Probab=99.97  E-value=2.7e-29  Score=187.93  Aligned_cols=115  Identities=31%  Similarity=0.553  Sum_probs=103.5

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC--CeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG--ETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI   78 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~   78 (126)
                      |+| ||+||+++.+.+.+.+.||+|.++|.++|...+  .+++++++..+++|.  ++++|||+||+||+++++++.+|+
T Consensus         1 ~~m-ki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~--~~~~~dgiiitGs~~~v~~~~pwi   77 (240)
T PRK05665          1 MSL-RICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPA--DDEKFDAYLVTGSKADSFGTDPWI   77 (240)
T ss_pred             Cce-EEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCC--CcccCCEEEECCCCCCccccchHH
Confidence            666 699999999999999999999999999998876  457777877766664  578899999999999999988999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCc
Q 033165           79 CKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASK  118 (126)
Q Consensus        79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~  118 (126)
                      .++.++|++++++++|+||||||||+||+++||+|.++++
T Consensus        78 ~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~  117 (240)
T PRK05665         78 QTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQ  117 (240)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCC
Confidence            9999999999999999999999999999999999998763

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=99.96  E-value=2.7e-29  Score=181.32  Aligned_cols=119  Identities=51%  Similarity=0.907  Sum_probs=113.0

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK   80 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~   80 (126)
                      |..+|+|++.+.++.+.+.+.||.|.+++..+|++.|.+|+.+++.++++|..+++++|+|++|+||..+++++.+|+.+
T Consensus         2 ~~~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d~dWI~K   81 (245)
T KOG3179|consen    2 MEQKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSDADWIKK   81 (245)
T ss_pred             ccceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccccchHHHH
Confidence            55689999999999999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCcc
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKI  119 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~~  119 (126)
                      +..+++++....+||+|||||||++|++.|++|.+++|-
T Consensus        82 Lcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~KG  120 (245)
T KOG3179|consen   82 LCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPKG  120 (245)
T ss_pred             HHHHHHHHHhhccceEEEeccHHHHHHhhCCccccCCCC
Confidence            999999998888999999999999999999999998753

>PRK09065 glutamine amidotransferase; Provisional

Probab=99.96  E-value=3.8e-28  Score=181.38  Aligned_cols=113  Identities=21%  Similarity=0.264  Sum_probs=102.9

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      |+||+||+++.+.+.++++||+|.+++.+.+...+.+++++++..++.+  .++.+||+|||+||+.+++++.+|+.++.
T Consensus         1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~dgvvi~Gg~~~~~d~~~w~~~~~   78 (237)
T PRK09065          1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGEPL--PAPDDFAGVIITGSWAMVTDRLDWSERTA   78 (237)
T ss_pred             CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCCCC--CChhhcCEEEEeCCCcccCCCchhHHHHH
Confidence            5789999999999999999999999999999999999999998865421  25688999999999999998889999999


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      ++|+++++.++|+||||+|||+|++++||+|.+.+
T Consensus        79 ~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~  113 (237)
T PRK09065         79 DWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNP  113 (237)
T ss_pred             HHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCC
Confidence            99999999999999999999999999999998764

>PRK06490 glutamine amidotransferase; Provisional

Probab=99.93  E-value=4.3e-25  Score=165.17  Aligned_cols=111  Identities=24%  Similarity=0.271  Sum_probs=95.2

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKL   81 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~   81 (126)
                      .++||+||++...         +|.+++.++|++.|.+++++++..++ +.++++++||++||+||+.+++++.+|+..+
T Consensus         6 ~~~~vlvi~h~~~---------~~~g~l~~~l~~~g~~~~v~~~~~~~-~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~   75 (239)
T PRK06490          6 DKRPVLIVLHQER---------STPGRVGQLLQERGYPLDIRRPRLGD-PLPDTLEDHAGAVIFGGPMSANDPDDFIRRE   75 (239)
T ss_pred             CCceEEEEecCCC---------CCChHHHHHHHHCCCceEEEeccCCC-CCCCcccccCEEEEECCCCCCCCCchHHHHH
Confidence            3689999999775         46678899999999999999887543 2233678999999999999999988999999


Q ss_pred             HHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCc---cccc
Q 033165           82 IALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASK---IAGT  122 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~---~~g~  122 (126)
                      .++|+++++.++|+||||+|||+|++++||+|.+.++   .+|+
T Consensus        76 ~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~~e~G~  119 (239)
T PRK06490         76 IDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPDGRVEIGY  119 (239)
T ss_pred             HHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCCCCccce
Confidence            9999999999999999999999999999999998652   5554

>PRK07053 glutamine amidotransferase; Provisional

Probab=99.91  E-value=1.3e-23  Score=156.80  Aligned_cols=110  Identities=22%  Similarity=0.194  Sum_probs=93.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCC--chHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGN--DVWICK   80 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~--~~~~~~   80 (126)
                      |+||+|+++.+...         .+.+.++|++.|.+++++++..++.+. .++.+||+|||+|||.+++++  .+|+..
T Consensus         2 m~~ilviqh~~~e~---------~g~i~~~L~~~g~~~~v~~~~~~~~~~-~~~~~~d~lii~Ggp~~~~d~~~~p~~~~   71 (234)
T PRK07053          2 MKTAVAIRHVAFED---------LGSFEQVLGARGYRVRYVDVGVDDLET-LDALEPDLLVVLGGPIGVYDDELYPFLAP   71 (234)
T ss_pred             CceEEEEECCCCCC---------ChHHHHHHHHCCCeEEEEecCCCccCC-CCccCCCEEEECCCCCCCCCCCcCCcHHH
Confidence            67999999988754         235778888999999999987655432 256789999999999999875  489999


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC-Cccccc
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA-SKIAGT  122 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~-~~~~g~  122 (126)
                      +.++|+++++.++|+||||+|||+|++++||+|.++ .+++|+
T Consensus        72 ~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~  114 (234)
T PRK07053         72 EIALLRQRLAAGLPTLGICLGAQLIARALGARVYPGGQKEIGW  114 (234)
T ss_pred             HHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecCCCCeEeE
Confidence            999999999999999999999999999999999975 356665

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.89  E-value=1.2e-22  Score=148.28  Aligned_cols=110  Identities=26%  Similarity=0.375  Sum_probs=88.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      +.+|+|++.+.          .|++.+.+++++.|..+..+.+...+... ....++|++||+|||++++++.+|..++.
T Consensus         1 ~~~ilIld~g~----------q~~~li~r~~re~g~v~~e~~~~~~~~~~-~~~~~~~giIlsGgp~sv~~~~~w~~~~~   69 (198)
T COG0518           1 MRKILILDFGG----------QYLGLIARRLRELGYVYSEIVPYTGDAEE-LPLDSPDGIIISGGPMSVYDEDPWLPREK   69 (198)
T ss_pred             CcEEEEEeCCC----------cHhHHHHHHHHHcCCceEEEEeCCCCccc-ccccCCCEEEEcCCCCCCccccccchhHH
Confidence            46888987766          47888999999999555444443322211 13356799999999999999888999999


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-cccccc
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGTA  123 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~~  123 (126)
                      ++|.++...++|+||||+|||+||.+|||+|.+++ +++|+.
T Consensus        70 ~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~~~E~G~~  111 (198)
T COG0518          70 DLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGPKREIGWT  111 (198)
T ss_pred             HHHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccCCCccceE
Confidence            99999887888999999999999999999999976 788875

>PRK07567 glutamine amidotransferase; Provisional

Probab=99.89  E-value=1.2e-22  Score=152.21  Aligned_cols=115  Identities=17%  Similarity=0.226  Sum_probs=83.8

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCC----chHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGN----DVWI   78 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~----~~~~   78 (126)
                      |++|+||++++.+ .++.  |+|..++.+ .......++++++...+.|. .++++||+|||+||+.+++++    .+|+
T Consensus         1 m~~ililq~~~~~-~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~   75 (242)
T PRK07567          1 MKPFLLLSPRPED-EAAD--AEYAAFLRY-TGLDPAELRRIRLDREPLPD-LDLDDYSGVIVGGSPFNVSDPAESKSPWQ   75 (242)
T ss_pred             CCcEEEEecCCCc-cccc--chHHHHHHh-cCCCccceEEEecccCCCCC-CCHhhccEEEEcCCCCcCCCCCCccchHH
Confidence            5679999999984 3322  666555543 22223347777776654433 267899999999999999886    6899


Q ss_pred             HHHHHHHHH----HHhcCCcEEEEchHHHHHHHHhCCccccC-Cccccc
Q 033165           79 CKLIALLKQ----LDSLRKKVLGICFGHQVRAITVFSSHINA-SKIAGT  122 (126)
Q Consensus        79 ~~~~~~i~~----~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~-~~~~g~  122 (126)
                      ..+.++|++    +.+.++|+||||+|||+|++++||+|.+. .+++|+
T Consensus        76 ~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~g~e~G~  124 (242)
T PRK07567         76 RRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTYGEPVGA  124 (242)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCCCCcCcc
Confidence            876655544    44789999999999999999999999873 234554

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.88  E-value=1.2e-22  Score=146.15  Aligned_cols=103  Identities=18%  Similarity=0.225  Sum_probs=82.2

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-CCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-DDFGSYDGYVITGSCNDAHGNDVWICKL   81 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-~~~~~~d~iii~G~~~~~~~~~~~~~~~   81 (126)
                      |++|+++          ||||||++++.++|++.|.++.+++-.  +.... -+..++|+|||+.||.++.|    ....
T Consensus         1 ~~~IL~I----------DNyDSFtyNLv~yl~~lg~~v~V~rnd--~~~~~~~~~~~pd~iviSPGPG~P~d----~G~~   64 (191)
T COG0512           1 MMMILLI----------DNYDSFTYNLVQYLRELGAEVTVVRND--DISLELIEALKPDAIVISPGPGTPKD----AGIS   64 (191)
T ss_pred             CceEEEE----------ECccchHHHHHHHHHHcCCceEEEECC--ccCHHHHhhcCCCEEEEcCCCCChHH----cchH
Confidence            5688888          458899999999999999999988843  12111 12246999999999998854    2346


Q ss_pred             HHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCccccc
Q 033165           82 IALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKIAGT  122 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~~~g~  122 (126)
                      .++|+++ ..++|+||||+|||.|++++||+|.+++++++.
T Consensus        65 ~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HG  104 (191)
T COG0512          65 LELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHG  104 (191)
T ss_pred             HHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCCcCC
Confidence            6778887 567999999999999999999999999877764

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=99.87  E-value=1.2e-21  Score=141.74  Aligned_cols=96  Identities=19%  Similarity=0.254  Sum_probs=77.6

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      |||+|+++          +++|+.++.++|++.|.+++++++...+   +++++++|+|||+|||..+ +   +...+.+
T Consensus         2 ~~iliid~----------~dsf~~~i~~~l~~~g~~~~v~~~~~~~---~~~l~~~d~iIi~gGp~~~-~---~~~~~~~   64 (190)
T PRK06895          2 TKLLIINN----------HDSFTFNLVDLIRKLGVPMQVVNVEDLD---LDEVENFSHILISPGPDVP-R---AYPQLFA   64 (190)
T ss_pred             cEEEEEeC----------CCchHHHHHHHHHHcCCcEEEEECCccC---hhHhccCCEEEECCCCCCh-H---HhhHHHH
Confidence            78999966          5579999999999999999999875432   2357789999999999754 2   2334566


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      +|++ ++.++|+||||+|||+|+.++||+|.+.+
T Consensus        65 ~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~   97 (190)
T PRK06895         65 MLER-YHQHKSILGVCLGHQTLCEFFGGELYNLN   97 (190)
T ss_pred             HHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecC
Confidence            7776 56799999999999999999999998754

>PRK08250 glutamine amidotransferase; Provisional

Probab=99.87  E-value=2.2e-21  Score=144.74  Aligned_cols=109  Identities=16%  Similarity=0.222  Sum_probs=87.5

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCC---CchHH--
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHG---NDVWI--   78 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~---~~~~~--   78 (126)
                      |||+|+++..-.+.         ..+..++++.|.+++++++..++ +.+.++++||+|||+||+.++.+   +.+|+  
T Consensus         1 m~i~vi~h~~~e~~---------g~~~~~~~~~g~~~~~~~~~~g~-~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~   70 (235)
T PRK08250          1 MRVHFIIHESFEAP---------GAYLKWAENRGYDISYSRVYAGE-ALPENADGFDLLIVMGGPQSPRTTREECPYFDS   70 (235)
T ss_pred             CeEEEEecCCCCCc---------hHHHHHHHHCCCeEEEEEccCCC-CCCCCccccCEEEECCCCCChhhccccccccch
Confidence            58999999887653         23556667789999998887654 22235678999999999988643   45788  


Q ss_pred             HHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165           79 CKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT  122 (126)
Q Consensus        79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~  122 (126)
                      ..+.++|+++++.++|+||||+|+|+|++++||+|.+++ +++|+
T Consensus        71 ~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~  115 (235)
T PRK08250         71 KAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPEKEIGY  115 (235)
T ss_pred             HHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCCCceeE
Confidence            678899999999999999999999999999999999865 46665

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.85  E-value=1.1e-20  Score=135.82  Aligned_cols=103  Identities=33%  Similarity=0.470  Sum_probs=85.3

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC---CeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC-CCCchHHHH
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG---ETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA-HGNDVWICK   80 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~-~~~~~~~~~   80 (126)
                      ||+||+++.+.+         .+.+.+++++.+   .+++++++...+.  ..+++++|+||++||+.++ ++..+|+..
T Consensus         1 ~i~il~~~~~~~---------~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~~~~~~~~~~~~~   69 (188)
T cd01741           1 RILILQHDTPEG---------PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPMSVDEDDYPWLKK   69 (188)
T ss_pred             CEEEEECCCCCC---------cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCccCCccCChHHHH
Confidence            689999999864         123556666666   6888888876543  2367899999999999888 566689999


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCc
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASK  118 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~  118 (126)
                      +.++++.+.++++|++|||+|+|+|+.++||++.+.++
T Consensus        70 ~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~  107 (188)
T cd01741          70 LKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPK  107 (188)
T ss_pred             HHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCC
Confidence            99999999999999999999999999999999998754

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=99.84  E-value=5.1e-21  Score=138.37  Aligned_cols=93  Identities=19%  Similarity=0.203  Sum_probs=71.1

Q ss_pred             HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165           20 KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC   99 (126)
Q Consensus        20 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC   99 (126)
                      ||||||++++.++|++.|.++.+++....++... ...++|+|||+|||.++.+..    ...++++. ++.++|+||||
T Consensus         6 dn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~-~~~~~d~iils~GPg~p~~~~----~~~~~~~~-~~~~~PiLGIC   79 (187)
T PRK08007          6 DNYDSFTWNLYQYFCELGADVLVKRNDALTLADI-DALKPQKIVISPGPCTPDEAG----ISLDVIRH-YAGRLPILGVC   79 (187)
T ss_pred             ECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH-HhcCCCEEEEcCCCCChHHCC----ccHHHHHH-hcCCCCEEEEC
Confidence            4678999999999999999999988542111111 113699999999999986542    23445555 45789999999


Q ss_pred             hHHHHHHHHhCCccccCCc
Q 033165          100 FGHQVRAITVFSSHINASK  118 (126)
Q Consensus       100 ~G~Q~la~~~Gg~v~~~~~  118 (126)
                      +|||+|+.++||++.+.++
T Consensus        80 lG~Q~la~a~Gg~v~~~~~   98 (187)
T PRK08007         80 LGHQAMAQAFGGKVVRAAK   98 (187)
T ss_pred             HHHHHHHHHcCCEEEeCCC
Confidence            9999999999999998654

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=99.83  E-value=1.2e-20  Score=136.60  Aligned_cols=91  Identities=16%  Similarity=0.233  Sum_probs=70.6

Q ss_pred             HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEE
Q 033165           20 KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLG   97 (126)
Q Consensus        20 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlG   97 (126)
                      ++||||++++.++|++.|.++++++.....+   +++  .++|+||++|||.++.++..    ..++++. .+.++|+||
T Consensus         6 d~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~---~~~~~~~~~~iilsgGP~~~~~~~~----~~~~i~~-~~~~~PiLG   77 (191)
T PRK06774          6 DNYDSFTYNLYQYFCELGTEVMVKRNDELQL---TDIEQLAPSHLVISPGPCTPNEAGI----SLAVIRH-FADKLPILG   77 (191)
T ss_pred             ECCCchHHHHHHHHHHCCCcEEEEeCCCCCH---HHHHhcCCCeEEEcCCCCChHhCCC----chHHHHH-hcCCCCEEE
Confidence            4578999999999999999999888542211   122  36899999999999876532    2344544 457899999


Q ss_pred             EchHHHHHHHHhCCccccCCc
Q 033165           98 ICFGHQVRAITVFSSHINASK  118 (126)
Q Consensus        98 IC~G~Q~la~~~Gg~v~~~~~  118 (126)
                      ||+|||+|+.++||++.+.++
T Consensus        78 IC~G~Qlla~~~GG~v~~~~~   98 (191)
T PRK06774         78 VCLGHQALGQAFGARVVRARQ   98 (191)
T ss_pred             ECHHHHHHHHHhCCEEEeCCc
Confidence            999999999999999998653

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=99.82  E-value=1.8e-20  Score=136.42  Aligned_cols=93  Identities=17%  Similarity=0.216  Sum_probs=70.7

Q ss_pred             HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165           20 KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC   99 (126)
Q Consensus        20 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC   99 (126)
                      +|||+|++++.++|++.|.++.+++......... ...++|+||++|||.++++...    ..+.++. ++.++|+||||
T Consensus         6 dn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~-~~~~~d~iIlsgGP~~p~~~~~----~~~~i~~-~~~~~PvLGIC   79 (195)
T PRK07649          6 DNYDSFTFNLVQFLGELGQELVVKRNDEVTISDI-ENMKPDFLMISPGPCSPNEAGI----SMEVIRY-FAGKIPIFGVC   79 (195)
T ss_pred             eCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH-hhCCCCEEEECCCCCChHhCCC----chHHHHH-hcCCCCEEEEc
Confidence            4577999999999999999999988543211110 1246999999999999876433    2334443 34689999999


Q ss_pred             hHHHHHHHHhCCccccCCc
Q 033165          100 FGHQVRAITVFSSHINASK  118 (126)
Q Consensus       100 ~G~Q~la~~~Gg~v~~~~~  118 (126)
                      +|||+|++++||+|.+.++
T Consensus        80 lG~Qlla~~lGg~V~~~~~   98 (195)
T PRK07649         80 LGHQSIAQVFGGEVVRAER   98 (195)
T ss_pred             HHHHHHHHHcCCEEeeCCC
Confidence            9999999999999998653

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=99.82  E-value=5.2e-21  Score=137.68  Aligned_cols=93  Identities=28%  Similarity=0.436  Sum_probs=77.8

Q ss_pred             HhhCCHHHHHHHHHhhCCCeEEEEEccCCCC-CCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165           20 KKYGGYFGVFVRMLAEEGETWDVFHVARGEF-PDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGI   98 (126)
Q Consensus        20 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI   98 (126)
                      |+|++|+.++.+.+++.+.+++++++..... +.. ++.+||+|||+||+.++++    +..+.++++++.+.++|+|||
T Consensus         4 D~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~d~iii~Gg~~~~~d----~~~~~~~i~~~~~~~~PilGI   78 (192)
T PF00117_consen    4 DNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLE-DLDDYDGIIISGGPGSPYD----IEGLIELIREARERKIPILGI   78 (192)
T ss_dssp             ESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHH-HTTTSSEEEEECESSSTTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred             eCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhh-hhcCCCEEEECCcCCcccc----ccccccccccccccceEEEEE
Confidence            3466899999999999999999999764211 100 3689999999999999876    567788889988889999999


Q ss_pred             chHHHHHHHHhCCccccCC
Q 033165           99 CFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        99 C~G~Q~la~~~Gg~v~~~~  117 (126)
                      |+|||+|++++|+++.+.+
T Consensus        79 C~G~Q~la~~~G~~v~~~~   97 (192)
T PF00117_consen   79 CLGHQILAHALGGKVVPSP   97 (192)
T ss_dssp             THHHHHHHHHTTHEEEEEE
T ss_pred             eehhhhhHHhcCCcccccc
Confidence            9999999999999998754

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=99.81  E-value=4.8e-20  Score=133.72  Aligned_cols=93  Identities=15%  Similarity=0.195  Sum_probs=72.2

Q ss_pred             HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165           20 KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC   99 (126)
Q Consensus        20 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC   99 (126)
                      |+||||++++.++|++.|.++++++....+++.... .++|++|++|||.+++++..+    .++++. ++.++|+||||
T Consensus         6 d~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-~~~~~iilsgGp~~~~~~~~~----~~~i~~-~~~~~PiLGIC   79 (193)
T PRK08857          6 DNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEA-LNPTHLVISPGPCTPNEAGIS----LQAIEH-FAGKLPILGVC   79 (193)
T ss_pred             ECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhh-CCCCEEEEeCCCCChHHCcch----HHHHHH-hcCCCCEEEEc
Confidence            357789999999999999999999875332211112 358999999999998765433    345554 46789999999


Q ss_pred             hHHHHHHHHhCCccccCCc
Q 033165          100 FGHQVRAITVFSSHINASK  118 (126)
Q Consensus       100 ~G~Q~la~~~Gg~v~~~~~  118 (126)
                      +|||+|+.++||++.+.++
T Consensus        80 lG~Qlia~a~Gg~v~~~~~   98 (193)
T PRK08857         80 LGHQAIAQVFGGQVVRARQ   98 (193)
T ss_pred             HHHHHHHHHhCCEEEeCCC
Confidence            9999999999999998654

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=99.81  E-value=1.4e-19  Score=133.48  Aligned_cols=101  Identities=16%  Similarity=0.269  Sum_probs=78.8

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-CCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-DDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      |||+|+++.          ++|+.++.++|.+.|.++.+++......+.. +.+.++|||||+|||.++.+.    ....
T Consensus         1 ~~ilv~d~~----------~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~----~~~~   66 (214)
T PRK07765          1 MRILVVDNY----------DSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERA----GASI   66 (214)
T ss_pred             CeEEEEECC----------CcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhc----chHH
Confidence            578888775          3578889999999999999988654221111 124579999999999876432    3345


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCc
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASK  118 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~  118 (126)
                      ++++++.+.++|+||||+|||+|+.++||++.+.++
T Consensus        67 ~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~  102 (214)
T PRK07765         67 DMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPE  102 (214)
T ss_pred             HHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCC
Confidence            788888888999999999999999999999997643

>PRK05637 anthranilate synthase component II; Provisional

Probab=99.81  E-value=1.1e-19  Score=133.60  Aligned_cols=97  Identities=15%  Similarity=0.169  Sum_probs=74.4

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCchHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGNDVWICK   80 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~~~~~~   80 (126)
                      |.||+|+++          +++|++++.++|++.|..+++++...   +. +++  .++|+|||+|||.++++..    .
T Consensus         1 ~~~il~iD~----------~dsf~~nl~~~l~~~g~~~~v~~~~~---~~-~~l~~~~~~~iIlsgGPg~~~d~~----~   62 (208)
T PRK05637          1 MTHVVLIDN----------HDSFVYNLVDAFAVAGYKCTVFRNTV---PV-EEILAANPDLICLSPGPGHPRDAG----N   62 (208)
T ss_pred             CCEEEEEEC----------CcCHHHHHHHHHHHCCCcEEEEeCCC---CH-HHHHhcCCCEEEEeCCCCCHHHhh----H
Confidence            568999965          45799999999999999999887532   11 122  3789999999999886532    2


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCc
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASK  118 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~  118 (126)
                      ..++++.+. .++|+||||+|||+|+.++||++.+...
T Consensus        63 ~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~~~   99 (208)
T PRK05637         63 MMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPCGP   99 (208)
T ss_pred             HHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccCCc
Confidence            345565443 5799999999999999999999986543

>PRK05670 anthranilate synthase component II; Provisional

Probab=99.81  E-value=1e-19  Score=131.49  Aligned_cols=97  Identities=15%  Similarity=0.241  Sum_probs=73.8

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHH
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALL   85 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i   85 (126)
                      |+|+++.          ++|++++.++|++.|.++++++....+....+.+ ++|+||++|||.++++..    ...+++
T Consensus         2 iliid~~----------d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~-~~dglIlsgGpg~~~d~~----~~~~~l   66 (189)
T PRK05670          2 ILLIDNY----------DSFTYNLVQYLGELGAEVVVYRNDEITLEEIEAL-NPDAIVLSPGPGTPAEAG----ISLELI   66 (189)
T ss_pred             EEEEECC----------CchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhC-CCCEEEEcCCCCChHHcc----hHHHHH
Confidence            7788664          5799999999999999999998653221111223 489999999998885532    234466


Q ss_pred             HHHHhcCCcEEEEchHHHHHHHHhCCccccCCc
Q 033165           86 KQLDSLRKKVLGICFGHQVRAITVFSSHINASK  118 (126)
Q Consensus        86 ~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~  118 (126)
                      +++ +.++|+||||+|||+|+.++||++.+.++
T Consensus        67 ~~~-~~~~PvLGIClG~Qlla~alGg~v~~~~~   98 (189)
T PRK05670         67 REF-AGKVPILGVCLGHQAIGEAFGGKVVRAKE   98 (189)
T ss_pred             HHh-cCCCCEEEECHHHHHHHHHhCCEEEecCC
Confidence            653 56799999999999999999999997654

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=99.81  E-value=7.3e-20  Score=132.38  Aligned_cols=93  Identities=15%  Similarity=0.164  Sum_probs=70.4

Q ss_pred             HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165           20 KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC   99 (126)
Q Consensus        20 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC   99 (126)
                      |+||||++++.++|++.|.++.+++.....+...+. .++|+|||+|||.++.+..    ...++++++ +.++|+||||
T Consensus         6 d~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~d~iilsgGpg~p~~~~----~~~~~i~~~-~~~~PvLGIC   79 (188)
T TIGR00566         6 DNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA-LLPLLIVISPGPCTPNEAG----ISLEAIRHF-AGKLPILGVC   79 (188)
T ss_pred             ECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh-cCCCEEEEcCCCCChhhcc----hhHHHHHHh-ccCCCEEEEC
Confidence            357799999999999999998877743211111111 2589999999999885432    235667776 5789999999


Q ss_pred             hHHHHHHHHhCCccccCCc
Q 033165          100 FGHQVRAITVFSSHINASK  118 (126)
Q Consensus       100 ~G~Q~la~~~Gg~v~~~~~  118 (126)
                      +|||+|+.++||++.+.++
T Consensus        80 ~G~Qll~~~~GG~v~~~~~   98 (188)
T TIGR00566        80 LGHQAMGQAFGGDVVRANT   98 (188)
T ss_pred             HHHHHHHHHcCCEEeeCCC
Confidence            9999999999999997653

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>CHL00101 trpG anthranilate synthase component 2

Probab=99.80  E-value=7.7e-20  Score=132.39  Aligned_cols=92  Identities=16%  Similarity=0.162  Sum_probs=69.0

Q ss_pred             hhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165           21 KYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF  100 (126)
Q Consensus        21 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~  100 (126)
                      ++++|++++.++|++.|.++.+++....+.... ...++|+|||+|||.++.+..    ...+++ +.++.++|+||||+
T Consensus         7 ~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~-~~~~~dgiiisgGpg~~~~~~----~~~~i~-~~~~~~~PiLGICl   80 (190)
T CHL00101          7 NYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKI-KNLNIRHIIISPGPGHPRDSG----ISLDVI-SSYAPYIPILGVCL   80 (190)
T ss_pred             CCCchHHHHHHHHHhcCCCEEEEECCCCCHHHH-hhCCCCEEEECCCCCChHHCc----chHHHH-HHhcCCCcEEEEch
Confidence            456899999999999999998887543221111 124699999999998875432    122333 34567999999999


Q ss_pred             HHHHHHHHhCCccccCCc
Q 033165          101 GHQVRAITVFSSHINASK  118 (126)
Q Consensus       101 G~Q~la~~~Gg~v~~~~~  118 (126)
                      |||+|+.++||+|.+.++
T Consensus        81 G~Qlla~~~Gg~V~~~~~   98 (190)
T CHL00101         81 GHQSIGYLFGGKIIKAPK   98 (190)
T ss_pred             hHHHHHHHhCCEEEECCC
Confidence            999999999999998654

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=99.80  E-value=2.6e-19  Score=128.65  Aligned_cols=92  Identities=18%  Similarity=0.210  Sum_probs=71.2

Q ss_pred             HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165           20 KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC   99 (126)
Q Consensus        20 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC   99 (126)
                      +++++|+.++.++|++.|.++++++..... +.+.++.++||||++||+.++.++.     ..+.+++.+++++|+||||
T Consensus         5 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~~dgvil~gG~~~~~~~~-----~~~~i~~~~~~~~PvlGIC   78 (184)
T cd01743           5 DNYDSFTYNLVQYLRELGAEVVVVRNDEIT-LEELELLNPDAIVISPGPGHPEDAG-----ISLEIIRALAGKVPILGVC   78 (184)
T ss_pred             eCCCccHHHHHHHHHHcCCceEEEeCCCCC-HHHHhhcCCCEEEECCCCCCcccch-----hHHHHHHHHhcCCCEEEEC
Confidence            356789999999999999999999875432 1111457899999999998875542     2233444456789999999


Q ss_pred             hHHHHHHHHhCCccccCC
Q 033165          100 FGHQVRAITVFSSHINAS  117 (126)
Q Consensus       100 ~G~Q~la~~~Gg~v~~~~  117 (126)
                      +|||+|++++||++.+.+
T Consensus        79 ~G~Qlla~~~Gg~v~~~~   96 (184)
T cd01743          79 LGHQAIAEAFGGKVVRAP   96 (184)
T ss_pred             HhHHHHHHHhCCEEEeCC
Confidence            999999999999999765

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PLN02335 anthranilate synthase

Probab=99.78  E-value=9.1e-19  Score=129.74  Aligned_cols=98  Identities=11%  Similarity=0.166  Sum_probs=73.0

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      +||+|+++          +++|++++.++|++.|.++++++....+.... ...++|+|||+|||+++++...    ..+
T Consensus        19 ~~ilviD~----------~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~-~~~~~d~iVisgGPg~p~d~~~----~~~   83 (222)
T PLN02335         19 GPIIVIDN----------YDSFTYNLCQYMGELGCHFEVYRNDELTVEEL-KRKNPRGVLISPGPGTPQDSGI----SLQ   83 (222)
T ss_pred             CcEEEEEC----------CCCHHHHHHHHHHHCCCcEEEEECCCCCHHHH-HhcCCCEEEEcCCCCChhhccc----hHH
Confidence            57788744          56899999999999999999998532111111 1236899999999999976432    123


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      .+++ ...++|+||||+|||+|+.++||++.+.+
T Consensus        84 ~~~~-~~~~~PiLGIClG~QlLa~alGg~v~~~~  116 (222)
T PLN02335         84 TVLE-LGPLVPLFGVCMGLQCIGEAFGGKIVRSP  116 (222)
T ss_pred             HHHH-hCCCCCEEEecHHHHHHHHHhCCEEEeCC
Confidence            3333 34579999999999999999999998764

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=99.76  E-value=3.5e-18  Score=122.13  Aligned_cols=91  Identities=19%  Similarity=0.249  Sum_probs=68.3

Q ss_pred             CHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-hHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165           24 GYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-VWICKLIALLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        24 ~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-~~~~~~~~~i~~~~~~~~PvlGIC~G~  102 (126)
                      +|+..+.++|++.|.++.+++..... + ..++.++|+||++||+.+++++. +|.      .+++.+.++|+||||+||
T Consensus         9 ~~~~~~~~~l~~~G~~~~~~~~~~~~-~-~~~~~~~dgvIl~Gg~~~~~~~~~~~~------~~~~~~~~~PilGIC~G~   80 (181)
T cd01742           9 QYTHLIARRVRELGVYSEILPNTTPL-E-EIKLKNPKGIILSGGPSSVYEEDAPRV------DPEIFELGVPVLGICYGM   80 (181)
T ss_pred             chHHHHHHHHHhcCceEEEecCCCCh-h-hhcccCCCEEEECCCcccccccccchh------hHHHHhcCCCEEEEcHHH
Confidence            46778899999999999888764321 1 12568899999999998877642 332      234445699999999999


Q ss_pred             HHHHHHhCCccccCC-ccccc
Q 033165          103 QVRAITVFSSHINAS-KIAGT  122 (126)
Q Consensus       103 Q~la~~~Gg~v~~~~-~~~g~  122 (126)
                      |+|++++||++.+.+ ..+|+
T Consensus        81 Qll~~~~gg~v~~~~~~~~G~  101 (181)
T cd01742          81 QLIAKALGGKVERGDKREYGK  101 (181)
T ss_pred             HHHHHhcCCeEEeCCCCcceE
Confidence            999999999998754 34443

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.76  E-value=2.6e-18  Score=125.21  Aligned_cols=97  Identities=26%  Similarity=0.278  Sum_probs=77.1

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      |||+||-....+.       +|...+.++++..|.+++++.+..   +  +++.+||+|||+||+.+++++..|...+.+
T Consensus         1 ~~i~vl~~~~~~~-------e~~~~~~~~l~~~g~~~~~~~~~~---~--~~l~~~d~iii~GG~~~~~~~~~~~~~~~~   68 (200)
T PRK13527          1 MKIGVLALQGDVE-------EHIDALKRALDELGIDGEVVEVRR---P--GDLPDCDALIIPGGESTTIGRLMKREGILD   68 (200)
T ss_pred             CEEEEEEECCccH-------HHHHHHHHHHHhcCCCeEEEEeCC---h--HHhccCCEEEECCCcHHHHHHHHhhccHHH
Confidence            3777777666543       466778899999999888887642   2  256789999999998766544456666788


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHHhCCc
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAITVFSS  112 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~  112 (126)
                      +|+++++.++|+||||+|+|+|++++|++
T Consensus        69 ~i~~~~~~~~pilGIC~G~Qll~~~~gg~   97 (200)
T PRK13527         69 EIKEKIEEGLPILGTCAGLILLAKEVGDD   97 (200)
T ss_pred             HHHHHHHCCCeEEEECHHHHHHHhhhcCC
Confidence            99999889999999999999999999984

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.75  E-value=5.8e-18  Score=138.88  Aligned_cols=99  Identities=15%  Similarity=0.138  Sum_probs=74.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CCCC--CCcCEEEEcCCCCCCCCCchH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DDDF--GSYDGYVITGSCNDAHGNDVW   77 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~~~--~~~d~iii~G~~~~~~~~~~~   77 (126)
                      |+||+|++          +||+|++++.++|++.|.++.+++..   .|.   .+++  .++|+|||+|||.++.|. .+
T Consensus         1 ~~~iLiID----------n~dsft~nl~~~lr~~g~~v~V~~~~---~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~-~~   66 (531)
T PRK09522          1 MADILLLD----------NIDSFTYNLADQLRSNGHNVVIYRNH---IPAQTLIERLATMSNPVLMLSPGPGVPSEA-GC   66 (531)
T ss_pred             CCeEEEEe----------CCChHHHHHHHHHHHCCCCEEEEECC---CCCccCHHHHHhcCcCEEEEcCCCCChhhC-CC
Confidence            46899995          46789999999999999999988732   221   1122  357899999999998653 22


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCcc
Q 033165           78 ICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKI  119 (126)
Q Consensus        78 ~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~~  119 (126)
                      ..   ++++. ++.++|+||||+|||+|+.++||+|.+.+++
T Consensus        67 ~~---~i~~~-~~~~iPILGIClG~QlLa~a~GG~V~~~~~~  104 (531)
T PRK09522         67 MP---ELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQAGEI  104 (531)
T ss_pred             CH---HHHHH-HhcCCCEEEEcHHHHHHHHhcCCEEEeCCce
Confidence            22   22332 3458999999999999999999999976544

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=99.75  E-value=8e-18  Score=121.34  Aligned_cols=93  Identities=20%  Similarity=0.239  Sum_probs=71.2

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCC--cCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGS--YDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~--~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      |+|++++.          +|+.++.++|++.|.++++++....  +  +++.+  +|+|||+||+.+++++.     ..+
T Consensus         1 i~iiD~g~----------~~~~~l~~~l~~~g~~~~~~~~~~~--~--~~~~~~~~~glii~Gg~~~~~~~~-----~~~   61 (188)
T TIGR00888         1 ILVLDFGS----------QYTQLIARRLRELGVYSELVPNTTP--L--EEIREKNPKGIILSGGPSSVYAEN-----APR   61 (188)
T ss_pred             CEEEECCc----------hHHHHHHHHHHHcCCEEEEEeCCCC--H--HHHhhcCCCEEEECCCCCCcCcCC-----chH
Confidence            45666654          4788899999999999988876432  1  12333  55999999998887643     234


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      +++.+++.++|+||||+|||+|+.++||++.+.+
T Consensus        62 ~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~   95 (188)
T TIGR00888        62 ADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAE   95 (188)
T ss_pred             HHHHHHhCCCCEEEECHHHHHHHHhcCceEecCC
Confidence            5677778899999999999999999999998654

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PRK00758 GMP synthase subunit A; Validated

Probab=99.75  E-value=6.6e-18  Score=121.42  Aligned_cols=90  Identities=22%  Similarity=0.303  Sum_probs=68.3

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCc-CEEEEcCCCCCCCCCchHHHHHHHH
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSY-DGYVITGSCNDAHGNDVWICKLIAL   84 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~-d~iii~G~~~~~~~~~~~~~~~~~~   84 (126)
                      |+|+++..          +|++++.++|++.|.++.+++...   + ++++.++ |+||++||+.     .+|...+.++
T Consensus         2 i~iid~~~----------~~~~~i~~~l~~~g~~~~~~~~~~---~-~~~l~~~~dgivi~Gg~~-----~~~~~~~~~~   62 (184)
T PRK00758          2 IVVVDNGG----------QYNHLIHRTLRYLGVDAKIIPNTT---P-VEEIKAFEDGLILSGGPD-----IERAGNCPEY   62 (184)
T ss_pred             EEEEECCC----------chHHHHHHHHHHcCCcEEEEECCC---C-HHHHhhcCCEEEECCCCC-----hhhccccHHH
Confidence            77776544          578899999999999988877432   2 1246677 9999999982     2344444455


Q ss_pred             HHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           85 LKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        85 i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      ++   +.++|+||||+|||+|++++||++.+.+
T Consensus        63 l~---~~~~PilGIC~G~Q~L~~a~Gg~v~~~~   92 (184)
T PRK00758         63 LK---ELDVPILGICLGHQLIAKAFGGEVGRGE   92 (184)
T ss_pred             HH---hCCCCEEEEeHHHHHHHHhcCcEEecCC
Confidence            54   4589999999999999999999998764

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=99.74  E-value=8.1e-18  Score=144.02  Aligned_cols=104  Identities=17%  Similarity=0.175  Sum_probs=76.2

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-CCeEEEEEccCCCCCCCC----CCCCcCEEEEcCCCCCCCCCchHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-GETWDVFHVARGEFPDDD----DFGSYDGYVITGSCNDAHGNDVWI   78 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~p~~~----~~~~~d~iii~G~~~~~~~~~~~~   78 (126)
                      +||++|          ||||||++++.++|++. |.++.+++.++-.+....    .+..+|+|||+|||.++.. ...+
T Consensus        82 ~~iLlI----------DnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~-~~d~  150 (918)
T PLN02889         82 VRTLLI----------DNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTC-PADI  150 (918)
T ss_pred             ceEEEE----------eCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccc-hHHH
Confidence            578888          46899999999999887 888888775421111110    1357999999999987743 2223


Q ss_pred             HHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCccc
Q 033165           79 CKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKIA  120 (126)
Q Consensus        79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~~~  120 (126)
                      ....++|++.  .++||||||+|||+|+.++||+|.+++++.
T Consensus       151 Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~~~~  190 (918)
T PLN02889        151 GICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAPEPV  190 (918)
T ss_pred             HHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCCCce
Confidence            3345556543  479999999999999999999999876543

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=99.72  E-value=4.1e-17  Score=116.91  Aligned_cols=84  Identities=19%  Similarity=0.229  Sum_probs=65.7

Q ss_pred             HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHH
Q 033165           28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAI  107 (126)
Q Consensus        28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~  107 (126)
                      ++.+++++.|..+.+++.... ... ....++|+||++||+.++.+    .....++++++.+.++|+||||+|+|+|+.
T Consensus        11 ~~~~~l~~~G~~~~~~~~~~~-~~~-~~~~~~dgiil~GG~~~~~~----~~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~   84 (178)
T cd01744          11 NILRELLKRGCEVTVVPYNTD-AEE-ILKLDPDGIFLSNGPGDPAL----LDEAIKTVRKLLGKKIPIFGICLGHQLLAL   84 (178)
T ss_pred             HHHHHHHHCCCeEEEEECCCC-HHH-HhhcCCCEEEECCCCCChhH----hHHHHHHHHHHHhCCCCEEEECHHHHHHHH
Confidence            468889899999998876432 111 12357999999999876533    245677889988889999999999999999


Q ss_pred             HhCCccccCC
Q 033165          108 TVFSSHINAS  117 (126)
Q Consensus       108 ~~Gg~v~~~~  117 (126)
                      ++||++.+.+
T Consensus        85 ~~Gg~v~~~~   94 (178)
T cd01744          85 ALGAKTYKMK   94 (178)
T ss_pred             HcCCceecCC
Confidence            9999998643

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>PLN02347 GMP synthetase

Probab=99.71  E-value=6.7e-17  Score=132.68  Aligned_cols=104  Identities=15%  Similarity=0.153  Sum_probs=78.0

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC--CcCEEEEcCCCCCCCCC-chHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG--SYDGYVITGSCNDAHGN-DVWICK   80 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~--~~d~iii~G~~~~~~~~-~~~~~~   80 (126)
                      .||+||+++.          +|++++.+.+++.|..++++.....    .+++.  ++||||+||||.+++++ .+|+..
T Consensus        11 ~~IlIID~G~----------~~t~~I~r~lrelgv~~~v~p~~~~----~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~   76 (536)
T PLN02347         11 DVVLILDYGS----------QYTHLITRRVRELGVYSLLLSGTAS----LDRIASLNPRVVILSGGPHSVHVEGAPTVPE   76 (536)
T ss_pred             CEEEEEECCC----------cHHHHHHHHHHHCCCeEEEEECCCC----HHHHhcCCCCEEEECCCCCcccccCCchhhH
Confidence            4799998766          4788899999999998887764321    12232  68999999999998764 355543


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-cccccc
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGTA  123 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~~  123 (126)
                        .+++.+.+.++|+||||+|||+|++++||+|.+.+ ..+|+.
T Consensus        77 --~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~~~e~G~~  118 (536)
T PLN02347         77 --GFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGEKQEYGRM  118 (536)
T ss_pred             --HHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecCCcccceE
Confidence              34444455789999999999999999999998754 346653

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=99.71  E-value=6.4e-17  Score=137.00  Aligned_cols=102  Identities=15%  Similarity=0.144  Sum_probs=71.5

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-C--CeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-G--ETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVW   77 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-g--~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~   77 (126)
                      +.++||+||++          ||+|++++.++|++. +  .++.+++...........+..||+|||+|||+++.+.. .
T Consensus         3 ~~~~~iL~ID~----------~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~-~   71 (742)
T TIGR01823         3 QQRLHVLFIDS----------YDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQ-D   71 (742)
T ss_pred             CCCceEEEEeC----------CcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchh-h
Confidence            34689999955          668999999999875 3  45666664321110111356899999999999875422 1


Q ss_pred             HHHHHHHHHHHHh----cCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           78 ICKLIALLKQLDS----LRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        78 ~~~~~~~i~~~~~----~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                          ..+++++.+    .++|+||||+|||+|+.++||++.+.+
T Consensus        72 ----~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~  111 (742)
T TIGR01823        72 ----MGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLP  111 (742)
T ss_pred             ----hHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECC
Confidence                122333332    359999999999999999999999865

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=99.70  E-value=4.2e-16  Score=119.96  Aligned_cols=112  Identities=18%  Similarity=0.244  Sum_probs=81.4

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe--EEEEEccCCCC---C---------CCC--CCCCcCEEEEcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET--WDVFHVARGEF---P---------DDD--DFGSYDGYVITG   66 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~~~---p---------~~~--~~~~~d~iii~G   66 (126)
                      .+||+||+..+....++.       .|.++|.....+  ++.+++..-..   +         ..+  .-.+|||+||+|
T Consensus        35 pl~i~ilNlMp~k~~TE~-------q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITG  107 (302)
T PRK05368         35 PLKILILNLMPKKIETET-------QFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITG  107 (302)
T ss_pred             CccEEEEeCCCCCchHHH-------HHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcC
Confidence            479999999999875544       477777665445  45554432100   0         000  126899999999


Q ss_pred             CCCC--CCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCc--cccCCcccc
Q 033165           67 SCND--AHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSS--HINASKIAG  121 (126)
Q Consensus        67 ~~~~--~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~--v~~~~~~~g  121 (126)
                      +|.+  ++++.+|..++.++++.+.+..+|+||||||||+++.++||.  ....+|.+|
T Consensus       108 Ap~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~G  166 (302)
T PRK05368        108 APVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSG  166 (302)
T ss_pred             CCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeE
Confidence            9988  788888777777777777777899999999999999999994  444567777

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.69  E-value=8.2e-17  Score=116.59  Aligned_cols=91  Identities=20%  Similarity=0.224  Sum_probs=70.4

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      ||||+|+.....          |.+++ ++|+..|.++..++.     +  +++++||+||++||+.+.++...|...+.
T Consensus         1 ~m~~~i~~~~g~----------~~~~~-~~l~~~g~~~~~~~~-----~--~~l~~~dgiii~GG~~~~~~~~~~~~~~~   62 (189)
T PRK13525          1 MMKIGVLALQGA----------VREHL-AALEALGAEAVEVRR-----P--EDLDEIDGLILPGGESTTMGKLLRDFGLL   62 (189)
T ss_pred             CCEEEEEEcccC----------HHHHH-HHHHHCCCEEEEeCC-----h--hHhccCCEEEECCCChHHHHHHHHhccHH
Confidence            468888877654          33333 567778887776652     2  35778999999999876554445566677


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCC
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFS  111 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg  111 (126)
                      ++++++.++++|++|||+|+|+|++++|+
T Consensus        63 ~~i~~~~~~g~PilGIC~G~QlL~~~~gg   91 (189)
T PRK13525         63 EPLREFIASGLPVFGTCAGMILLAKEIEG   91 (189)
T ss_pred             HHHHHHHHCCCeEEEECHHHHHHHhhccc
Confidence            88999999999999999999999999998

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=99.69  E-value=1.6e-16  Score=134.07  Aligned_cols=97  Identities=11%  Similarity=0.114  Sum_probs=77.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-CCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-EFPDDDDFGSYDGYVITGSCNDAHGNDVWICKL   81 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~   81 (126)
                      .+||+|++++.          +|.+++.++|++.|.++++++.... +++   +..++|+|||+|||+++.+.     .+
T Consensus       516 ~~~IlVID~gd----------s~~~~l~~~L~~~G~~v~vv~~~~~~~~~---~~~~~DgLILsgGPGsp~d~-----~~  577 (717)
T TIGR01815       516 GRRILLVDHED----------SFVHTLANYLRQTGASVTTLRHSHAEAAF---DERRPDLVVLSPGPGRPADF-----DV  577 (717)
T ss_pred             CCEEEEEECCC----------hhHHHHHHHHHHCCCeEEEEECCCChhhh---hhcCCCEEEEcCCCCCchhc-----cc
Confidence            57999998864          4677899999999999988875422 122   23579999999999987652     24


Q ss_pred             HHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           82 IALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      .++|+++++.++|+||||+|||+|++++||++.+.+
T Consensus       578 ~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~  613 (717)
T TIGR01815       578 AGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLP  613 (717)
T ss_pred             HHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECC
Confidence            567778888899999999999999999999998764

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK13566 anthranilate synthase; Provisional

Probab=99.68  E-value=2.2e-16  Score=133.33  Aligned_cols=97  Identities=12%  Similarity=0.123  Sum_probs=78.7

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-CCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-EFPDDDDFGSYDGYVITGSCNDAHGNDVWICKL   81 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~   81 (126)
                      .+||+|++++.          +|.+.+.++|++.|.++.+++.... +.+   +..++|+|||+|||.++.+.     .+
T Consensus       526 g~~IlvID~~d----------sf~~~l~~~Lr~~G~~v~vv~~~~~~~~~---~~~~~DgVVLsgGpgsp~d~-----~~  587 (720)
T PRK13566        526 GKRVLLVDHED----------SFVHTLANYFRQTGAEVTTVRYGFAEEML---DRVNPDLVVLSPGPGRPSDF-----DC  587 (720)
T ss_pred             CCEEEEEECCC----------chHHHHHHHHHHCCCEEEEEECCCChhHh---hhcCCCEEEECCCCCChhhC-----Cc
Confidence            37999999874          4677899999999999999987532 122   23579999999999876442     35


Q ss_pred             HHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           82 IALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      .++++.++++++|+||||+|||+|+.++||++.+.+
T Consensus       588 ~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~  623 (720)
T PRK13566        588 KATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLA  623 (720)
T ss_pred             HHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECC
Confidence            678888888999999999999999999999998754

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.68  E-value=9.3e-17  Score=116.19  Aligned_cols=108  Identities=17%  Similarity=0.138  Sum_probs=72.9

Q ss_pred             EEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCC---C--chH----
Q 033165            8 VLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHG---N--DVW----   77 (126)
Q Consensus         8 Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~---~--~~~----   77 (126)
                      |..+........+.+++++..+.++|+..|....++..... ... ...+..+|+||++||+....+   +  .+|    
T Consensus         3 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~iv~~~~~-~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~   81 (189)
T cd01745           3 ITARLREEEGGYERRDYLNQYYVDAVRKAGGLPVLLPPVDD-EEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPI   81 (189)
T ss_pred             EcCccccccCccHHHHHHHHHHHHHHHHCCCEEEEeCCCCC-hHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCC
Confidence            33343333333333567888899999999988777653321 100 113478999999999864321   0  011    


Q ss_pred             ----HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165           78 ----ICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA  116 (126)
Q Consensus        78 ----~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~  116 (126)
                          .....++++.+.+.++|+||||+|+|+|+.++||++.+.
T Consensus        82 ~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~  124 (189)
T cd01745          82 DPERDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQD  124 (189)
T ss_pred             ChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcC
Confidence                123467888888889999999999999999999999764

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK00074 guaA GMP synthase; Reviewed

Probab=99.68  E-value=1.7e-16  Score=129.81  Aligned_cols=102  Identities=19%  Similarity=0.240  Sum_probs=77.2

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC--CcCEEEEcCCCCCCCCCc-hH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG--SYDGYVITGSCNDAHGND-VW   77 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~--~~d~iii~G~~~~~~~~~-~~   77 (126)
                      |.+.+|+||+++.          .|+..+.+.+++.|...+++.....    .+++.  ++|||||+||+.++++.. ++
T Consensus         1 ~~~~~i~vlD~Gs----------q~~~li~r~lrelg~~~~v~p~~~~----~~~l~~~~~dgIIlsGGp~sv~~~~~p~   66 (511)
T PRK00074          1 IHHDKILILDFGS----------QYTQLIARRVRELGVYSEIVPYDIS----AEEIRAFNPKGIILSGGPASVYEEGAPR   66 (511)
T ss_pred             CCCCEEEEEECCC----------CcHHHHHHHHHHCCCeEEEEECCCC----HHHHhccCCCEEEECCCCcccccCCCcc
Confidence            5677899999865          4788899999999998888864321    12333  459999999999887643 44


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165           78 ICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT  122 (126)
Q Consensus        78 ~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~  122 (126)
                      +.      +.+++.++|+||||+|||+|++++||++.+.. ...|+
T Consensus        67 ~~------~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~~~~e~G~  106 (511)
T PRK00074         67 AD------PEIFELGVPVLGICYGMQLMAHQLGGKVERAGKREYGR  106 (511)
T ss_pred             cc------HHHHhCCCCEEEECHHHHHHHHHhCCeEEecCCcccce
Confidence            32      23456799999999999999999999998764 34453

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=99.67  E-value=3.3e-16  Score=123.96  Aligned_cols=97  Identities=20%  Similarity=0.202  Sum_probs=71.1

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      .+||+|++++.            .+++.++|++.|.++.+++.... .... ...++|+|||+|||.++.+.    ....
T Consensus       192 ~~~I~viD~g~------------k~ni~~~L~~~G~~v~vvp~~~~-~~~i-~~~~~dgIilSgGPg~p~~~----~~~i  253 (382)
T CHL00197        192 QLKIIVIDFGV------------KYNILRRLKSFGCSITVVPATSP-YQDI-LSYQPDGILLSNGPGDPSAI----HYGI  253 (382)
T ss_pred             CCEEEEEECCc------------HHHHHHHHHHCCCeEEEEcCCCC-HHHH-hccCCCEEEEcCCCCChhHH----HHHH
Confidence            36899998843            34688899999999988864321 1111 12379999999999877432    2334


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      +.++++++.++|+||||+|||+|+.++||++.+.+
T Consensus       254 ~~i~~~~~~~~PilGIClGhQlLa~a~Gg~v~k~~  288 (382)
T CHL00197        254 KTVKKLLKYNIPIFGICMGHQILSLALEAKTFKLK  288 (382)
T ss_pred             HHHHHHHhCCCCEEEEcHHHHHHHHHhCCEEeccC
Confidence            45566666789999999999999999999987643

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.66  E-value=1.4e-16  Score=130.93  Aligned_cols=93  Identities=15%  Similarity=0.256  Sum_probs=68.7

Q ss_pred             HhhCCHHHHHHHHHhhCCCe-EEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165           20 KKYGGYFGVFVRMLAEEGET-WDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGI   98 (126)
Q Consensus        20 ~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI   98 (126)
                      ||||+|++++.++|++.|.+ +.++++..-++... ...++|+||++|||.++.++..    ..++++.+ +.++|+|||
T Consensus         6 dn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~-~~~~~d~vIlsgGP~~p~~~~~----~~~li~~~-~~~~PvLGI   79 (534)
T PRK14607          6 DNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEI-EALNPSHIVISPGPGRPEEAGI----SVEVIRHF-SGKVPILGV   79 (534)
T ss_pred             ECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHH-HhcCCCEEEECCCCCChhhCCc----cHHHHHHh-hcCCCEEEE
Confidence            45789999999999999885 66665443221111 1236899999999998865431    23455553 568999999


Q ss_pred             chHHHHHHHHhCCccccCCc
Q 033165           99 CFGHQVRAITVFSSHINASK  118 (126)
Q Consensus        99 C~G~Q~la~~~Gg~v~~~~~  118 (126)
                      |+|||+|+.++||++.+.++
T Consensus        80 ClG~QlLa~a~Gg~V~~~~~   99 (534)
T PRK14607         80 CLGHQAIGYAFGGKIVHAKR   99 (534)
T ss_pred             cHHHHHHHHHcCCeEecCCc
Confidence            99999999999999987653

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.65  E-value=6e-16  Score=112.83  Aligned_cols=95  Identities=16%  Similarity=0.189  Sum_probs=74.4

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      ||++||+++..+          ...+.++|++.|.++.+++.     +  +++++||+||++|+.. ..+..+|+..+.+
T Consensus         1 ~~~~v~~~~~~~----------~~~~~~~l~~~G~~~~~~~~-----~--~~~~~~d~iii~G~~~-~~~~~~~~~~~~~   62 (200)
T PRK13143          1 MMIVIIDYGVGN----------LRSVSKALERAGAEVVITSD-----P--EEILDADGIVLPGVGA-FGAAMENLSPLRD   62 (200)
T ss_pred             CeEEEEECCCcc----------HHHHHHHHHHCCCeEEEECC-----H--HHHccCCEEEECCCCC-HHHHHHHHHHHHH
Confidence            699999998764          34578899999998887641     2  2467899999998632 1123478888889


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHH------------hCCccccC
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAIT------------VFSSHINA  116 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~------------~Gg~v~~~  116 (126)
                      .+++++++++|+||||+|+|+|+++            +|+++.+.
T Consensus        63 ~i~~~~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~  107 (200)
T PRK13143         63 VILEAARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRF  107 (200)
T ss_pred             HHHHHHHcCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEc
Confidence            9999999999999999999999986            67777653

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=99.64  E-value=1.4e-15  Score=113.66  Aligned_cols=103  Identities=15%  Similarity=0.214  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DDDFGSYDGYVITGSCNDAHGNDVWICKL   81 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~~~~~~d~iii~G~~~~~~~~~~~~~~~   81 (126)
                      ||+++--.   .+..++|+++.+.+.++..+.+.++.+..+.......   .+.+.++||||++||+....     ....
T Consensus         2 ~i~lvg~~---~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~~-----~~~~   73 (235)
T cd01746           2 RIALVGKY---VELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIRG-----VEGK   73 (235)
T ss_pred             EEEEEECC---cCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCcc-----hhhH
Confidence            56666332   3566789999999998887777777766544221111   13578899999999985432     2345


Q ss_pred             HHHHHHHHhcCCcEEEEchHHHHHHHHhCCcccc
Q 033165           82 IALLKQLDSLRKKVLGICFGHQVRAITVFSSHIN  115 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~  115 (126)
                      .++++.+.+.++|+||||+|+|+|+.++|+++.+
T Consensus        74 ~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~  107 (235)
T cd01746          74 ILAIKYARENNIPFLGICLGMQLAVIEFARNVLG  107 (235)
T ss_pred             HHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcC
Confidence            6678888889999999999999999999998864

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.64  E-value=9.4e-16  Score=120.69  Aligned_cols=96  Identities=20%  Similarity=0.251  Sum_probs=72.8

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      +||+|++++..            .++.++|.+.|..+.++..... ...... .++|||||+|||.++.+    .....+
T Consensus       178 ~~I~viD~G~k------------~nivr~L~~~G~~v~vvp~~~~-~~~i~~-~~~DGIvLSgGPgdp~~----~~~~~~  239 (360)
T PRK12564        178 YKVVAIDFGVK------------RNILRELAERGCRVTVVPATTT-AEEILA-LNPDGVFLSNGPGDPAA----LDYAIE  239 (360)
T ss_pred             CEEEEEeCCcH------------HHHHHHHHHCCCEEEEEeCCCC-HHHHHh-cCCCEEEEeCCCCChHH----HHHHHH
Confidence            68999998643            3477888889999988875421 111111 26999999999976633    245667


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      +++++.+.++|+||||+|||+|+.++||++.+.+
T Consensus       240 ~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~  273 (360)
T PRK12564        240 MIRELLEKKIPIFGICLGHQLLALALGAKTYKMK  273 (360)
T ss_pred             HHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccC
Confidence            8888888899999999999999999999988653

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=99.62  E-value=8.2e-16  Score=111.03  Aligned_cols=88  Identities=19%  Similarity=0.218  Sum_probs=66.4

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHH
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIAL   84 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~   84 (126)
                      ||+|+..+....          . ..++|++.|.++.+++.     +  ++++++|++|||||+.+..+...|...+.+.
T Consensus         1 ~igvl~~qg~~~----------e-~~~~l~~~g~~~~~v~~-----~--~~l~~~d~liipGG~~~~~~~l~~~~~l~~~   62 (184)
T TIGR03800         1 KIGVLALQGAVR----------E-HARALEALGVEGVEVKR-----P--EQLDEIDGLIIPGGESTTLSRLLDKYGMFEP   62 (184)
T ss_pred             CEEEEEccCCHH----------H-HHHHHHHCCCEEEEECC-----h--HHhccCCEEEECCCCHHHHHHHHHhccHHHH
Confidence            577777766543          2 23678889988887763     2  2467899999999976543333455567777


Q ss_pred             HHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165           85 LKQLDSLRKKVLGICFGHQVRAITVF  110 (126)
Q Consensus        85 i~~~~~~~~PvlGIC~G~Q~la~~~G  110 (126)
                      |+++++.++|++|||+|+|+|++++.
T Consensus        63 i~~~~~~g~pilGIC~G~qlL~~~~~   88 (184)
T TIGR03800        63 LRNFILSGLPVFGTCAGLIMLAKEII   88 (184)
T ss_pred             HHHHHHcCCcEEEECHHHHHHHhhhc
Confidence            88888899999999999999999983

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.62  E-value=2.2e-15  Score=118.39  Aligned_cols=96  Identities=24%  Similarity=0.330  Sum_probs=70.3

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      .+||++++++            +..++.++|.+.|.++.+++.... .+.. ...++|+|||+|||.++.+..    ...
T Consensus       167 ~~~V~viD~G------------~k~ni~~~L~~~G~~v~vvp~~~~-~~~i-~~~~~DGIiLsgGPgdp~~~~----~~~  228 (354)
T PRK12838        167 GKHVALIDFG------------YKKSILRSLSKRGCKVTVLPYDTS-LEEI-KNLNPDGIVLSNGPGDPKELQ----PYL  228 (354)
T ss_pred             CCEEEEECCC------------HHHHHHHHHHHCCCeEEEEECCCC-HHHH-hhcCCCEEEEcCCCCChHHhH----HHH
Confidence            3688898874            234678888889999998875421 1111 113799999999998775432    234


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      ++++++++. +|+||||+|||+|+.++||++.+.+
T Consensus       229 ~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~  262 (354)
T PRK12838        229 PEIKKLISS-YPILGICLGHQLIALALGADTEKLP  262 (354)
T ss_pred             HHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCC
Confidence            566776665 9999999999999999999998643

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=99.62  E-value=8.5e-16  Score=111.59  Aligned_cols=94  Identities=18%  Similarity=0.185  Sum_probs=70.6

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCC--chHHHHHHH
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGN--DVWICKLIA   83 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~--~~~~~~~~~   83 (126)
                      |+|++++..          +...+.++|++.|.++++++..       ++++++|+||++|+.... +.  ..|...+.+
T Consensus         1 i~i~d~g~~----------~~~~~~~~l~~~g~~v~v~~~~-------~~l~~~d~iiipG~~~~~-~~~~~~~~~~~~~   62 (198)
T cd01748           1 IAIIDYGMG----------NLRSVANALERLGAEVIITSDP-------EEILSADKLILPGVGAFG-DAMANLRERGLIE   62 (198)
T ss_pred             CEEEeCCCC----------hHHHHHHHHHHCCCeEEEEcCh-------HHhccCCEEEECCCCcHH-HHHHHHHHcChHH
Confidence            467777664          4566889999999999887721       246789999998864321 11  124445678


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHH------------hCCccccCC
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAIT------------VFSSHINAS  117 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~------------~Gg~v~~~~  117 (126)
                      +++++.++++|+||||+|+|+|+++            +++++.+.+
T Consensus        63 ~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~  108 (198)
T cd01748          63 ALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFP  108 (198)
T ss_pred             HHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEECC
Confidence            8998888899999999999999998            778888754

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.62  E-value=1e-15  Score=112.42  Aligned_cols=98  Identities=19%  Similarity=0.170  Sum_probs=67.3

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--   80 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--   80 (126)
                      ||||+|++++..+-          ..+.++|++.|.++++.... .  |  ++++++|+|||||+.... ++..++..  
T Consensus         1 ~~~~~iid~g~gn~----------~s~~~al~~~g~~~~v~~~~-~--~--~~l~~~d~lIlpG~~~~~-~~~~~l~~~~   64 (209)
T PRK13146          1 MMTVAIIDYGSGNL----------RSAAKALERAGAGADVVVTA-D--P--DAVAAADRVVLPGVGAFA-DCMRGLRAVG   64 (209)
T ss_pred             CCeEEEEECCCChH----------HHHHHHHHHcCCCccEEEEC-C--H--HHhcCCCEEEECCCCcHH-HHHHHHHHCC
Confidence            57999999988753          23567888888844333221 1  2  357899999999985432 11222222  


Q ss_pred             -HHHHHHHHHhcCCcEEEEchHHHHHHHH------------hCCccccC
Q 033165           81 -LIALLKQLDSLRKKVLGICFGHQVRAIT------------VFSSHINA  116 (126)
Q Consensus        81 -~~~~i~~~~~~~~PvlGIC~G~Q~la~~------------~Gg~v~~~  116 (126)
                       ..++++.+.+.++|+||||+|+|+|+++            +++++.+.
T Consensus        65 ~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~  113 (209)
T PRK13146         65 LGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRF  113 (209)
T ss_pred             cHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEc
Confidence             2344555556799999999999999999            88888764

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=99.61  E-value=2.1e-15  Score=118.62  Aligned_cols=92  Identities=20%  Similarity=0.310  Sum_probs=69.7

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCchHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGNDVWICKL   81 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~~~~~~~   81 (126)
                      .||+|++++..            +++.++|.+.|.++.++.... .++   ++  ..+|||||+|||.++.+    ....
T Consensus       174 ~~i~viD~G~k------------~ni~~~L~~~G~~v~vvp~~~-~~~---~i~~~~pDGIiLSgGPgdp~~----~~~~  233 (358)
T TIGR01368       174 KRVVVIDFGVK------------QNILRRLVKRGCEVTVVPYDT-DAE---EIKKYNPDGIFLSNGPGDPAA----VEPA  233 (358)
T ss_pred             cEEEEEeCCcH------------HHHHHHHHHCCCEEEEEcCCC-CHH---HHHhhCCCEEEECCCCCCHHH----HHHH
Confidence            58999988654            347788888999998876432 111   22  24699999999976532    3456


Q ss_pred             HHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165           82 IALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA  116 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~  116 (126)
                      .++++++++ ++|+||||+|||+|+.++||++.+.
T Consensus       234 i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl  267 (358)
T TIGR01368       234 IETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKM  267 (358)
T ss_pred             HHHHHHHHc-CCCEEEECHHHHHHHHHhCCceecc
Confidence            677888776 8999999999999999999988763

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=99.60  E-value=3.1e-15  Score=119.14  Aligned_cols=94  Identities=19%  Similarity=0.209  Sum_probs=68.6

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC-CCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD-DFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~-~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      .||++++++..            .++.+.|.+.|.+++++....   +..+ ...++|||||+|||.++.+ .++   ..
T Consensus       241 ~~IvviD~G~K------------~nIlr~L~~~G~~v~VvP~~~---~~~ei~~~~pDGIiLSnGPGDP~~-~~~---~i  301 (415)
T PLN02771        241 YHVIAYDFGIK------------HNILRRLASYGCKITVVPSTW---PASEALKMKPDGVLFSNGPGDPSA-VPY---AV  301 (415)
T ss_pred             CEEEEECCChH------------HHHHHHHHHcCCeEEEECCCC---CHHHHhhcCCCEEEEcCCCCChhH-hhH---HH
Confidence            47888877663            357888989999998886432   1111 1136999999999987733 232   34


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      +.++++. .++|+||||+|||+|+.++||++.+.+
T Consensus       302 e~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~K~~  335 (415)
T PLN02771        302 ETVKELL-GKVPVFGICMGHQLLGQALGGKTFKMK  335 (415)
T ss_pred             HHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEEECC
Confidence            4555554 479999999999999999999998754

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.59  E-value=2.6e-15  Score=109.67  Aligned_cols=95  Identities=17%  Similarity=0.168  Sum_probs=70.6

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc--hHHHHHH
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND--VWICKLI   82 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~--~~~~~~~   82 (126)
                      +|+||+.+..          +...+.+.|++.|.++++++.     +  +++.+||+|||+||.... ++.  .|...+.
T Consensus         1 ~i~~~d~~~~----------~~~~i~~~l~~~G~~v~~~~~-----~--~~l~~~d~iiipG~~~~~-~~~~~~~~~~~~   62 (205)
T PRK13141          1 MIAIIDYGMG----------NLRSVEKALERLGAEAVITSD-----P--EEILAADGVILPGVGAFP-DAMANLRERGLD   62 (205)
T ss_pred             CEEEEEcCCc----------hHHHHHHHHHHCCCeEEEECC-----H--HHhccCCEEEECCCCchH-HHHHHHHHcChH
Confidence            4788888765          345688999999999988651     1  256789999999974321 111  1333567


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHH------------hCCccccCC
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAIT------------VFSSHINAS  117 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~------------~Gg~v~~~~  117 (126)
                      ++|+++.+.++|+||||+|+|+|+++            +++++.+.+
T Consensus        63 ~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~  109 (205)
T PRK13141         63 EVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFP  109 (205)
T ss_pred             HHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEcC
Confidence            88888888899999999999999997            667777653

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=99.58  E-value=7e-15  Score=114.23  Aligned_cols=94  Identities=21%  Similarity=0.326  Sum_probs=73.9

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCchHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGNDVWICK   80 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~~~~~~   80 (126)
                      ..+|++++++-..            ++.+.|.++|++++++.....  +  +++  .++|||+|+-||.++..    .+.
T Consensus       179 ~~~Vv~iD~GvK~------------nIlr~L~~rg~~vtVVP~~t~--~--eeIl~~~pDGiflSNGPGDP~~----~~~  238 (368)
T COG0505         179 GKHVVVIDFGVKR------------NILRELVKRGCRVTVVPADTS--A--EEILALNPDGIFLSNGPGDPAP----LDY  238 (368)
T ss_pred             CcEEEEEEcCccH------------HHHHHHHHCCCeEEEEcCCCC--H--HHHHhhCCCEEEEeCCCCChhH----HHH
Confidence            4689999998873            366777889999999875421  1  122  58999999999988732    455


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA  116 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~  116 (126)
                      ..+.++++++..+|++|||+|||+|+.|+|++..+-
T Consensus       239 ~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~Km  274 (368)
T COG0505         239 AIETIKELLGTKIPIFGICLGHQLLALALGAKTYKM  274 (368)
T ss_pred             HHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeec
Confidence            667788888888899999999999999999987753

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=99.58  E-value=5.4e-15  Score=111.57  Aligned_cols=61  Identities=23%  Similarity=0.263  Sum_probs=48.6

Q ss_pred             CCCcCEEEEcCCCCCCC----C---C----chHH-HHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165           56 FGSYDGYVITGSCNDAH----G---N----DVWI-CKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA  116 (126)
Q Consensus        56 ~~~~d~iii~G~~~~~~----~---~----~~~~-~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~  116 (126)
                      ++.+||||++||+.++.    .   .    .+|. ..+.++++.+++.++|+||||+|||+|+.++||++.+.
T Consensus        59 l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~  131 (254)
T PRK11366         59 LPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRK  131 (254)
T ss_pred             HHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeec
Confidence            46799999999986652    1   1    1232 23568899999999999999999999999999999864

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=99.56  E-value=5.1e-15  Score=106.62  Aligned_cols=74  Identities=24%  Similarity=0.302  Sum_probs=61.3

Q ss_pred             HHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165           31 RMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVF  110 (126)
Q Consensus        31 ~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~G  110 (126)
                      ++|++.+.++..++..       ++++++|+||++||+....+...|...+.++|+++.+.++|+||||+|+|+|++++|
T Consensus        15 ~~l~~~g~~v~~v~~~-------~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~~~   87 (183)
T cd01749          15 RALERLGVEVIEVRTP-------EDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKEVE   87 (183)
T ss_pred             HHHHHCCCeEEEECCH-------HHhccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHHhc
Confidence            6778889888887742       246789999999998766554456666778899999999999999999999999999


Q ss_pred             C
Q 033165          111 S  111 (126)
Q Consensus       111 g  111 (126)
                      +
T Consensus        88 ~   88 (183)
T cd01749          88 D   88 (183)
T ss_pred             c
Confidence            8

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.55  E-value=1.2e-14  Score=105.78  Aligned_cols=94  Identities=18%  Similarity=0.173  Sum_probs=67.9

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH--HHHHH
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI--CKLIA   83 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~--~~~~~   83 (126)
                      |+|++.+..+-          +.+.++|+..|.++++++   +  +  +++.++|+||+||+.... +...+.  ..+.+
T Consensus         2 i~vid~g~gn~----------~~~~~~l~~~g~~v~~~~---~--~--~~l~~~d~lilpG~g~~~-~~~~~l~~~~~~~   63 (199)
T PRK13181          2 IAIIDYGAGNL----------RSVANALKRLGVEAVVSS---D--P--EEIAGADKVILPGVGAFG-QAMRSLRESGLDE   63 (199)
T ss_pred             EEEEeCCCChH----------HHHHHHHHHCCCcEEEEc---C--h--HHhccCCEEEECCCCCHH-HHHHHHHHCChHH
Confidence            88998877642          346678888898887764   1  2  256789999999975321 111222  23567


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHH-----------hCCccccCC
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAIT-----------VFSSHINAS  117 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~-----------~Gg~v~~~~  117 (126)
                      .++++.+.++|+||||+|+|+|+.+           +++++.+.+
T Consensus        64 ~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~  108 (199)
T PRK13181         64 ALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFR  108 (199)
T ss_pred             HHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcC
Confidence            7888788899999999999999999           678887643

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.55  E-value=2e-14  Score=104.55  Aligned_cols=88  Identities=16%  Similarity=0.153  Sum_probs=61.9

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      |||+|++++..+          .+.+.++|++.|.++++++   +  +  +++.++|+||+||+.... +...++.+ ..
T Consensus         1 m~i~iid~g~gn----------~~s~~~~l~~~g~~~~~v~---~--~--~~~~~~d~iIlPG~G~~~-~~~~~l~~-~~   61 (196)
T PRK13170          1 MNVVIIDTGCAN----------LSSVKFAIERLGYEPVVSR---D--P--DVILAADKLFLPGVGTAQ-AAMDQLRE-RE   61 (196)
T ss_pred             CeEEEEeCCCch----------HHHHHHHHHHCCCeEEEEC---C--H--HHhCCCCEEEECCCCchH-HHHHHHHH-cC
Confidence            689999988763          3456778888898888876   1  1  246779999998864332 22233322 23


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAITVF  110 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~~G  110 (126)
                      +++.+.+.++|+||||+|||+|+++++
T Consensus        62 l~~~i~~~~~PilGIClG~Qll~~~~~   88 (196)
T PRK13170         62 LIDLIKACTQPVLGICLGMQLLGERSE   88 (196)
T ss_pred             hHHHHHHcCCCEEEECHHHHHHhhhcc
Confidence            444455568999999999999999983

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.55  E-value=9.9e-14  Score=105.13  Aligned_cols=98  Identities=19%  Similarity=0.242  Sum_probs=69.1

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC-CCC--chH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA-HGN--DVW   77 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~-~~~--~~~   77 (126)
                      |.++||+||.....+.+. +        ..++|++.|.++.++.+.... .....+++||+|+|+||.... +..  ..|
T Consensus         1 ~~~~kvaVl~~pG~n~d~-e--------~~~Al~~aG~~v~~v~~~~~~-~~~~~l~~~DgLvipGGfs~gD~l~~g~~~   70 (261)
T PRK01175          1 MESIRVAVLRMEGTNCED-E--------TVKAFRRLGVEPEYVHINDLA-AERKSVSDYDCLVIPGGFSAGDYIRAGAIF   70 (261)
T ss_pred             CCCCEEEEEeCCCCCCHH-H--------HHHHHHHCCCcEEEEeecccc-ccccchhhCCEEEECCCCCcccccccchhh
Confidence            788999999997776432 1        357888899998888764311 112357899999999995321 111  122


Q ss_pred             HHH----HHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           78 ICK----LIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        78 ~~~----~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      ...    +.+.|++++++++|+||||.|+|+|+++
T Consensus        71 ~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~  105 (261)
T PRK01175         71 AARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVEL  105 (261)
T ss_pred             HHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHC
Confidence            222    3477888889999999999999999983

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=99.53  E-value=4.4e-14  Score=104.00  Aligned_cols=91  Identities=14%  Similarity=0.148  Sum_probs=64.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHH--H
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWIC--K   80 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~--~   80 (126)
                      |+||+||+.+..+-          .-+.++|+..|.++.+++.     +  +++.++|+||+||+.. +.....++.  .
T Consensus         1 ~~~v~iid~~~GN~----------~sl~~al~~~g~~v~vv~~-----~--~~l~~~d~iIlPG~g~-~~~~~~~l~~~g   62 (210)
T CHL00188          1 MMKIGIIDYSMGNL----------HSVSRAIQQAGQQPCIINS-----E--SELAQVHALVLPGVGS-FDLAMKKLEKKG   62 (210)
T ss_pred             CcEEEEEEcCCccH----------HHHHHHHHHcCCcEEEEcC-----H--HHhhhCCEEEECCCCc-hHHHHHHHHHCC
Confidence            56899999986642          2366788888998887752     1  2467799999988533 211223333  2


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCC
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFS  111 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg  111 (126)
                      +.+.|++.++.++|+||||+|||+|++..++
T Consensus        63 l~~~i~~~~~~~~pvlGIClG~Qll~~~~~~   93 (210)
T CHL00188         63 LITPIKKWIAEGNPFIGICLGLHLLFETSEE   93 (210)
T ss_pred             HHHHHHHHHHcCCCEEEECHHHHHHhhcccc
Confidence            4466777778899999999999999997554

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=99.52  E-value=3.6e-14  Score=103.19  Aligned_cols=93  Identities=18%  Similarity=0.206  Sum_probs=67.0

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--HHH
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--LIA   83 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--~~~   83 (126)
                      |+|++++..          +...+.++|+..|.++++++.     +  ++++++|+||++|+.. ..+..+|+..  ...
T Consensus         1 ~~~~~~~~g----------n~~~l~~~l~~~g~~v~v~~~-----~--~~l~~~d~lii~G~~~-~~~~~~~l~~~~~~~   62 (196)
T TIGR01855         1 IVIIDYGVG----------NLGSVKRALKRVGAEPVVVKD-----S--KEAELADKLILPGVGA-FGAAMARLRENGLDL   62 (196)
T ss_pred             CEEEecCCc----------HHHHHHHHHHHCCCcEEEEcC-----H--HHhccCCEEEECCCCC-HHHHHHHHHHcCcHH
Confidence            467777665          345678889999999888872     1  2457899999988532 2122345444  234


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHH------------hCCccccC
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAIT------------VFSSHINA  116 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~------------~Gg~v~~~  116 (126)
                      +++++.+.++|+||||+|+|+|+++            +|+++.+.
T Consensus        63 l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~  107 (196)
T TIGR01855        63 FVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKL  107 (196)
T ss_pred             HHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEEC
Confidence            5577888899999999999999999            67888765

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=99.50  E-value=8.9e-14  Score=100.99  Aligned_cols=86  Identities=21%  Similarity=0.256  Sum_probs=64.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-hHHH--
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-VWIC--   79 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-~~~~--   79 (126)
                      |++|+|++++..+-  +        ...++|++.|.++.+.+   +  |  +.+.++|+||+||-..  +.+. .-++  
T Consensus         1 m~~i~IIDyg~GNL--~--------Sv~~Aler~G~~~~vs~---d--~--~~i~~AD~liLPGVGa--f~~am~~L~~~   61 (204)
T COG0118           1 MMMVAIIDYGSGNL--R--------SVKKALERLGAEVVVSR---D--P--EEILKADKLILPGVGA--FGAAMANLRER   61 (204)
T ss_pred             CCEEEEEEcCcchH--H--------HHHHHHHHcCCeeEEec---C--H--HHHhhCCEEEecCCCC--HHHHHHHHHhc
Confidence            68999999998853  2        25688999998887754   2  3  3578999999999742  3322 2222  


Q ss_pred             HHHHHHHHHHhcCCcEEEEchHHHHHHH
Q 033165           80 KLIALLKQLDSLRKKVLGICFGHQVRAI  107 (126)
Q Consensus        80 ~~~~~i~~~~~~~~PvlGIC~G~Q~la~  107 (126)
                      .+.+.|++.++.++|+||||+|||+|.+
T Consensus        62 gl~~~i~~~~~~~kP~LGIClGMQlLfe   89 (204)
T COG0118          62 GLIEAIKEAVESGKPFLGICLGMQLLFE   89 (204)
T ss_pred             chHHHHHHHHhcCCCEEEEeHhHHhhhh
Confidence            3567788877788999999999999987

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=99.47  E-value=6.8e-14  Score=105.19  Aligned_cols=89  Identities=18%  Similarity=0.158  Sum_probs=63.7

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      ||||+||..+.....          . .++|++.|.++.+++.     +  +++.++|+||||||.............+.
T Consensus         1 ~m~igVLa~qG~~~e----------~-~~aL~~lG~ev~~v~~-----~--~~L~~~DgLILPGGfs~~~~~L~~~~gl~   62 (248)
T PLN02832          1 MMAIGVLALQGSFNE----------H-IAALRRLGVEAVEVRK-----P--EQLEGVSGLIIPGGESTTMAKLAERHNLF   62 (248)
T ss_pred             CcEEEEEeCCCchHH----------H-HHHHHHCCCcEEEeCC-----H--HHhccCCEEEeCCCHHHHHHHHHhhcchH
Confidence            579999988776442          2 4678888888876652     2  35778999999997543222111111356


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      +.|+++.+.++|+||||.|||+|++..
T Consensus        63 ~~I~~~v~~g~PvLGiC~GmqlLa~~~   89 (248)
T PLN02832         63 PALREFVKSGKPVWGTCAGLIFLAERA   89 (248)
T ss_pred             HHHHHHHHcCCCEEEEChhHHHHHHHh
Confidence            677887778999999999999999975

>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]

Probab=99.47  E-value=1.3e-13  Score=97.51  Aligned_cols=98  Identities=13%  Similarity=0.196  Sum_probs=73.2

Q ss_pred             HHHhhCCHHHHHHHHH-hhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEE
Q 033165           18 VKKKYGGYFGVFVRML-AEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVL   96 (126)
Q Consensus        18 ~~~~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~Pvl   96 (126)
                      +.|||++|+.++.++| .+.+..+.+|+-++-..+..+ ..++++++|+.||..+.|.-    -..+.++++ ...+|+|
T Consensus        23 ~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~-~~NP~~LliSPGPG~P~DsG----Is~~~i~~f-~~~iP~f   96 (223)
T KOG0026|consen   23 VIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELK-RKNPRGLLISPGPGTPQDSG----ISLQTVLEL-GPLVPLF   96 (223)
T ss_pred             EEecccchhHHHHHHhhhccCccEEEEecCcccHHHHh-hcCCCeEEecCCCCCCcccc----chHHHHHHh-CCCCcee
Confidence            3468999999999998 677999999985432223322 24799999999998886532    123445544 3579999


Q ss_pred             EEchHHHHHHHHhCCccccCC-cccc
Q 033165           97 GICFGHQVRAITVFSSHINAS-KIAG  121 (126)
Q Consensus        97 GIC~G~Q~la~~~Gg~v~~~~-~~~g  121 (126)
                      |||.|.|-+.+++||++..+. .+++
T Consensus        97 GvCMGlQCi~e~fGGkv~~a~~~i~H  122 (223)
T KOG0026|consen   97 GVCMGLQCIGEAFGGKIVRSPFGVMH  122 (223)
T ss_pred             eeehhhhhhhhhhCcEEeccCcceee
Confidence            999999999999999999876 4443

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=99.46  E-value=1.2e-12  Score=97.33  Aligned_cols=97  Identities=19%  Similarity=0.192  Sum_probs=69.8

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc--hH---H
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND--VW---I   78 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~--~~---~   78 (126)
                      |||+||.....+.+         .-+.+.|++.|.++.++....      ..++++|+||++||+... +..  .+   .
T Consensus         1 ~~v~Vl~~~G~n~~---------~~~~~al~~~G~~~~~i~~~~------~~l~~~d~lilpGG~~~~-d~~~~~~~~~~   64 (227)
T TIGR01737         1 MKVAVIRFPGTNCD---------RDTVYALRLLGVDAEIVWYED------GSLPDYDGVVLPGGFSYG-DYLRAGAIAAA   64 (227)
T ss_pred             CeEEEEeCCCcCcH---------HHHHHHHHHCCCeEEEEecCC------CCCCCCCEEEECCCCccc-ccccccchhcc
Confidence            48999999766432         114578888999888775321      136789999999996421 111  11   1


Q ss_pred             HHHHHHHHHHHhcCCcEEEEchHHHHHHHH--hCCccccC
Q 033165           79 CKLIALLKQLDSLRKKVLGICFGHQVRAIT--VFSSHINA  116 (126)
Q Consensus        79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~--~Gg~v~~~  116 (126)
                      ..+.++++++.+.++|++|||.|+|+|+.+  ++|++.++
T Consensus        65 ~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~n  104 (227)
T TIGR01737        65 SPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALLPN  104 (227)
T ss_pred             hHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCceeec
Confidence            335678888888999999999999999996  88887764

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=99.45  E-value=1.4e-13  Score=104.86  Aligned_cols=84  Identities=14%  Similarity=0.239  Sum_probs=63.3

Q ss_pred             HHHHHHhhCCCeEEEEEccCC--CCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcC-----CcEEEEch
Q 033165           28 VFVRMLAEEGETWDVFHVARG--EFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLR-----KKVLGICF  100 (126)
Q Consensus        28 ~~~~~l~~~g~~~~~~~~~~~--~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~-----~PvlGIC~  100 (126)
                      .+.+++++.|..+..+.+...  +++  +.++.+||||++||+.++ +..+|.+....+++.+++.+     +|+||||+
T Consensus        24 ~Yv~~l~~aG~~vvpi~~~~~~~~l~--~~l~~~dG~l~~Gg~~~~-~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiCl  100 (273)
T cd01747          24 SYVKFLESAGARVVPIWINESEEYYD--KLFKSINGILFPGGAVDI-DTSGYARTAKIIYNLALERNDAGDYFPVWGTCL  100 (273)
T ss_pred             HHHHHHHHCCCeEEEEEeCCcHHHHH--HHHhhCCEEEECCCCCcC-CccccchHHHHHHHHHHHhhhcCCCCcEEEEcH
Confidence            356788889998877765421  111  126789999999998766 34567777777788877653     89999999


Q ss_pred             HHHHHHHHhCCccc
Q 033165          101 GHQVRAITVFSSHI  114 (126)
Q Consensus       101 G~Q~la~~~Gg~v~  114 (126)
                      |+|+|+.++||++.
T Consensus       101 G~QlL~~~~gg~~~  114 (273)
T cd01747         101 GFELLTYLTSGETL  114 (273)
T ss_pred             HHHHHHHHhCCCcc
Confidence            99999999999743

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK05380 pyrG CTP synthetase; Validated

Probab=99.43  E-value=4.8e-13  Score=109.30  Aligned_cols=103  Identities=14%  Similarity=0.193  Sum_probs=71.7

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DDDFGSYDGYVITGSCNDAHGNDVWICK   80 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~~~~~~d~iii~G~~~~~~~~~~~~~~   80 (126)
                      .+|+++-=-.   ...+.|.|....+.++-...+.++++..+...++..   .+.+.++||||++||+....     ...
T Consensus       289 v~IalVGKY~---~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~-----~~g  360 (533)
T PRK05380        289 VTIALVGKYV---ELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERG-----IEG  360 (533)
T ss_pred             eEEEEEeCcc---CCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccc-----ccc
Confidence            5677774332   344556555555555555566777777765433321   23578999999999975432     234


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI  114 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~  114 (126)
                      ..++++.+.+.++|+||||+|||+|+.++|+++.
T Consensus       361 ~i~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~  394 (533)
T PRK05380        361 KILAIRYARENNIPFLGICLGMQLAVIEFARNVL  394 (533)
T ss_pred             HHHHHHHHHHCCCcEEEEchHHHHHHHHhccccc
Confidence            5667888888999999999999999999999983

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.43  E-value=7.8e-13  Score=96.47  Aligned_cols=85  Identities=20%  Similarity=0.269  Sum_probs=58.2

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--HHH
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--LIA   83 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--~~~   83 (126)
                      |+|++++..+          ...+.+.|++.|.++.+++   +  +  +++..+|+||+||+.... +...+...  +.+
T Consensus         2 i~iid~g~~n----------~~~v~~~l~~~g~~~~~~~---~--~--~~l~~~d~lilPG~g~~~-~~~~~l~~~~~~~   63 (201)
T PRK13152          2 IALIDYKAGN----------LNSVAKAFEKIGAINFIAK---N--P--KDLQKADKLLLPGVGSFK-EAMKNLKELGFIE   63 (201)
T ss_pred             EEEEECCCCc----------HHHHHHHHHHCCCeEEEEC---C--H--HHHcCCCEEEECCCCchH-HHHHHHHHcCcHH
Confidence            8899988874          2346788888888777654   1  2  246789999999885421 22222221  233


Q ss_pred             HHH-HHHhcCCcEEEEchHHHHHHHH
Q 033165           84 LLK-QLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        84 ~i~-~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .|+ .+++.++|+||||+|+|+|+.+
T Consensus        64 ~l~~~~~~~~~pvlGiC~G~Q~l~~~   89 (201)
T PRK13152         64 ALKEQVLVQKKPILGICLGMQLFLER   89 (201)
T ss_pred             HHHHHHHhCCCcEEEECHhHHHHhhc
Confidence            343 3457799999999999999997

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=99.42  E-value=1.9e-12  Score=92.92  Aligned_cols=109  Identities=15%  Similarity=0.193  Sum_probs=76.9

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhC--CCeEEEEEccCCCCCC-C-------------CCCCCcCEEEEcCCCC
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE--GETWDVFHVARGEFPD-D-------------DDFGSYDGYVITGSCN   69 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~~p~-~-------------~~~~~~d~iii~G~~~   69 (126)
                      |+||+..+....++.       .|.++|...  ..+++.+++.....+. +             ....+|||+||+|+|.
T Consensus         1 I~ilNlMp~k~~TE~-------qf~rlL~~~~~qv~v~~~~~~~h~~~~~~~~~l~~~Y~~~~~i~~~~yDGlIITGApv   73 (175)
T cd03131           1 IGILNLMPDKIQTER-------QFLRLLGNTPLQVEITFIRPSSHSSKNTPPEHVNRFYETFDDIRDAKFDGLIVTGAPV   73 (175)
T ss_pred             CEEEeCCCCcHHHHH-------HHHHHHhcCCccceEEEEecCCCCCCCCCHHHHHHhccCHHHccccCCCEEEEeCCCc
Confidence            689999998876554       467777654  4456666665322211 1             1357899999999986


Q ss_pred             CC--CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCcc-cc-CCcccc
Q 033165           70 DA--HGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSH-IN-ASKIAG  121 (126)
Q Consensus        70 ~~--~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v-~~-~~~~~g  121 (126)
                      ..  +++..+.+++.+++..+.+..+|+|+||||+|+...++||.. .. .+|..|
T Consensus        74 e~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~~G  129 (175)
T cd03131          74 EHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKIFG  129 (175)
T ss_pred             ccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCceEE
Confidence            54  344455666777777777788999999999999999999975 33 456655

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.42  E-value=1.4e-12  Score=97.51  Aligned_cols=100  Identities=20%  Similarity=0.201  Sum_probs=69.3

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc----hHHHH-
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND----VWICK-   80 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~----~~~~~-   80 (126)
                      ++||.....+.+.         -+.++|++.|.++.+++..+. .....++++||+|||+||+... +..    .|..+ 
T Consensus         1 v~vl~~pG~n~~~---------~~~~al~~aG~~v~~v~~~~~-~~~~~~l~~~d~liipGG~~~~-d~l~~~~~~~~~~   69 (238)
T cd01740           1 VAVLRFPGSNCDR---------DMAYAFELAGFEAEDVWHNDL-LAGRKDLDDYDGVVLPGGFSYG-DYLRAGAIAAASP   69 (238)
T ss_pred             CEEEEcCCcCCHH---------HHHHHHHHcCCCEEEEeccCC-ccccCCHhhCCEEEECCCCCcc-cccccccccccCh
Confidence            3566665554321         145778889999988876431 1122246899999999997422 211    13322 


Q ss_pred             -HHHHHHHHHhcCCcEEEEchHHHHHHHH--hCCccccC
Q 033165           81 -LIALLKQLDSLRKKVLGICFGHQVRAIT--VFSSHINA  116 (126)
Q Consensus        81 -~~~~i~~~~~~~~PvlGIC~G~Q~la~~--~Gg~v~~~  116 (126)
                       +.++++++.++++|+||||.|+|+|+++  +++++...
T Consensus        70 ~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~~  108 (238)
T cd01740          70 LLMEEVKEFAERGGLVLGICNGFQILVELGLLPGALIRN  108 (238)
T ss_pred             hHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCccccccC
Confidence             6788899889999999999999999998  88877653

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]

Probab=99.42  E-value=2.7e-13  Score=107.97  Aligned_cols=93  Identities=19%  Similarity=0.223  Sum_probs=71.1

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCc-hHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGND-VWICK   80 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~-~~~~~   80 (126)
                      -+|+||+.+..          |...+.+.+++.....+++.....   . ..+  ..+.||||+|||.++|.++ ||...
T Consensus        17 d~i~iLD~GaQ----------Y~~~I~RrvRel~v~se~~p~~t~---~-~~i~~~~~rgiIiSGGP~SVya~dAP~~dp   82 (552)
T KOG1622|consen   17 DTILILDFGAQ----------YGKVIDRRVRELNVQSEILPLTTP---A-KTITEYGPRGIIISGGPNSVYAEDAPSFDP   82 (552)
T ss_pred             ceEEEEeccch----------hhHHHHHHHHHHhhhhhhccCCCh---h-hhhhcCCceEEEEeCCCCccccCcCCCCCh
Confidence            47899987663          677788888887777777665321   1 112  5799999999999998754 77654


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA  116 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~  116 (126)
                            .+++-++|+||||+|||+|+..+||+|.+.
T Consensus        83 ------~if~~~vpvLGICYGmQ~i~~~~Gg~V~~~  112 (552)
T KOG1622|consen   83 ------AIFELGVPVLGICYGMQLINKLNGGTVVKG  112 (552)
T ss_pred             ------hHhccCCcceeehhHHHHHHHHhCCccccc
Confidence                  245568999999999999999999999863

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.40  E-value=3.8e-12  Score=93.91  Aligned_cols=89  Identities=22%  Similarity=0.289  Sum_probs=67.3

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC-CcCEEEEcCCCCCCCCCc---hHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG-SYDGYVITGSCNDAHGND---VWI   78 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~-~~d~iii~G~~~~~~~~~---~~~   78 (126)
                      ++|++||.-...+.+..         ...+++..|.+...++..+.      .+. +||+||+|||.+  |.+.   .|+
T Consensus         2 ~~kvaVi~fpGtN~d~d---------~~~A~~~aG~~~~~V~~~d~------~~~~~~d~vv~pGGFS--yGDyLr~Gai   64 (231)
T COG0047           2 RPKVAVLRFPGTNCDYD---------MAAAFERAGFEAEDVWHSDL------LLGRDFDGVVLPGGFS--YGDYLRAGAI   64 (231)
T ss_pred             CceEEEEEcCCcCchHH---------HHHHHHHcCCCceEEEeeec------ccCCCccEEEEcCCCC--cccccCcchH
Confidence            68999999999886432         34677888999888775422      233 799999999964  3332   455


Q ss_pred             H---HHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           79 C---KLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        79 ~---~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .   .+++-++++.+.++|+||||.|+|+|.++
T Consensus        65 aa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~   97 (231)
T COG0047          65 AAIAPVMDEVREFAEKGKPVLGICNGFQILSEA   97 (231)
T ss_pred             HhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHc
Confidence            4   46677788888999999999999999963

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.39  E-value=7.2e-12  Score=92.71  Aligned_cols=98  Identities=19%  Similarity=0.217  Sum_probs=70.1

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHh-hCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCC----CchHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLA-EEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHG----NDVWI   78 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~----~~~~~   78 (126)
                      |||+||.....+.+. +        +.++|+ ..|.++..+....      .+++++|+|||+||+.....    .....
T Consensus         1 ~~v~Vl~~~G~n~~~-d--------~~~a~~~~~G~~~~~v~~~~------~~l~~~D~lvipGG~~~~d~l~~~~~~~~   65 (219)
T PRK03619          1 MKVAVIVFPGSNCDR-D--------MARALRDLLGAEPEYVWHKE------TDLDGVDAVVLPGGFSYGDYLRCGAIAAF   65 (219)
T ss_pred             CEEEEEecCCcChHH-H--------HHHHHHhcCCCeEEEEecCc------CCCCCCCEEEECCCCchhhhhccchhhhc
Confidence            489999998876321 1        356777 7888877665321      24678999999999642110    00112


Q ss_pred             HHHHHHHHHHHhcCCcEEEEchHHHHHHHH--hCCccccC
Q 033165           79 CKLIALLKQLDSLRKKVLGICFGHQVRAIT--VFSSHINA  116 (126)
Q Consensus        79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~--~Gg~v~~~  116 (126)
                      ..+.++|+++.++++|++|||.|+|+|+++  +++++.+.
T Consensus        66 ~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n  105 (219)
T PRK03619         66 SPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRN  105 (219)
T ss_pred             hHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEEc
Confidence            446778888888999999999999999997  88887754

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.38  E-value=6e-13  Score=95.69  Aligned_cols=88  Identities=24%  Similarity=0.250  Sum_probs=60.9

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK   80 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~   80 (126)
                      |+ +||+||.......+           -.++|++.|.++.+++   +  |  ++++++|+||+|||+............
T Consensus         1 ~~-~~igVLalqG~~~E-----------h~~al~~lG~~v~~v~---~--~--~~l~~~D~LILPGG~~t~~~~ll~~~~   61 (179)
T PRK13526          1 MT-QKVGVLAIQGGYQK-----------HADMFKSLGVEVKLVK---F--N--NDFDSIDRLVIPGGESTTLLNLLNKHQ   61 (179)
T ss_pred             CC-cEEEEEECCccHHH-----------HHHHHHHcCCcEEEEC---C--H--HHHhCCCEEEECCChHHHHHHHhhhcC
Confidence            55 79999998887543           2467778888766655   1  2  257899999999985432101111123


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      +.+.|++..+ ++|++|||.|+|+|++.
T Consensus        62 l~~~Ik~~~~-~kpilGICaG~qlL~~~   88 (179)
T PRK13526         62 IFDKLYNFCS-SKPVFGTCAGSIILSKG   88 (179)
T ss_pred             cHHHHHHHHc-CCcEEEEcHHHHHHHcc
Confidence            5677777664 78999999999999983

>PRK06186 hypothetical protein; Validated

Probab=99.38  E-value=4e-12  Score=94.59  Aligned_cols=73  Identities=16%  Similarity=0.151  Sum_probs=52.2

Q ss_pred             hCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCc
Q 033165           35 EEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSS  112 (126)
Q Consensus        35 ~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~  112 (126)
                      ..+.++++..+...++.....+.++|||+++||... ..    ++.....++.+.++++|+||||+|||++...+.-.
T Consensus        30 ~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~-rg----~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arn  102 (229)
T PRK06186         30 VLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPY-RN----DDGALTAIRFARENGIPFLGTCGGFQHALLEYARN  102 (229)
T ss_pred             hcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCc-cc----HhHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhh
Confidence            356777777776544433235889999999999542 22    34556678888899999999999999755544443

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=99.36  E-value=5.2e-12  Score=103.98  Aligned_cols=89  Identities=16%  Similarity=0.177  Sum_probs=66.3

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--   80 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--   80 (126)
                      ++||+|++++..+-          ..+.+.|++.|.++.+++.     |  +++.++|+||+||+.... ...+++.+  
T Consensus         6 ~~~i~iiDyG~GN~----------~sl~~al~~~G~~v~~v~~-----~--~~l~~~D~lIlpG~gs~~-~~m~~L~~~g   67 (538)
T PLN02617          6 DSEVTLLDYGAGNV----------RSVRNAIRHLGFTIKDVQT-----P--EDILNADRLIFPGVGAFG-SAMDVLNNRG   67 (538)
T ss_pred             CCeEEEEECCCCCH----------HHHHHHHHHCCCeEEEECC-----h--hhhccCCEEEECCCCCHH-HHHHHHHHcC
Confidence            57999999998853          2366788889988876641     2  257899999999964321 12244443  


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      +.+.|+++++.++|+||||+|||+|++++
T Consensus        68 l~~~i~~~i~~g~PvLGIC~G~QlLa~~~   96 (538)
T PLN02617         68 MAEALREYIQNDRPFLGICLGLQLLFESS   96 (538)
T ss_pred             HHHHHHHHHHcCCCEEEECHHHHHHhhhh
Confidence            56778888888999999999999999974

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.36  E-value=2.9e-12  Score=93.16  Aligned_cols=84  Identities=18%  Similarity=0.175  Sum_probs=60.7

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--HHH
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--LIA   83 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--~~~   83 (126)
                      |+|++++..+-          ..+.++|++.|.++.+++   +  +  +++.++|+||+||+.... +...++.+  +.+
T Consensus         2 i~iidyg~gN~----------~s~~~al~~~g~~~~~v~---~--~--~~l~~~D~lIlPG~g~~~-~~~~~L~~~gl~~   63 (192)
T PRK13142          2 IVIVDYGLGNI----------SNVKRAIEHLGYEVVVSN---T--S--KIIDQAETIILPGVGHFK-DAMSEIKRLNLNA   63 (192)
T ss_pred             EEEEEcCCccH----------HHHHHHHHHcCCCEEEEe---C--H--HHhccCCEEEECCCCCHH-HHHHHHHHCCcHH
Confidence            88999887742          236678888898888765   1  2  256789999999985422 22334443  456


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      .|++  +.++|+||||+|||+|++..
T Consensus        64 ~i~~--~~g~PvlGIClGmQlL~~~~   87 (192)
T PRK13142         64 ILAK--NTDKKMIGICLGMQLMYEHS   87 (192)
T ss_pred             HHHH--hCCCeEEEECHHHHHHhhhc
Confidence            6666  46899999999999999976

>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=2.1e-12  Score=104.89  Aligned_cols=99  Identities=17%  Similarity=0.170  Sum_probs=65.4

Q ss_pred             HhhCCHHHHHHHHHhhC-CC-eEEEEEccC---CCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCc
Q 033165           20 KKYGGYFGVFVRMLAEE-GE-TWDVFHVAR---GEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKK   94 (126)
Q Consensus        20 ~~~~~~~~~~~~~l~~~-g~-~~~~~~~~~---~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~P   94 (126)
                      ++|++|+.++.+++... +. .+.+++...   +.+......-.||+||+..||.++.. ...+.-+.+++...  +++|
T Consensus        21 D~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~-a~d~gI~~rl~~~~--~~iP   97 (767)
T KOG1224|consen   21 DNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMC-AADIGICLRLLLEC--RDIP   97 (767)
T ss_pred             ecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCc-HHHHHHHHHHHHhc--CCCc
Confidence            56899999999999664 33 344444321   11111112245999999988888732 22233333444333  4799


Q ss_pred             EEEEchHHHHHHHHhCCccccCCcccc
Q 033165           95 VLGICFGHQVRAITVFSSHINASKIAG  121 (126)
Q Consensus        95 vlGIC~G~Q~la~~~Gg~v~~~~~~~g  121 (126)
                      |||||+|+|.|+.+.|+.|..+..+.+
T Consensus        98 ilGICLGfQal~l~hGA~v~~~n~p~H  124 (767)
T KOG1224|consen   98 ILGICLGFQALGLVHGAHVVHANEPVH  124 (767)
T ss_pred             eeeeehhhHhHhhhcccceecCCCccc
Confidence            999999999999999999997655443

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=99.35  E-value=2.6e-12  Score=95.55  Aligned_cols=111  Identities=15%  Similarity=0.164  Sum_probs=66.2

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCC-----HHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC----
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGG-----YFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA----   71 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~-----~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~----   71 (126)
                      |+++-|+|..+...+..-   ++.     ....+.+....+|--.-++....+.......++..||||++|| .++    
T Consensus         1 ~~kpvIGIt~~~~~~~~~---~~~~~~~~~~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg-~nV~P~~   76 (243)
T COG2071           1 MSKPVIGITADLIQEIVG---FDGNPWSYLPYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGG-SNVDPSL   76 (243)
T ss_pred             CCCCEEEEecchhccccc---cCCccHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCC-CcCCHHH
Confidence            777888887665542110   111     1123333333444322233321111000123578999999999 333    


Q ss_pred             CCCc----------hHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCcccc
Q 033165           72 HGND----------VWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHIN  115 (126)
Q Consensus        72 ~~~~----------~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~  115 (126)
                      |.+.          ....-...+|+.++++++|+||||.|+|+|+.++||++..
T Consensus        77 YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q  130 (243)
T COG2071          77 YGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQ  130 (243)
T ss_pred             cCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeeh
Confidence            1111          1122366889999999999999999999999999998875

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.33  E-value=6.8e-12  Score=92.37  Aligned_cols=87  Identities=13%  Similarity=0.167  Sum_probs=61.8

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH--HHHHH
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI--CKLIA   83 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~--~~~~~   83 (126)
                      |+||+++..+-  .        .+.+.++..+.+...++    + +  +++.++|+||+||+.... +...++  ..+.+
T Consensus         2 i~iidyg~gNl--~--------s~~~al~~~~~~~~~~~----~-~--~~l~~~d~iIlPG~g~~~-~~~~~l~~~gl~~   63 (210)
T PRK14004          2 IAILDYGMGNI--H--------SCLKAVSLYTKDFVFTS----D-P--ETIENSKALILPGDGHFD-KAMENLNSTGLRS   63 (210)
T ss_pred             EEEEECCCchH--H--------HHHHHHHHcCCeEEEEC----C-H--HHhccCCEEEECCCCchH-HHHHHHHHcCcHH
Confidence            89999988742  1        25677777777665543    1 2  246799999999995321 222222  23667


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAITVF  110 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~~G  110 (126)
                      .|++.+++++|+||||+|||+|+++++
T Consensus        64 ~i~~~~~~~~pilGiC~G~Q~l~~~~~   90 (210)
T PRK14004         64 TIDKHVESGKPLFGICIGFQILFESSE   90 (210)
T ss_pred             HHHHHHHcCCCEEEECHhHHHHHHhcc
Confidence            788888889999999999999999875

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=99.32  E-value=1.2e-11  Score=105.46  Aligned_cols=92  Identities=22%  Similarity=0.369  Sum_probs=69.1

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      +.||+.++|+-..            +..+.|...|++++++...   +|.. + .+||||+++.||.++.--..    +.
T Consensus       172 ~~~I~aiDcG~K~------------N~IRcL~~RGa~vtVvPw~---~~i~-~-~~yDGlflSNGPGdPe~~~~----~v  230 (1435)
T KOG0370|consen  172 SLRILAIDCGLKY------------NQIRCLVKRGAEVTVVPWD---YPIA-K-EEYDGLFLSNGPGDPELCPL----LV  230 (1435)
T ss_pred             ccEEEEcccCchH------------HHHHHHHHhCceEEEecCC---cccc-c-cccceEEEeCCCCCchhhHH----HH
Confidence            4689999998764            3567788899999998743   2321 2 48999999999988743223    33


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCcccc
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHIN  115 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~  115 (126)
                      +-++++++.++|++|||+|||+||.+.|++..+
T Consensus       231 ~~vr~lL~~~~PvfGIClGHQllA~AaGakT~K  263 (1435)
T KOG0370|consen  231 QNVRELLESNVPVFGICLGHQLLALAAGAKTYK  263 (1435)
T ss_pred             HHHHHHHhCCCCeEEEehhhHHHHHhhCCceEE
Confidence            445555555799999999999999999998764

>TIGR00337 PyrG CTP synthase

Probab=99.30  E-value=6.7e-12  Score=102.59  Aligned_cols=100  Identities=16%  Similarity=0.279  Sum_probs=64.6

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC----eEEEEEccCCCCCC--CCCCCCcCEEEEcCCCCCCCCCchH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE----TWDVFHVARGEFPD--DDDFGSYDGYVITGSCNDAHGNDVW   77 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~~~~~~~~~~~~p~--~~~~~~~d~iii~G~~~~~~~~~~~   77 (126)
                      .+|+++---..   ..+.   |. .+.++|..++.    .+.+..+...++..  .+.+.++|||+++||+.+...    
T Consensus       290 v~IalVGKY~~---~~da---Y~-SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~~----  358 (525)
T TIGR00337       290 VTIGIVGKYVE---LKDS---YL-SVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERGV----  358 (525)
T ss_pred             cEEEEEeCCcC---CHHH---HH-HHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChhh----
Confidence            57777744333   3333   43 24456666665    44444443222211  123678999999999865432    


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCcccc
Q 033165           78 ICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHIN  115 (126)
Q Consensus        78 ~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~  115 (126)
                       ....+.++.+.+.++|+||||+|||+++.++|.++..
T Consensus       359 -~g~i~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~g  395 (525)
T TIGR00337       359 -EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLG  395 (525)
T ss_pred             -cChHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcC
Confidence             2344567777788999999999999999999998765

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=99.30  E-value=9.5e-12  Score=90.37  Aligned_cols=75  Identities=23%  Similarity=0.324  Sum_probs=58.3

Q ss_pred             HHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH--HHHHHHHHHHHhcCCcEEEEchHHHHHH
Q 033165           29 FVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI--CKLIALLKQLDSLRKKVLGICFGHQVRA  106 (126)
Q Consensus        29 ~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~--~~~~~~i~~~~~~~~PvlGIC~G~Q~la  106 (126)
                      +.++++..|.+++++++..       ++.++|+|||+||... ..+..|.  ..+.+.|+++.++++|++|||.|+|+|+
T Consensus        15 l~~~~~~~G~~~~~~~~~~-------~~~~~d~lilpGg~~~-~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~   86 (194)
T cd01750          15 LDPLAREPGVDVRYVEVPE-------GLGDADLIILPGSKDT-IQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLG   86 (194)
T ss_pred             HHHHHhcCCceEEEEeCCC-------CCCCCCEEEECCCcch-HHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhh
Confidence            5677788899999888532       2567999999999732 2334553  3477888888889999999999999999


Q ss_pred             HHhCC
Q 033165          107 ITVFS  111 (126)
Q Consensus       107 ~~~Gg  111 (126)
                      +.+..
T Consensus        87 ~~~~~   91 (194)
T cd01750          87 KYIVD   91 (194)
T ss_pred             hhccC
Confidence            98844

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.26  E-value=1.5e-12  Score=96.12  Aligned_cols=88  Identities=20%  Similarity=0.292  Sum_probs=51.9

Q ss_pred             HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC----CCC-----chHHHH-----HHHHHHHHHhcCC
Q 033165           28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA----HGN-----DVWICK-----LIALLKQLDSLRK   93 (126)
Q Consensus        28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~----~~~-----~~~~~~-----~~~~i~~~~~~~~   93 (126)
                      .+.++++..|...-.+.+..+.-....-++..||||+|||..+.    |.+     ..+...     ..++++.+.++++
T Consensus        28 ~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~  107 (217)
T PF07722_consen   28 SYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGK  107 (217)
T ss_dssp             HHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT-
T ss_pred             HHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCC
Confidence            35677788888777776542110001135789999999998533    111     112222     3355667777899


Q ss_pred             cEEEEchHHHHHHHHhCCcccc
Q 033165           94 KVLGICFGHQVRAITVFSSHIN  115 (126)
Q Consensus        94 PvlGIC~G~Q~la~~~Gg~v~~  115 (126)
                      |+||||.|||+|+.++||++..
T Consensus       108 PilGICrG~Q~lnv~~GGtl~q  129 (217)
T PF07722_consen  108 PILGICRGMQLLNVAFGGTLYQ  129 (217)
T ss_dssp             -EEEETHHHHHHHHHCCSSEES
T ss_pred             CEEEEcHHHHHHHHHhCCCcee
Confidence            9999999999999999998864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>PLN02327 CTP synthase

Probab=99.22  E-value=6.4e-11  Score=97.26  Aligned_cols=103  Identities=18%  Similarity=0.204  Sum_probs=63.2

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-------------CCCCCcCEEEEcCCCCC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-------------DDFGSYDGYVITGSCND   70 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-------------~~~~~~d~iii~G~~~~   70 (126)
                      .||+++-=-.   ...+.|-|-..-|.++-...+.++++..+...++...             +.+.++|||++|||+.+
T Consensus       298 v~IalVGKY~---~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~  374 (557)
T PLN02327        298 VRIAMVGKYT---GLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGD  374 (557)
T ss_pred             eEEEEEeccc---CCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCC
Confidence            5677774222   2223332222222222234567777776654333211             23788999999999754


Q ss_pred             CCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165           71 AHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI  114 (126)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~  114 (126)
                      ...     ......++.+.+.++|+||||+|||+++..++..+-
T Consensus       375 ~~~-----~G~i~ai~~are~~iP~LGIClGmQl~viefaRnvl  413 (557)
T PLN02327        375 RGV-----EGKILAAKYARENKVPYLGICLGMQIAVIEFARSVL  413 (557)
T ss_pred             ccc-----ccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhc
Confidence            311     223445667777899999999999999999988654

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=99.21  E-value=5.4e-11  Score=86.72  Aligned_cols=77  Identities=12%  Similarity=0.194  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH---HHHHHHHHHHHhcCCcEEEEchH
Q 033165           25 YFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI---CKLIALLKQLDSLRKKVLGICFG  101 (126)
Q Consensus        25 ~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~---~~~~~~i~~~~~~~~PvlGIC~G  101 (126)
                      |.+++ +.|++.|.++.++++..+     +.+.++|+||||||.....  ..++   ..+.+.|+++.++++|++|||.|
T Consensus        13 y~e~~-~~l~~~G~~v~~~s~~~~-----~~l~~~D~lilPGG~~~~~--~~~L~~~~~~~~~i~~~~~~g~pilgICgG   84 (198)
T cd03130          13 YPENL-ELLEAAGAELVPFSPLKD-----EELPDADGLYLGGGYPELF--AEELSANQSMRESIRAFAESGGPIYAECGG   84 (198)
T ss_pred             cHHHH-HHHHHCCCEEEEECCCCC-----CCCCCCCEEEECCCchHHH--HHHHHhhHHHHHHHHHHHHcCCCEEEEccc
Confidence            44444 567788998888764321     2345699999999843221  2333   23677888888889999999999


Q ss_pred             HHHHHHHh
Q 033165          102 HQVRAITV  109 (126)
Q Consensus       102 ~Q~la~~~  109 (126)
                      +|+|++.+
T Consensus        85 ~qlL~~~~   92 (198)
T cd03130          85 LMYLGESL   92 (198)
T ss_pred             HHHHHHHh
Confidence            99999977

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=99.03  E-value=7.4e-10  Score=83.97  Aligned_cols=95  Identities=21%  Similarity=0.293  Sum_probs=61.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc----hHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND----VWI   78 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~----~~~   78 (126)
                      ++|++|+.....+.+..         ...+|+..|.+.+.++..+- ......+++||+|+++||.+-- |..    -|.
T Consensus         1 kpkV~Vl~~pGtNce~e---------~~~A~~~aG~~~~~v~~~dl-~~~~~~l~~~~~lvipGGFS~g-D~l~sg~~~a   69 (259)
T PF13507_consen    1 KPKVAVLRFPGTNCERE---------TAAAFENAGFEPEIVHINDL-LSGESDLDDFDGLVIPGGFSYG-DYLRSGAIAA   69 (259)
T ss_dssp             --EEEEEE-TTEEEHHH---------HHHHHHCTT-EEEEEECCHH-HTTS--GCC-SEEEE-EE-GGG-GTTSTTHHHH
T ss_pred             CCEEEEEECCCCCCHHH---------HHHHHHHcCCCceEEEEEec-ccccCchhhCcEEEECCccCcc-ccchHHHHHH
Confidence            46999999988875422         46788899999988875321 1222368999999999996422 221    243


Q ss_pred             HH------HHHHHHHHHhc-CCcEEEEchHHHHHHHH
Q 033165           79 CK------LIALLKQLDSL-RKKVLGICFGHQVRAIT  108 (126)
Q Consensus        79 ~~------~~~~i~~~~~~-~~PvlGIC~G~Q~la~~  108 (126)
                      ..      +.+.|++++++ ++++||||.|+|+|.+.
T Consensus        70 ~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~  106 (259)
T PF13507_consen   70 ARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVEL  106 (259)
T ss_dssp             HHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCC
T ss_pred             HHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHh
Confidence            32      46778888888 99999999999999884

>PRK00784 cobyric acid synthase; Provisional

Probab=99.02  E-value=1.3e-09  Score=89.02  Aligned_cols=88  Identities=20%  Similarity=0.257  Sum_probs=64.9

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--   80 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--   80 (126)
                      .||+|+..+.-..        | +++ +.|++ .|.++..+++.       +.+.++|+|+|+||....+ ...|..+  
T Consensus       252 ~~i~v~~~~~a~~--------f-~nl-~~l~~~~g~~v~~~s~~-------~~l~~~d~lilpGg~~~~~-~~~~~~~~~  313 (488)
T PRK00784        252 LRIAVIRLPRISN--------F-TDF-DPLRAEPGVDVRYVRPG-------EPLPDADLVILPGSKNTIA-DLAWLRESG  313 (488)
T ss_pred             eEEEEEeCCCcCC--------c-cCh-HHHhhcCCCeEEEECCc-------cccccCCEEEECCccchHH-HHHHHHHcC
Confidence            5899998665432        2 234 34554 89888887642       1456899999999974433 2356655  


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      +.+.|+++.++++|++|||.|+|+|++.+
T Consensus       314 l~~~i~~~~~~g~pilg~C~G~~~L~~~~  342 (488)
T PRK00784        314 WDEAIRAHARRGGPVLGICGGYQMLGRRI  342 (488)
T ss_pred             HHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence            67888888889999999999999999987

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=98.98  E-value=7e-09  Score=76.79  Aligned_cols=105  Identities=17%  Similarity=0.136  Sum_probs=66.9

Q ss_pred             CCeEEEEEcCCCch-HHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-----------CC------------------C
Q 033165            3 GKKFAVLLCAEDSE-YVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-----------FP------------------D   52 (126)
Q Consensus         3 ~~ki~Il~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-----------~p------------------~   52 (126)
                      |+||+|+-.+...- ..++  -++... .+.|++.|++++++.+....           .+                  .
T Consensus         1 ~kkVlills~~~~~dG~e~--~E~~~P-~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (217)
T PRK11780          1 MKKIAVILSGCGVYDGSEI--HEAVLT-LLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKD   77 (217)
T ss_pred             CCEEEEEEccCCCCCCEeh--hHHHHH-HHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCc
Confidence            36899998732110 0000  012222 36778899999888764211           01                  0


Q ss_pred             --CCCCCCcCEEEEcCCCCCCC---C------CchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165           53 --DDDFGSYDGYVITGSCNDAH---G------NDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVF  110 (126)
Q Consensus        53 --~~~~~~~d~iii~G~~~~~~---~------~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~G  110 (126)
                        ..+.++||+|+||||.....   +      .....+.+.++++++.++++|+.+||.|.++|+.++|
T Consensus        78 l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~  146 (217)
T PRK11780         78 LAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG  146 (217)
T ss_pred             hhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc
Confidence              01246899999999954321   1      1122356888999999999999999999999999873

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=98.95  E-value=5.1e-09  Score=84.68  Aligned_cols=94  Identities=19%  Similarity=0.330  Sum_probs=57.9

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh----CCCeEEEEEccCCCCCCC--CCCCC-cCEEEEcCCCCCCCCCch
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE----EGETWDVFHVARGEFPDD--DDFGS-YDGYVITGSCNDAHGNDV   76 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~~~~~~~~~~~~p~~--~~~~~-~d~iii~G~~~~~~~~~~   76 (126)
                      .||+++---..   ..|   +|...+ .+|..    .+.++++..+...++...  +.+.. +|||++|||...- .   
T Consensus       289 v~IalVGKYv~---l~D---aY~Sv~-EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~R-G---  357 (533)
T COG0504         289 VTIALVGKYVE---LPD---AYKSVI-EALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYR-G---  357 (533)
T ss_pred             eEEEEEECCcC---chh---HHHHHH-HHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCcC-c---
Confidence            45777744333   222   444444 34444    355666666654444321  12333 9999999997521 2   


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           77 WICKLIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        77 ~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                       ++.-...++.+.++++|+||||+|||+....+
T Consensus       358 -~eGkI~Ai~yAREn~iP~lGIClGmQ~aviE~  389 (533)
T COG0504         358 -VEGKIAAIRYARENNIPFLGICLGMQLAVIEF  389 (533)
T ss_pred             -hHHHHHHHHHHHhcCCCEEEEchhHHHHHHHH
Confidence             23445567888889999999999999986543

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.93  E-value=2.6e-09  Score=87.04  Aligned_cols=81  Identities=15%  Similarity=0.250  Sum_probs=51.9

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC-eEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE-TWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      |||+||.....               .+.++..+. +++++....   |  +++.++|+||||||....  ...+...+.
T Consensus         1 m~iGvlal~sv---------------~~al~~lg~~~~~vv~~~~---~--~~l~~~D~lILPGG~~~~--~~~l~~~l~   58 (476)
T PRK06278          1 MEIGLLDIKGS---------------LPCFENFGNLPTKIIDENN---I--KEIKDLDGLIIPGGSLVE--SGSLTDELK   58 (476)
T ss_pred             CEEEEEehhhH---------------HHHHHHhcCCCcEEEEeCC---h--HHhccCCEEEECCCchhh--cchHHHHHH
Confidence            48999976553               233544554 556655321   2  367899999999985321  111233344


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      +.+++.   ++|+||||.|+|+|++..
T Consensus        59 ~~i~~~---g~pvlGICgG~QmLg~~~   82 (476)
T PRK06278         59 KEILNF---DGYIIGICSGFQILSEKI   82 (476)
T ss_pred             HHHHHc---CCeEEEEcHHHHhccccc
Confidence            444443   899999999999999875

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=98.89  E-value=5e-09  Score=77.05  Aligned_cols=96  Identities=17%  Similarity=0.078  Sum_probs=70.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-CCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-GETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGNDVWICK   80 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~~~~~~   80 (126)
                      ..||+++-+....      +.+|..++.++|++. |.+++.+....+  +. .+.+..+|+|+++||  +......++.+
T Consensus        31 ~~~i~~IptAs~~------~~~~~~~~~~a~~~l~G~~~~~~~~~~~--~~~~~~l~~ad~I~l~GG--~~~~~~~~l~~  100 (212)
T cd03146          31 RPKVLFVPTASGD------RDEYTARFYAAFESLRGVEVSHLHLFDT--EDPLDALLEADVIYVGGG--NTFNLLAQWRE  100 (212)
T ss_pred             CCeEEEECCCCCC------HHHHHHHHHHHHhhccCcEEEEEeccCc--ccHHHHHhcCCEEEECCc--hHHHHHHHHHH
Confidence            4688999776663      235778889999999 998887765431  22 236789999999997  33222233332


Q ss_pred             --HHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           81 --LIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        81 --~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                        +.+.|+++.++++|++|+|.|+|+++..
T Consensus       101 ~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~  130 (212)
T cd03146         101 HGLDAILKAALERGVVYIGWSAGSNCWFPS  130 (212)
T ss_pred             cCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence              5677888788899999999999999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.88  E-value=2.5e-08  Score=62.98  Aligned_cols=77  Identities=30%  Similarity=0.462  Sum_probs=56.1

Q ss_pred             HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHH
Q 033165           28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVR  105 (126)
Q Consensus        28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~l  105 (126)
                      .+.+.++..+.+++++.......+..+...++|+++++|+....... ++.....+++++..+.++|++|+|.|+|++
T Consensus        16 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~-~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l   92 (115)
T cd01653          16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDL-ARDEALLALLREAAAAGKPILGICLGAQLL   92 (115)
T ss_pred             HHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhh-ccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence            35577778888888887654322212346799999999997654322 133567778888888899999999999999

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi

Probab=98.85  E-value=1.1e-08  Score=78.81  Aligned_cols=112  Identities=20%  Similarity=0.221  Sum_probs=66.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEE--EEEccCCCC--CCC----------C--CCCCcCEEEEcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWD--VFHVARGEF--PDD----------D--DFGSYDGYVITG   66 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~--~~~~~~~~~--p~~----------~--~~~~~d~iii~G   66 (126)
                      .+||+||+..+.....+.       .|.++|.....+++  .+.+..-..  ...          +  .-..|||+||+|
T Consensus        34 pL~I~IlNLMP~K~~TE~-------Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITG  106 (298)
T PF04204_consen   34 PLKIGILNLMPDKEETER-------QFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITG  106 (298)
T ss_dssp             -EEEEEE---SSHHHHHH-------HHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE--
T ss_pred             ceEEEEEecccchHHHHH-------HHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeC
Confidence            379999999999765543       46777776665554  443321100  000          1  235899999999


Q ss_pred             CCCCC--CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHH-HHHHhCCcccc-CCcccc
Q 033165           67 SCNDA--HGNDVWICKLIALLKQLDSLRKKVLGICFGHQV-RAITVFSSHIN-ASKIAG  121 (126)
Q Consensus        67 ~~~~~--~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~-la~~~Gg~v~~-~~~~~g  121 (126)
                      .|-..  +++.++..++.+++..+.+...+.|.||||+|+ |...+|-+-.. .+|++|
T Consensus       107 APvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfG  165 (298)
T PF04204_consen  107 APVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKLFG  165 (298)
T ss_dssp             -TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEEEE
T ss_pred             CCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCccee
Confidence            98543  455577788888888887788999999999999 66666765443 456665

Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.85  E-value=1.6e-08  Score=81.92  Aligned_cols=94  Identities=15%  Similarity=0.166  Sum_probs=64.1

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH--HHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI--CKL   81 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~--~~~   81 (126)
                      .||+|+.-..-+      + .|.+.+ +.|++.|.++..+++..+     +++.++|+|+|+||....++. .+.  ..+
T Consensus       246 ~~iava~d~af~------f-~y~e~~-~~L~~~g~~~~~~~~~~~-----~~l~~~D~lilpGG~~~~~~~-~l~~~~~~  311 (451)
T PRK01077        246 VRIAVARDAAFN------F-YYPENL-ELLRAAGAELVFFSPLAD-----EALPDCDGLYLGGGYPELFAA-ELAANTSM  311 (451)
T ss_pred             ceEEEEecCccc------c-cHHHHH-HHHHHCCCEEEEeCCcCC-----CCCCCCCEEEeCCCchhhHHH-HHhhCchh
Confidence            488888754221      1 244445 456788888887765322     235689999999996432221 122  235


Q ss_pred             HHHHHHHHhcCCcEEEEchHHHHHHHHhCC
Q 033165           82 IALLKQLDSLRKKVLGICFGHQVRAITVFS  111 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg  111 (126)
                      .+.|+++.+.++|++|||-|+|+|++.+-.
T Consensus       312 ~~~i~~~~~~g~~i~aiCgG~~~L~~~i~d  341 (451)
T PRK01077        312 RASIRAAAAAGKPIYAECGGLMYLGESLED  341 (451)
T ss_pred             HHHHHHHHHcCCCEEEEcHHHHHHHhhhcC
Confidence            678888888999999999999999998843

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=98.81  E-value=1.8e-08  Score=81.60  Aligned_cols=92  Identities=14%  Similarity=0.117  Sum_probs=62.9

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH--HHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI--CKL   81 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~--~~~   81 (126)
                      .||+|+.-..-      ++ -|.+++ +.|++.|.++..+++..+     +++.++|+|+|+||....+.. .|.  ..+
T Consensus       245 ~~Iava~d~af------nF-y~~~~~-~~L~~~g~~~~~~~~~~d-----~~l~~~d~l~ipGG~~~~~~~-~l~~~~~~  310 (449)
T TIGR00379       245 VRIAVAQDQAF------NF-YYQDNL-DALTHNAAELVPFSPLED-----TELPDVDAVYIGGGFPELFAE-ELSQNQAL  310 (449)
T ss_pred             cEEEEEechhh------ce-eHHHHH-HHHHHCCCEEEEECCccC-----CCCCCCCEEEeCCcHHHHHHH-HHHhhhHH
Confidence            47888875321      11 123444 457778888887765322     235589999999996433221 232  236


Q ss_pred             HHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           82 IALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      .+.|+++.+++.|++|+|-|+|+|++.+
T Consensus       311 ~~~i~~~~~~G~pv~g~CgG~~~L~~~i  338 (449)
T TIGR00379       311 RDSIKTFIHQGLPIYGECGGLMYLSQSL  338 (449)
T ss_pred             HHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence            6778888889999999999999999988

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=98.80  E-value=6.6e-08  Score=85.93  Aligned_cols=95  Identities=13%  Similarity=0.197  Sum_probs=67.9

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC---------CCCCCcCEEEEcCCCCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD---------DDFGSYDGYVITGSCNDAHG   73 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~---------~~~~~~d~iii~G~~~~~~~   73 (126)
                      ++|++|+.....+.+..         ...+|++.|++...++..+- ....         ..+.++++|+++||.+-- |
T Consensus       977 kpkvaIl~~pGtNce~d---------~a~Af~~aG~~~~~v~~~dl-~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyG-D 1045 (1239)
T TIGR01857       977 KPRVVIPVFPGTNSEYD---------SAKAFEKEGAEVNLVIFRNL-NEEALVESVETMVDEIDKSQILMLPGGFSAG-D 1045 (1239)
T ss_pred             CCeEEEEECCCCCCHHH---------HHHHHHHcCCceEEEEEecC-cccccccchhhhhcccccCcEEEEcCccCcc-c
Confidence            57999999998876432         45678789988877765421 0111         257899999999997532 2


Q ss_pred             Cc----hHH------HHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           74 ND----VWI------CKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        74 ~~----~~~------~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      ..    .|+      ..+++-++++++++.++||||.|+|+|.+.
T Consensus      1046 ~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857      1046 EPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKS 1090 (1239)
T ss_pred             ccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHc
Confidence            11    353      245666777778899999999999999984

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>TIGR01001 metA homoserine O-succinyltransferase

Probab=98.80  E-value=6.6e-08  Score=74.27  Aligned_cols=112  Identities=14%  Similarity=0.205  Sum_probs=77.5

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe--EEEEEccCC---CCCC---------CC--CCCCcCEEEEcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET--WDVFHVARG---EFPD---------DD--DFGSYDGYVITG   66 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~---~~p~---------~~--~~~~~d~iii~G   66 (126)
                      .+||+||...+....++.       .|.++|.....+  ++.+++..-   ..+.         .+  .-..|||+||+|
T Consensus        35 pL~I~ILNLMP~K~~TE~-------Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITG  107 (300)
T TIGR01001        35 PLEILILNLMPKKIETEN-------QFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITG  107 (300)
T ss_pred             ceeEEEEecCCccHHHHH-------HHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcC
Confidence            479999999999865543       477888666555  455554321   0010         01  126899999999


Q ss_pred             CCCC--CCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCC-c-cccCCcccc
Q 033165           67 SCND--AHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFS-S-HINASKIAG  121 (126)
Q Consensus        67 ~~~~--~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg-~-v~~~~~~~g  121 (126)
                      .|-.  .+++.++..++.+++..+.+.-..+|.||||+|+-...+-| + ....+|++|
T Consensus       108 APvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfG  166 (300)
T TIGR01001       108 APVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEKLSG  166 (300)
T ss_pred             CCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCceEE
Confidence            9854  35666777888888888877889999999999995555544 3 334677777

The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=98.80  E-value=9.7e-09  Score=73.85  Aligned_cols=89  Identities=22%  Similarity=0.287  Sum_probs=59.7

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC-CeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG-ETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      |||+||-.+....+       +    .+++++.+ .++..++-     |  +++++.|++|||||.+......-....+.
T Consensus         1 m~IGVLalQG~v~E-------H----~~~l~~~~~~e~~~Vk~-----~--~dL~~~d~LIiPGGESTTi~rL~~~~gl~   62 (194)
T COG0311           1 MKIGVLALQGAVEE-------H----LEALEKAGGAEVVEVKR-----P--EDLEGVDGLIIPGGESTTIGRLLKRYGLL   62 (194)
T ss_pred             CeEEEEEecccHHH-------H----HHHHHhhcCCceEEEcC-----H--HHhccCcEEEecCccHHHHHHHHHHcCcH
Confidence            68999988887532       1    24555663 55544441     2  36789999999999764422111111245


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVF  110 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~G  110 (126)
                      +-|+++.+.++|++|.|.|+-+||+-.-
T Consensus        63 e~l~~~~~~G~Pv~GTCAGlIlLakei~   90 (194)
T COG0311          63 EPLREFIADGLPVFGTCAGLILLAKEIL   90 (194)
T ss_pred             HHHHHHHHcCCceEEechhhhhhhhhhc
Confidence            6678888889999999999999996443

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.79  E-value=7e-08  Score=86.23  Aligned_cols=96  Identities=16%  Similarity=0.183  Sum_probs=67.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC--CCCc-hHH-
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA--HGND-VWI-   78 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~--~~~~-~~~-   78 (126)
                      ++|++|+.....+.+..         ...+|+..|++...++..+- ......+++|++|+++||.+--  .+.. -|. 
T Consensus      1037 ~pkVaVl~~pGtN~~~e---------~~~Af~~aGf~~~~V~~~dl-~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~ 1106 (1307)
T PLN03206       1037 KPKVAIIREEGSNGDRE---------MAAAFYAAGFEPWDVTMSDL-LNGRISLDDFRGIVFVGGFSYADVLDSAKGWAG 1106 (1307)
T ss_pred             CCeEEEEECCCCCCHHH---------HHHHHHHcCCceEEEEeeec-ccccccccceeEEEEcCcCCCccccchHHHHHH
Confidence            57999999988876432         45678888988876665421 1222358899999999997421  1111 354 


Q ss_pred             -----HHHHHHHHHHH-hcCCcEEEEchHHHHHHHH
Q 033165           79 -----CKLIALLKQLD-SLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        79 -----~~~~~~i~~~~-~~~~PvlGIC~G~Q~la~~  108 (126)
                           ..+++.+++++ +.+.++||||.|+|+|.+.
T Consensus      1107 ~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206       1107 SIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred             HHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHc
Confidence                 34566677777 4589999999999999984

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=98.78  E-value=8.1e-08  Score=86.04  Aligned_cols=96  Identities=16%  Similarity=0.165  Sum_probs=68.1

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-----hH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-----VW   77 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-----~~   77 (126)
                      ++|++|+.....+.+..         +..+|...|++...++..+- .....++++|++|+++||.+  |.+.     .|
T Consensus      1055 ~p~vail~~pG~N~~~e---------~~~Af~~aGf~~~~v~~~dl-~~~~~~l~~~~~lv~~GGFS--ygD~lgsg~~~ 1122 (1310)
T TIGR01735      1055 RPKVAILREQGVNGDRE---------MAAAFDRAGFEAWDVHMSDL-LAGRVHLDEFRGLAACGGFS--YGDVLGAGKGW 1122 (1310)
T ss_pred             CceEEEEECCCCCCHHH---------HHHHHHHhCCCcEEEEEecc-ccCCcchhheeEEEEcCCCC--CccchhHHHHH
Confidence            47999999888875422         45678888988777765421 12223588999999999964  2322     35


Q ss_pred             HH------HHHHHHHHHH-hcCCcEEEEchHHHHHHHHhC
Q 033165           78 IC------KLIALLKQLD-SLRKKVLGICFGHQVRAITVF  110 (126)
Q Consensus        78 ~~------~~~~~i~~~~-~~~~PvlGIC~G~Q~la~~~G  110 (126)
                      ..      .+++.+++++ +.+.++||||.|+|+|...+|
T Consensus      1123 a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~g 1162 (1310)
T TIGR01735      1123 AKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLE 1162 (1310)
T ss_pred             HHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhC
Confidence            43      4566777777 678999999999999994343

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.75  E-value=1.2e-07  Score=85.02  Aligned_cols=94  Identities=18%  Similarity=0.219  Sum_probs=67.9

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-----hH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-----VW   77 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-----~~   77 (126)
                      ++|++|+.....+.+..         ...+|+..|++...++..+- ......+.+|++++++||.+.  .+.     .|
T Consensus      1035 ~pkv~il~~pG~N~~~e---------~~~Af~~aG~~~~~v~~~dl-~~~~~~l~~~~~l~~~GGFS~--gD~lgsg~~~ 1102 (1290)
T PRK05297       1035 RPKVAILREQGVNSHVE---------MAAAFDRAGFDAIDVHMSDL-LAGRVTLEDFKGLVACGGFSY--GDVLGAGEGW 1102 (1290)
T ss_pred             CCeEEEEECCCCCCHHH---------HHHHHHHcCCCeEEEEeecC-cCCCCChhhCcEEEECCccCC--cccchHHHHH
Confidence            46999999988876422         45678889988877765421 122235899999999999642  332     25


Q ss_pred             HH------HHHHHHHHHH-hcCCcEEEEchHHHHHHHH
Q 033165           78 IC------KLIALLKQLD-SLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        78 ~~------~~~~~i~~~~-~~~~PvlGIC~G~Q~la~~  108 (126)
                      ..      .+++.+++++ +.+.++||||.|+|+|.+.
T Consensus      1103 a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297       1103 AKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred             HHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHh
Confidence            54      3466677766 5789999999999999994

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=98.73  E-value=1.3e-07  Score=67.45  Aligned_cols=95  Identities=25%  Similarity=0.313  Sum_probs=62.6

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC----------------------C--CCC---CCCC-
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG----------------------E--FPD---DDDF-   56 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~----------------------~--~p~---~~~~-   56 (126)
                      ||+|+-.+...+.      ++.. ..+.|++.|.+++++.+..+                      .  ++.   .+++ 
T Consensus         1 kv~il~~~g~~~~------e~~~-p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~   73 (180)
T cd03169           1 KILILTGDFVEDY------EVMV-PFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVD   73 (180)
T ss_pred             CEEEEeCCCccHH------HHHH-HHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCC
Confidence            6778776665432      1222 34577788888888865422                      0  100   1122 


Q ss_pred             -CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           57 -GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        57 -~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                       .+||+|+|+||+....  ......+.++|+++.++++|+.|||.|.++|+.+
T Consensus        74 ~~~~D~liv~GG~~~~~--~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a  124 (180)
T cd03169          74 PDDYDALVIPGGRAPEY--LRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA  124 (180)
T ss_pred             HhHCCEEEEcCCCChhh--hccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence             3789999999963211  1112457788999999999999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=98.73  E-value=1.4e-08  Score=71.60  Aligned_cols=55  Identities=13%  Similarity=0.088  Sum_probs=43.7

Q ss_pred             CCCCcCEEEEcCCCCCCCCCchHH--HHHHHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165           55 DFGSYDGYVITGSCNDAHGNDVWI--CKLIALLKQLDSLRKKVLGICFGHQVRAITVF  110 (126)
Q Consensus        55 ~~~~~d~iii~G~~~~~~~~~~~~--~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~G  110 (126)
                      .+.++|+|+|+||....++ ..|.  ..+.+.|+++.++++||+|+|-|+|+|++.+=
T Consensus         4 ~~~~~D~i~lpGg~pe~~~-~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~   60 (158)
T PF07685_consen    4 LPPDADGIYLPGGYPELFA-LELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII   60 (158)
T ss_pred             CCCCCCEEEECCCcHHHHH-HHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence            4578999999999644432 2333  34678899999999999999999999999885

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.70  E-value=9.3e-08  Score=57.80  Aligned_cols=77  Identities=32%  Similarity=0.531  Sum_probs=54.6

Q ss_pred             HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHH
Q 033165           28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVR  105 (126)
Q Consensus        28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~l  105 (126)
                      .+.+.+++.+.+++++..............++|++|++|++...... .+.....+++.+..++++|++|+|.|.|++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~   92 (92)
T cd03128          16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDL-AWDEALLALLREAAAAGKPVLGICLGAQLL   92 (92)
T ss_pred             cHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhh-ccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence            35567778888888887654321111246789999999997655332 134567777888877889999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=98.70  E-value=4.4e-08  Score=79.94  Aligned_cols=54  Identities=19%  Similarity=0.233  Sum_probs=42.2

Q ss_pred             CCCCcCEEEEcCCCCCCCCCchHHHH--HHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           55 DFGSYDGYVITGSCNDAHGNDVWICK--LIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        55 ~~~~~d~iii~G~~~~~~~~~~~~~~--~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      ++.++|+|+++||....+ +..|..+  +.+.|+++.+.+.|++|||-|+|+|++.+
T Consensus       281 ~l~~~d~lilpGg~~~~~-~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~i  336 (475)
T TIGR00313       281 SLTGCDAVIIPGSKSTIA-DLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKEL  336 (475)
T ss_pred             ccccCCEEEECCcchHHH-HHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhhh
Confidence            466899999999963322 2345444  56778888888999999999999999976

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=98.68  E-value=2.8e-07  Score=64.56  Aligned_cols=95  Identities=25%  Similarity=0.234  Sum_probs=63.0

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc-CCC---------C-CC--CCCC--CCcCEEEEcCCCC
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA-RGE---------F-PD--DDDF--GSYDGYVITGSCN   69 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~---------~-p~--~~~~--~~~d~iii~G~~~   69 (126)
                      ||+|+..+.-...      ++.. +.+.|+..+.+++++.+. ...         + ++  .++.  .+||+|+|+||+.
T Consensus         1 ~v~il~~~gf~~~------e~~~-~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~   73 (165)
T cd03134           1 KVAILAADGFEDV------ELTY-PLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTN   73 (165)
T ss_pred             CEEEEcCCCchHH------HHHH-HHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCC
Confidence            6788877665432      1222 345677889998888655 221         1 11  0112  3689999999973


Q ss_pred             CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                       . +.......+.++|+++.++++|+.+||.|.++|+++
T Consensus        74 -~-~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~a  110 (165)
T cd03134          74 -P-DKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISA  110 (165)
T ss_pred             -h-hhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence             2 111112457889999999999999999999999874

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=98.67  E-value=9.9e-08  Score=71.25  Aligned_cols=66  Identities=15%  Similarity=0.180  Sum_probs=47.8

Q ss_pred             CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh----CCccccCCccccc
Q 033165           56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITV----FSSHINASKIAGT  122 (126)
Q Consensus        56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~----Gg~v~~~~~~~g~  122 (126)
                      .++||+|+||||.....+ ....+.+.++++++.+.++|+.+||.|-++|+.+.    |..+.+.+++-++
T Consensus        92 ~~dYDav~iPGG~g~~~d-l~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~  161 (231)
T cd03147          92 PDDYGIFFVAGGHGTLFD-FPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGF  161 (231)
T ss_pred             HhhCcEEEECCCCchhhh-cccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEee
Confidence            468999999999654322 22235678889999999999999999999999872    3244444444444

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=98.66  E-value=2.3e-07  Score=65.01  Aligned_cols=95  Identities=25%  Similarity=0.272  Sum_probs=61.6

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC--------C-CC--CCCC--CCcCEEEEcCCCCCC
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE--------F-PD--DDDF--GSYDGYVITGSCNDA   71 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~--------~-p~--~~~~--~~~d~iii~G~~~~~   71 (126)
                      ||+|+..+.-.+.      ++.. ..+.|.+.|.+++++......        + ++  .+++  .+||+|+++||+.. 
T Consensus         1 ~v~il~~~g~~~~------e~~~-~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~-   72 (166)
T TIGR01382         1 KLLVLTTDEFEDS------ELLY-PLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAP-   72 (166)
T ss_pred             CEEEEecCCchHH------HHHH-HHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCH-
Confidence            6778776665432      1122 346677788888777643211        1 00  1112  36999999999642 


Q ss_pred             CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           72 HGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        72 ~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                       ........+.++|+++.++++|+.+||.|.++|+++
T Consensus        73 -~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a  108 (166)
T TIGR01382        73 -EYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISA  108 (166)
T ss_pred             -HHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence             111112457888999999999999999999999985

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=98.66  E-value=3.7e-08  Score=79.54  Aligned_cols=91  Identities=21%  Similarity=0.212  Sum_probs=62.8

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--H
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--L   81 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--~   81 (126)
                      .||+|..-..-.      | -|.+++ ++|++. .++..+.+-.++     .+.++|+|+|+||....++  .|+..  .
T Consensus       234 ~~iavA~D~AF~------F-yY~enl-~~L~~~-aelv~fSPl~~~-----~lp~~D~l~lpGG~~e~~~--~~L~~n~~  297 (433)
T PRK13896        234 PTVAVARDAAFC------F-RYPATI-ERLRER-ADVVTFSPVAGD-----PLPDCDGVYLPGGYPELHA--DALADSPA  297 (433)
T ss_pred             CeEEEEEcCccc------e-eCHHHH-HHHHhc-CcEEEEcCCCCC-----CCCCCCEEEeCCCchhhHH--HHHHhCCc
Confidence            477777532221      1 267777 467777 788877764332     3457999999999744322  34443  3


Q ss_pred             HHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165           82 IALLKQLDSLRKKVLGICFGHQVRAITVF  110 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~G  110 (126)
                      .+-|+++.+++.|++|+|-|+|+|++.+-
T Consensus       298 ~~~i~~~~~~G~pi~aeCGG~q~L~~~i~  326 (433)
T PRK13896        298 LDELADRAADGLPVLGECGGLMALAESLT  326 (433)
T ss_pred             HHHHHHHHHCCCcEEEEehHHHHhhcccc
Confidence            46788888899999999999999999883

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=98.64  E-value=3.5e-07  Score=65.53  Aligned_cols=99  Identities=25%  Similarity=0.228  Sum_probs=66.5

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC--CC----------C--CCCCC--CCcCEEEEcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG--EF----------P--DDDDF--GSYDGYVITG   66 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~----------p--~~~~~--~~~d~iii~G   66 (126)
                      ++|++|+........      ++... .+.|++.+.++++..+...  ..          +  ..+..  ++||++++||
T Consensus         2 ~~~i~i~~~~g~e~~------E~~~p-~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipG   74 (188)
T COG0693           2 MKKIAILLADGFEDL------ELIVP-YDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPG   74 (188)
T ss_pred             CceeEEEecCcceeh------hHhHH-HHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECC
Confidence            468888877665431      22222 3577888887776655431  00          0  01123  4999999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           67 SCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      |...+....++ ..+.++++++.+.++||.+||.|.++|+.+-
T Consensus        75 G~~~~~~~~~~-~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag  116 (188)
T COG0693          75 GDHGPEYLRPD-PDLLAFVRDFYANGKPVAAICHGPAVLAAAG  116 (188)
T ss_pred             CccchhhccCc-HHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence            94443222233 6788999999999999999999999998854

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=98.63  E-value=2.1e-07  Score=68.80  Aligned_cols=81  Identities=16%  Similarity=0.203  Sum_probs=56.3

Q ss_pred             HHHHhhCCCeEEEEEccCCC-----------C------------------CCCC--CCCCcCEEEEcCCCCCC---CC--
Q 033165           30 VRMLAEEGETWDVFHVARGE-----------F------------------PDDD--DFGSYDGYVITGSCNDA---HG--   73 (126)
Q Consensus        30 ~~~l~~~g~~~~~~~~~~~~-----------~------------------p~~~--~~~~~d~iii~G~~~~~---~~--   73 (126)
                      .+.|++.|+++++..+..+.           .                  ...+  ++++||+|+||||....   .|  
T Consensus        23 ~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~~  102 (213)
T cd03133          23 LLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDFA  102 (213)
T ss_pred             HHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhhc
Confidence            46788899999988763210           0                  0001  24579999999995432   11  


Q ss_pred             ---CchH-HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165           74 ---NDVW-ICKLIALLKQLDSLRKKVLGICFGHQVRAITVF  110 (126)
Q Consensus        74 ---~~~~-~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~G  110 (126)
                         +..+ .+.+.++++++.++++|+.+||.|.++|+.+.+
T Consensus       103 ~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~  143 (213)
T cd03133         103 VKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG  143 (213)
T ss_pred             ccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence               0001 145788999999999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=98.62  E-value=2.6e-07  Score=74.31  Aligned_cols=49  Identities=31%  Similarity=0.469  Sum_probs=36.6

Q ss_pred             CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      +...|||++|||...- .    ++.....++.+.+.++|+||||+|||+-+.-+
T Consensus       361 l~~adGilvPGGFG~R-G----veG~i~Aak~ARen~iP~LGiCLGmQ~AvIEf  409 (585)
T KOG2387|consen  361 LKSADGILVPGGFGDR-G----VEGKILAAKWARENKIPFLGICLGMQLAVIEF  409 (585)
T ss_pred             hccCCeEEeCCccccc-c----hhHHHHHHHHHHhcCCCeEeeehhhhHHHHHH
Confidence            4569999999997542 2    23344556777788999999999999876544

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=98.61  E-value=2.1e-08  Score=72.45  Aligned_cols=74  Identities=27%  Similarity=0.350  Sum_probs=47.7

Q ss_pred             HHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcC-CcEEEEchHHHHHHHHh
Q 033165           31 RMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLR-KKVLGICFGHQVRAITV  109 (126)
Q Consensus        31 ~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~-~PvlGIC~G~Q~la~~~  109 (126)
                      +.|++.+.+...++-     |  +++++.||+|||||.+......-....+.+-|+++.+.+ +|++|.|.|+-+||+..
T Consensus        13 ~~l~~lg~~~~~Vr~-----~--~dL~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v   85 (188)
T PF01174_consen   13 RMLERLGAEVVEVRT-----P--EDLEGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKEV   85 (188)
T ss_dssp             HHHHHTTSEEEEE-S-----G--GGGTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEEE
T ss_pred             HHHHHcCCCeEEeCC-----H--HHHccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhhh
Confidence            567778887755441     2  367889999999996543221111123667788888887 99999999999999854


Q ss_pred             CC
Q 033165          110 FS  111 (126)
Q Consensus       110 Gg  111 (126)
                      .+
T Consensus        86 ~~   87 (188)
T PF01174_consen   86 EG   87 (188)
T ss_dssp             CS
T ss_pred             hh
Confidence            43

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=98.59  E-value=7.4e-07  Score=61.11  Aligned_cols=98  Identities=14%  Similarity=0.133  Sum_probs=65.8

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC---------CC--CCCC--CCcCEEEEcCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF---------PD--DDDF--GSYDGYVITGSCN   69 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~---------p~--~~~~--~~~d~iii~G~~~   69 (126)
                      .+||+||-.+.-...      ++. .+.+.|+..+.+++++.+..+..         +.  .++.  .+||+++|+||..
T Consensus         1 ~~~v~ill~~g~~~~------e~~-~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~   73 (142)
T cd03132           1 GRKVGILVADGVDAA------ELS-ALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAE   73 (142)
T ss_pred             CCEEEEEEcCCcCHH------HHH-HHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCcc
Confidence            368999988766432      122 24567778899988887542211         11  1122  3699999999864


Q ss_pred             CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .... ......+.+++++..++++|+.+||-|..+|+++
T Consensus        74 ~~~~-~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~a  111 (142)
T cd03132          74 AAFA-LAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAA  111 (142)
T ss_pred             CHHH-HccChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence            3210 0112457889999999999999999999999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>PRK04155 chaperone protein HchA; Provisional

Probab=98.58  E-value=4.9e-07  Score=69.56  Aligned_cols=52  Identities=13%  Similarity=0.086  Sum_probs=41.5

Q ss_pred             CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .++||+|+||||..... +.+..+.+.++++++.++++||.+||.|.++|..+
T Consensus       145 ~~dYDaV~iPGG~g~~~-dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a  196 (287)
T PRK04155        145 DSDYAAVFIPGGHGALI-GLPESEDVAAALQWALDNDRFIITLCHGPAALLAA  196 (287)
T ss_pred             cccccEEEECCCCchHH-HHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence            46899999999965432 23334568889999999999999999999988774

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=98.55  E-value=8.3e-07  Score=79.27  Aligned_cols=95  Identities=17%  Similarity=0.169  Sum_probs=68.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-----hH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-----VW   77 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-----~~   77 (126)
                      +.|++|+.....+.+..         +..+|...|++...++..+  +-....+++|++|+++||.+  +++.     -|
T Consensus       929 ~p~VaIl~~pG~N~~~e---------~~~Af~~aGf~~~~v~~~d--l~~~~~l~~f~glv~~Ggfs--y~D~lgsg~~~  995 (1202)
T TIGR01739       929 RHQVAVLLLPGQSVPHG---------LLAALTNAGFDPRIVSITE--LKKTDFLDTFSGLIIGGASG--TLDSEVGARAL  995 (1202)
T ss_pred             CCeEEEEeCCCCCCHHH---------HHHHHHHcCCceEEEEecc--CCCCCchhheEEEEEcCcCC--CCccchHHHHH
Confidence            46899999988875422         4578888999888777643  21222478999999998864  3332     35


Q ss_pred             H------HHHHHHHHHHH-hcCCcEEEEch-HHHHHHHHhCC
Q 033165           78 I------CKLIALLKQLD-SLRKKVLGICF-GHQVRAITVFS  111 (126)
Q Consensus        78 ~------~~~~~~i~~~~-~~~~PvlGIC~-G~Q~la~~~Gg  111 (126)
                      .      ..+++.+++++ +.+.++||||. |+|+|++ +|-
T Consensus       996 a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~-lg~ 1036 (1202)
T TIGR01739       996 AAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLA-LNI 1036 (1202)
T ss_pred             HHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHH-cCC
Confidence            5      45667788887 45999999998 9999998 443

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PHA03366 FGAM-synthase; Provisional

Probab=98.47  E-value=2.4e-06  Score=76.82  Aligned_cols=93  Identities=16%  Similarity=0.080  Sum_probs=67.2

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc----hHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND----VWI   78 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~----~~~   78 (126)
                      ++|++|+.....+.+..         +..+|..+|+++..++..+- .... .+++|++|+++||.+.. |..    .|.
T Consensus      1028 ~prVaIl~~pG~N~~~e---------~~~Af~~aGf~~~~v~~~dL-~~~~-~l~~f~glv~~GGFS~g-D~l~~~~~~a 1095 (1304)
T PHA03366       1028 RHRVAVLLLPGCPGPHA---------LLAAFTNAGFDPYPVSIEEL-KDGT-FLDEFSGLVIGGSSGAE-DSYTGARAAV 1095 (1304)
T ss_pred             CCeEEEEECCCCCCHHH---------HHHHHHHcCCceEEEEeecC-CCCC-ccccceEEEEcCCCCCc-ccccHHHHHH
Confidence            57999999988875422         45778889998877776421 1222 38999999999997532 221    354


Q ss_pred             ------HHHHHHHHHHHh-cCCcEEEEch-HHHHHHH
Q 033165           79 ------CKLIALLKQLDS-LRKKVLGICF-GHQVRAI  107 (126)
Q Consensus        79 ------~~~~~~i~~~~~-~~~PvlGIC~-G~Q~la~  107 (126)
                            .++++.++++++ .+.++||||. |+|+|++
T Consensus      1096 ~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~ 1132 (1304)
T PHA03366       1096 AALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFA 1132 (1304)
T ss_pred             HHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHH
Confidence                  345567777774 5999999998 9999998

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=98.41  E-value=5.8e-06  Score=59.59  Aligned_cols=98  Identities=18%  Similarity=0.164  Sum_probs=61.3

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-C----------C-CC--CCC--CCCcCEEEEcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-E----------F-PD--DDD--FGSYDGYVITG   66 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~----------~-p~--~~~--~~~~d~iii~G   66 (126)
                      ++||+|+-...-.+.      ++.. ..+.|++.+.++++..+... .          + ++  .++  .++||.|+|+|
T Consensus         2 ~~~~~il~~~g~~~~------e~~~-p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipG   74 (196)
T PRK11574          2 SASALVCLAPGSEET------EAVT-TIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPG   74 (196)
T ss_pred             CceEEEEeCCCcchh------hHhH-HHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECC
Confidence            368999987665432      1222 23566667887777654311 0          0 11  112  24799999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           67 SCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      |...... ..-.+.+.++++++.++++++.+||-|..+|...
T Consensus        75 G~~~~~~-~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~  115 (196)
T PRK11574         75 GIKGAEC-FRDSPLLVETVRQFHRSGRIVAAICAAPATVLVP  115 (196)
T ss_pred             CCchhhh-hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHh
Confidence            8633211 1111457889999999999999999999976543

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=98.40  E-value=1.6e-06  Score=70.51  Aligned_cols=90  Identities=17%  Similarity=0.179  Sum_probs=57.0

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--   80 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--   80 (126)
                      .+|+|+....-.     ||.+|     +.|+. .+..+.++.+.       +++.+.|.+||||+.... .+..|.++  
T Consensus       252 i~Iav~~lp~is-----NFtD~-----dpL~~~~~v~v~~v~~~-------~~l~~~dlvIlPGsk~t~-~DL~~lr~~g  313 (486)
T COG1492         252 IRIAVIRLPRIS-----NFTDF-----DPLRAEPDVRVRFVKPG-------SDLRDADLVILPGSKNTI-ADLKILREGG  313 (486)
T ss_pred             eEEEEecCCCcc-----ccccc-----hhhhcCCCeEEEEeccC-------CCCCCCCEEEeCCCcccH-HHHHHHHHcC
Confidence            367777665442     33322     23332 35556555521       256679999999996543 44555543  


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCC
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFS  111 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg  111 (126)
                      +.+-+.+..+.+.|++|||-|+|+|.+.+--
T Consensus       314 ~d~~i~~~~~~~~~viGICGG~QmLG~~i~D  344 (486)
T COG1492         314 MDEKILEYARKGGDVIGICGGYQMLGRRLKD  344 (486)
T ss_pred             HHHHHHHHHhCCCCEEEEcchHHhhhhhhcC
Confidence            3334555666799999999999999987755

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=98.28  E-value=1e-06  Score=59.21  Aligned_cols=47  Identities=17%  Similarity=0.133  Sum_probs=33.0

Q ss_pred             CCcCEEEEcCCCCCCCCCchHHH-HHHHHHHHHHhcCCcEEEEchHHHHH
Q 033165           57 GSYDGYVITGSCNDAHGNDVWIC-KLIALLKQLDSLRKKVLGICFGHQVR  105 (126)
Q Consensus        57 ~~~d~iii~G~~~~~~~~~~~~~-~~~~~i~~~~~~~~PvlGIC~G~Q~l  105 (126)
                      .++|.+|+|||.....  ...+. .-.+.|++.++.++|+||||+|.-+.
T Consensus        43 ~~ad~lVlPGGa~~~~--~~~L~~~g~~~i~~~v~~g~p~LGIClGAy~a   90 (114)
T cd03144          43 SKTALLVVPGGADLPY--CRALNGKGNRRIRNFVRNGGNYLGICAGAYLA   90 (114)
T ss_pred             hCCCEEEECCCChHHH--HHHHHhhCcHHHHHHHHCCCcEEEEecCccce
Confidence            4899999999743321  11111 11567888888899999999998765

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=98.28  E-value=1.9e-06  Score=64.53  Aligned_cols=100  Identities=15%  Similarity=0.117  Sum_probs=70.2

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHH-HH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWIC-KL   81 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~-~~   81 (126)
                      .+||+++-+-....    .+..|...+.+.|++.|.+++.++..++  + .+.+.+.|+|+++||.....- ..|.+ .+
T Consensus        31 ~~~v~fIPtAs~~~----~~~~y~~~~~~af~~lG~~v~~l~~~~d--~-~~~l~~ad~I~v~GGnt~~l~-~~l~~~gl  102 (233)
T PRK05282         31 RRKAVFIPYAGVTQ----SWDDYTAKVAEALAPLGIEVTGIHRVAD--P-VAAIENAEAIFVGGGNTFQLL-KQLYERGL  102 (233)
T ss_pred             CCeEEEECCCCCCC----CHHHHHHHHHHHHHHCCCEEEEeccchh--h-HHHHhcCCEEEECCccHHHHH-HHHHHCCc
Confidence            46899997755431    3445788888999999998877664422  1 134789999999999321100 12222 25


Q ss_pred             HHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165           82 IALLKQLDSLRKKVLGICFGHQVRAITVF  110 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~G  110 (126)
                      .+.|++++++++|+.|.|.|+-+++....
T Consensus       103 ~~~l~~~~~~G~~~~G~SAGAii~~~~i~  131 (233)
T PRK05282        103 LAPIREAVKNGTPYIGWSAGANVAGPTIR  131 (233)
T ss_pred             HHHHHHHHHCCCEEEEECHHHHhhhccce
Confidence            67788888899999999999999888665

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=98.27  E-value=6.5e-06  Score=64.72  Aligned_cols=85  Identities=19%  Similarity=0.178  Sum_probs=58.0

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCC-CCCCchHHHHHHHH
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCND-AHGNDVWICKLIAL   84 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~-~~~~~~~~~~~~~~   84 (126)
                      +-+|+.+..+  ++        .+.++++..|+++..+..     |.  ++.+.|.+|+||...- +.-+.-....+.+-
T Consensus         4 v~~ld~~agn--~~--------si~nal~hlg~~i~~v~~-----P~--DI~~a~rLIfPGVGnfg~~~D~L~~~Gf~ep   66 (541)
T KOG0623|consen    4 VTLLDYGAGN--VR--------SIRNALRHLGFSIKDVQT-----PG--DILNADRLIFPGVGNFGPAMDVLNRTGFAEP   66 (541)
T ss_pred             EEEEecCCcc--HH--------HHHHHHHhcCceeeeccC-----ch--hhccCceEeecCcccchHHHHHHhhhhhHHH
Confidence            4566666653  22        367888899988876541     33  5789999999997421 11111122335566


Q ss_pred             HHHHHhcCCcEEEEchHHHHHHH
Q 033165           85 LKQLDSLRKKVLGICFGHQVRAI  107 (126)
Q Consensus        85 i~~~~~~~~PvlGIC~G~Q~la~  107 (126)
                      |++..+.++|++|||.|.|+|..
T Consensus        67 lr~YiesgkPfmgicvGlQaLF~   89 (541)
T KOG0623|consen   67 LRKYIESGKPFMGICVGLQALFD   89 (541)
T ss_pred             HHHHHhcCCCeEeehhhHHHHhc
Confidence            88888899999999999999965

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=98.26  E-value=8.3e-06  Score=57.66  Aligned_cols=49  Identities=22%  Similarity=0.206  Sum_probs=39.6

Q ss_pred             CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .+||.|+|+||+......   .+.+.++|+++.++++++.+||-|.++|+++
T Consensus        59 ~~~D~l~I~Gg~~~~~~~---~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  107 (170)
T cd03140          59 EDYDLLILPGGDSWDNPE---APDLAGLVRQALKQGKPVAAICGATLALARA  107 (170)
T ss_pred             hHccEEEEcCCcccccCC---cHHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence            579999999996422211   2457889999988999999999999999995

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.24  E-value=2.3e-05  Score=55.86  Aligned_cols=52  Identities=19%  Similarity=0.212  Sum_probs=41.2

Q ss_pred             CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           55 DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        55 ~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      +..++|.|+|+||.....  ....+.+.++|++..++++++.+||-|.++|+++
T Consensus        61 ~~~~~D~liipGg~~~~~--~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a  112 (187)
T cd03137          61 ALAAADTVIVPGGPDVDG--RPPPPALLAALRRAAARGARVASVCTGAFVLAEA  112 (187)
T ss_pred             ccCCCCEEEECCCccccc--ccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence            456899999999854321  1123568889999988999999999999999985

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=98.22  E-value=9.8e-06  Score=56.26  Aligned_cols=79  Identities=29%  Similarity=0.303  Sum_probs=54.5

Q ss_pred             HHHHHhhCCCeEEEEEccCCCC----------CC--CCC--CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCc
Q 033165           29 FVRMLAEEGETWDVFHVARGEF----------PD--DDD--FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKK   94 (126)
Q Consensus        29 ~~~~l~~~g~~~~~~~~~~~~~----------p~--~~~--~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~P   94 (126)
                      +.+.|+..+.+++++.+..+..          |+  .++  ..+||.++|+||+.... .....+.+.++++++.+++++
T Consensus        17 ~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~-~~~~~~~l~~~l~~~~~~~~~   95 (163)
T cd03135          17 PVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQ-NLADNEKLIKLLKEFNAKGKL   95 (163)
T ss_pred             HHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHH-HHHhCHHHHHHHHHHHHcCCE
Confidence            4567778888888776432110          11  112  26899999999862221 111125578899999999999


Q ss_pred             EEEEchHHHHHHHH
Q 033165           95 VLGICFGHQVRAIT  108 (126)
Q Consensus        95 vlGIC~G~Q~la~~  108 (126)
                      +.+||-|..+|+++
T Consensus        96 i~~ic~g~~~La~a  109 (163)
T cd03135          96 IAAICAAPAVLAKA  109 (163)
T ss_pred             EEEEchhHHHHHHc
Confidence            99999999999996

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>TIGR01383 not_thiJ DJ-1 family protein

Probab=98.14  E-value=2.5e-05  Score=55.20  Aligned_cols=96  Identities=25%  Similarity=0.221  Sum_probs=59.2

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE--EEccCC-CC---------CC--CCC--CCCcCEEEEcCCC
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV--FHVARG-EF---------PD--DDD--FGSYDGYVITGSC   68 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~--~~~~~~-~~---------p~--~~~--~~~~d~iii~G~~   68 (126)
                      ||+|+-.+.-...      ++.. ..+.|+..|.++++  +.+..+ ..         +.  .++  ..+||.|+|+||.
T Consensus         1 ~v~il~~~gf~~~------e~~~-~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~   73 (179)
T TIGR01383         1 KVLVPLAPGFEEM------EAVI-TVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGM   73 (179)
T ss_pred             CEEEEecCCchHH------HHHH-HHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCc
Confidence            6777766554321      1222 34667777766664  433211 10         11  011  4579999999985


Q ss_pred             CCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           69 NDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        69 ~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .... ...-.+.+.++|++..++++++.+||-|..+|+++
T Consensus        74 ~~~~-~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a  112 (179)
T TIGR01383        74 PGAE-NLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA  112 (179)
T ss_pred             hHHH-HHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence            3211 11112457889999999999999999999999986

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=98.13  E-value=5.8e-06  Score=61.80  Aligned_cols=51  Identities=16%  Similarity=0.115  Sum_probs=40.6

Q ss_pred             CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      ++||+|++|||..... +.+-...+.++++++.++++|+.+||.|.++|..+
T Consensus        95 ~dYDav~iPGG~g~~~-dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a  145 (232)
T cd03148          95 SEYAAVFIPGGHGALI-GIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA  145 (232)
T ss_pred             hhceEEEECCCCCChh-hcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence            5899999999965432 23333567888999999999999999999988764

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=98.10  E-value=9e-07  Score=61.27  Aligned_cols=52  Identities=27%  Similarity=0.371  Sum_probs=39.3

Q ss_pred             CCCcCEEEEcCCCCCCCCCch-HHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           56 FGSYDGYVITGSCNDAHGNDV-WICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        56 ~~~~d~iii~G~~~~~~~~~~-~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      ..+||+|+||||.... +... ..+.+.++++++.+.++|+.+||.|..+|+.+
T Consensus        35 ~~~yDalilpGG~~~~-~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~   87 (147)
T PF01965_consen   35 PSDYDALILPGGHGGA-DDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA   87 (147)
T ss_dssp             GGGESEEEEE-BTHHH-HHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred             hhhCCEEEECCCCchh-hhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence            4579999999996532 1111 13668899999999999999999999999886

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=98.09  E-value=4.5e-06  Score=61.78  Aligned_cols=98  Identities=23%  Similarity=0.246  Sum_probs=63.7

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHH--HHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCCCCchH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFG--VFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHGNDVW   77 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~--~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~~~~~~   77 (126)
                      |.+++|+-|.-     ++-..||+-..  .+++..+.+|+.+++..+...+ +|    .+.+|.+++.||..  +.+.--
T Consensus         1 ~~eL~I~~lyp-----dlmntYGD~GNil~Lr~ra~~rgi~v~i~~vsl~d~~~----~~~~Dl~~~GGgqD--~eQ~i~   69 (250)
T COG3442           1 MYELTIGHLYP-----DLMNTYGDNGNILVLRQRAEKRGIKVEIVEVSLTDTFP----DDSYDLYFLGGGQD--YEQEIA   69 (250)
T ss_pred             CceEEeeeech-----hhhhccCCCCceeeehHHHHhcCCceEEEEeecCCCCC----cccccEEEecCchH--HHHHHH
Confidence            45556665532     33445555333  3456677889999998886443 32    26799988888842  222111


Q ss_pred             ---HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           78 ---ICKLIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        78 ---~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                         .....+-+++.++.++|+|.||-|.|+|.+.+
T Consensus        70 t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~yY  104 (250)
T COG3442          70 TRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQYY  104 (250)
T ss_pred             hhhhccccHHHHHHHhcCCcEEEEccchhhcccee
Confidence               12233568888889999999999999998754

>PRK11249 katE hydroperoxidase II; Provisional

Probab=98.05  E-value=2.4e-05  Score=66.95  Aligned_cols=98  Identities=15%  Similarity=0.117  Sum_probs=66.9

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC--------CCCCCC-----CCCcCEEEEcCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE--------FPDDDD-----FGSYDGYVITGSCN   69 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~--------~p~~~~-----~~~~d~iii~G~~~   69 (126)
                      .+||+||..+.......      . -+.+.|+..|..+.++.+..+.        ++....     ...||+|+|+||..
T Consensus       597 gRKIaILVaDG~d~~ev------~-~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~  669 (752)
T PRK11249        597 GRKVAILLNDGVDAADL------L-AILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKA  669 (752)
T ss_pred             ccEEEEEecCCCCHHHH------H-HHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCch
Confidence            47999999887654321      1 3567788889988887653211        111111     12699999999864


Q ss_pred             CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .+ ....-...+.++|+++.+.+++|.+||-|.++|+.+
T Consensus       670 ~~-~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA  707 (752)
T PRK11249        670 NI-ADLADNGDARYYLLEAYKHLKPIALAGDARKLKAAL  707 (752)
T ss_pred             hH-HHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence            32 111112457889999999999999999999999974

>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]

Probab=98.03  E-value=4.8e-05  Score=57.58  Aligned_cols=112  Identities=17%  Similarity=0.254  Sum_probs=70.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE--EEccCC---CCCCC-----------CCCCCcCEEEEcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV--FHVARG---EFPDD-----------DDFGSYDGYVITG   66 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~--~~~~~~---~~p~~-----------~~~~~~d~iii~G   66 (126)
                      ..||+||...+..-..+       ..+.++|...-.++++  .+...-   .-|..           ..-.+|||+||+|
T Consensus        35 PL~IlilNLMP~Ki~TE-------~Q~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tfeeVk~~~FDG~IiTG  107 (307)
T COG1897          35 PLKILILNLMPKKIETE-------TQILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTFEEVKDQKFDGLIITG  107 (307)
T ss_pred             cceeeeeecCchhHHHH-------HHHHHHhcCCCceEEEEEEEecCcCCCCCcHHHHHHHhhcHHHHhhcccCceEEeC
Confidence            36999999998764332       2466777665555543  333211   01110           0226899999999


Q ss_pred             CCCCC--CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCC--ccccCCcccc
Q 033165           67 SCNDA--HGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFS--SHINASKIAG  121 (126)
Q Consensus        67 ~~~~~--~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg--~v~~~~~~~g  121 (126)
                      .|...  +++..+.+++.+++......-.-.|-||||.|.--..+-|  +....+|..|
T Consensus       108 APve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~Kl~G  166 (307)
T COG1897         108 APVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEKLSG  166 (307)
T ss_pred             CcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccchhhhc
Confidence            98543  4555566667777666654557899999999987776655  3333455554

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=98.00  E-value=1.3e-05  Score=57.28  Aligned_cols=70  Identities=19%  Similarity=0.136  Sum_probs=47.5

Q ss_pred             CCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcC-CcEEEEchHHHHHHHHhCC
Q 033165           37 GETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLR-KKVLGICFGHQVRAITVFS  111 (126)
Q Consensus        37 g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~-~PvlGIC~G~Q~la~~~Gg  111 (126)
                      ++++++..+..     ++++.+.|++|||||.+....-..-...+.+-+..++... +|++|.|.||-+|...+-+
T Consensus        40 ~Ik~~~~tVKT-----~~D~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ql~n  110 (226)
T KOG3210|consen   40 EIKLSVMTVKT-----KNDLAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQLSN  110 (226)
T ss_pred             eEEEEEEeecC-----HHHHhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhhhcC
Confidence            45556666532     2368899999999997654322222333556666666654 9999999999999876644

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.97  E-value=2.1e-05  Score=56.49  Aligned_cols=54  Identities=22%  Similarity=0.140  Sum_probs=41.4

Q ss_pred             CCCCcCEEEEcCCCCCCCC-CchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           55 DFGSYDGYVITGSCNDAHG-NDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        55 ~~~~~d~iii~G~~~~~~~-~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      +.++||.|+||||...... .....+.+.++|++..++++++.+||-|..+|+.+
T Consensus        66 ~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  120 (195)
T cd03138          66 DVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA  120 (195)
T ss_pred             ccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence            4568999999998643210 12223567889999989999999999999999984

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=97.95  E-value=1.2e-05  Score=59.50  Aligned_cols=52  Identities=21%  Similarity=0.190  Sum_probs=40.9

Q ss_pred             CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      +++||+|+|+||+....+ ..-.+.+.++++++.++++++.+||.|.++|+.+
T Consensus        88 ~~~~dal~ipGG~~~~~~-l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a  139 (221)
T cd03141          88 PSDYDAIFIPGGHGPMFD-LPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV  139 (221)
T ss_pred             HhHceEEEECCCcccccc-cccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence            358999999999643221 1112568889999999999999999999999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=97.94  E-value=0.00028  Score=54.52  Aligned_cols=101  Identities=18%  Similarity=0.144  Sum_probs=60.9

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh---CCCeEEEEEccCCC--------C-C--CCCCCCCcCEEEEcCC
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE---EGETWDVFHVARGE--------F-P--DDDDFGSYDGYVITGS   67 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~--------~-p--~~~~~~~~d~iii~G~   67 (126)
                      .+++|+|+-...-...-   .....+.|...-..   ..++++++.+..+.        + +  ..++.+++|.||||||
T Consensus         8 ~~~~v~ill~~gf~~~~---~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~~v~ss~g~~i~~d~~~~~~~~~D~livpGg   84 (322)
T PRK09393          8 HNHLVVALAYDGLCTFE---FGCAVEIFGLPRPELGVDWYRFAVAAVEPGPLRAAGGITVVADGGLELLDRADTIVIPGW   84 (322)
T ss_pred             cccEEEEEEcCCCChhH---HHHHHHHHHHHHhhcCCCceEEEEEECCCCceEeCCCcEEeCCCCccccCCCCEEEECCC
Confidence            34599999888775421   11222333211011   11355555442110        0 0  1124578999999998


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           68 CNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        68 ~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .... .  .....+.++|++..++++++.+||-|..+|+++
T Consensus        85 ~~~~-~--~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a  122 (322)
T PRK09393         85 RGPD-A--PVPEPLLEALRAAHARGARLCSICSGVFVLAAA  122 (322)
T ss_pred             Cccc-c--cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence            5321 1  123568889999988999999999999999984

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=97.90  E-value=7.6e-05  Score=52.84  Aligned_cols=51  Identities=18%  Similarity=0.188  Sum_probs=39.6

Q ss_pred             CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      ...||+|+|+||....  .....+.+.++|++..++++++.++|-|..+|+++
T Consensus        60 ~~~~D~lvipgg~~~~--~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a  110 (183)
T cd03139          60 PPDLDVLLVPGGGGTR--ALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA  110 (183)
T ss_pred             CCCCCEEEECCCcchh--hhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence            4589999999995322  11112557888999988999999999999999884

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=97.83  E-value=6.5e-05  Score=54.92  Aligned_cols=98  Identities=15%  Similarity=0.080  Sum_probs=67.2

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-CCCC-CCCCCCcCEEEEcCCCCCCCCCc-hHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-EFPD-DDDFGSYDGYVITGSCNDAHGND-VWIC   79 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~p~-~~~~~~~d~iii~G~~~~~~~~~-~~~~   79 (126)
                      ..||+++-+....+      ..|..++.+.+++.|.+...+..... ..+. .+.+...|+|+++||..  ..-. .|..
T Consensus        29 ~~~i~~iptA~~~~------~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~--~~~~~~l~~  100 (210)
T cd03129          29 GARVLFIPTASGDR------DEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQ--LRLLSVLRE  100 (210)
T ss_pred             CCeEEEEeCCCCCh------HHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcH--HHHHHHHHh
Confidence            46899998877642      24667788899999988876664321 0011 12468999999999832  1111 3333


Q ss_pred             H-HHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           80 K-LIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        80 ~-~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      . ..+.|++..++++|+.|+|.|+.+++..
T Consensus       101 t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~  130 (210)
T cd03129         101 TPLLDAILKRVARGVVIGGTSAGAAVMGET  130 (210)
T ss_pred             CChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence            3 5555666666899999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.63  E-value=0.00021  Score=50.92  Aligned_cols=51  Identities=20%  Similarity=0.134  Sum_probs=40.2

Q ss_pred             CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           55 DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        55 ~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      +..++|.|+||||......   ..+.+.++|++..++++.+.+||-|..+|+++
T Consensus        61 ~~~~~D~liipgg~~~~~~---~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a  111 (185)
T cd03136          61 DAPPLDYLFVVGGLGARRA---VTPALLAWLRRAARRGVALGGIDTGAFLLARA  111 (185)
T ss_pred             ccCCCCEEEEeCCCCcccc---CCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence            3468999999998543211   12457888999888999999999999999984

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=97.61  E-value=9.3e-05  Score=59.74  Aligned_cols=93  Identities=17%  Similarity=0.169  Sum_probs=66.2

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCCC-CchHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHG-NDVWICKL   81 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~~-~~~~~~~~   81 (126)
                      .||+|.+-..-+      | -|.+++ ++|++.|.++..+.|-.++ +|     ++.|+|.|+||--..+- +...-...
T Consensus       246 ~rIAVA~D~AF~------F-yY~~nl-~~Lr~~GAelv~FSPL~D~~lP-----~~~D~vYlgGGYPElfA~~L~~n~~~  312 (451)
T COG1797         246 VRIAVARDAAFN------F-YYPENL-ELLREAGAELVFFSPLADEELP-----PDVDAVYLGGGYPELFAEELSANESM  312 (451)
T ss_pred             ceEEEEecchhc------c-ccHHHH-HHHHHCCCEEEEeCCcCCCCCC-----CCCCEEEeCCCChHHHHHHHhhCHHH
Confidence            478887543321      1 256666 6788999999999876553 33     35999999999422221 11222446


Q ss_pred             HHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           82 IALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      ++.|+++.+.++|++|=|-|+.-|++.+
T Consensus       313 ~~~i~~~~~~G~piyaECGGlMYL~~~l  340 (451)
T COG1797         313 RRAIKAFAAAGKPIYAECGGLMYLGESL  340 (451)
T ss_pred             HHHHHHHHHcCCceEEecccceeehhhe
Confidence            7788999899999999999999999887

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=97.56  E-value=0.0001  Score=51.64  Aligned_cols=52  Identities=21%  Similarity=0.208  Sum_probs=39.3

Q ss_pred             CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           55 DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        55 ~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      +..++|.|||+|++..  .....-+.+.+++++..++++++.+||-|..+|+++
T Consensus        58 ~~~~~D~lvvpg~~~~--~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  109 (166)
T PF13278_consen   58 DAPDFDILVVPGGPGF--DAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA  109 (166)
T ss_dssp             CCSCCSEEEEE-STTH--HHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred             hcccCCEEEeCCCCCc--hhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence            4678999999999761  111112557788888888899999999999999996

...

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=97.39  E-value=0.00065  Score=50.72  Aligned_cols=96  Identities=21%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC----------CCC----CCCCCCcCEEEEcC
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE----------FPD----DDDFGSYDGYVITG   66 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----------~p~----~~~~~~~d~iii~G   66 (126)
                      |.+++++|+-.+..++. +     +.-. .+.|++.|+++++..+...+          +|+    +..-+.||.|||||
T Consensus         3 ~~~~~vlil~~~g~Ee~-E-----~ivp-~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPG   75 (247)
T KOG2764|consen    3 ASKKAVLILCADGMEEY-E-----FIVP-IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPG   75 (247)
T ss_pred             cccccEEEEccCCccee-E-----EEEe-HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecC
Confidence            44566777766444321 0     1111 36778888888877654321          111    11127899999999


Q ss_pred             C-CCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHH
Q 033165           67 S-CNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVR  105 (126)
Q Consensus        67 ~-~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~l  105 (126)
                      | +...  .......+.+++++..+.++++..||.|--++
T Consensus        76 G~~g~e--~L~~~~~v~~lvK~q~~~gkLIaaICaap~~a  113 (247)
T KOG2764|consen   76 GLPGAE--TLSECEKVVDLVKEQAESGKLIAAICAAPLTA  113 (247)
T ss_pred             Cchhhh--hhhhcHHHHHHHHHHHhcCCeEEEeecchHHH
Confidence            9 5432  12223456778888888999999999997443

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=97.16  E-value=0.00077  Score=49.87  Aligned_cols=96  Identities=14%  Similarity=0.118  Sum_probs=65.5

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCc-hHHH-H
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGND-VWIC-K   80 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~-~~~~-~   80 (126)
                      +||+.+=+-...    +.++.|..-.++.|++.|.+++-.++....... ...+.+.|.|.+.||  +.+.-. .|.+ .
T Consensus        33 ~~i~FIPtAs~~----~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGG--NTF~LL~~lke~g  106 (224)
T COG3340          33 KTIAFIPTASVD----SEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGG--NTFNLLQELKETG  106 (224)
T ss_pred             ceEEEEecCccc----cchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCc--hHHHHHHHHHHhC
Confidence            477777444432    345678999999999999998877766432111 113456999999999  333211 3333 2


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHH
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVR  105 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~l  105 (126)
                      +.++|++.+++++|.+|+-.|.-+-
T Consensus       107 ld~iIr~~vk~G~~YiG~SAGA~ia  131 (224)
T COG3340         107 LDDIIRERVKAGTPYIGWSAGANIA  131 (224)
T ss_pred             cHHHHHHHHHcCCceEEeccCceee
Confidence            7788999999999999987776543

>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]

Probab=97.10  E-value=0.0022  Score=55.96  Aligned_cols=95  Identities=16%  Similarity=0.206  Sum_probs=59.9

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC--CCC-chHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA--HGN-DVWIC   79 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~--~~~-~~~~~   79 (126)
                      .+|++||.-+..+...+         +...|..+|++..-++.. +-+.....+++|-||+.+||.+-.  -+. ..|..
T Consensus      1058 ~PkVAilREeGvNg~rE---------Ma~af~~AgF~~~DVtmt-DlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAa 1127 (1320)
T KOG1907|consen 1058 APKVAILREEGVNGDRE---------MAAAFYAAGFETVDVTMT-DLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAA 1127 (1320)
T ss_pred             CCceEEeeccccccHHH---------HHHHHHHcCCceeeeeee-hhhcCceeHhHhcceeeecCcchHhhhccccchhh
Confidence            46999998888764322         445677788765433332 112222367899999999997421  111 14543


Q ss_pred             H------HHHHHHHHHh-cCCcEEEEchHHHHHHH
Q 033165           80 K------LIALLKQLDS-LRKKVLGICFGHQVRAI  107 (126)
Q Consensus        80 ~------~~~~i~~~~~-~~~PvlGIC~G~Q~la~  107 (126)
                      .      ++.-+.++.. .+.--||||.|.|++++
T Consensus      1128 sil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~ 1162 (1320)
T KOG1907|consen 1128 SILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSR 1162 (1320)
T ss_pred             heeeChhHHHHHHHHhcCCCceeeecccHhHHHHH
Confidence            2      3333444433 47889999999999998

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=97.02  E-value=0.0038  Score=49.73  Aligned_cols=51  Identities=16%  Similarity=0.101  Sum_probs=37.0

Q ss_pred             CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .+++.+|+|||...++... .-..-.+.||++++.+.-.||||.|...-+..
T Consensus        48 ~~~~LlV~PGG~d~~y~~~-l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~~   98 (367)
T PF09825_consen   48 SKCALLVMPGGADLPYCRS-LNGEGNRRIRQFVENGGGYLGICAGAYYASSR   98 (367)
T ss_pred             cCCcEEEECCCcchHHHHh-hChHHHHHHHHHHHcCCcEEEECcchhhhcce
Confidence            6799999999975443211 11223567889999999999999999876653

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>TIGR02069 cyanophycinase cyanophycinase

Probab=96.84  E-value=0.0047  Score=46.68  Aligned_cols=98  Identities=13%  Similarity=0.099  Sum_probs=64.8

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC-eEEEEEccCCC-C--CC-CCCCCCcCEEEEcCCCCCCCCCchHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE-TWDVFHVARGE-F--PD-DDDFGSYDGYVITGSCNDAHGNDVWI   78 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~-~--p~-~~~~~~~d~iii~G~~~~~~~~~~~~   78 (126)
                      .||+++-+-...+      ..|...+.+.|++.|. +++++.+...+ .  |. .+.+...|+|+++||...  .-..++
T Consensus        29 ~rI~~iptAS~~~------~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~--~l~~~l  100 (250)
T TIGR02069        29 AIIVIITSASEEP------REVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQL--RITSLL  100 (250)
T ss_pred             ceEEEEeCCCCCh------HHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHH--HHHHHH
Confidence            5899997765433      2355667888888888 46766664211 0  11 124678999999999321  111111


Q ss_pred             H--HHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           79 C--KLIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        79 ~--~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      .  .+.+.|+++++++.|+.|.-.|+-+++...
T Consensus       101 ~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~~~  133 (250)
T TIGR02069       101 GDTPLLDRLRKRVHEGIILGGTSAGAAVMSDTM  133 (250)
T ss_pred             cCCcHHHHHHHHHHcCCeEEEccHHHHhcccce
Confidence            1  255778888888999999999999886544

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=96.64  E-value=0.0042  Score=45.84  Aligned_cols=98  Identities=17%  Similarity=0.170  Sum_probs=64.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe-EEEEEccCCCC---CC-CCCCCCcCEEEEcCCCCCCCCCc-h
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET-WDVFHVARGEF---PD-DDDFGSYDGYVITGSCNDAHGND-V   76 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~---p~-~~~~~~~d~iii~G~~~~~~~~~-~   76 (126)
                      ..||+++-+....+      ..+...+.+.+++.|.+ ++++.....+-   |. .+.+.+.|+|+++||...  .-. .
T Consensus        29 ~~~i~~iptA~~~~------~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~--~~~~~  100 (217)
T cd03145          29 GARIVVIPAASEEP------AEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQL--RITSA  100 (217)
T ss_pred             CCcEEEEeCCCcCh------hHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHH--HHHHH
Confidence            46899998877643      13455677788888874 45554432110   11 124678999999999321  111 1


Q ss_pred             HHH-HHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           77 WIC-KLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        77 ~~~-~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      |.. .+.+.|+++++++.|+.|.-.|.-+++..
T Consensus       101 l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~  133 (217)
T cd03145         101 LGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT  133 (217)
T ss_pred             HcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence            222 35677888888999999999999998875

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.62  E-value=0.018  Score=41.23  Aligned_cols=60  Identities=15%  Similarity=0.071  Sum_probs=45.2

Q ss_pred             CCCCcCEEEEcCCCCCCCCCch---------HHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165           55 DFGSYDGYVITGSCNDAHGNDV---------WICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI  114 (126)
Q Consensus        55 ~~~~~d~iii~G~~~~~~~~~~---------~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~  114 (126)
                      +.+++|++|+|||..-...-..         -..++.++.+.+.+.++|+--||..--++...+|..+.
T Consensus        82 ~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~~  150 (217)
T COG3155          82 DAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPLR  150 (217)
T ss_pred             CHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCcee
Confidence            3468999999999754321111         12457778888888999999999999999999987543

>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=96.50  E-value=0.027  Score=43.92  Aligned_cols=87  Identities=15%  Similarity=0.220  Sum_probs=52.9

Q ss_pred             CCCCe-EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC----C------------C-CCCCCCcCEE
Q 033165            1 MGGKK-FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF----P------------D-DDDFGSYDGY   62 (126)
Q Consensus         1 M~~~k-i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~----p------------~-~~~~~~~d~i   62 (126)
                      |+++| |+|+.+.......     +....+.++|++.|.++.+.......+    +            . .+..++.|.+
T Consensus         2 ~~~~~~I~iv~~~~~~~~~-----~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   76 (306)
T PRK03372          2 MTASRRVLLVAHTGRDEAT-----EAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELV   76 (306)
T ss_pred             CCCccEEEEEecCCCHHHH-----HHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEE
Confidence            67655 9999775543321     134457788888888876654221110    0            0 1112458999


Q ss_pred             EEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165           63 VITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        63 ii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~  102 (126)
                      |..||-.          .+....+.+...++|+|||=.|.
T Consensus        77 i~lGGDG----------T~L~aar~~~~~~~PilGIN~G~  106 (306)
T PRK03372         77 LVLGGDG----------TILRAAELARAADVPVLGVNLGH  106 (306)
T ss_pred             EEEcCCH----------HHHHHHHHhccCCCcEEEEecCC
Confidence            9999932          24445555555789999998774

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.37  E-value=0.0011  Score=46.32  Aligned_cols=81  Identities=12%  Similarity=0.108  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCchHHHH--HHHHHHHHHhcCCcEEEEchH
Q 033165           25 YFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGNDVWICK--LIALLKQLDSLRKKVLGICFG  101 (126)
Q Consensus        25 ~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~~~~~~--~~~~i~~~~~~~~PvlGIC~G  101 (126)
                      |...+.+.|++.|++++.+++...+.+. .+.+..+|+|+++||-  +..-..++++  +.+.|++++++++++.|+-.|
T Consensus         1 y~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~--~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAG   78 (154)
T PF03575_consen    1 YVEKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGD--TFRLLRQLKETGLDEAIREAYRKGGVIIGTSAG   78 (154)
T ss_dssp             HHHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S---HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHH
T ss_pred             CHHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCC--HHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChH
Confidence            4456788899999887776654321000 1235789999999992  2111122222  667899988899999999999


Q ss_pred             HHHHHH
Q 033165          102 HQVRAI  107 (126)
Q Consensus       102 ~Q~la~  107 (126)
                      +-+++.
T Consensus        79 A~i~~~   84 (154)
T PF03575_consen   79 AMILGP   84 (154)
T ss_dssp             HHCTSS
T ss_pred             HhhccC
Confidence            977533

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=96.36  E-value=0.061  Score=41.80  Aligned_cols=85  Identities=15%  Similarity=0.076  Sum_probs=52.4

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCCCCCcCEEEEcCCCCCCCCCch
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDDFGSYDGYVITGSCNDAHGNDV   76 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~~~~~d~iii~G~~~~~~~~~~   76 (126)
                      |.++|++++.+.... ...+    ....+.++|++.|.++.+........+.    ......+|.+|+.||-.       
T Consensus         1 ~~~kkv~lI~n~~~~-~~~~----~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG-------   68 (305)
T PRK02645          1 MQLKQVIIAYKAGSS-QAKE----AAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDG-------   68 (305)
T ss_pred             CCcCEEEEEEeCCCH-HHHH----HHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcH-------
Confidence            889999999875432 2222    2344667788889887765432111110    11124689999999932       


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEch
Q 033165           77 WICKLIALLKQLDSLRKKVLGICF  100 (126)
Q Consensus        77 ~~~~~~~~i~~~~~~~~PvlGIC~  100 (126)
                         .+...++.+...++|++||=.
T Consensus        69 ---T~l~~~~~~~~~~~pv~gin~   89 (305)
T PRK02645         69 ---TVLAAARHLAPHDIPILSVNV   89 (305)
T ss_pred             ---HHHHHHHHhccCCCCEEEEec
Confidence               244455555556899999987

>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]

Probab=96.27  E-value=0.0027  Score=48.15  Aligned_cols=101  Identities=16%  Similarity=0.282  Sum_probs=56.4

Q ss_pred             CeEEEEEcCCCch-HHHHh-hCC--HHHHHHHHHhhCCCeEEEEEccCCCCCCC---CCCCCcCEEEEcCCCCCCCCCch
Q 033165            4 KKFAVLLCAEDSE-YVKKK-YGG--YFGVFVRMLAEEGETWDVFHVARGEFPDD---DDFGSYDGYVITGSCNDAHGNDV   76 (126)
Q Consensus         4 ~ki~Il~~~~~~~-~~~~~-~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~p~~---~~~~~~d~iii~G~~~~~~~~~~   76 (126)
                      +-|+||.+-.+.. ...+| ++.  -..-++.+++..|+.+--+...  + |..   ..++-..|||++||...-.+   
T Consensus        53 PvIGIL~hpg~g~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~n--e-pEe~lfqklelvNGviftGGwak~~d---  126 (340)
T KOG1559|consen   53 PVIGILSHPGDGASGRLKNATGRSYIAASYVKLAESGGARVIPLIYN--E-PEEILFQKLELVNGVIFTGGWAKRGD---  126 (340)
T ss_pred             ceeEEeccCCCCccceeccccCcchhHHHHHHHHHcCCceEEEEecC--C-cHHHHHHHHHHhceeEecCccccccc---
Confidence            4467776654431 11122 332  1223456666778766544332  1 321   12467899999999543322   


Q ss_pred             HHHHHHHHHHHHHhc-----CCcEEEEchHHHHHHHHhC
Q 033165           77 WICKLIALLKQLDSL-----RKKVLGICFGHQVRAITVF  110 (126)
Q Consensus        77 ~~~~~~~~i~~~~~~-----~~PvlGIC~G~Q~la~~~G  110 (126)
                      +.+-...+....+++     ..||.|||+|+.+|.....
T Consensus       127 Y~~vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiIS  165 (340)
T KOG1559|consen  127 YFEVVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIIS  165 (340)
T ss_pred             HHHHHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHh
Confidence            333333444444442     4899999999999987654

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=95.61  E-value=0.15  Score=36.36  Aligned_cols=87  Identities=20%  Similarity=0.189  Sum_probs=56.1

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      ||+||+....+-. .++    -...+...|.+.|.++++.++..-..|   .+++||+|||.-+-.    ...|-+.+..
T Consensus         1 Mk~LIlYstr~Gq-T~k----IA~~iA~~L~e~g~qvdi~dl~~~~~~---~l~~ydavVIgAsI~----~~h~~~~~~~   68 (175)
T COG4635           1 MKTLILYSTRDGQ-TRK----IAEYIASHLRESGIQVDIQDLHAVEEP---ALEDYDAVVIGASIR----YGHFHEAVQS   68 (175)
T ss_pred             CceEEEEecCCCc-HHH----HHHHHHHHhhhcCCeeeeeehhhhhcc---ChhhCceEEEecchh----hhhhHHHHHH
Confidence            5888887655432 111    233467788889999999987643222   578999999975522    1234455556


Q ss_pred             HHHHHHh--cCCcEEEEchHH
Q 033165           84 LLKQLDS--LRKKVLGICFGH  102 (126)
Q Consensus        84 ~i~~~~~--~~~PvlGIC~G~  102 (126)
                      ++++..+  ..+|..-+|.+.
T Consensus        69 Fv~k~~e~L~~kP~A~f~vnl   89 (175)
T COG4635          69 FVKKHAEALSTKPSAFFSVNL   89 (175)
T ss_pred             HHHHHHHHHhcCCceEEEeeh
Confidence            6655444  478888888764

>PRK11104 hemG protoporphyrinogen oxidase; Provisional

Probab=95.57  E-value=0.22  Score=35.58  Aligned_cols=85  Identities=24%  Similarity=0.251  Sum_probs=46.8

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      ||++|+.....- .+++    +...+.+.|+. |.+++++++.+..  . .++.+||.||+.++-..  ...  .....+
T Consensus         1 MkilIvY~S~~G-~T~~----iA~~Ia~~l~~-g~~v~~~~~~~~~--~-~~l~~yD~vIlGspi~~--G~~--~~~~~~   67 (177)
T PRK11104          1 MKTLILYSSRDG-QTRK----IASYIASELKE-GIQCDVVNLHRIE--E-PDLSDYDRVVIGASIRY--GHF--HSALYK   67 (177)
T ss_pred             CcEEEEEECCCC-hHHH----HHHHHHHHhCC-CCeEEEEEhhhcC--c-cCHHHCCEEEEECcccc--CCc--CHHHHH
Confidence            478888765432 2221    34455666665 7788888865422  1 25788999777654321  111  123334


Q ss_pred             HHHHHHh--cCCcEEEEchH
Q 033165           84 LLKQLDS--LRKKVLGICFG  101 (126)
Q Consensus        84 ~i~~~~~--~~~PvlGIC~G  101 (126)
                      ++++...  .++|+.-.|.|
T Consensus        68 fl~~~~~~l~~K~v~~F~v~   87 (177)
T PRK11104         68 FVKKHATQLNQMPSAFFSVN   87 (177)
T ss_pred             HHHHHHHHhCCCeEEEEEec
Confidence            4433221  47787777766

>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.50  E-value=0.18  Score=39.07  Aligned_cols=85  Identities=15%  Similarity=0.122  Sum_probs=51.4

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC--C-----CCCCC-CCcCEEEEcCCCCCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF--P-----DDDDF-GSYDGYVITGSCNDAHGN   74 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--p-----~~~~~-~~~d~iii~G~~~~~~~~   74 (126)
                      ++||+|+-+...... .    .....+.++|++.|.++.+-......+  +     ..+++ +++|.+|+.||-.     
T Consensus         5 ~~~i~iv~~~~~~~~-~----~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDG-----   74 (292)
T PRK03378          5 FKCIGIVGHPRHPTA-L----TTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDG-----   74 (292)
T ss_pred             CCEEEEEEeCCCHHH-H----HHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcH-----
Confidence            567999977655432 2    134457778888887765533111100  0     10122 3689999999932     


Q ss_pred             chHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165           75 DVWICKLIALLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        75 ~~~~~~~~~~i~~~~~~~~PvlGIC~G~  102 (126)
                           .+....+.+...++|++||=.|.
T Consensus        75 -----T~L~aa~~~~~~~~Pilgin~G~   97 (292)
T PRK03378         75 -----NMLGAARVLARYDIKVIGINRGN   97 (292)
T ss_pred             -----HHHHHHHHhcCCCCeEEEEECCC
Confidence                 24444555555589999999987

>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional

Probab=95.11  E-value=0.22  Score=38.45  Aligned_cols=86  Identities=16%  Similarity=0.187  Sum_probs=51.5

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-----CCCC--CCCC-CCcCEEEEcCCCCCCCC
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-----EFPD--DDDF-GSYDGYVITGSCNDAHG   73 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-----~~p~--~~~~-~~~d~iii~G~~~~~~~   73 (126)
                      .+++|+|+-+...... .+    ....+.++|++.+.++.+......     .++.  .+++ +.+|.+|..||-.    
T Consensus         4 ~~~~v~iv~~~~~~~~-~e----~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG----   74 (291)
T PRK02155          4 QFKTVALIGRYQTPGI-AE----PLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDG----   74 (291)
T ss_pred             cCCEEEEEecCCCHHH-HH----HHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcH----
Confidence            4567999977655332 21    244567788888877655432110     0110  0122 3689999999932    


Q ss_pred             CchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165           74 NDVWICKLIALLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        74 ~~~~~~~~~~~i~~~~~~~~PvlGIC~G~  102 (126)
                            .+...++.+...++|+|||=.|+
T Consensus        75 ------t~l~~~~~~~~~~~pilGIn~G~   97 (291)
T PRK02155         75 ------TMLGIGRQLAPYGVPLIGINHGR   97 (291)
T ss_pred             ------HHHHHHHHhcCCCCCEEEEcCCC
Confidence                  24455555555689999998886

>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.01  E-value=0.27  Score=38.29  Aligned_cols=84  Identities=15%  Similarity=0.095  Sum_probs=50.8

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC--CC--------------CCCC-CCcCEEEEc
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF--PD--------------DDDF-GSYDGYVIT   65 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--p~--------------~~~~-~~~d~iii~   65 (126)
                      |+||+|+.+.......     .....+.++|++.|.++.+.......+  +.              ...+ ++.|.+|+.
T Consensus         1 m~~igiv~n~~~~~~~-----~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~i   75 (305)
T PRK02649          1 MPKAGIIYNDGKPLAV-----RTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVL   75 (305)
T ss_pred             CCEEEEEEcCCCHHHH-----HHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEE
Confidence            5679999776554321     134457788888888776543211000  00              0112 358999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165           66 GSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG  101 (126)
Q Consensus        66 G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G  101 (126)
                      ||-.          .+....+.+...++|+|||=.|
T Consensus        76 GGDG----------TlL~aar~~~~~~iPilGIN~G  101 (305)
T PRK02649         76 GGDG----------TVLSAARQLAPCGIPLLTINTG  101 (305)
T ss_pred             eCcH----------HHHHHHHHhcCCCCcEEEEeCC
Confidence            9932          3444555555568999999876

>COG4090 Uncharacterized protein conserved in archaea [Function unknown]

Probab=94.99  E-value=0.073  Score=36.67  Aligned_cols=44  Identities=27%  Similarity=0.357  Sum_probs=29.8

Q ss_pred             CCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165           54 DDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF  100 (126)
Q Consensus        54 ~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~  100 (126)
                      ++++..|.+|+.||-+.+.-.. -.++.++++.+.  .++|+.|+||
T Consensus        81 e~~n~aDvvVLlGGLaMP~~gv-~~d~~kel~ee~--~~kkliGvCf  124 (154)
T COG4090          81 EELNSADVVVLLGGLAMPKIGV-TPDDAKELLEEL--GNKKLIGVCF  124 (154)
T ss_pred             cccccccEEEEEcccccCcCCC-CHHHHHHHHHhc--CCCceEEeeH
Confidence            4677899999999976553211 134455556543  4679999997

>PRK06756 flavodoxin; Provisional

Probab=94.92  E-value=0.38  Score=32.89  Aligned_cols=57  Identities=12%  Similarity=0.310  Sum_probs=35.2

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITG   66 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G   66 (126)
                      |+|++|+.....- +++.    ....+.+.+++.|.+++++++.+.  +...++.++|+|++.-
T Consensus         1 mmkv~IiY~S~tG-nTe~----vA~~ia~~l~~~g~~v~~~~~~~~--~~~~~~~~~d~vi~gs   57 (148)
T PRK06756          1 MSKLVMIFASMSG-NTEE----MADHIAGVIRETENEIEVIDIMDS--PEASILEQYDGIILGA   57 (148)
T ss_pred             CceEEEEEECCCc-hHHH----HHHHHHHHHhhcCCeEEEeehhcc--CCHHHHhcCCeEEEEe
Confidence            4699999776442 2221    233455666667888888876432  2223577899987754

>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=94.89  E-value=0.28  Score=38.03  Aligned_cols=87  Identities=17%  Similarity=0.185  Sum_probs=50.5

Q ss_pred             CCC-CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC-------CCCCC-CCcCEEEEcCCCCCC
Q 033165            1 MGG-KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP-------DDDDF-GSYDGYVITGSCNDA   71 (126)
Q Consensus         1 M~~-~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p-------~~~~~-~~~d~iii~G~~~~~   71 (126)
                      |.. +||+|+.+..... ..+    ....+.++|++.+.++.+.......++       ....+ ..+|.+|..||-.  
T Consensus         1 ~~~~~~v~iv~~~~k~~-a~e----~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG--   73 (295)
T PRK01231          1 MPSFRNIGLIGRLGSSS-VVE----TLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDG--   73 (295)
T ss_pred             CCCCCEEEEEecCCCHH-HHH----HHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcH--
Confidence            544 4699987655533 222    233466778888888766542111111       00112 3588999999933  


Q ss_pred             CCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165           72 HGNDVWICKLIALLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        72 ~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~  102 (126)
                              .+....+.+...++|++||=.|+
T Consensus        74 --------t~l~~~~~~~~~~~Pvlgin~G~   96 (295)
T PRK01231         74 --------SLLGAARALARHNVPVLGINRGR   96 (295)
T ss_pred             --------HHHHHHHHhcCCCCCEEEEeCCc
Confidence                    23344455545689999998875

>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=94.80  E-value=0.3  Score=37.82  Aligned_cols=84  Identities=18%  Similarity=0.208  Sum_probs=50.4

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC----------CC---CCCCC-CCcCEEEEcCCCC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE----------FP---DDDDF-GSYDGYVITGSCN   69 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----------~p---~~~~~-~~~d~iii~G~~~   69 (126)
                      |||+|+-+...... .    .....+.++|++.|.++.+-......          .+   ..+.+ +.+|.+|..||-.
T Consensus         1 m~igii~~~~~~~~-~----~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG   75 (292)
T PRK01911          1 MKIAIFGQTYQESA-S----PYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDG   75 (292)
T ss_pred             CEEEEEeCCCCHHH-H----HHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCcH
Confidence            57899876554332 1    23455777888888877654321100          00   00122 3589999999932


Q ss_pred             CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165           70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~  102 (126)
                                .+....+.+...++|+|||=.|.
T Consensus        76 ----------T~L~aa~~~~~~~~PilGIN~G~   98 (292)
T PRK01911         76 ----------TFLRTATYVGNSNIPILGINTGR   98 (292)
T ss_pred             ----------HHHHHHHHhcCCCCCEEEEecCC
Confidence                      24444555555689999998885

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=94.74  E-value=0.13  Score=40.54  Aligned_cols=51  Identities=22%  Similarity=0.211  Sum_probs=38.0

Q ss_pred             CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      ...+|-+++.||-...  ...-...+.++|++..+.+.++.|||-|.-+||++
T Consensus        74 ~~~~~~v~v~~g~~~~--~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a  124 (328)
T COG4977          74 APPIDILPVCGGLGPE--RPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA  124 (328)
T ss_pred             cCcceEEEEecCCCcc--cccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence            3458888886663322  11112558899999999999999999999999985

>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=94.71  E-value=0.38  Score=36.92  Aligned_cols=83  Identities=16%  Similarity=0.155  Sum_probs=50.8

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC---CCCCCC--CCC--CCcCEEEEcCCCCCCCCCch
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR---GEFPDD--DDF--GSYDGYVITGSCNDAHGNDV   76 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~~~p~~--~~~--~~~d~iii~G~~~~~~~~~~   76 (126)
                      |||+|+-+.......     .....+.++|++.+.++.+.....   +.....  ..+  .++|.+|..||-.       
T Consensus         1 m~v~iv~~~~k~~~~-----~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG-------   68 (277)
T PRK03708          1 MRFGIVARRDKEEAL-----KLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG-------   68 (277)
T ss_pred             CEEEEEecCCCHHHH-----HHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH-------
Confidence            589998665553322     134457788888898887753211   111110  011  3689999999932       


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165           77 WICKLIALLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        77 ~~~~~~~~i~~~~~~~~PvlGIC~G~  102 (126)
                         .+.+.++ ....++|++||=.|.
T Consensus        69 ---TlL~a~~-~~~~~~pi~gIn~G~   90 (277)
T PRK03708         69 ---TILRIEH-KTKKDIPILGINMGT   90 (277)
T ss_pred             ---HHHHHHH-hcCCCCeEEEEeCCC
Confidence               2444555 445689999998886

>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=94.50  E-value=0.32  Score=37.55  Aligned_cols=84  Identities=20%  Similarity=0.163  Sum_probs=51.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC--C--CCCCC-CCcCEEEEcCCCCCCCCCchH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF--P--DDDDF-GSYDGYVITGSCNDAHGNDVW   77 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--p--~~~~~-~~~d~iii~G~~~~~~~~~~~   77 (126)
                      ++||+|+-+... . ..    .....+.++|++.+.++.+-......+  +  ..+++ .++|.+|..||-.        
T Consensus        10 ~~~i~ii~~~~~-~-~~----~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG--------   75 (287)
T PRK14077         10 IKKIGLVTRPNV-S-LD----KEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDG--------   75 (287)
T ss_pred             CCEEEEEeCCcH-H-HH----HHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCH--------
Confidence            567999977553 2 22    234456778888887776543211111  1  00122 3689999999932        


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEchHH
Q 033165           78 ICKLIALLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        78 ~~~~~~~i~~~~~~~~PvlGIC~G~  102 (126)
                        .+....+.+...++|+|||=.|.
T Consensus        76 --T~L~aa~~~~~~~~PilGIN~G~   98 (287)
T PRK14077         76 --TLISLCRKAAEYDKFVLGIHAGH   98 (287)
T ss_pred             --HHHHHHHHhcCCCCcEEEEeCCC
Confidence              24445555555689999999887

>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=94.45  E-value=0.57  Score=36.35  Aligned_cols=85  Identities=12%  Similarity=0.208  Sum_probs=51.1

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC----------CCC--CCCCC-CCcCEEEEcCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG----------EFP--DDDDF-GSYDGYVITGSCN   69 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~----------~~p--~~~~~-~~~d~iii~G~~~   69 (126)
                      ++||+|+-+..... ..    .....+.++|++.|.++.+-.....          ..+  ..+++ ...|.+|..||-.
T Consensus         5 ~~~i~ii~~~~~~~-~~----~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDG   79 (296)
T PRK04539          5 FHNIGIVTRPNTPD-IQ----DTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDG   79 (296)
T ss_pred             CCEEEEEecCCCHH-HH----HHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCcH
Confidence            56799997755533 22    2345677888888887765421100          000  00122 3589999999932


Q ss_pred             CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165           70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~  102 (126)
                                .+....+.+...++|++||=.|.
T Consensus        80 ----------T~L~aa~~~~~~~~PilGIN~G~  102 (296)
T PRK04539         80 ----------TFLSVAREIAPRAVPIIGINQGH  102 (296)
T ss_pred             ----------HHHHHHHHhcccCCCEEEEecCC
Confidence                      24444555545689999999886

>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial

Probab=94.15  E-value=0.2  Score=35.36  Aligned_cols=65  Identities=14%  Similarity=0.095  Sum_probs=45.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC---CCCcCEEEEcCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD---FGSYDGYVITGSCND   70 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~---~~~~d~iii~G~~~~   70 (126)
                      +.|++|+-.++...   +.+++-..++..++++.|.++..+.+..++...    ..+   .+++|.||.+||.+.
T Consensus         4 ~~rv~vit~~d~~~---~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~   75 (163)
T TIGR02667         4 PLRIAILTVSDTRT---EEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGF   75 (163)
T ss_pred             ccEEEEEEEeCcCC---ccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence            57999998887642   245677778999999999988777655443210    011   246999999998643

This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.

>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A

Probab=93.96  E-value=0.14  Score=37.30  Aligned_cols=89  Identities=15%  Similarity=0.143  Sum_probs=48.9

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHh-hCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLA-EEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      ||||+-..... ...+.+-.-...+.++++ ..++++++..-. ..+ ..+.|++||.||+.......     +-....+
T Consensus         1 kvLi~~g~~~~-~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~-~~~-~~~~L~~~Dvvv~~~~~~~~-----l~~~~~~   72 (217)
T PF06283_consen    1 KVLIFSGGWSG-YRHDSIPAAKKALAQLLEESEGFEVTVTEDP-DDL-TPENLKGYDVVVFYNTGGDE-----LTDEQRA   72 (217)
T ss_dssp             EEEEEES-SHH-HCSHHHHHHHHHHHHHHHHTTCEEEEECCSG-GCT-SHHCHCT-SEEEEE-SSCCG-----S-HHHHH
T ss_pred             CEEEEeCCcCC-ccCccHHHHHHHHHHHhccCCCEEEEEEeCc-ccC-ChhHhcCCCEEEEECCCCCc-----CCHHHHH
Confidence            67777666210 000111123456777777 567777654421 112 22468999999998664211     2244556


Q ss_pred             HHHHHHhcCCcEEEEchH
Q 033165           84 LLKQLDSLRKKVLGICFG  101 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G  101 (126)
                      .|++.++++++++|+..+
T Consensus        73 al~~~v~~Ggglv~lH~~   90 (217)
T PF06283_consen   73 ALRDYVENGGGLVGLHGA   90 (217)
T ss_dssp             HHHHHHHTT-EEEEEGGG
T ss_pred             HHHHHHHcCCCEEEEccc
Confidence            677888899999999844

>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine

Probab=93.78  E-value=0.38  Score=33.49  Aligned_cols=103  Identities=17%  Similarity=0.250  Sum_probs=57.0

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC---eEEEEEcc-CCCCCCC----CCCCCcCEEEEcCC--CCC
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE---TWDVFHVA-RGEFPDD----DDFGSYDGYVITGS--CND   70 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~--~~~   70 (126)
                      |+..||+|+..+........    ...-..+.|.+.|.   +++++++. ..|+|-.    ..-.+||++|..|-  ...
T Consensus         1 ~~~~ri~IV~s~~n~~i~~~----ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~   76 (144)
T PF00885_consen    1 MSGLRIAIVVSRFNEEITDR----LLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGE   76 (144)
T ss_dssp             -TTEEEEEEEESTTHHHHHH----HHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--S
T ss_pred             CCCCEEEEEEEeccHHHHHH----HHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCC
Confidence            88999999999887543221    12223456666776   77888764 2233321    01257999999983  222


Q ss_pred             CCCCchHHHH--HHHHHHHHHhcCCcE-EEEc---hHHHHHHHH
Q 033165           71 AHGNDVWICK--LIALLKQLDSLRKKV-LGIC---FGHQVRAIT  108 (126)
Q Consensus        71 ~~~~~~~~~~--~~~~i~~~~~~~~Pv-lGIC---~G~Q~la~~  108 (126)
                      . +...++.+  ...+++-.++.++|| +||-   -=-|.+.++
T Consensus        77 T-~H~~~v~~~v~~gl~~lsl~~~~PV~~gvlt~~~~eqa~~R~  119 (144)
T PF00885_consen   77 T-DHFEYVANAVSRGLMDLSLEYGIPVIFGVLTPDTEEQALERA  119 (144)
T ss_dssp             S-THHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSHHHHHHHC
T ss_pred             c-hHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCHHHHHHHh
Confidence            1 22233322  344555557778995 3432   334555554

The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....

>PRK01215 competence damage-inducible protein A; Provisional

Probab=93.67  E-value=0.16  Score=38.77  Aligned_cols=72  Identities=14%  Similarity=0.044  Sum_probs=46.9

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCCCCC
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCNDAHG   73 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~~~~   73 (126)
                      |.++|++|+-.+..-- .-+-++....++.+.+.+.|.++..+.+..++....     .-++.+|.||++||-....+
T Consensus         1 ~~~~~v~Ii~~GdEll-~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~t~d   77 (264)
T PRK01215          1 MDKWFAWIITIGNELL-IGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLGPTYD   77 (264)
T ss_pred             CCCCEEEEEEEChhcc-CCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcCChh
Confidence            8899999999987532 111234566788899999999887665443332110     12346899999999654433

>PRK09271 flavodoxin; Provisional

Probab=93.54  E-value=1.7  Score=30.20  Aligned_cols=59  Identities=12%  Similarity=0.062  Sum_probs=34.0

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC-CCCCCCCCcCEEEEcCC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF-PDDDDFGSYDGYVITGS   67 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-p~~~~~~~~d~iii~G~   67 (126)
                      ||++|+.....- ++++    ....+.+.++..|.+++++++...++ +...++.++|.|+|.-.
T Consensus         1 mkv~IvY~S~tG-nTe~----~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~   60 (160)
T PRK09271          1 MRILLAYASLSG-NTRE----VAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTW   60 (160)
T ss_pred             CeEEEEEEcCCc-hHHH----HHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECc
Confidence            478888765432 2221    23446667777788888776543221 11224567898888654

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=93.34  E-value=0.76  Score=34.42  Aligned_cols=42  Identities=24%  Similarity=0.218  Sum_probs=29.5

Q ss_pred             CCcCEEEEcCCCCCCCCCchHHHHHH----HHHHHHHhcCCcEEEEchHHH
Q 033165           57 GSYDGYVITGSCNDAHGNDVWICKLI----ALLKQLDSLRKKVLGICFGHQ  103 (126)
Q Consensus        57 ~~~d~iii~G~~~~~~~~~~~~~~~~----~~i~~~~~~~~PvlGIC~G~Q  103 (126)
                      +.-..+|+|||..-+|     .+.+.    +.|...++++--.||||.|.-
T Consensus        48 ~~T~lLV~pGGaDlpY-----~~~l~g~g~a~i~~yvk~GG~fLGiCAG~Y   93 (253)
T COG4285          48 ETTLLLVFPGGADLPY-----VQVLQGLGTARIKNYVKEGGNFLGICAGGY   93 (253)
T ss_pred             hceEEEEecCCCCchH-----HHHhcchhhhhHHHHHhcCCeEEEEecccc
Confidence            4567888999965443     33332    446677788999999999864

>PRK06703 flavodoxin; Provisional

Probab=93.01  E-value=1.2  Score=30.51  Aligned_cols=56  Identities=9%  Similarity=0.108  Sum_probs=33.5

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITG   66 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G   66 (126)
                      |+|++|+.....- +.+.    ....+.+.++..|.+++++++.+.+   ..++.++|.|++.-
T Consensus         1 mmkv~IiY~S~tG-nT~~----iA~~ia~~l~~~g~~v~~~~~~~~~---~~~l~~~d~viigs   56 (151)
T PRK06703          1 MAKILIAYASMSG-NTED----IADLIKVSLDAFDHEVVLQEMDGMD---AEELLAYDGIILGS   56 (151)
T ss_pred             CCeEEEEEECCCc-hHHH----HHHHHHHHHHhcCCceEEEehhhCC---HHHHhcCCcEEEEE
Confidence            4588888775442 2111    2334555566678888888764321   12577899888843

>PLN02929 NADH kinase

Probab=92.99  E-value=0.59  Score=36.42  Aligned_cols=62  Identities=19%  Similarity=0.255  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165           25 YFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG  101 (126)
Q Consensus        25 ~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G  101 (126)
                      ....+.++|++.|.++..+.  ..++  .....+.|.+|..||-.          .+....+.+ ..++|++||=.|
T Consensus        35 ~~~~~~~~L~~~gi~~~~v~--r~~~--~~~~~~~Dlvi~lGGDG----------T~L~aa~~~-~~~iPvlGIN~G   96 (301)
T PLN02929         35 TVNFCKDILQQKSVDWECVL--RNEL--SQPIRDVDLVVAVGGDG----------TLLQASHFL-DDSIPVLGVNSD   96 (301)
T ss_pred             HHHHHHHHHHHcCCEEEEee--cccc--ccccCCCCEEEEECCcH----------HHHHHHHHc-CCCCcEEEEECC
Confidence            34457788889999886543  2222  12457899999999932          233344445 568999999888

>cd00886 MogA_MoaB MogA_MoaB family

Probab=92.76  E-value=0.58  Score=32.47  Aligned_cols=66  Identities=15%  Similarity=0.103  Sum_probs=42.4

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-C----CCC--CcCEEEEcCCCCC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-D----DFG--SYDGYVITGSCND   70 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-~----~~~--~~d~iii~G~~~~   70 (126)
                      .|++|+..+.+... -+.+++...++.+++++.|.++..+.+..++.... +    .++  .+|.||.+||.+.
T Consensus         1 ~~~~ii~~~~e~~~-g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~   73 (152)
T cd00886           1 LRAAVLTVSDTRSA-GEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGL   73 (152)
T ss_pred             CEEEEEEEcCcccC-CCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence            36788777665432 12346677789999999999887766544431110 0    123  6999999998543

Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.

>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins

Probab=92.48  E-value=0.29  Score=30.83  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=26.2

Q ss_pred             HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC
Q 033165           28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA   71 (126)
Q Consensus        28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~   71 (126)
                      .+.++|++.|+++.-..  .     ..++..+|++|++|-..+.
T Consensus        12 ~v~~~L~~~GyeVv~l~--~-----~~~~~~~daiVvtG~~~n~   48 (80)
T PF03698_consen   12 NVKEALREKGYEVVDLE--N-----EQDLQNVDAIVVTGQDTNM   48 (80)
T ss_pred             HHHHHHHHCCCEEEecC--C-----ccccCCcCEEEEECCCccc
Confidence            37889999998765332  1     1246899999999976443

>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=92.39  E-value=1.3  Score=37.30  Aligned_cols=85  Identities=13%  Similarity=0.182  Sum_probs=50.4

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC--------CCCCCCCcCEEEEcCCCCCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP--------DDDDFGSYDGYVITGSCNDAHGN   74 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p--------~~~~~~~~d~iii~G~~~~~~~~   74 (126)
                      .+||+|+.+...... .    .....+.++|++.+.++.+-......+.        ..++..+.|.+|+.||-.     
T Consensus       290 ~~~i~iv~~~~~~~~-~----~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG-----  359 (569)
T PRK14076        290 PTKFGIVSRIDNEEA-I----NLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDG-----  359 (569)
T ss_pred             CcEEEEEcCCCCHHH-H----HHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcH-----
Confidence            368999877554332 2    1344567778778877665432111000        011244689999999932     


Q ss_pred             chHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165           75 DVWICKLIALLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        75 ~~~~~~~~~~i~~~~~~~~PvlGIC~G~  102 (126)
                           .+....+.+...++|+|||=.|.
T Consensus       360 -----T~L~aa~~~~~~~~PilGin~G~  382 (569)
T PRK14076        360 -----TVLRASKLVNGEEIPIICINMGT  382 (569)
T ss_pred             -----HHHHHHHHhcCCCCCEEEEcCCC
Confidence                 24444555555689999998875

>PRK14569 D-alanyl-alanine synthetase A; Provisional

Probab=91.53  E-value=1.5  Score=33.60  Aligned_cols=62  Identities=15%  Similarity=-0.026  Sum_probs=36.6

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEE
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVI   64 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii   64 (126)
                      |+++||+||-.+...+.-.+-.  =...+.+.|++.|.++..+.+...++...-.-.++|.++.
T Consensus         1 ~~~~~i~vl~gg~s~e~~vsl~--s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~   62 (296)
T PRK14569          1 MKNEKIVVLYGGDSPEREVSLK--SGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFV   62 (296)
T ss_pred             CCCcEEEEEeCCCCCchHhHHH--HHHHHHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEE
Confidence            8899999998888775322111  1235668888889988776654222111001135776655

>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional

Probab=91.50  E-value=1.5  Score=31.59  Aligned_cols=58  Identities=17%  Similarity=0.239  Sum_probs=34.1

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCC------------------CCCCCCcCEEE
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPD------------------DDDFGSYDGYV   63 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~------------------~~~~~~~d~ii   63 (126)
                      |+||+|+.....- +.+.    -...+.+.+++ .|.+++++++.+. .|.                  .+++.++|+||
T Consensus         1 M~kilIvy~S~~G-~T~~----lA~~ia~g~~~~~G~ev~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii   74 (200)
T PRK03767          1 MAKVLVLYYSMYG-HIET----MAEAVAEGAREVAGAEVTIKRVPET-VPEEVAKKAGGKTDQAAPVATPDELADYDAII   74 (200)
T ss_pred             CCeEEEEEcCCCC-HHHH----HHHHHHHHHhhcCCcEEEEEecccc-CCHHHHHhcCCCcccCCCccCHHHHHhCCEEE
Confidence            3599999987642 2111    12234445555 7889998887521 211                  23567899877


Q ss_pred             EcC
Q 033165           64 ITG   66 (126)
Q Consensus        64 i~G   66 (126)
                      +.-
T Consensus        75 ~gs   77 (200)
T PRK03767         75 FGT   77 (200)
T ss_pred             EEe
Confidence            653

>PRK05569 flavodoxin; Provisional

Probab=91.50  E-value=2.3  Score=28.60  Aligned_cols=57  Identities=18%  Similarity=0.157  Sum_probs=32.4

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS   67 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~   67 (126)
                      |.|++|+.....- +++.    -...+.+-+++.|.+++++++.+.+   ..++.++|+|++.-.
T Consensus         1 m~ki~iiY~S~tG-nT~~----iA~~i~~~~~~~g~~v~~~~~~~~~---~~~~~~~d~iilgsP   57 (141)
T PRK05569          1 MKKVSIIYWSCGG-NVEV----LANTIADGAKEAGAEVTIKHVADAK---VEDVLEADAVAFGSP   57 (141)
T ss_pred             CCeEEEEEECCCC-HHHH----HHHHHHHHHHhCCCeEEEEECCcCC---HHHHhhCCEEEEECC
Confidence            4588888876542 2111    1122334444568888888765322   125678999887533

>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA)

Probab=91.13  E-value=2.2  Score=31.63  Aligned_cols=83  Identities=17%  Similarity=0.127  Sum_probs=50.3

Q ss_pred             hHHHHhh-CCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCC
Q 033165           16 EYVKKKY-GGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRK   93 (126)
Q Consensus        16 ~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~   93 (126)
                      +.+++-| +.....+..+|++.|+++++....+.+ -..++.|.+||.||.-+-...  +.  +..+..+-+.+.++.+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~--~~--l~~eq~~~l~~~V~~Gg   89 (215)
T cd03142          14 EAVAALYPDGMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAH--DE--VKDEIVERVHRRVLDGM   89 (215)
T ss_pred             hhhHhhCcchHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCc--Cc--CCHHHHHHHHHHHHcCC
Confidence            3455555 345567888999999998866544322 012345889999998544321  11  11234445666777888


Q ss_pred             cEEEEchHH
Q 033165           94 KVLGICFGH  102 (126)
Q Consensus        94 PvlGIC~G~  102 (126)
                      =++|+=.|+
T Consensus        90 Glv~lHsg~   98 (215)
T cd03142          90 GLIVLHSGH   98 (215)
T ss_pred             CEEEECCCc
Confidence            888876554

Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.

>PRK07308 flavodoxin; Validated

Probab=90.99  E-value=1.7  Score=29.63  Aligned_cols=55  Identities=15%  Similarity=0.160  Sum_probs=32.0

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCC
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSC   68 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~   68 (126)
                      |+.|+..... -++++    ....+.+.+++.|.+++++++...+   .+++.++|.|++ |++
T Consensus         3 ~~~IvY~S~t-GnTe~----iA~~ia~~l~~~g~~~~~~~~~~~~---~~~l~~~d~vi~-g~~   57 (146)
T PRK07308          3 LAKIVYASMT-GNTEE----IADIVADKLRELGHDVDVDECTTVD---ASDFEDADIAIV-ATY   57 (146)
T ss_pred             eEEEEEECCC-chHHH----HHHHHHHHHHhCCCceEEEecccCC---HhHhccCCEEEE-EeC
Confidence            5666654332 22221    3344566667778888877754321   235678999988 554

>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component

Probab=90.86  E-value=2.8  Score=26.91  Aligned_cols=80  Identities=15%  Similarity=0.103  Sum_probs=44.7

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK   80 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~   80 (126)
                      |.++||+++-...-....      ....+.+.+++.|.++++......+++.  ...++|.|+++.-          +..
T Consensus         1 ~~~~~ILl~C~~G~sSS~------l~~k~~~~~~~~gi~~~v~a~~~~~~~~--~~~~~Dvill~pq----------i~~   62 (95)
T TIGR00853         1 MNETNILLLCAAGMSTSL------LVNKMNKAAEEYGVPVKIAAGSYGAAGE--KLDDADVVLLAPQ----------VAY   62 (95)
T ss_pred             CCccEEEEECCCchhHHH------HHHHHHHHHHHCCCcEEEEEecHHHHHh--hcCCCCEEEECch----------HHH
Confidence            567788877554433221      3345677888899988877654333322  3467896665421          122


Q ss_pred             HHHHHHHHHh-cCCcEEEE
Q 033165           81 LIALLKQLDS-LRKKVLGI   98 (126)
Q Consensus        81 ~~~~i~~~~~-~~~PvlGI   98 (126)
                      ..+-+++..+ .++|+.-|
T Consensus        63 ~~~~i~~~~~~~~ipv~~I   81 (95)
T TIGR00853        63 MLPDLKKETDKKGIPVEVI   81 (95)
T ss_pred             HHHHHHHHhhhcCCCEEEe
Confidence            2333444333 46898654

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.

>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional

Probab=90.70  E-value=0.98  Score=32.94  Aligned_cols=68  Identities=12%  Similarity=-0.009  Sum_probs=40.3

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe---EEEEEccCCCCCC----CCC-C--CCcCEEEEcCCCCC
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET---WDVFHVARGEFPD----DDD-F--GSYDGYVITGSCND   70 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---~~~~~~~~~~~p~----~~~-~--~~~d~iii~G~~~~   70 (126)
                      |.++|++||-.+..... -..++.....+..++++.|.+   +.. .+..++...    ... +  +++|.||.+||..-
T Consensus         1 ~~~~~~aIItvSd~~~~-G~i~D~ng~~L~~~L~~~G~~g~~v~~-~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~   78 (193)
T PRK09417          1 MDTLKIGLVSISDRASS-GVYEDKGIPALEEWLASALTSPFEIET-RLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGP   78 (193)
T ss_pred             CCCcEEEEEEEcCcCCC-CceeechHHHHHHHHHHcCCCCceEEE-EECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCC
Confidence            78899999988775321 112455667888889888643   322 222222110    001 2  36999999999543

>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function

Probab=90.56  E-value=0.19  Score=35.18  Aligned_cols=42  Identities=29%  Similarity=0.390  Sum_probs=27.4

Q ss_pred             CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165           55 DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF  100 (126)
Q Consensus        55 ~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~  100 (126)
                      +++ .|.+|+.||-+.+.-.. -.++..+++.++.  ...+.||||
T Consensus        78 ~~~-~D~vVlmGGLAMP~~~v-~~e~v~~li~ki~--~~~iiGiCF  119 (147)
T PF09897_consen   78 DPH-PDVVVLMGGLAMPKSGV-TPEDVNELIKKIS--PKKIIGICF  119 (147)
T ss_dssp             -S--EEEEEEEGGGGSTTTS---HHHHHHHHHHHE--EEEEEEEEE
T ss_pred             CCC-CCEEEEEcccccCCCCC-CHHHHHHHHHHhC--cCCEEEEeh
Confidence            344 99999999976653321 2455667777764  344999997

; PDB: 2R47_D.

>PRK09267 flavodoxin FldA; Validated

Probab=90.51  E-value=2.4  Score=29.52  Aligned_cols=55  Identities=16%  Similarity=0.290  Sum_probs=30.1

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-C-CCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-E-GETWDVFHVARGEFPDDDDFGSYDGYVITGSCN   69 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~-g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~   69 (126)
                      |||++|+.....-         .+..+.+.+.+ . ..+++++++.+.   ...++.+||.||+..+..
T Consensus         1 mmki~IiY~S~tG---------nT~~vA~~Ia~~l~~~~~~~~~~~~~---~~~~l~~~d~vi~g~pt~   57 (169)
T PRK09267          1 MAKIGIFFGSDTG---------NTEDIAKMIQKKLGKDVADVVDIAKA---SKEDFEAYDLLILGIPTW   57 (169)
T ss_pred             CCeEEEEEECCCC---------hHHHHHHHHHHHhCCCceEEEEhhhC---CHhhHhhCCEEEEEecCc
Confidence            4589999776542         23334444422 1 235566665432   123577899987765543

>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1

Probab=90.37  E-value=0.16  Score=34.69  Aligned_cols=94  Identities=16%  Similarity=0.152  Sum_probs=48.5

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC------------------CCCCCCcCEEEEc
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD------------------DDDFGSYDGYVIT   65 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~------------------~~~~~~~d~iii~   65 (126)
                      |||++|...........   .....+.+.+++.|.+++++++.+..+|.                  .+.+..+|++|+.
T Consensus         1 Mkilii~gS~r~~~~t~---~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~   77 (152)
T PF03358_consen    1 MKILIINGSPRKNSNTR---KLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFA   77 (152)
T ss_dssp             -EEEEEESSSSTTSHHH---HHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEE
T ss_pred             CEEEEEECcCCCCCHHH---HHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEe
Confidence            69999988774321111   12334455556678999999986431110                  0134578998885


Q ss_pred             CCCCCCCCCchHHHHHHHHHH---HHHhcCCcEEEEchH
Q 033165           66 GSCNDAHGNDVWICKLIALLK---QLDSLRKKVLGICFG  101 (126)
Q Consensus        66 G~~~~~~~~~~~~~~~~~~i~---~~~~~~~PvlGIC~G  101 (126)
                      ---. ...-.+-...+.+.+.   .-.-.++|++.++.|
T Consensus        78 sP~y-~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~  115 (152)
T PF03358_consen   78 SPVY-NGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG  115 (152)
T ss_dssp             EEEB-TTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred             ecEE-cCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence            2211 1111122344444442   111148899888654

5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....

>PRK03094 hypothetical protein; Provisional

Probab=89.97  E-value=0.98  Score=28.43  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=25.3

Q ss_pred             HHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC
Q 033165           29 FVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA   71 (126)
Q Consensus        29 ~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~   71 (126)
                      +.+.|++.|.++.-.+  .     ..+...+|++|++|-..+.
T Consensus        13 i~~~L~~~GYeVv~l~--~-----~~~~~~~Da~VitG~d~n~   48 (80)
T PRK03094         13 VQQALKQKGYEVVQLR--S-----EQDAQGCDCCVVTGQDSNV   48 (80)
T ss_pred             HHHHHHHCCCEEEecC--c-----ccccCCcCEEEEeCCCcce
Confidence            7889999998765332  1     1135789999999975443

>PRK03673 hypothetical protein; Provisional

Probab=89.96  E-value=0.92  Score=36.66  Aligned_cols=71  Identities=6%  Similarity=0.025  Sum_probs=46.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCNDAHGN   74 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~~~~~   74 (126)
                      |+|+.|+-.++.--. -+-+++-..++.+.|...|.++.......|+....     ..+..+|.||++||-....||
T Consensus         1 ~~~v~Iis~GdEll~-G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGpt~dD   76 (396)
T PRK03673          1 MLRVEMLSTGDEVLH-GQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGPTSDD   76 (396)
T ss_pred             CCEEEEEEecccCCC-CeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCCCCCcc
Confidence            578999988865321 12234567788999999999886655443321110     124579999999996655444

>cd05014 SIS_Kpsf KpsF-like protein

Probab=89.77  E-value=4.1  Score=26.67  Aligned_cols=88  Identities=15%  Similarity=0.091  Sum_probs=47.0

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHH
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIAL   84 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~   84 (126)
                      ||.++-.+......        ..+...|...|..+..+............+.+-|.+|+..-....       .+..+.
T Consensus         2 ~I~i~G~G~S~~~a--------~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t-------~~~~~~   66 (128)
T cd05014           2 KVVVTGVGKSGHIA--------RKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGET-------DELLNL   66 (128)
T ss_pred             eEEEEeCcHhHHHH--------HHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCC-------HHHHHH
Confidence            55666555443221        235555566677766554321111111234556666665432221       345667


Q ss_pred             HHHHHhcCCcEEEEchHH-HHHHH
Q 033165           85 LKQLDSLRKKVLGICFGH-QVRAI  107 (126)
Q Consensus        85 i~~~~~~~~PvlGIC~G~-Q~la~  107 (126)
                      ++.+.+++.|+++|+-.. --|++
T Consensus        67 ~~~a~~~g~~vi~iT~~~~s~la~   90 (128)
T cd05014          67 LPHLKRRGAPIIAITGNPNSTLAK   90 (128)
T ss_pred             HHHHHHCCCeEEEEeCCCCCchhh
Confidence            777778899999999743 33444

KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.

>PRK06455 riboflavin synthase; Provisional

Probab=89.76  E-value=2.6  Score=29.81  Aligned_cols=88  Identities=11%  Similarity=0.052  Sum_probs=50.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh--CCCeEEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCCCCCCc
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE--EGETWDVFHVA-RGEFPDD----DDFGSYDGYVITGSCNDAHGND   75 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~~~~~~   75 (126)
                      |+||+|+.+........       .-..+.|++  .+.+++++++. ..++|-.    ..-..||++|..|..... +..
T Consensus         1 ~~kigIV~s~fn~~~L~-------~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t-~h~   72 (155)
T PRK06455          1 MMKIGIADTTFARVDMG-------SAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPT-EKD   72 (155)
T ss_pred             CcEEEEEEEecchHHHH-------HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceecc-Ccc
Confidence            67999999877653211       123355566  34667777653 1233321    012579999999986332 222


Q ss_pred             hHHHH--HHHHHHHHHhcCCcEEEE
Q 033165           76 VWICK--LIALLKQLDSLRKKVLGI   98 (126)
Q Consensus        76 ~~~~~--~~~~i~~~~~~~~PvlGI   98 (126)
                      .++..  ...+++-.++.++||.-+
T Consensus        73 d~Va~~vS~GL~~lsL~t~~PVi~v   97 (155)
T PRK06455         73 KYCAHEASIGLIMAQLMTNKHIIEV   97 (155)
T ss_pred             hhHHHHHHHHHHHHHhhhCCCEEEE
Confidence            33332  334556566788998765

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed

Probab=89.75  E-value=1.7  Score=33.01  Aligned_cols=62  Identities=15%  Similarity=-0.048  Sum_probs=38.5

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT   65 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~   65 (126)
                      |.++||+|+-.+...+...+-+  -...+.++|++.|.++..+.+........ ...++|.+++.
T Consensus         2 ~~~~~v~~~~g~~~~~~~~~~~--s~~~i~~al~~~g~~v~~i~~~~~~~~~~-~~~~~D~v~~~   63 (304)
T PRK01372          2 KMFGKVAVLMGGTSAEREVSLN--SGAAVLAALREAGYDAHPIDPGEDIAAQL-KELGFDRVFNA   63 (304)
T ss_pred             CCCcEEEEEeCCCCCCceEeHH--hHHHHHHHHHHCCCEEEEEecCcchHHHh-ccCCCCEEEEe
Confidence            5567999998766554211110  23567889999999998887543211111 12478988875

>TIGR00177 molyb_syn molybdenum cofactor synthesis domain

Probab=89.69  E-value=0.47  Score=32.64  Aligned_cols=67  Identities=13%  Similarity=0.119  Sum_probs=43.0

Q ss_pred             CeEEEEEcCCCchH------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCC
Q 033165            4 KKFAVLLCAEDSEY------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCND   70 (126)
Q Consensus         4 ~ki~Il~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~   70 (126)
                      +|++|+-++..--.      .-+.+++...++.++|++.|.++..+.+..++....     ..++.+|.||.+||...
T Consensus         1 prv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~   78 (144)
T TIGR00177         1 PRVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGV   78 (144)
T ss_pred             CEEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence            47788877664321      112356677789999999999888776554431110     11357999999998544

The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.

>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=89.55  E-value=1.6  Score=33.36  Aligned_cols=69  Identities=19%  Similarity=0.250  Sum_probs=42.3

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      ||++|+.+ .. +...+    ....+..+|++.|.++.              .+++|.+|+.||-.          .+..
T Consensus         1 M~i~Ii~~-~~-~~~~~----~~~~l~~~l~~~g~~~~--------------~~~~Dlvi~iGGDG----------T~L~   50 (265)
T PRK04885          1 MKVAIISN-GD-PKSKR----VASKLKKYLKDFGFILD--------------EKNPDIVISVGGDG----------TLLS   50 (265)
T ss_pred             CEEEEEeC-CC-HHHHH----HHHHHHHHHHHcCCccC--------------CcCCCEEEEECCcH----------HHHH
Confidence            47899866 33 22221    23446667777676511              13579999999932          2444


Q ss_pred             HHHHHHh--cCCcEEEEchHH
Q 033165           84 LLKQLDS--LRKKVLGICFGH  102 (126)
Q Consensus        84 ~i~~~~~--~~~PvlGIC~G~  102 (126)
                      ..+.+..  .++|++||=.|.
T Consensus        51 a~~~~~~~~~~iPilGIN~G~   71 (265)
T PRK04885         51 AFHRYENQLDKVRFVGVHTGH   71 (265)
T ss_pred             HHHHhcccCCCCeEEEEeCCC
Confidence            4555444  589999998875

>PRK11914 diacylglycerol kinase; Reviewed

Probab=89.52  E-value=1.4  Score=33.77  Aligned_cols=65  Identities=12%  Similarity=-0.045  Sum_probs=37.4

Q ss_pred             CCCCeEEEEEcCCCch-HHHHhhCCHHHHHHHHHhhCCCeEEEEEccC-CCCCC---CCCCCCcCEEEEcCCCC
Q 033165            1 MGGKKFAVLLCAEDSE-YVKKKYGGYFGVFVRMLAEEGETWDVFHVAR-GEFPD---DDDFGSYDGYVITGSCN   69 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~p~---~~~~~~~d~iii~G~~~   69 (126)
                      |+|+|++++.+...-. ...+    ....+.+.|++.+.+++++.... ++...   ....+.+|.||+.||-.
T Consensus         6 ~~~~~~~iI~NP~sG~g~~~~----~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDG   75 (306)
T PRK11914          6 HEIGKVTVLTNPLSGHGAAPH----AAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDG   75 (306)
T ss_pred             CCCceEEEEECCCCCCCcHHH----HHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCch
Confidence            7889999998855321 1111    12245677888888887655321 11000   00125689999999944

>COG5426 Uncharacterized membrane protein [Function unknown]

Probab=88.76  E-value=0.89  Score=33.58  Aligned_cols=77  Identities=14%  Similarity=0.262  Sum_probs=44.5

Q ss_pred             HHHHHHHhhCCCeEEEEEccC--CCCCC-CCCCCCcCEEEEcCCCCCCC--CCchH-----HHHHHHHHHHHHhcCC--c
Q 033165           27 GVFVRMLAEEGETWDVFHVAR--GEFPD-DDDFGSYDGYVITGSCNDAH--GNDVW-----ICKLIALLKQLDSLRK--K   94 (126)
Q Consensus        27 ~~~~~~l~~~g~~~~~~~~~~--~~~p~-~~~~~~~d~iii~G~~~~~~--~~~~~-----~~~~~~~i~~~~~~~~--P   94 (126)
                      +.+...|+..+.+++......  ..+|. .+.++.||+|||+--.++..  ....|     ..+..++|++.++.+-  -
T Consensus        35 d~Ll~~Lr~g~~dv~yMpAH~~q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~likdyV~~GGGLL  114 (254)
T COG5426          35 DPLLKALRGGEYDVTYMPAHDAQEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIKDYVENGGGLL  114 (254)
T ss_pred             hHHHHHHhCCCcceEEechHHHHHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHHHHHHhcCCcEE
Confidence            467778887788887665431  22443 35678999999984322321  11222     2446678888887653  3


Q ss_pred             EEEEchHHH
Q 033165           95 VLGICFGHQ  103 (126)
Q Consensus        95 vlGIC~G~Q  103 (126)
                      ++|=-+.+|
T Consensus       115 MiGGY~SF~  123 (254)
T COG5426         115 MIGGYLSFQ  123 (254)
T ss_pred             EEccEEEEe
Confidence            333334444

>cd00885 cinA Competence-damaged protein

Probab=88.33  E-value=2.1  Score=30.44  Aligned_cols=69  Identities=13%  Similarity=0.042  Sum_probs=40.5

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCCCCCC
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCNDAHGN   74 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~~~~~   74 (126)
                      |++|+-.+..--. -+.+++...++.++|.+.|.++..+.+..++....     .-++.+|.||.+||-....+|
T Consensus         1 ~v~Ii~~GdEl~~-G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D   74 (170)
T cd00885           1 TAEIIAIGDELLS-GQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHDD   74 (170)
T ss_pred             CEEEEEECccccC-CeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCC
Confidence            4566666553211 11234566788899999999886655443321100     112578999999996554443

CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.

>PRK09739 hypothetical protein; Provisional

Probab=87.98  E-value=1.5  Score=31.49  Aligned_cols=40  Identities=10%  Similarity=0.144  Sum_probs=28.3

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHH----HHHhhCCCeEEEEEccC
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFV----RMLAEEGETWDVFHVAR   47 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~----~~l~~~g~~~~~~~~~~   47 (126)
                      |.|+||++|...+..       ++++..+.    +.+++.+.+++++++.+
T Consensus         1 ~~mmkiliI~~sp~~-------~s~s~~l~~~~~~~~~~~g~~v~~~dL~~   44 (199)
T PRK09739          1 MQSMRIYLVWAHPRH-------DSLTAKVAEAIHQRAQERGHQVEELDLYR   44 (199)
T ss_pred             CCCceEEEEEcCCCC-------CCcHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence            889999999998754       24444444    44455688888888764

>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=87.84  E-value=3.2  Score=31.82  Aligned_cols=78  Identities=17%  Similarity=0.181  Sum_probs=41.9

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC----CCCCCCCcCEEEEcCCCCCCCCCchHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP----DDDDFGSYDGYVITGSCNDAHGNDVWIC   79 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p----~~~~~~~~d~iii~G~~~~~~~~~~~~~   79 (126)
                      |||+|+-+...... .    +....+.+++ +.+.++.+-......++    ..+.. +.|.+|..||-..         
T Consensus         1 m~i~iv~~~~~~~~-~----~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~-~~D~vi~lGGDGT---------   64 (271)
T PRK01185          1 MKVAFVIRKDCKRC-I----KIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEI-NADVIITIGGDGT---------   64 (271)
T ss_pred             CEEEEEecCCCHHH-H----HHHHHHHHHH-hcCCEEEEechhhhhcCcccCccccc-CCCEEEEEcCcHH---------
Confidence            57899877554332 2    2344566667 45666544321111111    11122 6899999999322         


Q ss_pred             HHHHHHHHHHhcCCcEEEEchH
Q 033165           80 KLIALLKQLDSLRKKVLGICFG  101 (126)
Q Consensus        80 ~~~~~i~~~~~~~~PvlGIC~G  101 (126)
                       +   ++.+.....|++||=.|
T Consensus        65 -~---L~a~~~~~~PilGIN~G   82 (271)
T PRK01185         65 -I---LRTLQRAKGPILGINMG   82 (271)
T ss_pred             -H---HHHHHHcCCCEEEEECC
Confidence             2   22222235699999887

>PRK05568 flavodoxin; Provisional

Probab=87.62  E-value=6.5  Score=26.31  Aligned_cols=57  Identities=14%  Similarity=0.182  Sum_probs=33.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS   67 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~   67 (126)
                      |+|++|+.....- +.+.    ....+.+.+++.|.+++++++.+.+   ..++.++|+|++.-.
T Consensus         1 m~~~~IvY~S~~G-nT~~----~a~~i~~~~~~~g~~v~~~~~~~~~---~~~~~~~d~iilgsp   57 (142)
T PRK05568          1 MKKINIIYWSGTG-NTEA----MANLIAEGAKENGAEVKLLNVSEAS---VDDVKGADVVALGSP   57 (142)
T ss_pred             CCeEEEEEECCCc-hHHH----HHHHHHHHHHHCCCeEEEEECCCCC---HHHHHhCCEEEEECC
Confidence            4578888765442 2221    1223444455668888888765322   125788998777544

>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=87.50  E-value=5.5  Score=30.12  Aligned_cols=72  Identities=13%  Similarity=0.171  Sum_probs=42.0

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      ||++|...+... .       ....+..++.+.|.++....  ... +   ...+.|.+|..||-.          .+..
T Consensus         1 m~~~~~~~~~~~-~-------~~~~~~~~l~~~~~~~~~~~--~~~-~---~~~~~d~vi~iGGDG----------T~L~   56 (256)
T PRK14075          1 MKLGIFYREEKE-K-------EAKFLKEKISKEHEVVEFCE--ASA-S---GKVTADLIIVVGGDG----------TVLK   56 (256)
T ss_pred             CEEEEEeCccHH-H-------HHHHHHHHHHHcCCeeEeec--ccc-c---ccCCCCEEEEECCcH----------HHHH
Confidence            578888444422 1       23346677777776544221  111 1   235789999999932          2223


Q ss_pred             HHHHHHhcCCcEEEEchHH
Q 033165           84 LLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~  102 (126)
                      ..+.+   ++|++||=.|.
T Consensus        57 a~~~~---~~Pilgin~G~   72 (256)
T PRK14075         57 AAKKV---GTPLVGFKAGR   72 (256)
T ss_pred             HHHHc---CCCEEEEeCCC
Confidence            33333   89999998775

>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative

Probab=87.00  E-value=7.3  Score=26.27  Aligned_cols=58  Identities=10%  Similarity=0.060  Sum_probs=29.9

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEE-EEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWD-VFHVARGEFPDDDDFGSYDGYVITGS   67 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~p~~~~~~~~d~iii~G~   67 (126)
                      ||++|+.....- +.++    ....+.+.++..+.+++ ++++.+-. ....++.+||.|++.-+
T Consensus         1 M~i~IiY~S~tG-nTe~----iA~~ia~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~d~iilgs~   59 (140)
T TIGR01754         1 MRILLAYLSLSG-NTEE----VAFMIQDYLQKDGHEVDILHRIGTLA-DAPLDPENYDLVFLGTW   59 (140)
T ss_pred             CeEEEEEECCCC-hHHH----HHHHHHHHHhhCCeeEEecccccccc-cCcCChhhCCEEEEEcC
Confidence            478888765432 1111    23345555666677766 33332101 11125678998877654

This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.

>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=86.78  E-value=3.4  Score=31.52  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=26.0

Q ss_pred             CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165           57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~  102 (126)
                      +++|.+|..||-.          .+...++.+...++|++||=.|.
T Consensus        32 ~~~D~vi~iGGDG----------T~L~a~~~~~~~~iPilGIN~G~   67 (259)
T PRK00561         32 DGADYLFVLGGDG----------FFVSTAANYNCAGCKVVGINTGH   67 (259)
T ss_pred             CCCCEEEEECCcH----------HHHHHHHHhcCCCCcEEEEecCC
Confidence            4589999999932          24445555555789999998874

>PRK13054 lipid kinase; Reviewed

Probab=86.77  E-value=3.3  Score=31.72  Aligned_cols=63  Identities=19%  Similarity=0.117  Sum_probs=36.8

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC-CCCCC---CCCCCCcCEEEEcCCCC
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR-GEFPD---DDDFGSYDGYVITGSCN   69 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~p~---~~~~~~~d~iii~G~~~   69 (126)
                      |.|+|++++.+.....  .+   .+.. +.+.|++.+.+++++.... ++...   ....+.+|.||+.||-.
T Consensus         1 ~~~~~~~~i~N~~~~~--~~---~~~~-~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDG   67 (300)
T PRK13054          1 MTFPKSLLILNGKSAG--NE---ELRE-AVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDG   67 (300)
T ss_pred             CCCceEEEEECCCccc--hH---HHHH-HHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCcc
Confidence            8899999998844321  11   1233 4556888888877654321 11100   00124689999999954

>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional

Probab=86.63  E-value=2.4  Score=29.87  Aligned_cols=91  Identities=16%  Similarity=0.159  Sum_probs=50.1

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC---CeEEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCCC-C
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG---ETWDVFHVA-RGEFPDD----DDFGSYDGYVITGSCNDA-H   72 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~~-~   72 (126)
                      ...||+|+..+....-+..-    .+-..+.|.+.|   .+++++++. ..|+|..    ..-.+||++|..|.--.- .
T Consensus        11 ~~~riaIV~s~~n~~i~~~l----~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavIalG~VIrG~T   86 (154)
T PRK00061         11 KGLRIGIVVARFNDFITDAL----LEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAESGKYDAVIALGAVIRGET   86 (154)
T ss_pred             CCCEEEEEEecCcHHHHHHH----HHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHHcCCCCEEEEEeeEEcCCC
Confidence            45799999998876532221    122345566667   566777653 1223321    012579999999864211 1


Q ss_pred             CCchHHHH--HHHHHHHHHhcCCcEE
Q 033165           73 GNDVWICK--LIALLKQLDSLRKKVL   96 (126)
Q Consensus        73 ~~~~~~~~--~~~~i~~~~~~~~Pvl   96 (126)
                      +..+++.+  ...+.+-.++.++||.
T Consensus        87 ~H~e~V~~~v~~gl~~v~l~~~~PV~  112 (154)
T PRK00061         87 PHFDYVANEVAKGLADVSLETGVPVG  112 (154)
T ss_pred             chHHHHHHHHHHHHHHHHhccCCCEE
Confidence            22233333  3345555667899953

>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain

Probab=86.23  E-value=2.6  Score=34.20  Aligned_cols=70  Identities=9%  Similarity=-0.006  Sum_probs=44.2

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCCCCCC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCNDAHGN   74 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~~~~~   74 (126)
                      ||++|+-.++.--. -+-+++...++.+++++.|.++..+.+..++....     .-++.+|.||++||-....+|
T Consensus         1 m~v~Ii~tGdEll~-G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlgpt~dD   75 (413)
T TIGR00200         1 LKAEIISVGDELLL-GQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLGPTSDD   75 (413)
T ss_pred             CEEEEEEECccccC-CcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCCCCCcc
Confidence            58888888765321 11234566788899999999887665543332110     123679999999996544343

cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species

>PRK12419 riboflavin synthase subunit beta; Provisional

Probab=85.25  E-value=5.5  Score=28.24  Aligned_cols=91  Identities=19%  Similarity=0.237  Sum_probs=48.7

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC---CeEEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCC-CC
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG---ETWDVFHVA-RGEFPDD----DDFGSYDGYVITGSCND-AH   72 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~-~~   72 (126)
                      ...||+|+..+....-...-    ..-..+.|.+.|   .+++++++. .-|+|..    ..-.+||++|..|.--. ..
T Consensus         9 ~~~riaIV~srfn~~It~~L----l~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT   84 (158)
T PRK12419          9 TPQRIAFIQARWHADIVDQA----RKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGI   84 (158)
T ss_pred             CCCEEEEEEecCCHHHHHHH----HHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCC
Confidence            45799999988875422211    111234556667   456777653 1233321    11257999999986311 11


Q ss_pred             CCchHHHH--HHHHHHHHHhcCCcEE
Q 033165           73 GNDVWICK--LIALLKQLDSLRKKVL   96 (126)
Q Consensus        73 ~~~~~~~~--~~~~i~~~~~~~~Pvl   96 (126)
                      +..+++.+  ...+.+-.++.++||.
T Consensus        85 ~H~e~V~~~v~~gl~~vsl~~~~PV~  110 (158)
T PRK12419         85 YRHEFVAQAVIDGLMRVQLDTEVPVF  110 (158)
T ss_pred             chhHHHHHHHHHHHHHHHhccCCCEE
Confidence            22244433  2344555567799963

>PLN02935 Bifunctional NADH kinase/NAD(+) kinase

Probab=84.94  E-value=12  Score=31.46  Aligned_cols=86  Identities=15%  Similarity=0.200  Sum_probs=47.7

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHh-hCCCeEEEEEccCCC---------CC----CCCC---C-CCcCEEE
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLA-EEGETWDVFHVARGE---------FP----DDDD---F-GSYDGYV   63 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~---------~p----~~~~---~-~~~d~ii   63 (126)
                      .+++|+|+-...... ..+    ....+..+|+ ..|.++.+-......         .+    ....   + .++|.+|
T Consensus       193 ~p~~VgIV~n~~k~~-a~e----l~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVI  267 (508)
T PLN02935        193 DPQTVLIITKPNSTS-VRV----LCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVI  267 (508)
T ss_pred             CCCEEEEEecCCCHH-HHH----HHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEE
Confidence            357899987755433 221    3345667776 466665543211000         00    0011   2 3689999


Q ss_pred             EcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165           64 ITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        64 i~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~  102 (126)
                      ..||-.          .++...+.+....+|||||=.|.
T Consensus       268 siGGDG----------TlL~Aar~~~~~~iPILGIN~G~  296 (508)
T PLN02935        268 TLGGDG----------TVLWAASMFKGPVPPVVPFSMGS  296 (508)
T ss_pred             EECCcH----------HHHHHHHHhccCCCcEEEEeCCC
Confidence            999932          23444555545679999998773

>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins

Probab=84.88  E-value=6.9  Score=29.39  Aligned_cols=82  Identities=18%  Similarity=0.166  Sum_probs=45.9

Q ss_pred             CCeEEEEEcCCCc--hHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165            3 GKKFAVLLCAEDS--EYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK   80 (126)
Q Consensus         3 ~~ki~Il~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~   80 (126)
                      .++|+++......  ......-+.-...+.+.|++. .++..+++...++|     +++|.+||.|.... +.     ..
T Consensus       146 ~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~~~~IP-----~~~d~Lvi~~P~~~-ls-----~~  213 (271)
T PF09822_consen  146 KPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLANEEIP-----DDADVLVIAGPKTD-LS-----EE  213 (271)
T ss_pred             CceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCcccccC-----CCCCEEEEECCCCC-CC-----HH
Confidence            4677777765554  000011111223466777776 77777665422232     68999999877432 22     33


Q ss_pred             HHHHHHHHHhcCCcEE
Q 033165           81 LIALLKQLDSLRKKVL   96 (126)
Q Consensus        81 ~~~~i~~~~~~~~Pvl   96 (126)
                      ....|.+++++|-++|
T Consensus       214 e~~~l~~yl~~GG~ll  229 (271)
T PF09822_consen  214 ELYALDQYLMNGGKLL  229 (271)
T ss_pred             HHHHHHHHHHcCCeEE
Confidence            5556777777766654

>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=84.81  E-value=9.7  Score=29.09  Aligned_cols=71  Identities=13%  Similarity=0.032  Sum_probs=44.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      |.+++|+.+... ...     .....+.++|++.|.++..     +       ..+.|.+|+.||-.          .+.
T Consensus         2 ~~~i~iv~~~~~-~a~-----~~~~~l~~~l~~~g~~~~~-----~-------~~~~D~vi~lGGDG----------T~L   53 (264)
T PRK03501          2 RRNLFFFYKRDK-ELV-----EKVKPLKKIAEEYGFTVVD-----H-------PKNANIIVSIGGDG----------TFL   53 (264)
T ss_pred             CcEEEEEECCCH-HHH-----HHHHHHHHHHHHCCCEEEc-----C-------CCCccEEEEECCcH----------HHH
Confidence            347888876555 321     1334577788888876542     0       13579999999932          233


Q ss_pred             HHHHHHHhc-CCcEEEEch-H
Q 033165           83 ALLKQLDSL-RKKVLGICF-G  101 (126)
Q Consensus        83 ~~i~~~~~~-~~PvlGIC~-G  101 (126)
                      ...+.+... ++|++||=. |
T Consensus        54 ~a~~~~~~~~~~pilgIn~~G   74 (264)
T PRK03501         54 QAVRKTGFREDCLYAGISTKD   74 (264)
T ss_pred             HHHHHhcccCCCeEEeEecCC
Confidence            444444333 689999988 6

>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional

Probab=84.69  E-value=2.4  Score=34.51  Aligned_cols=67  Identities=12%  Similarity=0.046  Sum_probs=43.8

Q ss_pred             CCeEEEEEcCCCchH------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCC
Q 033165            3 GKKFAVLLCAEDSEY------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCN   69 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~   69 (126)
                      ++|++|+-++.+--.      .-+-+++...++..++++.|.++..+....++....     .-++++|.||++||.+
T Consensus       193 ~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S  270 (419)
T PRK14690        193 PLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGAS  270 (419)
T ss_pred             CCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCcc
Confidence            579999999754210      112356677889999999999887665543332110     1235799999999853

>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD)

Probab=84.68  E-value=1.5  Score=29.57  Aligned_cols=65  Identities=11%  Similarity=-0.001  Sum_probs=39.4

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCC
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCND   70 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~   70 (126)
                      |++|+-.+.+--. -..+++...++.+++++.|.++..+....++....     ..++++|.||.+||...
T Consensus         1 ~v~ii~~G~El~~-g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~   70 (133)
T cd00758           1 RVAIVTVSDELSQ-GQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGV   70 (133)
T ss_pred             CEEEEEeCccccC-CceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence            5677777654321 11245666788899999998877664433321100     11346999999998543

This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.

>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV

Probab=84.67  E-value=4.8  Score=29.03  Aligned_cols=59  Identities=17%  Similarity=0.162  Sum_probs=32.0

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-CCeEEEEEccCCC---------------CC--CCCCCCCcCEEEEc
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-GETWDVFHVARGE---------------FP--DDDDFGSYDGYVIT   65 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~---------------~p--~~~~~~~~d~iii~   65 (126)
                      +||+|+.....- +++.    -...+.+-+++. |.+++++++.+..               .|  ..+++.++|+|++.
T Consensus         1 ~kilIiY~S~~G-~T~~----lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~G   75 (197)
T TIGR01755         1 VKVLVLYYSMYG-HIET----MARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFG   75 (197)
T ss_pred             CeEEEEEeCCCC-HHHH----HHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEE
Confidence            478999887642 2111    112233444444 8889888874311               01  01345689997775


Q ss_pred             CC
Q 033165           66 GS   67 (126)
Q Consensus        66 G~   67 (126)
                      -.
T Consensus        76 SP   77 (197)
T TIGR01755        76 TP   77 (197)
T ss_pred             ec
Confidence            43

This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.

>PRK03670 competence damage-inducible protein A; Provisional

Probab=84.63  E-value=2.6  Score=31.94  Aligned_cols=70  Identities=10%  Similarity=0.067  Sum_probs=42.4

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC----C-CCC-CcCEEEEcCCCCCCCCC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD----D-DFG-SYDGYVITGSCNDAHGN   74 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~----~-~~~-~~d~iii~G~~~~~~~~   74 (126)
                      ||..||-.++.--. -+..++...++.+.|...|.++..+.+..++....    . .+. .+|.||++||-....||
T Consensus         1 m~a~Ii~iGdEll~-G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt~dD   76 (252)
T PRK03670          1 MFAEIITVGDELLT-GNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGPTHDD   76 (252)
T ss_pred             CEEEEEEeCCcCcC-CeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccCCCCC
Confidence            46777777664321 11234556678899999999987665543321100    0 123 48999999996554444

>PRK00549 competence damage-inducible protein A; Provisional

Probab=84.19  E-value=3.8  Score=33.24  Aligned_cols=70  Identities=13%  Similarity=-0.002  Sum_probs=44.1

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-----CCCCCCcCEEEEcCCCCCCCCC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-----DDDFGSYDGYVITGSCNDAHGN   74 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-----~~~~~~~d~iii~G~~~~~~~~   74 (126)
                      ||+.||-.+..--. -+-+++...++.+.|.+.|.++..+....++...     .....++|.||++||-....+|
T Consensus         1 m~~~ii~~G~Ell~-G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlGpt~dD   75 (414)
T PRK00549          1 MKAEIIAVGTELLL-GQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLGPTKDD   75 (414)
T ss_pred             CEEEEEEecccccC-CceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCCCCCCc
Confidence            57888877764321 1123556778899999999988766544333110     0123679999999996554444

>PRK13055 putative lipid kinase; Reviewed

Probab=83.61  E-value=8  Score=30.18  Aligned_cols=64  Identities=13%  Similarity=0.183  Sum_probs=36.0

Q ss_pred             CCeEEEEEcCCCchH-HHHhhCCHHHHHHHHHhhCCCeEEEEEccC--CCCC---CCCCCCCcCEEEEcCCCCC
Q 033165            3 GKKFAVLLCAEDSEY-VKKKYGGYFGVFVRMLAEEGETWDVFHVAR--GEFP---DDDDFGSYDGYVITGSCND   70 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~~p---~~~~~~~~d~iii~G~~~~   70 (126)
                      |+|++|+.+...-.. ..+    ....+.+.|++.+.+++++....  ++..   .....+++|.||+.||-.+
T Consensus         2 ~~r~~iI~NP~sG~~~~~~----~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGT   71 (334)
T PRK13055          2 QKRARLIYNPTSGQEIMKK----NVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGT   71 (334)
T ss_pred             CceEEEEECCCCCchhHHH----HHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCH
Confidence            578888877553221 111    12335677888898887764331  1110   0011246899999999543

>cd03522 MoeA_like MoeA_like

Probab=83.54  E-value=2.3  Score=33.25  Aligned_cols=66  Identities=9%  Similarity=0.028  Sum_probs=43.1

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCC-CcCEEEEcCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFG-SYDGYVITGSCN   69 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~-~~d~iii~G~~~   69 (126)
                      ++|++|+.++.....- ..++++...+...+++.|.++..+....++....     .-++ .+|.||++||.+
T Consensus       159 ~~rv~II~TG~Ev~~G-~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts  230 (312)
T cd03522         159 PLRVGLIVTGSEVYGG-RIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS  230 (312)
T ss_pred             CCEEEEEEcCCcCCCC-cEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence            5799999987643211 1256788889999999999887665443321100     0123 389999999854

This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.

>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]

Probab=82.35  E-value=1.7  Score=33.15  Aligned_cols=72  Identities=11%  Similarity=0.016  Sum_probs=44.1

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCCCCCCc
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCNDAHGND   75 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~~~~~~   75 (126)
                      |++..||-.++.--.- +.-++-..++.+.|.+.|+++....+..|+....     ...+.+|-||++||-...+||.
T Consensus         1 ~~~a~iI~vG~ElL~G-~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~DDi   77 (255)
T COG1058           1 MMKAEIIAVGDELLSG-RIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHDDL   77 (255)
T ss_pred             CceEEEEEEccceecC-ceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCccHh
Confidence            4566666655543110 0012345679999999999998777654432111     0125699999999977666653

>smart00852 MoCF_biosynth Probable molybdopterin binding domain

Probab=82.01  E-value=2.1  Score=28.76  Aligned_cols=48  Identities=15%  Similarity=0.160  Sum_probs=30.6

Q ss_pred             hCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCC
Q 033165           22 YGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCN   69 (126)
Q Consensus        22 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~   69 (126)
                      +++...++..++++.|.++..+.+..++....     ..++.+|.||.+||..
T Consensus        16 ~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g   68 (135)
T smart00852       16 YDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG   68 (135)
T ss_pred             ccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence            34556678899999998876554433321100     0124699999999865

This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.

>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional

Probab=81.64  E-value=2.2  Score=34.58  Aligned_cols=67  Identities=12%  Similarity=0.047  Sum_probs=43.1

Q ss_pred             CCeEEEEEcCCCchH------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCC
Q 033165            3 GKKFAVLLCAEDSEY------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCN   69 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~   69 (126)
                      ++|++||-++..--+      --+-|++...++..++++.|.++..+.+..++....     ....++|.||.+||.+
T Consensus       177 ~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S  254 (411)
T PRK10680        177 KVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS  254 (411)
T ss_pred             CCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence            579999987754311      011245677788899999998877665544432110     1135799999999954

>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]

Probab=81.10  E-value=17  Score=25.67  Aligned_cols=103  Identities=17%  Similarity=0.127  Sum_probs=53.8

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeE---EEEEcc-CCCCCC----CCCCCCcCEEEEcCCCCC-CC
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETW---DVFHVA-RGEFPD----DDDFGSYDGYVITGSCND-AH   72 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~---~~~~~~-~~~~p~----~~~~~~~d~iii~G~~~~-~~   72 (126)
                      .+.||+|+..+....-...    ...-..+.+.+.|.+.   +++++. .-+.|.    ...-.+||+||-.|---. ..
T Consensus        11 ~~~riaIV~arfn~~I~d~----ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T   86 (152)
T COG0054          11 KGLRIAIVVARFNDDITDA----LLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGET   86 (152)
T ss_pred             CCceEEEEEeehhHHHHHH----HHHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCC
Confidence            3579999998876542211    1112334555566554   466653 223342    112367999998875211 11


Q ss_pred             CCchHHHH--HHHHHHHHHhcCCcEEEEchH----HHHHHHH
Q 033165           73 GNDVWICK--LIALLKQLDSLRKKVLGICFG----HQVRAIT  108 (126)
Q Consensus        73 ~~~~~~~~--~~~~i~~~~~~~~PvlGIC~G----~Q~la~~  108 (126)
                      ...+++..  ...+.+-.++.++||.--=++    .|.+.++
T Consensus        87 ~Hfd~Va~~~~~gl~~vsl~~~~PV~~GVLt~~~~eqA~~ra  128 (152)
T COG0054          87 YHFDYVANEVARGLMDVSLETGVPVTFGVLTTDNIEQAIERA  128 (152)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCeEeeecCCCcHHHHHHHh
Confidence            22234433  345556667789996433233    3666553

>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional

Probab=81.02  E-value=12  Score=24.50  Aligned_cols=57  Identities=9%  Similarity=-0.091  Sum_probs=31.6

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT   65 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~   65 (126)
                      |.++||+++-...-....      ....+....++.|.++++-....+...  +...++|.++++
T Consensus         1 m~~kkIllvC~~G~sTSl------l~~km~~~~~~~gi~~~V~A~~~~~~~--~~~~~~DviLl~   57 (106)
T PRK10499          1 MEKKHIYLFCSAGMSTSL------LVSKMRAQAEKYEVPVIIEAFPETLAG--EKGQNADVVLLG   57 (106)
T ss_pred             CCCCEEEEECCCCccHHH------HHHHHHHHHHHCCCCEEEEEeecchhh--ccccCCCEEEEC
Confidence            677888888665554321      111244445667888776553322211  235678876664

>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin

Probab=80.47  E-value=0.33  Score=26.49  Aligned_cols=17  Identities=29%  Similarity=0.489  Sum_probs=11.4

Q ss_pred             cEEEEchHHHHHHHHhC
Q 033165           94 KVLGICFGHQVRAITVF  110 (126)
Q Consensus        94 PvlGIC~G~Q~la~~~G  110 (126)
                      -..|-|||.|++..+-|
T Consensus        31 gtagacfgaqimvaakg   47 (48)
T PF09075_consen   31 GTAGACFGAQIMVAAKG   47 (48)
T ss_dssp             SS--TTTTTHHHHTTT-
T ss_pred             Cccccccchhhhhhccc
Confidence            46789999999976544

The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.

>PLN02404 6,7-dimethyl-8-ribityllumazine synthase

Probab=80.41  E-value=11  Score=26.09  Aligned_cols=104  Identities=15%  Similarity=0.093  Sum_probs=56.2

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe---EEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCCC-C
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET---WDVFHVA-RGEFPDD----DDFGSYDGYVITGSCNDA-H   72 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~~-~   72 (126)
                      ...||+|+..+....-...    -.+-..+.|.+.|.+   ++++++. .-|+|..    ..-.+||++|..|.--.- .
T Consensus         6 ~~~ri~IV~s~fn~~I~~~----Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT   81 (141)
T PLN02404          6 EGLRFGVVVARFNEIITKN----LLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDT   81 (141)
T ss_pred             CCCEEEEEEecCcHHHHHH----HHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCC
Confidence            3579999999887542221    111223455566764   6666653 1223321    112479999998863111 1


Q ss_pred             CCchHHHH--HHHHHHHHHhcCCcE-EEE---chHHHHHHHHh
Q 033165           73 GNDVWICK--LIALLKQLDSLRKKV-LGI---CFGHQVRAITV  109 (126)
Q Consensus        73 ~~~~~~~~--~~~~i~~~~~~~~Pv-lGI---C~G~Q~la~~~  109 (126)
                      +..+++.+  ...+.+-.++.++|| +||   =.=.|.+.++-
T Consensus        82 ~H~e~V~~~v~~gl~~vsl~~~~PV~~GVLt~~~~eQA~~Rag  124 (141)
T PLN02404         82 THYDAVANSAASGVLSAGLNSGVPCIFGVLTCDDMEQALNRAG  124 (141)
T ss_pred             chhHHHHHHHHHHHHHHHhccCCCEEEEEcCCCCHHHHHHHhC
Confidence            22244433  334555567789995 333   34467777764

>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=80.07  E-value=7.5  Score=29.84  Aligned_cols=63  Identities=16%  Similarity=0.212  Sum_probs=37.7

Q ss_pred             HHHHHhhCCCeEEEEEccCCCC--C-----CCCCC-CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165           29 FVRMLAEEGETWDVFHVARGEF--P-----DDDDF-GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF  100 (126)
Q Consensus        29 ~~~~l~~~g~~~~~~~~~~~~~--p-----~~~~~-~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~  100 (126)
                      +.++|++.|.++.+-......+  +     ..+++ +.+|.+|..||-.          .+....+.+...++|++||=.
T Consensus         5 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG----------T~L~aa~~~~~~~~PilgIn~   74 (272)
T PRK02231          5 LFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGDG----------NMLGRARVLAKYDIPLIGINR   74 (272)
T ss_pred             HHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCcH----------HHHHHHHHhccCCCcEEEEeC
Confidence            5677878887776543111100  0     00122 3589999999932          244445555556899999987


Q ss_pred             H
Q 033165          101 G  101 (126)
Q Consensus       101 G  101 (126)
                      |
T Consensus        75 G   75 (272)
T PRK02231         75 G   75 (272)
T ss_pred             C
Confidence            7

>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family

Probab=80.06  E-value=10  Score=28.74  Aligned_cols=95  Identities=14%  Similarity=0.057  Sum_probs=49.7

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-CCCC---CCCCCCcCEEEEcCCCCCCCCCchHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-EFPD---DDDFGSYDGYVITGSCNDAHGNDVWI   78 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~p~---~~~~~~~d~iii~G~~~~~~~~~~~~   78 (126)
                      |+|++|+-+...-...  . ......+.+.|++.+.+++++..... +...   ......+|.||+.||-.+        
T Consensus         1 ~~~~~ii~Np~sg~~~--~-~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGT--------   69 (293)
T TIGR00147         1 MAEAPAILNPTAGKSN--D-NKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGT--------   69 (293)
T ss_pred             CceEEEEECCCccchh--h-HHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCCh--------
Confidence            4688888776322110  0 11233466778888888877654321 1110   001135899999999443        


Q ss_pred             HHHHHHHHHHHh-cCCcEEE-EchHH-HHHHHHhC
Q 033165           79 CKLIALLKQLDS-LRKKVLG-ICFGH-QVRAITVF  110 (126)
Q Consensus        79 ~~~~~~i~~~~~-~~~PvlG-IC~G~-Q~la~~~G  110 (126)
                        +.+.++.+.. .+.|.+| |=.|- =.+++.+|
T Consensus        70 --l~~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~  102 (293)
T TIGR00147        70 --INEVVNALIQLDDIPALGILPLGTANDFARSLG  102 (293)
T ss_pred             --HHHHHHHHhcCCCCCcEEEEcCcCHHHHHHHcC
Confidence              3334444443 3567777 44442 23455555

The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
3m3p_A	250	Glutamine amido transferase; structural genomics,	3e-19
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	3e-16
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	9e-14

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Length = 250

 Score = 79.1 bits (195), Expect = 3e-19
 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 12/107 (11%)

Query: 1   MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSY 59
           M  K   ++  +              G F   LA E   + V  + R +  P +      
Sbjct: 1   MSLKPVMIIQFSASE---------GPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIR--DC 49

Query: 60  DGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRA 106
            G  + G    A+ +  W+  L+AL++   + R  V+G C G Q+ A
Sbjct: 50  SGLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLA 96

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Length = 239

 Score = 71.0 bits (174), Expect = 3e-16
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 27  GVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHGNDV--WICKLIA 83
           G+   +  E+  ++D     +GE      +   Y   V+ G    A+  +   ++     
Sbjct: 27  GMMEDIFREKNWSFDYLDTPKGEKLERPLE--EYSLVVLLGGYMGAYEEEKYPFLKYEFQ 84

Query: 84  LLKQLDSLRKKVLGICFGHQVRA 106
           L++++       LGIC G Q+ A
Sbjct: 85  LIEEILKKEIPFLGICLGSQMLA 107

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} Length = 236

 Score = 64.4 bits (157), Expect = 9e-14
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 26  FGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHGND-----VWIC 79
            G ++   A  G    +  V R E  P D D   +D  ++ G                  
Sbjct: 14  PGAYLAWAALRGHDVSMTKVYRYEKLPKDID--DFDMLILMGGPQSPSSTKKEFPYYDAQ 71

Query: 80  KLIALLKQLDSLRKKVLGICFGHQVRA 106
             + L+++     K ++G+C G Q+  
Sbjct: 72  AEVKLIQKAAKSEKIIVGVCLGAQLMG 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
3m3p_A	250	Glutamine amido transferase; structural genomics,	99.91
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	99.88
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	99.84
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	99.8
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	99.79
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	99.78
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	99.78
2a9v_A	212	GMP synthase; structural genomics, joint center fo	99.77
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	99.75
3uow_A	556	GMP synthetase; structural genomics consortium, SG	99.73
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	99.72
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	99.72
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	99.72
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.72
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	99.7
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	99.69
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	99.69
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	99.68
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	99.68
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	99.67
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	99.66
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	99.65
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.65
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	99.63
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	99.61
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	99.61
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	99.61
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	99.6
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	99.58
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	99.57
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	99.54
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	99.52
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	99.52
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	99.47
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	99.46
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	99.07
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	99.03
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	99.0
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	98.96
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	98.96
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	98.96
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	98.96
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	98.92
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	98.89
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	98.87
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	98.84
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	98.77
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	98.75
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	98.75
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	98.75
3gra_A	202	Transcriptional regulator, ARAC family; transcript	98.69
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	98.67
3er6_A	209	Putative transcriptional regulator protein; struct	98.66
2fex_A	188	Conserved hypothetical protein; structural genomic	98.65
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	98.63
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	98.59
1u9c_A	224	APC35852; structural genomics, protein structure i	98.59
3n7t_A	247	Macrophage binding protein; seattle structural gen	98.55
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	98.52
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	98.44
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	98.43
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	98.41
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	98.41
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	98.41
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	98.4
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	98.39
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	98.31
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	98.3
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	98.21
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	98.2
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	97.7
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	97.41
2a5l_A	200	Trp repressor binding protein WRBA; APC5760, PA094	95.61
1u0t_A	307	Inorganic polyphosphate/ATP-NAD kinase; alpha-beta	95.52
2zki_A	199	199AA long hypothetical Trp repressor binding prot	95.03
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	94.99
3pzy_A	164	MOG; ssgcid, seattle structural genomics center fo	94.34
1di6_A	195	MOGA, molybdenum cofactor biosynthetic enzyme; MOC	93.91
2r47_A	157	Uncharacterized protein MTH_862; unknown function,	93.89
4e5v_A	281	Putative THUA-like protein; THUA-like proteins, tr	93.63
3f6r_A	148	Flavodoxin; FMN binding, oxidized, electron transp	93.51
2gk3_A	256	Putative cytoplasmic protein; STM3548, structural	93.34
2i2c_A	272	Probable inorganic polyphosphate/ATP-NAD kinase 1;	93.29
2qv7_A	337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	92.62
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	92.59
3rfq_A	185	Pterin-4-alpha-carbinolamine dehydratase MOAB2; st	92.51
3kbq_A	172	Protein TA0487; structural genomics, CINA, protein	92.49
2pjk_A	178	178AA long hypothetical molybdenum cofactor biosyn	92.36
1z0s_A	278	Probable inorganic polyphosphate/ATP-NAD kinase; A	92.22
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	92.16
2an1_A	292	Putative kinase; structural genomics, PSI, protein	92.11
1y5e_A	169	Molybdenum cofactor biosynthesis protein B; struct	92.01
1e2b_A	106	Enzyme IIB-cellobiose; phosphotransferase system,	91.99
1t0b_A	252	THUA-like protein; trehalose metabolism, NCS symme	91.94
2ark_A	188	Flavodoxin; FMN, structural genomics, PSI, structu	91.54
1mkz_A	172	Molybdenum cofactor biosynthesis protein B; MAD, W	91.51
4gi5_A	280	Quinone reductase; protein structure initiative, F	90.88
1ydg_A	211	Trp repressor binding protein WRBA; tetramer, stru	90.75
3b6i_A	198	Flavoprotein WRBA; flavoproteins, NADH:quinone oxi	90.59
1t5b_A	201	Acyl carrier protein phosphodiesterase; structural	90.56
2g2c_A	167	Putative molybdenum cofactor biosynthesis protein;	90.43
2vzf_A	197	NADH-dependent FMN reductase; oxidoreductase; 2.50	90.38
3iwt_A	178	178AA long hypothetical molybdenum cofactor biosy	89.86
3klb_A	162	Putative flavoprotein; structural genomi center fo	89.76
2is8_A	164	Molybdopterin biosynthesis enzyme, MOAB; globular	89.14
2q62_A	247	ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobi	89.09
2zuv_A	759	Lacto-N-biose phosphorylase; beta-alpha-barrel, TI	89.06
2hna_A	147	Protein MIOC, flavodoxin; alpha-beta sandwich, fla	88.38
1f4p_A	147	Flavodoxin; electron transport, flavoprotein, FMN,	88.11
1rtt_A	193	Conserved hypothetical protein; protein structure	87.06
3h75_A	350	Periplasmic sugar-binding domain protein; protein	86.99
4hs4_A	199	Chromate reductase; triple-layered, A/B/A structur	86.84
1rli_A	184	Trp repressor binding protein; structural genomics	86.83
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	86.8
4ici_A	171	Putative flavoprotein; PF12682 family protein, fla	86.75
1di0_A	158	Lumazine synthase; transferase; 2.70A {Brucella ab	85.31
3g1w_A	305	Sugar ABC transporter; sugar-binding protein, baci	84.86
3f2v_A	192	General stress protein 14; alpha-beta protein., st	84.48
1uuy_A	167	CNX1, molybdopterin biosynthesis CNX1; chelatase,	84.41
2hpv_A	208	FMN-dependent NADH-azoreductase; structural genomi	84.11
2pbq_A	178	Molybdenum cofactor biosynthesis MOG; molybdopteri	83.2
3qvl_A	245	Putative hydantoin racemase; isomerase; HET: 5HY;	83.13
3l6u_A	293	ABC-type sugar transport system periplasmic compo;	82.82
3edo_A	151	Flavoprotein, putative Trp repressor binding prote	82.77
2i0f_A	157	6,7-dimethyl-8-ribityllumazine synthase 1; lumazin	82.76
1jlj_A	189	Gephyrin; globular alpha/beta fold, structural pro	81.34
2q9u_A	414	A-type flavoprotein; flavodoxin like, beta lactama	80.99
3cs3_A	277	Sugar-binding transcriptional regulator, LACI FAM;	80.77
3s2y_A	199	Chromate reductase; uranium reductase, oxidoreduct	81.76
2c92_A	160	6,7-dimethyl-8-ribityllumazine synthase; transfera	80.48
1ehs_A	48	STB, heat-stable enterotoxin B; disulfide; NMR {Es	80.32

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=99.91  E-value=1.8e-24  Score=161.63  Aligned_cols=111  Identities=23%  Similarity=0.367  Sum_probs=94.1

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCCCCchHHH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHGNDVWIC   79 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~~~~~~~~   79 (126)
                      |+++||+||++.....         ...+.++|++.|.+++++++..++ +|  ++++++|+|||+|||.+++++.+|+.
T Consensus         1 m~~~~vliiqh~~~e~---------~~~i~~~l~~~G~~v~v~~~~~~~~~p--~~~~~~d~lIl~GGp~~~~d~~~~~~   69 (250)
T 3m3p_A            1 MSLKPVMIIQFSASEG---------PGHFGDFLAGEHIPFQVLRMDRSDPLP--AEIRDCSGLAMMGGPMSANDDLPWMP   69 (250)
T ss_dssp             -CCCCEEEEESSSSCC---------CHHHHHHHHHTTCCEEEEEGGGTCCCC--SCGGGSSEEEECCCSSCTTSCCTTHH
T ss_pred             CCCCeEEEEECCCCCC---------HHHHHHHHHHCCCeEEEEeccCCCcCc--CccccCCEEEECCCCCcccccchHHH
Confidence            8899999999976532         345778889999999999987654 33  35789999999999999888789999


Q ss_pred             HHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165           80 KLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT  122 (126)
Q Consensus        80 ~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~  122 (126)
                      .+.++|+++++.++|+||||+|+|+|+.++||+|.+.+ +.+||
T Consensus        70 ~~~~~i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~~~~e~G~  113 (250)
T 3m3p_A           70 TLLALIRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSPHAEIGW  113 (250)
T ss_dssp             HHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCEEEeCCCCceee
Confidence            99999999999999999999999999999999999764 56666

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=99.88  E-value=1.7e-22  Score=149.18  Aligned_cols=108  Identities=18%  Similarity=0.312  Sum_probs=87.3

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCC---CCchHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAH---GNDVWIC   79 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~---~~~~~~~   79 (126)
                      |||+||++...+.         ...+.+++++.|.+++++++..++ +|  ++++++|+|||+|||.++.   ++.+|+.
T Consensus         1 m~i~vi~h~~~e~---------~g~~~~~l~~~g~~~~~~~~~~~~~~p--~~~~~~d~lii~GGp~~~~~~~~~~~~~~   69 (236)
T 3l7n_A            1 MRIHFILHETFEA---------PGAYLAWAALRGHDVSMTKVYRYEKLP--KDIDDFDMLILMGGPQSPSSTKKEFPYYD   69 (236)
T ss_dssp             CEEEEEECCTTSC---------CHHHHHHHHHTTCEEEEEEGGGTCCCC--SCGGGCSEEEECCCSSCTTCCTTTCTTCC
T ss_pred             CeEEEEeCCCCCC---------chHHHHHHHHCCCeEEEEeeeCCCCCC--CCccccCEEEECCCCCCcccccccCcccc
Confidence            5999999876642         234677888899999999987654 33  3578999999999999863   3458985


Q ss_pred             H--HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165           80 K--LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT  122 (126)
Q Consensus        80 ~--~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~  122 (126)
                      .  +.++|+++++.++|+||||+|||+|++++||++.+.+ +.+|+
T Consensus        70 ~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~~~~G~  115 (236)
T 3l7n_A           70 AQAEVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSPKKEIGN  115 (236)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEEEEEEEEE
T ss_pred             hHHHHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecCCCceeee
Confidence            5  8899999999999999999999999999999988753 45554

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=99.84  E-value=9.4e-21  Score=140.26  Aligned_cols=108  Identities=19%  Similarity=0.280  Sum_probs=87.0

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCCCC--chHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHGN--DVWICK   80 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~~~--~~~~~~   80 (126)
                      .||+||++.+...         ...+.++++..|.++.++.....+ +|  +.+.++|+|||+||+.+++++  .+|+..
T Consensus        13 ~~~~~i~~~~~~~---------~~~i~~~l~~~G~~v~v~~~~~~~~~~--~~l~~~Dglil~GG~~~~~~~~~~~~l~~   81 (239)
T 1o1y_A           13 VRVLAIRHVEIED---------LGMMEDIFREKNWSFDYLDTPKGEKLE--RPLEEYSLVVLLGGYMGAYEEEKYPFLKY   81 (239)
T ss_dssp             CEEEEECSSTTSS---------CTHHHHHHHHTTCEEEEECGGGTCCCS--SCGGGCSEEEECCCSCCTTCTTTCTHHHH
T ss_pred             eEEEEEECCCCCC---------chHHHHHHHhCCCcEEEeCCcCccccc--cchhcCCEEEECCCCccccCCccChhHHH
Confidence            6899999977642         234778888899999877765422 23  357889999999999888765  589888


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC--ccccc
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS--KIAGT  122 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~--~~~g~  122 (126)
                      +.++|+++.+.++|+||||+|||+|+.++||++.+.+  +.+|+
T Consensus        82 ~~~~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G~  125 (239)
T 1o1y_A           82 EFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGW  125 (239)
T ss_dssp             HHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCCCcccc
Confidence            9999999988899999999999999999999998754  34443

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=99.80  E-value=2.9e-19  Score=148.18  Aligned_cols=99  Identities=18%  Similarity=0.234  Sum_probs=85.5

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-hHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-VWICKLI   82 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-~~~~~~~   82 (126)
                      ++|+|+++          |++|++++.+++++.|.++++++...   +  ..+.++|+|||+|||.++++.. +|+..+.
T Consensus       447 k~IlviD~----------gdsf~~~l~~~l~~~G~~v~Vv~~d~---~--~~~~~~DgIIlsGGPg~p~d~~~p~i~~~~  511 (645)
T 3r75_A          447 CRALIVDA----------EDHFTAMIAQQLSSLGLATEVCGVHD---A--VDLARYDVVVMGPGPGDPSDAGDPRIARLY  511 (645)
T ss_dssp             CEEEEEES----------SCTHHHHHHHHHHHTTCEEEEEETTC---C--CCGGGCSEEEECCCSSCTTCTTSHHHHHHH
T ss_pred             CEEEEEEC----------CccHHHHHHHHHHHCCCEEEEEECCC---c--ccccCCCEEEECCCCCChhhhhhhhHHHHH
Confidence            58888865          45789999999999999999888542   2  2457899999999999987765 8999999


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      ++|+.+++.++|+||||+|||+|+.++||++.+.+
T Consensus       512 ~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~~  546 (645)
T 3r75_A          512 AWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRRE  546 (645)
T ss_dssp             HHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcCC
Confidence            99999988999999999999999999999998754

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=99.79  E-value=3.6e-19  Score=136.59  Aligned_cols=113  Identities=14%  Similarity=0.115  Sum_probs=85.9

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE--EEccCCCCCC------------C--CCCCCcCEEEEcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV--FHVARGEFPD------------D--DDFGSYDGYVITG   66 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~p~------------~--~~~~~~d~iii~G   66 (126)
                      .+||+||++.+..       +.|..+|.++|.....++++  +++...+.+.            .  .+.++|||+||+|
T Consensus        47 plkI~ILnlmp~k-------~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITG  119 (312)
T 2h2w_A           47 PLEILILNLMPDK-------IKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITG  119 (312)
T ss_dssp             CEEEEEECCCSSH-------HHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECC
T ss_pred             CceEEEEeCCCCc-------CchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECC
Confidence            5799999997664       34778899999877666655  4443333221            1  1247899999999


Q ss_pred             CCCCC--CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCC--ccccCCccccc
Q 033165           67 SCNDA--HGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFS--SHINASKIAGT  122 (126)
Q Consensus        67 ~~~~~--~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg--~v~~~~~~~g~  122 (126)
                      ||...  +++.+|+.++.++++.+.+.++|+||||||+|+++.++||  ++...+|++|+
T Consensus       120 sP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~Gv  179 (312)
T 2h2w_A          120 APVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSGV  179 (312)
T ss_dssp             CSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_pred             CCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEEE
Confidence            99754  4556899999999999988999999999999998887877  55556788775

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=99.78  E-value=3.7e-19  Score=135.98  Aligned_cols=114  Identities=18%  Similarity=0.203  Sum_probs=84.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE--EEccCCCCCC------------C--CCCCCcCEEEEcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV--FHVARGEFPD------------D--DDFGSYDGYVITG   66 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~p~------------~--~~~~~~d~iii~G   66 (126)
                      .+||+||++.+..       +.|..+|.++|.....++++  +++...+.+.            .  ...++|||+||+|
T Consensus        35 plkI~ILnlmp~k-------~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITG  107 (301)
T 2vdj_A           35 ALKIAILNLMPTK-------QETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITG  107 (301)
T ss_dssp             CEEEEEECCCSSH-------HHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECC
T ss_pred             CceEEEEeCCCCc-------CchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECC
Confidence            4799999997764       34778899999877666655  4443222111            0  0246899999999


Q ss_pred             CCCCC--CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCC--ccccCCcccccc
Q 033165           67 SCNDA--HGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFS--SHINASKIAGTA  123 (126)
Q Consensus        67 ~~~~~--~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg--~v~~~~~~~g~~  123 (126)
                      ||.+.  +++.+|+.++.++++.+.++++|+||||||+|+++.++||  ++...+|++|+.
T Consensus       108 ap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~  168 (301)
T 2vdj_A          108 APVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVF  168 (301)
T ss_dssp             CTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEE
T ss_pred             CCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCCCCEEEEE
Confidence            99754  4556899999999999988999999999999997777777  444567887753

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=99.78  E-value=3.9e-19  Score=127.56  Aligned_cols=95  Identities=17%  Similarity=0.219  Sum_probs=72.3

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC--CcCEEEEcCCCCCCCCCc--hHHHHH
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG--SYDGYVITGSCNDAHGND--VWICKL   81 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~--~~d~iii~G~~~~~~~~~--~~~~~~   81 (126)
                      |+||++          +++|+.++.++|++.|.++.+++....++   +++.  ++|+||++||+.++.+..  +|   +
T Consensus         4 i~iid~----------~~s~~~~~~~~l~~~G~~~~v~~~~~~~~---~~~~~~~~dglil~gG~~~~~~~~~~~~---~   67 (195)
T 1qdl_B            4 TLIIDN----------YDSFVYNIAQIVGELGSYPIVIRNDEISI---KGIERIDPDRLIISPGPGTPEKREDIGV---S   67 (195)
T ss_dssp             EEEEEC----------SCSSHHHHHHHHHHTTCEEEEEETTTSCH---HHHHHHCCSEEEECCCSSCTTSHHHHTT---H
T ss_pred             EEEEEC----------CCchHHHHHHHHHhCCCEEEEEeCCCCCH---HHHhhCCCCEEEECCCCCChhhhhhhhH---H
Confidence            999984          45677888999999999999888542111   1233  599999999988765421  23   3


Q ss_pred             HHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           82 IALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      .++++++ +.++|+||||+|||+|+.++||++.+.+
T Consensus        68 ~~~i~~~-~~~~PvLGIC~G~QlL~~~~gg~v~~~~  102 (195)
T 1qdl_B           68 LDVIKYL-GKRTPILGVCLGHQAIGYAFGAKIRRAR  102 (195)
T ss_dssp             HHHHHHH-TTTSCEEEETHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHh-cCCCcEEEEehHHHHHHHHhCCEEeccC
Confidence            4667764 6799999999999999999999998654

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=99.77  E-value=4.1e-19  Score=129.27  Aligned_cols=100  Identities=24%  Similarity=0.221  Sum_probs=76.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC-CCCCCCC--chHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS-CNDAHGN--DVWIC   79 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~-~~~~~~~--~~~~~   79 (126)
                      |+||+++++..          +|+.++.++|++.|.++.+++...    .++++.++|+|||+|| +.++++.  .+|+.
T Consensus        13 ~~~i~~id~~~----------~~~~~~~~~l~~~G~~~~vv~~~~----~~~~l~~~DglIl~GG~p~~~~~~~~~~~l~   78 (212)
T 2a9v_A           13 MLKIYVVDNGG----------QWTHREWRVLRELGVDTKIVPNDI----DSSELDGLDGLVLSGGAPNIDEELDKLGSVG   78 (212)
T ss_dssp             CCBEEEEEESC----------CTTCHHHHHHHHTTCBCCEEETTS----CGGGGTTCSEEEEEEECSCGGGTGGGHHHHH
T ss_pred             cceEEEEeCCC----------ccHHHHHHHHHHCCCEEEEEeCCC----CHHHHhCCCEEEECCCCCCCCcccccchhHH
Confidence            68999997654          577788999999999998887542    1235667999999999 8887764  24442


Q ss_pred             HHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165           80 KLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT  122 (126)
Q Consensus        80 ~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~  122 (126)
                            +.+.+.++|+||||+|||+|+.++||++.+.+ ..+|+
T Consensus        79 ------~~~~~~~~PiLGIC~G~Qll~~~lGg~v~~~~~~~~G~  116 (212)
T 2a9v_A           79 ------KYIDDHNYPILGICVGAQFIALHFGASVVKAKHPEFGK  116 (212)
T ss_dssp             ------HHHHHCCSCEEEETHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ------HHHHhCCCCEEEEChHHHHHHHHhCCEEEcCCCcccCc
Confidence                  22346799999999999999999999998643 33443

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=99.75  E-value=2.4e-18  Score=122.58  Aligned_cols=98  Identities=16%  Similarity=0.200  Sum_probs=73.8

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      |+|+++...          |+.++.++|++.|.++.+++... . +  +++  .++|+||++||+ ++.+ .   ..+.+
T Consensus         3 i~iid~~~~----------~~~~~~~~l~~~G~~~~~~~~~~-~-~--~~~~~~~~dglil~Gg~-~~~~-~---~~~~~   63 (189)
T 1wl8_A            3 IVIMDNGGQ----------YVHRIWRTLRYLGVETKIIPNTT-P-L--EEIKAMNPKGIIFSGGP-SLEN-T---GNCEK   63 (189)
T ss_dssp             EEEEECSCT----------THHHHHHHHHHTTCEEEEEETTC-C-H--HHHHHTCCSEEEECCCS-CTTC-C---TTHHH
T ss_pred             EEEEECCCc----------hHHHHHHHHHHCCCeEEEEECCC-C-h--HHhcccCCCEEEECCCC-Chhh-h---hhHHH
Confidence            999987654          56678899999999999887532 1 1  123  359999999998 5533 2   22456


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHHhCCccccC-Cccccc
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHINA-SKIAGT  122 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~-~~~~g~  122 (126)
                      +++++.+.++|+||||+|||+|+.++||++.+. ...+|+
T Consensus        64 ~i~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~~~G~  103 (189)
T 1wl8_A           64 VLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGEKAEYSL  103 (189)
T ss_dssp             HHHTGGGTCSCEEEETHHHHHHHHHHTCEEEECSCCSCEE
T ss_pred             HHHHHhhCCCeEEEEcHHHHHHHHHhCCceecCCCcccCc
Confidence            777776789999999999999999999999873 344554

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=99.73  E-value=1.2e-17  Score=136.55  Aligned_cols=104  Identities=18%  Similarity=0.238  Sum_probs=78.8

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCc-hHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGND-VWIC   79 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~-~~~~   79 (126)
                      ..||+||+++.          +|++.+.+.+++.|..++++.... + +  +++  .++||||+||||.+++++. +|+.
T Consensus         7 ~~~IlilD~Gs----------~~~~~I~r~lre~Gv~~eiv~~~~-~-~--~~i~~~~~dgIIlsGGp~s~~~~~~~~~~   72 (556)
T 3uow_A            7 YDKILVLNFGS----------QYFHLIVKRLNNIKIFSETKDYGV-E-L--KDIKDMNIKGVILSGGPYSVTEAGSPHLK   72 (556)
T ss_dssp             CCEEEEEESSC----------TTHHHHHHHHHHTTCCEEEEETTC-C-G--GGTTTSCEEEEEECCCSCCTTSTTCCCCC
T ss_pred             CCEEEEEECCC----------ccHHHHHHHHHHCCCeEEEEECCC-C-H--HHHhhcCCCEEEECCCCCcccccCCcchh
Confidence            46899998865          477889999999999999887532 1 1  123  3799999999999887643 4433


Q ss_pred             HHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC-Cccccc
Q 033165           80 KLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA-SKIAGT  122 (126)
Q Consensus        80 ~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~-~~~~g~  122 (126)
                      .  ++++.+.+.++|+||||+|||+|++++||++.++ +.+.|.
T Consensus        73 ~--~l~~~a~~~g~PvLGIC~G~QlLa~~lGG~V~~~~~~E~G~  114 (556)
T 3uow_A           73 K--EVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGC  114 (556)
T ss_dssp             H--HHHHHHHHTTCCEEEETHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             H--HHHHHhhhcCCCEEEECHHHHHHHHHhCCcEecCCCcccCC
Confidence            2  3455566679999999999999999999999875 344443

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=99.72  E-value=1.2e-18  Score=124.63  Aligned_cols=93  Identities=17%  Similarity=0.242  Sum_probs=69.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      |+||+|+++.          ++|++++ ++|++.|.++.+++.     +  +++.++|+||++||+.+.+++..|...+.
T Consensus         1 ~m~I~il~~~----------~~~~~~~-~~l~~~g~~~~~~~~-----~--~~l~~~d~iil~GG~~~~~~~~~~~~~~~   62 (196)
T 2nv0_A            1 MLTIGVLGLQ----------GAVREHI-HAIEACGAAGLVVKR-----P--EQLNEVDGLILPGGESTTMRRLIDTYQFM   62 (196)
T ss_dssp             CCEEEEECSS----------SCCHHHH-HHHHHTTCEEEEECS-----G--GGGGGCSEEEECCSCHHHHHHHHHHTTCH
T ss_pred             CcEEEEEEcc----------CCcHHHH-HHHHHCCCEEEEeCC-----h--HHHhhCCEEEECCCChhhHHHHhhhHHHH
Confidence            4799999852          3455655 778888988776652     1  24678999999999755544334444457


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCcc
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSH  113 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v  113 (126)
                      ++++++.++++|+||||+|+|+|++++|+++
T Consensus        63 ~~i~~~~~~~~pilgIC~G~q~l~~~~gg~~   93 (196)
T 2nv0_A           63 EPLREFAAQGKPMFGTCAGLIILAKEIAGSD   93 (196)
T ss_dssp             HHHHHHHHTTCCEEEETHHHHHHSBCCC---
T ss_pred             HHHHHHHHCCCcEEEECHHHHHHHHHhcCCC
Confidence            8899988899999999999999999999964

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=99.72  E-value=8.4e-19  Score=127.95  Aligned_cols=95  Identities=20%  Similarity=0.242  Sum_probs=71.7

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK   80 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~   80 (126)
                      |.++||+|+++.          ++|.+++ +.|++.|.++.++...       ++++++|+|||+||+.+.+++..|...
T Consensus        21 ~~~~~I~il~~~----------~~~~~~~-~~l~~~G~~~~~~~~~-------~~l~~~Dglil~GG~~~~~~~~~~~~~   82 (219)
T 1q7r_A           21 QSNMKIGVLGLQ----------GAVREHV-RAIEACGAEAVIVKKS-------EQLEGLDGLVLPGGESTTMRRLIDRYG   82 (219)
T ss_dssp             CCCCEEEEESCG----------GGCHHHH-HHHHHTTCEEEEECSG-------GGGTTCSEEEECCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEEEeCC----------CCcHHHH-HHHHHCCCEEEEECCH-------HHHhhCCEEEECCCChHHHHHHhhhhH
Confidence            556899999652          2345544 6778889888776531       245689999999997654433334445


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCcc
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSH  113 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v  113 (126)
                      +.++|+++.+.++|+||||+|+|+|+.++|+++
T Consensus        83 ~~~~i~~~~~~~~PilGIC~G~QlL~~~~gg~~  115 (219)
T 1q7r_A           83 LMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYD  115 (219)
T ss_dssp             CHHHHHHHHHTTCCEEEETTHHHHHEEEEESSC
T ss_pred             HHHHHHHHHHcCCeEEEECHHHHHHHHHhCCCC
Confidence            678899998899999999999999999999976

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=99.72  E-value=1.2e-17  Score=119.47  Aligned_cols=94  Identities=14%  Similarity=0.125  Sum_probs=69.7

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC------CCcCEEEEcCCCCCCCCCchH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF------GSYDGYVITGSCNDAHGNDVW   77 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~------~~~d~iii~G~~~~~~~~~~~   77 (126)
                      +||+||+          ++++|++++.++|++.|.++.+++...   +. +++      .+.+++|++||+.++.+. .+
T Consensus         1 ~~i~iiD----------n~~s~~~~i~~~l~~~G~~~~v~~~~~---~~-~~i~~~l~~~~~~~iil~gGpg~~~~~-~~   65 (192)
T 1i1q_B            1 ADILLLD----------NIDSFTWNLADQLRTNGHNVVIYRNHI---PA-QTLIDRLATMKNPVLMLSPGPGVPSEA-GC   65 (192)
T ss_dssp             CEEEEEE----------CSCSSHHHHHHHHHHTTCEEEEEETTS---CS-HHHHHHHTTCSSEEEEECCCSSCGGGS-TT
T ss_pred             CcEEEEE----------CCccHHHHHHHHHHHCCCeEEEEECCC---CH-HHHHHHhhhccCCeEEECCCCcCchhC-ch
Confidence            4899997          467889999999999999998887532   11 112      135579999999887542 23


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165           78 ICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA  116 (126)
Q Consensus        78 ~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~  116 (126)
                      ..   ++++. ++.++|+||||+|||+|++++||++.+.
T Consensus        66 ~~---~l~~~-~~~~~PilGIC~G~Qll~~~~Gg~v~~~  100 (192)
T 1i1q_B           66 MP---ELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQA  100 (192)
T ss_dssp             HH---HHHHH-HBTTBCEEEETHHHHHHHHHTSCCCCC-
T ss_pred             HH---HHHHH-HhcCCCEEEECcChHHHHHHhCCEEEeC
Confidence            22   34443 4678999999999999999999998865

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=99.72  E-value=1.1e-17  Score=136.04  Aligned_cols=100  Identities=16%  Similarity=0.216  Sum_probs=69.1

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC--CcCEEEEcCCCCCCCCCc-hHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG--SYDGYVITGSCNDAHGND-VWIC   79 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~--~~d~iii~G~~~~~~~~~-~~~~   79 (126)
                      ..||+||+++.          +|+..+.+.+++.|..++++.....  +  +++.  ++|||||||||.+++++. ++  
T Consensus        10 ~~~I~IlD~g~----------~~~~~i~r~lr~~Gv~~~i~p~~~~--~--~~i~~~~~dgIILsGGp~sv~~~~~~~--   73 (527)
T 3tqi_A           10 QHRILILDFGS----------QYAQLIARRVREIGVYCELMPCDID--E--ETIRDFNPHGIILSGGPETVTLSHTLR--   73 (527)
T ss_dssp             CSEEEEEECSC----------TTHHHHHHHHHHHTCEEEEEETTCC--S--SSSTTTCCSEEEECCCCC-----------
T ss_pred             CCeEEEEECCC----------ccHHHHHHHHHHCCCeEEEEECCCC--H--HHHHhcCCCEEEECCcCcccccCCChh--
Confidence            46999998865          3677889999999999988864321  1  2333  469999999999887642 22  


Q ss_pred             HHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165           80 KLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT  122 (126)
Q Consensus        80 ~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~  122 (126)
                          ..+.+++.++|+||||+|||+|++++||++.+.+ ..+|+
T Consensus        74 ----~~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~~~~e~G~  113 (527)
T 3tqi_A           74 ----APAFIFEIGCPVLGICYGMQTMAYQLGGKVNRTAKAEFGH  113 (527)
T ss_dssp             ----CCCSTTTSSSCEEEETHHHHHHHHHSSSCBC-----CEEE
T ss_pred             ----hHHHHHhcCCCEEEEChHHHHHHHHcCCeEEeCCCccccc
Confidence                2334567799999999999999999999998753 44554

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=99.70  E-value=2.1e-18  Score=124.59  Aligned_cols=96  Identities=15%  Similarity=0.163  Sum_probs=66.3

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK   80 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~   80 (126)
                      |+ +||+|++++..+          ...+.++|++.|.++++++   +  |  +++.++|+||+||+.... +...+. +
T Consensus         1 M~-~~I~iiD~g~~n----------~~si~~al~~~G~~~~v~~---~--~--~~l~~~D~lilPG~g~~~-~~~~~~-~   60 (211)
T 4gud_A            1 MT-QNVVIIDTGCAN----------ISSVKFAIERLGYAVTISR---D--P--QVVLAADKLFLPGVGTAS-EAMKNL-T   60 (211)
T ss_dssp             ---CCEEEECCCCTT----------HHHHHHHHHHTTCCEEEEC---C--H--HHHHHCSEEEECCCSCHH-HHHHHH-H
T ss_pred             CC-CEEEEEECCCCh----------HHHHHHHHHHCCCEEEEEC---C--H--HHHhCCCEEEECCCCCHH-HHHHHH-H
Confidence            55 489999987763          3457889999999998764   1  2  356789999999864321 111111 2


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA  116 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~  116 (126)
                      ..++++.+.+.++|+||||+|||+|++++|+++.+.
T Consensus        61 ~~~~i~~~~~~~~PvlGIClG~QlL~~~~g~~~~~~   96 (211)
T 4gud_A           61 ERDLIELVKRVEKPLLGICLGMQLLGKLSEEKGQKA   96 (211)
T ss_dssp             HTTCHHHHHHCCSCEEEETHHHHTTSSEECCC----
T ss_pred             hcChHHHHHHcCCCEEEEchhHhHHHHHhCCccccc
Confidence            234567777789999999999999999999987653

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=99.69  E-value=7.8e-17  Score=126.48  Aligned_cols=96  Identities=18%  Similarity=0.207  Sum_probs=73.9

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      +||+|++++..            .++.++|.+.|.++.++..... .... ...++|||||+|||.++.+.    ....+
T Consensus       191 ~~V~viD~G~k------------~ni~r~L~~~G~~v~vvp~~~~-~e~i-~~~~~DGliLsGGPgdp~~~----~~~~~  252 (379)
T 1a9x_B          191 FHVVAYDFGAK------------RNILRMLVDRGCRLTIVPAQTS-AEDV-LKMNPDGIFLSNGPGDPAPC----DYAIT  252 (379)
T ss_dssp             EEEEEEESSCC------------HHHHHHHHHTTEEEEEEETTCC-HHHH-HTTCCSEEEECCCSBCSTTC----HHHHH
T ss_pred             CEEEEEECCCh------------HHHHHHHHHCCCEEEEEeccCC-HHHH-hhcCCCEEEEeCCCCChHHH----HHHHH
Confidence            58999999664            2367888889999988875321 0000 11369999999999887643    34667


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      +++++++.++|+||||+|||+|+.++||++.+.+
T Consensus       253 ~Ir~~~~~~~PILGIClG~QLLa~A~GG~v~k~~  286 (379)
T 1a9x_B          253 AIQKFLETDIPVFGICLGHQLLALASGAKTVKMK  286 (379)
T ss_dssp             HHHHHTTSCCCEEEETHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHcCCCEEEECchHHHHHHHhCcEEEecc
Confidence            8888888899999999999999999999998753

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=99.69  E-value=1e-17  Score=118.94  Aligned_cols=90  Identities=19%  Similarity=0.189  Sum_probs=64.3

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      |||+||++.          |+|.+++ ++|++.|.++.+++.     +  +.+.++|+||++||+.+++++..+...+.+
T Consensus         1 m~i~vl~~~----------g~~~~~~-~~l~~~G~~~~~~~~-----~--~~~~~~dglil~GG~~~~~~~~~~~~~~~~   62 (186)
T 2ywj_A            1 MIIGVLAIQ----------GDVEEHE-EAIKKAGYEAKKVKR-----V--EDLEGIDALIIPGGESTAIGKLMKKYGLLE   62 (186)
T ss_dssp             CEEEEECSS----------SCCHHHH-HHHHHTTSEEEEECS-----G--GGGTTCSEEEECCSCHHHHHHHHHHTTHHH
T ss_pred             CEEEEEecC----------cchHHHH-HHHHHCCCEEEEECC-----h--HHhccCCEEEECCCCchhhhhhhhccCHHH
Confidence            589999763          3455544 788888988877652     1  246789999999998655432222222444


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHI  114 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~  114 (126)
                      .++   +.++|+||||+|||+|+.++||++.
T Consensus        63 ~i~---~~~~PilGIC~G~Qll~~~~gg~~~   90 (186)
T 2ywj_A           63 KIK---NSNLPILGTCAGMVLLSKGTGINQI   90 (186)
T ss_dssp             HHH---TCCCCEEEETHHHHHHSSCCSSCCC
T ss_pred             HHH---hcCCcEEEECHHHHHHHHHhCCCcC
Confidence            444   6789999999999999999999853

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=99.68  E-value=2.3e-17  Score=134.02  Aligned_cols=102  Identities=14%  Similarity=0.228  Sum_probs=76.6

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC--CcCEEEEcCCCCCCCCCc-hH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG--SYDGYVITGSCNDAHGND-VW   77 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~--~~d~iii~G~~~~~~~~~-~~   77 (126)
                      |..+||+||+++..          |+..+.+.+++.|..++++.....    .+++.  ++|||||||||.+++++. +|
T Consensus         5 ~~~~~IlIlD~g~~----------~~~~i~r~lr~~G~~~~i~p~~~~----~~~i~~~~~dgiILsGGp~s~~~~~~~~   70 (525)
T 1gpm_A            5 IHKHRILILDFGSQ----------YTQLVARRVRELGVYCELWAWDVT----EAQIRDFNPSGIILSGGPESTTEENSPR   70 (525)
T ss_dssp             TTSSEEEEEECSCT----------THHHHHHHHHHTTCEEEEEESCCC----HHHHHHHCCSEEEECCCSSCTTSTTCCC
T ss_pred             CCCCEEEEEECCCc----------cHHHHHHHHHHCCCEEEEEECCCC----HHHHhccCCCEEEECCcCccccccCCcc
Confidence            45678999988654          667788999999999888764321    11233  359999999999887653 44


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165           78 ICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT  122 (126)
Q Consensus        78 ~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~  122 (126)
                      +.      +.+.+.++|+||||+|||+|+.++||++.+.+ ...|+
T Consensus        71 ~~------~~~~~~g~PvLGIC~G~Qlla~~~GG~V~~~~~~e~G~  110 (525)
T 1gpm_A           71 AP------QYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGY  110 (525)
T ss_dssp             CC------GGGGTSSSCEEEETHHHHHHHHHHTCEEECCSSCEEEE
T ss_pred             hH------HHHHHCCCCEEEEChHHHHHHHHcCCEEEeCCCcccce
Confidence            32      34456799999999999999999999998753 45554

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=99.68  E-value=1.7e-17  Score=125.03  Aligned_cols=103  Identities=15%  Similarity=0.148  Sum_probs=77.7

Q ss_pred             CeEEEE-EcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC------CCCCCcCEEEEcCCCCCCCCCch
Q 033165            4 KKFAVL-LCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD------DDFGSYDGYVITGSCNDAHGNDV   76 (126)
Q Consensus         4 ~ki~Il-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~------~~~~~~d~iii~G~~~~~~~~~~   76 (126)
                      .||+|+ +.+   ..+.++|.++...+.++..+.+.+++++.+...++...      +.+.++|+|||+||+.+.     
T Consensus         9 ~~Iaivg~y~---~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~-----   80 (273)
T 2w7t_A            9 VRIAFVGKYL---QDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGNR-----   80 (273)
T ss_dssp             EEEEEEECCH---HHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTTT-----
T ss_pred             CEEEEEeCCC---cCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCCc-----
Confidence            688888 332   24556788899999888878888888887654322211      235689999999997542     


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165           77 WICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI  114 (126)
Q Consensus        77 ~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~  114 (126)
                      ......++++.+.+.++|+||||+|||+|+.++||++.
T Consensus        81 ~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~  118 (273)
T 2w7t_A           81 GVDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVV  118 (273)
T ss_dssp             THHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTT
T ss_pred             CchhHHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccc
Confidence            12346678888888899999999999999999999984

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=99.67  E-value=9.1e-18  Score=122.78  Aligned_cols=93  Identities=19%  Similarity=0.271  Sum_probs=64.5

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCC-chHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGN-DVWICK   80 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~-~~~~~~   80 (126)
                      +||+||+++..          |...+.+.|++.|.++.++.+...  +  +++  .++|+||||||+.++++. .+|+  
T Consensus        25 ~~I~iiD~g~~----------~~~~i~~~l~~~G~~~~vv~~~~~--~--~~l~~~~~dglil~Gg~~~~~~~~~~~~--   88 (218)
T 2vpi_A           25 GAVVILDAGAQ----------YGKVIDRRVRELFVQSEIFPLETP--A--FAIKEQGFRAIIISGGPNSVYAEDAPWF--   88 (218)
T ss_dssp             TCEEEEECSTT----------TTHHHHHHHHHTTCCEEEECTTCC--H--HHHHHHTCSEEEEEC---------CCCC--
T ss_pred             CeEEEEECCCc----------hHHHHHHHHHHCCCEEEEEECCCC--h--HHHhhcCCCEEEECCCCcccccccchhH--
Confidence            68999998765          455678889999999888875421  1  122  459999999999876542 2332  


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA  116 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~  116 (126)
                          .+.+.+.++|+||||+|||+|+.++||++.+.
T Consensus        89 ----~~~~~~~~~PilGIC~G~Qll~~~~GG~v~~~  120 (218)
T 2vpi_A           89 ----DPAIFTIGKPVLGICYGMQMMNKVFGGTVHKK  120 (218)
T ss_dssp             ----CGGGGTSSCCEEEETHHHHHHHHHTTCCEEEE
T ss_pred             ----HHHHHHcCCCEEEEcHHHHHHHHHhCCceEeC
Confidence                22345678999999999999999999999864

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=99.66  E-value=9.6e-18  Score=122.63  Aligned_cols=96  Identities=19%  Similarity=0.191  Sum_probs=67.8

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC---CCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE---GETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVW   77 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~   77 (126)
                      |+++||+|+.....          |.+ ..++|++.   |.++..++.     +  +.+.++|+|||+||+.+.++...+
T Consensus         1 ~~~~~I~Il~~~~~----------~~~-~~~~l~~~~~~G~~~~~~~~-----~--~~l~~~dglil~GG~~~~~~~~~~   62 (227)
T 2abw_A            1 MSEITIGVLSLQGD----------FEP-HINHFIKLQIPSLNIIQVRN-----V--HDLGLCDGLVIPGGESTTVRRCCA   62 (227)
T ss_dssp             -CCEEEEEECTTSC----------CHH-HHHHHHTTCCTTEEEEEECS-----H--HHHHTCSEEEECCSCHHHHHHHTT
T ss_pred             CCCcEEEEEeCCCC----------cHH-HHHHHHHhccCCeEEEEEcC-----c--cccccCCEEEECCCcHHHHHHHHH
Confidence            77889999977532          222 24566666   766555441     1  245679999999997544332223


Q ss_pred             H--HHHHHHHHHHHhc-CCcEEEEchHHHHHHHHhCCccc
Q 033165           78 I--CKLIALLKQLDSL-RKKVLGICFGHQVRAITVFSSHI  114 (126)
Q Consensus        78 ~--~~~~~~i~~~~~~-~~PvlGIC~G~Q~la~~~Gg~v~  114 (126)
                      .  ..+.++|+++.+. ++|+||||+|+|+|++++|+++.
T Consensus        63 ~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~~gg~~~  102 (227)
T 2abw_A           63 YENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKL  102 (227)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEEEECCCS
T ss_pred             HhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHHhcCCcc
Confidence            2  3467889998899 99999999999999999999763

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=99.65  E-value=1e-16  Score=119.45  Aligned_cols=88  Identities=16%  Similarity=0.171  Sum_probs=62.3

Q ss_pred             HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCC---CCCCCc--hH-------H-HHHHHHHHHHHhcCCc
Q 033165           28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCN---DAHGND--VW-------I-CKLIALLKQLDSLRKK   94 (126)
Q Consensus        28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~---~~~~~~--~~-------~-~~~~~~i~~~~~~~~P   94 (126)
                      .+.+.+.++|....++.+..+. ...+.++++|||||+||+.   +.|++.  +|       . ....++++++++.++|
T Consensus        32 ~~~~~l~~aG~~pv~lp~~~~~-~~~~~l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~P  110 (254)
T 3fij_A           32 RYVDAIQKVGGFPIALPIDDPS-TAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKP  110 (254)
T ss_dssp             HHHHHHHHHTCEEEEECCCCGG-GHHHHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCEEEEEeCCCch-HHHHHHhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCC
Confidence            3556777788887777643221 0011256899999999975   223322  22       1 2366889999999999


Q ss_pred             EEEEchHHHHHHHHhCCccccC
Q 033165           95 VLGICFGHQVRAITVFSSHINA  116 (126)
Q Consensus        95 vlGIC~G~Q~la~~~Gg~v~~~  116 (126)
                      +||||+|||+|+.++||++.+.
T Consensus       111 iLGIC~G~Qll~~a~Gg~v~~~  132 (254)
T 3fij_A          111 IFAICRGMQLVNVALGGTLYQD  132 (254)
T ss_dssp             EEEETHHHHHHHHHTTCCEESS
T ss_pred             EEEECHHHHHHHHHhCCceecc
Confidence            9999999999999999998753

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.65  E-value=2.4e-16  Score=113.55  Aligned_cols=99  Identities=14%  Similarity=0.115  Sum_probs=73.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCC----chHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGN----DVWI   78 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~----~~~~   78 (126)
                      |+||+|++++.....         ..+.++|++.|.++.++...       +++.++|+|||+||+....+.    ..+.
T Consensus         2 ~~~i~il~~~~~~~~---------~~~~~~l~~~g~~~~~~~~~-------~~~~~~d~lil~Gg~~~~~~~~~~~~~~~   65 (213)
T 3d54_D            2 KPRACVVVYPGSNCD---------RDAYHALEINGFEPSYVGLD-------DKLDDYELIILPGGFSYGDYLRPGAVAAR   65 (213)
T ss_dssp             CCEEEEECCTTEEEH---------HHHHHHHHTTTCEEEEECTT-------CCCSSCSEEEECEECGGGGCSSTTHHHHT
T ss_pred             CcEEEEEEcCCCCcc---------HHHHHHHHHCCCEEEEEecC-------CCcccCCEEEECCCCchhhhhcccccccc
Confidence            579999998776421         12467888889888877632       146789999999996432211    1122


Q ss_pred             HHHHHHHHHHHhcCCcEEEEchHHHHHHHH--hCCccccCC
Q 033165           79 CKLIALLKQLDSLRKKVLGICFGHQVRAIT--VFSSHINAS  117 (126)
Q Consensus        79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~--~Gg~v~~~~  117 (126)
                      ..+.++|+++.+.++|++|||+|+|+|+.+  +++++.+.+
T Consensus        66 ~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~~  106 (213)
T 3d54_D           66 EKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNS  106 (213)
T ss_dssp             STTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECCS
T ss_pred             HHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecCC
Confidence            446788898888899999999999999999  999988653

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.63  E-value=6.4e-17  Score=114.91  Aligned_cols=91  Identities=12%  Similarity=0.110  Sum_probs=65.5

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      +++|+|+.....          +.+ +.++|++.|.++.+++..       ++++++|+||++||+....++..|...+.
T Consensus         2 ~p~Igi~~~~~~----------~~~-~~~~l~~~G~~~~~~~~~-------~~l~~~dglil~GG~~~~~~~~~~~~~~~   63 (191)
T 2ywd_A            2 RGVVGVLALQGD----------FRE-HKEALKRLGIEAKEVRKK-------EHLEGLKALIVPGGESTTIGKLAREYGIE   63 (191)
T ss_dssp             -CCEEEECSSSC----------HHH-HHHHHHTTTCCCEEECSG-------GGGTTCSEEEECSSCHHHHHHHHHHTTHH
T ss_pred             CcEEEEEecCCc----------hHH-HHHHHHHCCCEEEEeCCh-------hhhccCCEEEECCCChhhhHHhhhhhhHH
Confidence            578999976432          222 567888899988877521       14567999999999522211112233467


Q ss_pred             HHHHHHHhcC-CcEEEEchHHHHHHHHhCC
Q 033165           83 ALLKQLDSLR-KKVLGICFGHQVRAITVFS  111 (126)
Q Consensus        83 ~~i~~~~~~~-~PvlGIC~G~Q~la~~~Gg  111 (126)
                      ++++++.+.+ +|+||||+|||+|++++|+
T Consensus        64 ~~i~~~~~~~~~PilGiC~G~Q~l~~~~gg   93 (191)
T 2ywd_A           64 DEVRKRVEEGSLALFGTCAGAIWLAKEIVG   93 (191)
T ss_dssp             HHHHHHHHTTCCEEEEETHHHHHHEEEETT
T ss_pred             HHHHHHHHCCCCeEEEECHHHHHHHHHhCC
Confidence            8888888889 9999999999999999998

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=99.61  E-value=3.5e-16  Score=126.52  Aligned_cols=97  Identities=20%  Similarity=0.145  Sum_probs=72.6

Q ss_pred             EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC--CcCEEEEcCCCCCCCCCc-hHHHHHH
Q 033165            6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG--SYDGYVITGSCNDAHGND-VWICKLI   82 (126)
Q Consensus         6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~--~~d~iii~G~~~~~~~~~-~~~~~~~   82 (126)
                      |+||+++.          +|+..+.+.+++.|...+++.....  +  +++.  ++||||+||||.+++++. +|..   
T Consensus         2 i~ilD~g~----------~~~~~i~r~l~~~G~~~~i~p~~~~--~--~~i~~~~~dgiIlsGGp~s~~~~~~~~~~---   64 (503)
T 2ywb_A            2 VLVLDFGS----------QYTRLIARRLRELRAFSLILPGDAP--L--EEVLKHRPQALILSGGPRSVFDPDAPRPD---   64 (503)
T ss_dssp             EEEEESSC----------TTHHHHHHHHHTTTCCEEEEETTCC--H--HHHHTTCCSEEEECCCSSCSSCTTCCCCC---
T ss_pred             EEEEECCC----------cHHHHHHHHHHHCCCEEEEEECCCC--H--HHHHhcCCCEEEECCCCchhccCCCcchH---
Confidence            88998765          4777899999999999888764321  1  1232  469999999999888753 4432   


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT  122 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~  122 (126)
                         +.+.+.++|+||||+|||+|++++||++.+.+ ...|+
T Consensus        65 ---~~~~~~~~PvLGIC~G~Qlla~~~GG~v~~~~~~e~G~  102 (503)
T 2ywb_A           65 ---PRLFSSGLPLLGICYGMQLLAQELGGRVERAGRAEYGK  102 (503)
T ss_dssp             ---GGGGCSSCCEEEETHHHHHHHHTTTCEEECC---CEEE
T ss_pred             ---HHHHhCCCCEEEECHHHHHHHHHhCCeEeeCCCCccce
Confidence               34456799999999999999999999998753 45554

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=99.61  E-value=3.2e-16  Score=112.56  Aligned_cols=89  Identities=17%  Similarity=0.105  Sum_probs=64.4

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--H
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--L   81 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--~   81 (126)
                      +||+|++++..+         + +.+.++|++.|.++.+++.     +  +++.++|+||++|+.. +.+..+|+.+  +
T Consensus         3 ~~I~iid~~~~~---------~-~~~~~~l~~~G~~~~~~~~-----~--~~l~~~d~lil~G~g~-~~~~~~~l~~~~~   64 (200)
T 1ka9_H            3 MKALLIDYGSGN---------L-RSAAKALEAAGFSVAVAQD-----P--KAHEEADLLVLPGQGH-FGQVMRAFQESGF   64 (200)
T ss_dssp             CEEEEECSSCSC---------H-HHHHHHHHHTTCEEEEESS-----T--TSCSSCSEEEECCCSC-HHHHHHTTSSSCT
T ss_pred             cEEEEEeCCCcc---------H-HHHHHHHHHCCCeEEEecC-----h--HHcccCCEEEECCCCc-HHHHHHHHHhcCH
Confidence            589999765332         1 2256788889998887652     1  2467899999988532 2122244432  6


Q ss_pred             HHHHHHHHhcCCcEEEEchHHHHHHHH---hC
Q 033165           82 IALLKQLDSLRKKVLGICFGHQVRAIT---VF  110 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~---~G  110 (126)
                      .++|+++.+.++|+||||+|+|+|+++   +|
T Consensus        65 ~~~i~~~~~~~~PilGIC~G~Qll~~~~~~~G   96 (200)
T 1ka9_H           65 VERVRRHLERGLPFLGICVGMQVLYEGSEEAP   96 (200)
T ss_dssp             HHHHHHHHHTTCCEEECTHHHHTTSSEETTST
T ss_pred             HHHHHHHHHcCCeEEEEcHHHHHHHHhccccC
Confidence            788888888999999999999999999   58

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=99.61  E-value=1.4e-16  Score=115.29  Aligned_cols=92  Identities=15%  Similarity=0.101  Sum_probs=65.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      .+||+|++. .         +.|.+++ +.|++.|.++.+++..       +++.++|+|||+||+...+++.+|...+.
T Consensus        20 ~~~I~ii~~-~---------~~~~~~~-~~l~~~g~~~~~~~~~-------~~l~~~d~iil~GG~~~~~~~~~~~~~~~   81 (208)
T 2iss_D           20 HMKIGVLGV-Q---------GDVREHV-EALHKLGVETLIVKLP-------EQLDMVDGLILPGGESTTMIRILKEMDMD   81 (208)
T ss_dssp             CCEEEEECS-S---------SCHHHHH-HHHHHTTCEEEEECSG-------GGGGGCSEEEECSSCHHHHHHHHHHTTCH
T ss_pred             CcEEEEEEC-C---------CchHHHH-HHHHHCCCEEEEeCCh-------HHHhhCCEEEECCCcHHHHHhhhhhhhHH
Confidence            469999964 1         2344433 5667788887776521       23568999999999543333223444567


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCc
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSS  112 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~  112 (126)
                      ++|+++.++++|+||||+|+|+|++++|++
T Consensus        82 ~~i~~~~~~g~PilGIC~G~QlL~~~~gg~  111 (208)
T 2iss_D           82 EKLVERINNGLPVFATCAGVILLAKRIKNY  111 (208)
T ss_dssp             HHHHHHHHTTCCEEEETHHHHHHEEEEC--
T ss_pred             HHHHHHHHCCCeEEEECHHHHHHHHHcCCC
Confidence            889998889999999999999999999993

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=99.60  E-value=6.1e-16  Score=110.93  Aligned_cols=88  Identities=15%  Similarity=0.207  Sum_probs=64.4

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC-----CeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG-----ETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI   78 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~   78 (126)
                      |||+||+++..+.          +.+.++|++.|     .++.+++.     +.  + .++|+|||||+. +..+..+|+
T Consensus         1 m~I~iid~~~g~~----------~s~~~~l~~~G~~~~~~~~~~~~~-----~~--~-~~~dglilpG~g-~~~~~~~~l   61 (201)
T 1gpw_B            1 MRIGIISVGPGNI----------MNLYRGVKRASENFEDVSIELVES-----PR--N-DLYDLLFIPGVG-HFGEGMRRL   61 (201)
T ss_dssp             CEEEEECCSSSCC----------HHHHHHHHHHSTTBSSCEEEEECS-----CC--S-SCCSEEEECCCS-CSHHHHHHH
T ss_pred             CEEEEEecCCchH----------HHHHHHHHHcCCCCCceEEEEECC-----Cc--c-cCCCEEEECCCC-cHHHHHHHH
Confidence            5899998764421          23456777778     78877652     22  3 689999999863 221223566


Q ss_pred             HH--HHHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165           79 CK--LIALLKQLDSLRKKVLGICFGHQVRAITVF  110 (126)
Q Consensus        79 ~~--~~~~i~~~~~~~~PvlGIC~G~Q~la~~~G  110 (126)
                      .+  +.++|+++.+.++|+||||+|||+|++++|
T Consensus        62 ~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~g   95 (201)
T 1gpw_B           62 RENDLIDFVRKHVEDERYVVGVCLGMQLLFEESE   95 (201)
T ss_dssp             HHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEET
T ss_pred             HhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhhc
Confidence            53  678899988899999999999999999996

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=99.58  E-value=9.2e-16  Score=117.65  Aligned_cols=113  Identities=19%  Similarity=0.196  Sum_probs=70.3

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhC-CHH-HHHHHHHhhCCCeEEEEEccCCCCCCC-CCCCCcCEEEEcCCCCCCCCCc--
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYG-GYF-GVFVRMLAEEGETWDVFHVARGEFPDD-DDFGSYDGYVITGSCNDAHGND--   75 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~-~~~-~~~~~~l~~~g~~~~~~~~~~~~~p~~-~~~~~~d~iii~G~~~~~~~~~--   75 (126)
                      |.++.|+|+.+....... ..++ +|. ..+.++|++.|..+.+++...+ .... +.++++|||||+||+.++.+..  
T Consensus        28 ~~~P~IGI~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~-~~~i~~~l~~~dglil~GG~~~v~p~~~~  105 (315)
T 1l9x_A           28 AKKPIIGILMQKCRNKVM-KNYGRYYIAASYVKYLESAGARVVPVRLDLT-EKDYEILFKSINGILFPGGSVDLRRSDYA  105 (315)
T ss_dssp             CCCCEEEEECEECCSHHH-HTTCSEEEEHHHHHHHHHTTCEEEEECSSCC-HHHHHHHHHHSSEEEECCCCCCTTTCHHH
T ss_pred             CCCCEEEEECCccccccc-ccCcceehHHHHHHHHHHCCCEEEEEecCCC-HHHHHHHHhcCCEEEEeCCCcccChhhhh
Confidence            345789999765443211 1111 111 1356788888999888775321 0000 0135799999999987764431  


Q ss_pred             hHHHHHHHHHHHHHhc--CCcEEEEchHHHHHHHHhCCcccc
Q 033165           76 VWICKLIALLKQLDSL--RKKVLGICFGHQVRAITVFSSHIN  115 (126)
Q Consensus        76 ~~~~~~~~~i~~~~~~--~~PvlGIC~G~Q~la~~~Gg~v~~  115 (126)
                      .+...+.+.+++..+.  ++|+||||+|||+|+.++||++..
T Consensus       106 ~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~  147 (315)
T 1l9x_A          106 KVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLL  147 (315)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCcccc
Confidence            2223344455554444  599999999999999999998654

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=99.57  E-value=5.1e-16  Score=129.75  Aligned_cols=100  Identities=21%  Similarity=0.309  Sum_probs=66.9

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCC-chHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGN-DVWIC   79 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~-~~~~~   79 (126)
                      ..||+||+.+..          |+..+.+.+++.|...+++....   + .+++  .++|||||+|||.+++++ .+|+.
T Consensus        29 ~~~I~VLDfg~q----------~~~liar~lre~Gv~~~ivp~~~---~-~e~i~~~~~dGIILsGGp~s~~~~~~~~~~   94 (697)
T 2vxo_A           29 EGAVVILDAGAQ----------YGKVIDRRVRELFVQSEIFPLET---P-AFAIKEQGFRAIIISGGPNSVYAEDAPWFD   94 (697)
T ss_dssp             CCCEEEEEEC------------CHHHHHHHHHHTTCCEEEEETTC---C-HHHHHHHTCSEEEEEECC-------CCCCC
T ss_pred             CCEEEEEECCCc----------hHHHHHHHHHHCCCEEEEEECCC---C-HHHHhhcCCCEEEECCCCCcccCccchhHH
Confidence            468999988764          66678899999999998887532   1 1122  479999999999988753 34432


Q ss_pred             HHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165           80 KLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT  122 (126)
Q Consensus        80 ~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~  122 (126)
                            +.+.+.++|+||||+|||+|++++||++.+.+ ...|+
T Consensus        95 ------~~i~~~g~PvLGIC~G~QlLa~~lGG~v~~~~~~e~G~  132 (697)
T 2vxo_A           95 ------PAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVREDGV  132 (697)
T ss_dssp             ------GGGTTSSCCEEEEEHHHHHHHHHTTCCBCC-------C
T ss_pred             ------HHHHhCCCCEEEECHHHHHHHHHhCCeEeecCCCccce
Confidence                  23456789999999999999999999998743 34443

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=99.54  E-value=1.5e-14  Score=117.09  Aligned_cols=103  Identities=16%  Similarity=0.189  Sum_probs=78.3

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-----CCCCCCcCEEEEcCCCCCCCCCchHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-----DDDFGSYDGYVITGSCNDAHGNDVWI   78 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-----~~~~~~~d~iii~G~~~~~~~~~~~~   78 (126)
                      .+|+++-=-.   ...++|.|+...+.++..+.+.++++..+...++..     .+.+.++|+||+|||+...     ..
T Consensus       294 v~IalVGKY~---~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G~~-----~~  365 (535)
T 3nva_A          294 INIALVGKYT---KLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGSR-----GA  365 (535)
T ss_dssp             EEEEEEESCT---TSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCSST-----TH
T ss_pred             eEEEEEecCc---CCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCCCc-----cH
Confidence            4677774333   345778888888888777788888888766432211     2467899999999997542     23


Q ss_pred             HHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165           79 CKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI  114 (126)
Q Consensus        79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~  114 (126)
                      ....++++.+.+.++|+||||+|||+|+.++|+++.
T Consensus       366 ~g~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~  401 (535)
T 3nva_A          366 EGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVL  401 (535)
T ss_dssp             HHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCcEEEECcchhHHHHHhhcccc
Confidence            567788899888999999999999999999999984

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=99.52  E-value=6.5e-15  Score=111.71  Aligned_cols=54  Identities=15%  Similarity=0.207  Sum_probs=46.3

Q ss_pred             CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165           56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI  114 (126)
Q Consensus        56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~  114 (126)
                      +.++|+||||||+.+     ++...+.++++++.+.++|+||||+|||+|+.++||++.
T Consensus        88 l~~~dgiil~GG~~~-----~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~  141 (289)
T 2v4u_A           88 LCKADGILVPGGFGI-----RGTLGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCL  141 (289)
T ss_dssp             HHHCSEEEECSCCSS-----TTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHS
T ss_pred             HhhCCEEEecCCCCc-----hhHHHHHHHHHHHHHcCCcEEEECccHHHHHHHHhcccc
Confidence            568999999999754     223567788999888899999999999999999999984

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=99.52  E-value=1e-14  Score=118.93  Aligned_cols=94  Identities=15%  Similarity=0.183  Sum_probs=70.2

Q ss_pred             HHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC-CC-C-CCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCC
Q 033165           17 YVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF-PD-D-DDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRK   93 (126)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-p~-~-~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~   93 (126)
                      .+.++|.+|...+.+++.+.|.++.+......++ |. . +.+.++||||||||+.++.     .....++++.+.+.++
T Consensus       311 ~l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfGd~~-----~~g~i~~ir~a~e~~i  385 (550)
T 1vco_A          311 KMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVRG-----IEGKVRAAQYARERKI  385 (550)
T ss_dssp             ---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSSTT-----HHHHHHHHHHHHHTTC
T ss_pred             EEEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCCCcc-----hhhhHHHHHHHHHCCC
Confidence            3567788888888888888898998886543222 11 0 1357899999999976542     2345678888888899


Q ss_pred             cEEEEchHHHHHHHHhCCcccc
Q 033165           94 KVLGICFGHQVRAITVFSSHIN  115 (126)
Q Consensus        94 PvlGIC~G~Q~la~~~Gg~v~~  115 (126)
                      |+||||+|||+|+.++|+++..
T Consensus       386 PiLGICLGmQlL~~a~Gg~v~~  407 (550)
T 1vco_A          386 PYLGICLGLQIAVIEFARNVAG  407 (550)
T ss_dssp             CEEEETHHHHHHHHHHHHHTSC
T ss_pred             cEEEECcCHHHHHHHhCccccc
Confidence            9999999999999999998764

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=99.47  E-value=2.6e-14  Score=116.51  Aligned_cols=93  Identities=14%  Similarity=0.164  Sum_probs=67.6

Q ss_pred             HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC--CCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcE
Q 033165           18 VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP--DDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKV   95 (126)
Q Consensus        18 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p--~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~Pv   95 (126)
                      +.|+|.+|...+.+.....+.++.++.....++.  ..+.+.++||||++||+.++.     .....++++.+.+.++|+
T Consensus       301 l~D~y~Si~~aL~~~G~~~~~~V~i~~~d~e~i~~~~~~~l~~~DGIilsGGpg~~~-----~~g~~~~i~~a~~~~~Pi  375 (545)
T 1s1m_A          301 LPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRG-----VEGMITTARFARENNIPY  375 (545)
T ss_dssp             SGGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTT-----HHHHHHHHHHHHHTTCCE
T ss_pred             EEEHHHHHHHHHHHhCcccCCeEEEccCCHHHhhhhhhhhhhcCCEEEECCCCCCcc-----chhhHHHHHHHHHCCCcE
Confidence            4567777777777665555566666665422110  112467899999999986542     245667888888889999


Q ss_pred             EEEchHHHHHHHHhCCcccc
Q 033165           96 LGICFGHQVRAITVFSSHIN  115 (126)
Q Consensus        96 lGIC~G~Q~la~~~Gg~v~~  115 (126)
                      ||||+|||+|+.++|+++.+
T Consensus       376 LGIClG~Qll~va~Gg~v~~  395 (545)
T 1s1m_A          376 LGICLGMQVALIDYARHVAN  395 (545)
T ss_dssp             EEETHHHHHHHHHHHHHHHC
T ss_pred             EEECChHHHHHHHhCCceec
Confidence            99999999999999999874

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=99.46  E-value=6.3e-15  Score=120.47  Aligned_cols=93  Identities=10%  Similarity=0.049  Sum_probs=66.4

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHH-
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWIC-   79 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~-   79 (126)
                      |+|+||+|++++...          ...+.++|++.|.++.+++..+.     ..+.++|+|||||+.. +.....+.. 
T Consensus         2 ~~m~~I~Iid~~~g~----------~~~~~~~l~~~G~~~~vv~~~~~-----~~l~~~DglILpGgG~-~~~~~~~l~~   65 (555)
T 1jvn_A            2 SHMPVVHVIDVESGN----------LQSLTNAIEHLGYEVQLVKSPKD-----FNISGTSRLILPGVGN-YGHFVDNLFN   65 (555)
T ss_dssp             CSSCEEEEECCSCSC----------CHHHHHHHHHTTCEEEEESSGGG-----CCSTTCSCEEEEECSC-HHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCC----------HHHHHHHHHHCCCEEEEECCccc-----cccccCCEEEECCCCc-hHhHhhhhhh
Confidence            678899999875321          12466788889998887663211     1367899999998532 111122332 


Q ss_pred             -HHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           80 -KLIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        80 -~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                       .+.++|+++++.++|+||||+|||+|++++
T Consensus        66 ~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a~   96 (555)
T 1jvn_A           66 RGFEKPIREYIESGKPIMGIXVGLQALFAGS   96 (555)
T ss_dssp             TTCHHHHHHHHHTTCCEEEEEHHHHTTEEEE
T ss_pred             ccHHHHHHHHHHcCCcEEEEchhhhhhhhhh
Confidence             256788888889999999999999999998

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=99.07  E-value=4.3e-10  Score=80.10  Aligned_cols=97  Identities=19%  Similarity=0.239  Sum_probs=67.4

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC----------C-CC--CC--CCCCcCEEEEcCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE----------F-PD--DD--DFGSYDGYVITGS   67 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----------~-p~--~~--~~~~~d~iii~G~   67 (126)
                      ++||+||..+.-...      ++. ...+.|++.|.+++++.+..+.          + ++  .+  +..+||+||||||
T Consensus        23 ~~kV~ill~~g~~~~------e~~-~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG   95 (193)
T 1oi4_A           23 SKKIAVLITDEFEDS------EFT-SPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG   95 (193)
T ss_dssp             CCEEEEECCTTBCTH------HHH-HHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB
T ss_pred             CCEEEEEECCCCCHH------HHH-HHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCC
Confidence            468999988655431      111 2456788889999988765432          0 00  01  2357999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           68 CNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        68 ~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .. + ++......+.++|+++.++++|+.|||.|.|+|+++
T Consensus        96 ~~-~-~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a  134 (193)
T 1oi4_A           96 HS-P-DYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA  134 (193)
T ss_dssp             TH-H-HHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred             cC-H-HHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence            42 2 111223568889999999999999999999999996

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.03  E-value=5.4e-11  Score=86.23  Aligned_cols=100  Identities=15%  Similarity=0.063  Sum_probs=68.9

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCchHHH--
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGNDVWIC--   79 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~~~~~--   79 (126)
                      .+||+++.+....+    .++.|...+.++|++.|.+++++++...+.+. .+.+.+.|+|+++||..  ..-..++.  
T Consensus        27 ~~~i~~Ip~As~~~----~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~--~~l~~~L~~~  100 (206)
T 3l4e_A           27 GKTVTFIPTASTVE----EVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNT--FFLLQELKRT  100 (206)
T ss_dssp             TCEEEEECGGGGGC----SCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCH--HHHHHHHHHH
T ss_pred             CCEEEEECCCCCCC----CHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCH--HHHHHHHHHC
Confidence            36899997655421    23457777889999999988877654311000 02467899999999732  22122222  


Q ss_pred             HHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           80 KLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        80 ~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .+.+.|++.+++++|++|+|.|+|+++..
T Consensus       101 gl~~~l~~~~~~G~p~~G~sAGa~~l~~~  129 (206)
T 3l4e_A          101 GADKLILEEIAAGKLYIGESAGAVITSPN  129 (206)
T ss_dssp             THHHHHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred             ChHHHHHHHHHcCCeEEEECHHHHHhccc
Confidence            36788999888999999999999999864

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=99.00  E-value=6.3e-10  Score=79.24  Aligned_cols=100  Identities=24%  Similarity=0.296  Sum_probs=69.6

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC---------C-CC--CCCC---CCcCEEEEc
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE---------F-PD--DDDF---GSYDGYVIT   65 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~---------~-p~--~~~~---~~~d~iii~   65 (126)
                      |.++||+|+..+.-...      ++. ...+.|+..|.+++++.+..+.         + ++  .++.   .+||+|+||
T Consensus         1 mm~~~v~ill~~g~~~~------e~~-~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livp   73 (197)
T 2rk3_A            1 MASKRALVILAKGAEEM------ETV-IPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLP   73 (197)
T ss_dssp             -CCCEEEEEECTTCCHH------HHH-HHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEEC
T ss_pred             CCCCEEEEEECCCCcHH------HHH-HHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEEC
Confidence            66789999998766532      111 2446788889999988764321         0 10  0123   689999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           66 GSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        66 G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      ||.... .+....+.+.++|+++.++++|+.+||.|.++|+.+
T Consensus        74 GG~~~~-~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  115 (197)
T 2rk3_A           74 GGNLGA-QNLSESAAVKEILKEQENRKGLIATICAGPTALLAH  115 (197)
T ss_dssp             CCHHHH-HHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             CCchhH-HHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence            995322 112334568899999999999999999999999986

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=98.96  E-value=6.3e-10  Score=78.60  Aligned_cols=100  Identities=20%  Similarity=0.298  Sum_probs=67.0

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC--------------CC--CCCC--CCcCEE
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF--------------PD--DDDF--GSYDGY   62 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--------------p~--~~~~--~~~d~i   62 (126)
                      |.++||+||..+.-...      ++.. ..+.|+..+++++++.+..+..              ++  .+++  .+||+|
T Consensus         7 ~~~~~v~il~~~g~~~~------e~~~-~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~l   79 (190)
T 2vrn_A            7 LTGKKIAILAADGVEEI------ELTS-PRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGL   79 (190)
T ss_dssp             CTTCEEEEECCTTCBHH------HHHH-HHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEE
T ss_pred             CCCCEEEEEeCCCCCHH------HHHH-HHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEE
Confidence            45689999987655432      1112 3467788888888876542210              10  1122  579999


Q ss_pred             EEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           63 VITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        63 ii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      |||||..... +......+.++|+++.++++|+.+||.|.++|+++
T Consensus        80 ivpGG~~~~~-~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a  124 (190)
T 2vrn_A           80 LLPGGTVNPD-KLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET  124 (190)
T ss_dssp             EECCCTHHHH-HHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred             EECCCchhHH-HHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence            9999963221 11223568899999999999999999999999985

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=98.96  E-value=1.6e-09  Score=95.52  Aligned_cols=95  Identities=17%  Similarity=0.166  Sum_probs=65.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc----hHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND----VWI   78 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~----~~~   78 (126)
                      ++||+|+.....+...         -+.++|++.|.+..+++..+. ....++++++|+||+|||.+.. |..    .|.
T Consensus      1047 ~pkVaIi~~~G~N~~~---------~~~~A~~~aG~~~~~v~~~dl-~~~~~~l~~~d~lvlPGGfSyg-D~l~~g~~~a 1115 (1303)
T 3ugj_A         1047 RPKVAVLREQGVNSHV---------EMAAAFHRAGFDAIDVHMSDL-LGGRIGLGNFHALVACGGFSYG-DVLGAGEGWA 1115 (1303)
T ss_dssp             CCEEEEEECTTCCCHH---------HHHHHHHHTTCEEEEEEHHHH-HTTSCCGGGCSEEEECCSCGGG-GTTSTTHHHH
T ss_pred             CCEEEEEecCCcCCHH---------HHHHHHHHhCCceEEEeeccc-ccCcccHhhCCEEEECCCCcch-hhhccchhHH
Confidence            5699999987765421         146788899999887764210 0112367899999999996321 111    232


Q ss_pred             ------HHHHHHHHHHH-hcCCcEEEEchHHHHHHHH
Q 033165           79 ------CKLIALLKQLD-SLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        79 ------~~~~~~i~~~~-~~~~PvlGIC~G~Q~la~~  108 (126)
                            ..+.+.+++++ +.++|+||||.|+|+|+++
T Consensus      1116 ~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A         1116 KSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp             HHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred             HHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHh
Confidence                  23455677654 5789999999999999986

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=98.96  E-value=2.8e-09  Score=77.90  Aligned_cols=104  Identities=14%  Similarity=0.091  Sum_probs=69.0

Q ss_pred             CCCCeEEEEEc-----CCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC------------------------
Q 033165            1 MGGKKFAVLLC-----AEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP------------------------   51 (126)
Q Consensus         1 M~~~ki~Il~~-----~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p------------------------   51 (126)
                      |.|+||+|+..     +.-.. .     ++.. ..+.|++.|++++++.+..+..+                        
T Consensus         4 ~~m~kv~ill~~~~~~~g~~~-~-----E~~~-p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~   76 (232)
T 1vhq_A            4 ITMKKIGVILSGCGVYDGSEI-H-----EAVL-TLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARIT   76 (232)
T ss_dssp             --CCEEEEECCSBSTTTSBCH-H-----HHHH-HHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTT
T ss_pred             ccCCeEEEEEccCCCCCCeeH-H-----HHHH-HHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhh
Confidence            34789999988     33321 1     1222 33677888999999886532110                        


Q ss_pred             -----CCCC--CCCcCEEEEcCCCCCC--CCCchH-------HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhC-C
Q 033165           52 -----DDDD--FGSYDGYVITGSCNDA--HGNDVW-------ICKLIALLKQLDSLRKKVLGICFGHQVRAITVF-S  111 (126)
Q Consensus        52 -----~~~~--~~~~d~iii~G~~~~~--~~~~~~-------~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~G-g  111 (126)
                           ..++  .++||+|+||||....  ..+.++       ...+.++|+++.++++|+.+||.|.++|+.++. |
T Consensus        77 ~~~~~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~~G  153 (232)
T 1vhq_A           77 RGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFP  153 (232)
T ss_dssp             TTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSC
T ss_pred             hcCCCCHHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhcCC
Confidence                 0012  3579999999995431  111111       356888999999999999999999999999976 5

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=98.96  E-value=8.7e-11  Score=86.21  Aligned_cols=98  Identities=13%  Similarity=0.074  Sum_probs=66.7

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--   80 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--   80 (126)
                      .+||+|+.+......    ++.|...+.+.|++.|.++..++..++  + .+.+.++|+|+++||..  ..-..++.+  
T Consensus        31 ~~~i~iI~~a~~~~~----~~~~~~~~~~al~~lG~~~~~v~~~~d--~-~~~l~~ad~I~lpGG~~--~~~~~~l~~~g  101 (229)
T 1fy2_A           31 RRSAVFIPFAGVTQT----WDEYTDKTAEVLAPLGVNVTGIHRVAD--P-LAAIEKAEIIIVGGGNT--FQLLKESRERG  101 (229)
T ss_dssp             CCEEEEECTTCCSSC----HHHHHHHHHHHHGGGTCEEEETTSSSC--H-HHHHHHCSEEEECCSCH--HHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCC----HHHHHHHHHHHHHHCCCEEEEEecccc--H-HHHHhcCCEEEECCCcH--HHHHHHHHHCC
Confidence            369999988752211    224666778899999987665543211  1 13567899999999732  111122222  


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      +.+.|++.+++++|++|+|.|+|+|+...
T Consensus       102 l~~~l~~~~~~G~p~~G~sAG~~~l~~~~  130 (229)
T 1fy2_A          102 LLAPMADRVKRGALYIGWSAGANLACPTI  130 (229)
T ss_dssp             CHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred             hHHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence            66788888888999999999999998854

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=98.92  E-value=7.3e-09  Score=74.78  Aligned_cols=98  Identities=17%  Similarity=0.114  Sum_probs=67.1

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHh--------hCCCeEEEEEccCCCC---------CC--CCCC--CCc
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLA--------EEGETWDVFHVARGEF---------PD--DDDF--GSY   59 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~--------~~g~~~~~~~~~~~~~---------p~--~~~~--~~~   59 (126)
                      |.|+||+|+-.+.-...      ++.. ..+.|+        +.+.+++++.+..+..         ++  .+++  .+|
T Consensus         3 m~m~~v~ill~~g~~~~------e~~~-~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~   75 (212)
T 3efe_A            3 MQTKKAFLYVFNTMSDW------EYGY-LIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESK   75 (212)
T ss_dssp             --CCCEEEEECTTCCTT------TTHH-HHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTT
T ss_pred             CcccEEEEEECCCccHH------HHHH-HHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCC
Confidence            78899999998876542      2222 335565        5678888887643211         10  1122  389


Q ss_pred             CEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           60 DGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        60 d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      |.|+||||....   ......+.++|+++.++++++.+||-|..+|+++
T Consensus        76 D~livpGG~~~~---~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a  121 (212)
T 3efe_A           76 DLLILPGGTTWS---EEIHQPILERIGQALKIGTIVAAICGATDALANM  121 (212)
T ss_dssp             CEEEECCCSCTT---SGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred             CEEEECCCCccc---cccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence            999999996422   2223568889999999999999999999999985

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=98.89  E-value=1.4e-08  Score=73.25  Aligned_cols=97  Identities=14%  Similarity=0.038  Sum_probs=65.6

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-CCeEEEEEccCC-----C--C-CC--CCCC-CCcCEEEEcCCC
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-GETWDVFHVARG-----E--F-PD--DDDF-GSYDGYVITGSC   68 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~-----~--~-p~--~~~~-~~~d~iii~G~~   68 (126)
                      |.|+||+|+-.+.-...      ++.. ..+.|++. +.+++++.+..+     .  + ++  .+++ .+||.|+||||.
T Consensus         1 M~m~kV~ill~~g~~~~------E~~~-~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG~   73 (206)
T 3f5d_A            1 MSLKKALFLILDQYADW------EGVY-LASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGD   73 (206)
T ss_dssp             --CEEEEEECCSSBCTT------TSHH-HHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBS
T ss_pred             CCccEEEEEEcCCCcHH------HHHH-HHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCCC
Confidence            88999999988765431      1222 34566665 888887765421     0  0 00  1122 479999999997


Q ss_pred             CCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           69 NDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        69 ~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      ....    ..+.+.++|+++.++++++.+||-|.++|+.+
T Consensus        74 ~~~~----~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a  109 (206)
T 3f5d_A           74 SWSN----DNKKLLHFVKTAFQKNIPIAAICGAVDFLAKN  109 (206)
T ss_dssp             CCCC----CCHHHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred             Chhh----cCHHHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence            4322    23568889999999999999999999999985

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=98.87  E-value=3.5e-09  Score=73.38  Aligned_cols=97  Identities=19%  Similarity=0.214  Sum_probs=66.9

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-----------CCCC--CCcCEEEEcCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-----------DDDF--GSYDGYVITGSCN   69 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-----------~~~~--~~~d~iii~G~~~   69 (126)
                      .+||+|+-.+.-...      ++. ...+.|+..|.+++++.+..+....           .+++  .+||+|+||||..
T Consensus         2 ~~ki~il~~~g~~~~------e~~-~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~   74 (168)
T 3l18_A            2 SMKVLFLSADGFEDL------ELI-YPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA   74 (168)
T ss_dssp             CCEEEEECCTTBCHH------HHH-HHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH
T ss_pred             CcEEEEEeCCCccHH------HHH-HHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcC
Confidence            479999988765432      112 2446778889999888764211100           1122  3699999999963


Q ss_pred             CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                       + +.......+.++++++.++++|+.+||.|.++|+++
T Consensus        75 -~-~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a  111 (168)
T 3l18_A           75 -P-EIVRLNEKAVMITRRMFEDDKPVASICHGPQILISA  111 (168)
T ss_dssp             -H-HHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred             -H-HHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence             2 111223567889999999999999999999999986

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=98.84  E-value=5.3e-09  Score=75.04  Aligned_cols=98  Identities=21%  Similarity=0.155  Sum_probs=68.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC---C---------CC--CC--CCCCcCEEEEcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE---F---------PD--DD--DFGSYDGYVITG   66 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~---~---------p~--~~--~~~~~d~iii~G   66 (126)
                      ++||+|+..+.-...      ++.. ..+.|+..|++++++.+..+.   .         ++  .+  +..+||+|||||
T Consensus         2 ~~kV~ill~~g~~~~------e~~~-~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpG   74 (205)
T 2ab0_A            2 SASALVCLAPGSEET------EAVT-TIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPG   74 (205)
T ss_dssp             CCEEEEEECTTCCHH------HHHH-HHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECC
T ss_pred             CcEEEEEEcCCCcHH------HHHH-HHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECC
Confidence            469999998766432      1122 346788889999988765321   0         10  01  235799999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH-HHHHHH
Q 033165           67 SCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH-QVRAIT  108 (126)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~-Q~la~~  108 (126)
                      |...+ .+......+.++|+++.++++|+.+||.|. ++|+.+
T Consensus        75 G~~~~-~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a  116 (205)
T 2ab0_A           75 GIKGA-ECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH  116 (205)
T ss_dssp             CHHHH-HHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred             CcccH-HHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence            95322 112334568899999999999999999999 999975

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=98.77  E-value=1.6e-08  Score=74.80  Aligned_cols=105  Identities=12%  Similarity=0.088  Sum_probs=67.7

Q ss_pred             CCCCeEEEEEcCCCchHH--HHhhC----CHHHHHHHHHhhCCCeEEEEEccCCCCCC----------------------
Q 033165            1 MGGKKFAVLLCAEDSEYV--KKKYG----GYFGVFVRMLAEEGETWDVFHVARGEFPD----------------------   52 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~--~~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----------------------   52 (126)
                      |.|+||+|+.++......  -..-|    ++.. ..+.|++.|++++++.+.... +.                      
T Consensus         1 m~m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~-p~~~l~~aG~~V~iaS~~g~~-~~d~~s~~~~~~~~~~~~~~~~~~   78 (244)
T 3kkl_A            1 MTPKRALISLTSYHGPFYKDGAKTGVFVVEILR-SFDTFEKHGFEVDFVSETGGF-GWDEHYLPKSFIGGEDKMNFETKN   78 (244)
T ss_dssp             --CCEEEEECCCCCCCCSTTSCCCCBCHHHHHH-HHHHHHTTTCEEEEEESSSCC-CBCTTC------------------
T ss_pred             CCCCEEEEEECCCCcccCCCCCcCcccHHHHHH-HHHHHHHCCCEEEEEeCCCCC-CcCCccccccccCHHHHHHHHHhh
Confidence            899999999997421000  00001    1222 236778899999998865221 10                      


Q ss_pred             ------------CC--CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           53 ------------DD--DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        53 ------------~~--~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                                  .+  +.++||+|+||||.... .+......+.++++++.++++|+.+||.|..+|+.+
T Consensus        79 ~~~~~~l~~~~~l~~v~~~~yD~l~vpGG~~~~-~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a  147 (244)
T 3kkl_A           79 SAFNKALARIKTANEVNASDYKVFFASAGHGAL-FDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL  147 (244)
T ss_dssp             --CHHHHHTCEEGGGCCGGGCSEEEECCSTTHH-HHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             HHHHHHhcCCCChHHCCHhhCCEEEEcCCCchh-hhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence                        00  23579999999996432 112223567889999999999999999999999987

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=98.75  E-value=7.6e-09  Score=76.14  Aligned_cols=106  Identities=13%  Similarity=0.121  Sum_probs=67.4

Q ss_pred             CCCCeEEEEEcCCCchHHH--HhhC----CHHHHHHHHHhhCCCeEEEEEccCCC-C-----------------------
Q 033165            1 MGGKKFAVLLCAEDSEYVK--KKYG----GYFGVFVRMLAEEGETWDVFHVARGE-F-----------------------   50 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~--~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~-~-----------------------   50 (126)
                      |.|+||+|+-.+.......  ..-|    ++.. ..+.|++.|++++++.+..+. .                       
T Consensus         1 m~m~kvLivls~~~~~~~~~~~~~G~~~~E~~~-p~~vl~~ag~~v~~~s~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~   79 (243)
T 1rw7_A            1 MAPKKVLLALTSYNDVFYSDGAKTGVFVVEALH-PFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDS   79 (243)
T ss_dssp             -CCCEEEEECCCCCCBCSTTSCBCCBCHHHHHH-HHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTS
T ss_pred             CCCceEEEEECCCCcccCCCCCCCccCHHHHHH-HHHHHHHCCCEEEEECCCCCCCcCcccccccccChHHHHHHHhhhH
Confidence            7889999999753200000  0000    1222 236678889999988764321 0                       


Q ss_pred             -------C--CCCC--CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           51 -------P--DDDD--FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        51 -------p--~~~~--~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                             +  ..++  .++||+|+|+||.....+ ....+.+.++|+++.++++||.+||.|..+|+.+
T Consensus        80 ~~g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~-l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a  147 (243)
T 1rw7_A           80 DFNKTLAKIKTPKEVNADDYQIFFASAGHGTLFD-YPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL  147 (243)
T ss_dssp             HHHHHHHTCBCGGGCCGGGEEEEEECCSTTHHHH-GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             HHHhhhccCCChHHCCHhhCcEEEECCCCCchhh-cccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence                   0  0111  347999999999643211 2223568889999999999999999999999986

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=98.75  E-value=3.3e-08  Score=69.86  Aligned_cols=97  Identities=18%  Similarity=0.136  Sum_probs=66.3

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC-CCCCC-----------CCC--CCCcCEEEEcCCCC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR-GEFPD-----------DDD--FGSYDGYVITGSCN   69 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~p~-----------~~~--~~~~d~iii~G~~~   69 (126)
                      +||+|+..+.-...      ++. ...+.|++.|.+++++.+.. .....           .++  ..+||+|+||||..
T Consensus         6 kkv~ill~~g~~~~------e~~-~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~   78 (190)
T 4e08_A            6 KSALVILAPGAEEM------EFI-IAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLG   78 (190)
T ss_dssp             CEEEEEECTTCCHH------HHH-HHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHH
T ss_pred             cEEEEEECCCchHH------HHH-HHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCCh
Confidence            58999988665432      111 23477888999999988754 21100           111  24799999999932


Q ss_pred             CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .. .+......+.++|+++.++++|+.+||.|.++|+++
T Consensus        79 ~~-~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a  116 (190)
T 4e08_A           79 GS-NAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH  116 (190)
T ss_dssp             HH-HHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             HH-HHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            11 111223567889999999999999999999999985

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=98.75  E-value=9.8e-09  Score=72.61  Aligned_cols=76  Identities=21%  Similarity=0.110  Sum_probs=54.9

Q ss_pred             HHHhhCCCeEEEEEccCCCC---------CC----CCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEE
Q 033165           31 RMLAEEGETWDVFHVARGEF---------PD----DDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLG   97 (126)
Q Consensus        31 ~~l~~~g~~~~~~~~~~~~~---------p~----~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlG   97 (126)
                      +.|++.|++++++.+..+..         ++    ..+..+||+|+||||+...  +....+.+.++++++.++++|+.+
T Consensus        29 ~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~--~l~~~~~~~~~l~~~~~~~k~iaa  106 (177)
T 4hcj_A           29 KIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCI--TLWDDWRTQGLAKLFLDNQKIVAG  106 (177)
T ss_dssp             HHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGG--GGTTCHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHH--HHhhCHHHHHHHHHHHHhCCEEEE
Confidence            67888999998887542110         10    1134689999999996421  111125678899999999999999


Q ss_pred             EchHHHHHHHH
Q 033165           98 ICFGHQVRAIT  108 (126)
Q Consensus        98 IC~G~Q~la~~  108 (126)
                      ||.|.++|+.+
T Consensus       107 IC~g~~~La~a  117 (177)
T 4hcj_A          107 IGSGVVIMANA  117 (177)
T ss_dssp             ETTHHHHHHHT
T ss_pred             ecccHHHHHHC
Confidence            99999999985

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=98.69  E-value=7.8e-08  Score=68.91  Aligned_cols=97  Identities=11%  Similarity=0.067  Sum_probs=62.5

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC------CCeEEEEEccCCCC---------C-CCCC--CCCcCEE
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE------GETWDVFHVARGEF---------P-DDDD--FGSYDGY   62 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~------g~~~~~~~~~~~~~---------p-~~~~--~~~~d~i   62 (126)
                      |.++||+|+-.+.-...-      +.. ..+.|+..      +++++++.+..+..         + ..++  ..+||.|
T Consensus         3 ~~~~~v~ill~~g~~~~e------~~~-~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~l   75 (202)
T 3gra_A            3 LAPYRVDFILLEHFSMAS------FTV-AMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLL   75 (202)
T ss_dssp             --CEEEEEEECTTBCHHH------HHH-HHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEE
T ss_pred             CCcEEEEEEEeCCCCHHH------HHH-HHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEE
Confidence            446799999987765421      111 22344332      26666665532110         0 0112  4679999


Q ss_pred             EEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           63 VITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        63 ii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      |||||......  .  +.+.++|+++.++++++.+||-|..+|+++
T Consensus        76 ivpGG~~~~~~--~--~~l~~~l~~~~~~g~~iaaIC~G~~~La~a  117 (202)
T 3gra_A           76 VVCGGLRTPLK--Y--PELDRLLNDCAAHGMALGGLWNGAWFLGRA  117 (202)
T ss_dssp             EEECCTTCCSC--C--TTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred             EEeCCCchhhc--c--HHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence            99999654322  2  568889999999999999999999999986

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=98.67  E-value=9.6e-08  Score=70.62  Aligned_cols=100  Identities=16%  Similarity=0.200  Sum_probs=65.6

Q ss_pred             CCeEEEEEc-----CCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC--------------------------
Q 033165            3 GKKFAVLLC-----AEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP--------------------------   51 (126)
Q Consensus         3 ~~ki~Il~~-----~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p--------------------------   51 (126)
                      ++||+|+-.     +.-.. .     ++.. ..+.|++.|++++++.+..+..+                          
T Consensus        23 ~kkV~ill~~~~~~dG~e~-~-----E~~~-p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~   95 (242)
T 3l3b_A           23 ALNSAVILAGCGHMDGSEI-R-----EAVL-VMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARG   95 (242)
T ss_dssp             -CEEEEECCCSSTTTSCCH-H-----HHHH-HHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTT
T ss_pred             cCEEEEEEecCCCCCCeeH-H-----HHHH-HHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccc
Confidence            379999987     33221 1     1222 23677889999998876432100                          


Q ss_pred             ---CCCC--CCCcCEEEEcCCCCCC-----C-----CCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           52 ---DDDD--FGSYDGYVITGSCNDA-----H-----GNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        52 ---~~~~--~~~~d~iii~G~~~~~-----~-----~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                         ..++  .++||+||||||....     +     +.....+.+.++++++.++++|+.+||.|.++|+.+.
T Consensus        96 ~~~~l~dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag  168 (242)
T 3l3b_A           96 SVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL  168 (242)
T ss_dssp             CEEEGGGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred             cCCChHHCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence               0112  3579999999995321     0     0011225678899999999999999999999999976

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=98.66  E-value=3e-08  Score=71.42  Aligned_cols=101  Identities=15%  Similarity=0.066  Sum_probs=62.8

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-------CCCeEEEEEccCCCC---------C--CCCCCCCcCEE
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-------EGETWDVFHVARGEF---------P--DDDDFGSYDGY   62 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-------~g~~~~~~~~~~~~~---------p--~~~~~~~~d~i   62 (126)
                      |.++||+|+-.+.-...-      +.. ..+.|+.       .+++++++.......         +  ..+++.+||.|
T Consensus         6 ~~~~~v~ill~~g~~~~e------~~~-~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~~~~D~l   78 (209)
T 3er6_A            6 KKNLRVVALAPTGRYFAS------IIS-SLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSFDFTNIL   78 (209)
T ss_dssp             -CCEEEEEECCCTTSCHH------HHH-HHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGCSCCSEE
T ss_pred             CCCeEEEEEEeCCCCHHH------HHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCccccCCCCEE
Confidence            557899999887665321      111 2233332       235666665432110         0  11235689999


Q ss_pred             EEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           63 VITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        63 ii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      |||||...........+.+.++|+++.++++++.+||-|..+|+++
T Consensus        79 ivpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a  124 (209)
T 3er6_A           79 IIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA  124 (209)
T ss_dssp             EECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred             EECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence            9999963211000112567889999999999999999999999986

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=98.65  E-value=5.1e-08  Score=68.80  Aligned_cols=96  Identities=20%  Similarity=0.170  Sum_probs=64.3

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCC---------CC--CCCC--CCcCEEEEcCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEF---------PD--DDDF--GSYDGYVITGSC   68 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~---------p~--~~~~--~~~d~iii~G~~   68 (126)
                      |+||+|+-.+.-...      ++.. ..+.|++ .+.+++++.+..+..         ++  .++.  .+||+|+||||.
T Consensus         1 m~~i~ill~~g~~~~------e~~~-~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~   73 (188)
T 2fex_A            1 MTRIAIALAQDFADW------EPAL-LAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGL   73 (188)
T ss_dssp             CCEEEEECCTTBCTT------SSHH-HHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBS
T ss_pred             CcEEEEEeCCCchHH------HHHH-HHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCC
Confidence            479999987654421      2333 3466777 889999887643211         10  0122  379999999995


Q ss_pred             CCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           69 NDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        69 ~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .....   ....+.++|+++.++++++.+||.|.++|+.+
T Consensus        74 ~~~~~---~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a  110 (188)
T 2fex_A           74 SWEKG---TAADLGGLVKRFRDRDRLVAGICAAASALGGT  110 (188)
T ss_dssp             HHHHT---CCCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred             ccccc---ccHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            31111   11346678888888999999999999999986

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.63  E-value=1.2e-07  Score=65.99  Aligned_cols=97  Identities=23%  Similarity=0.307  Sum_probs=62.3

Q ss_pred             CeEEEEEcCCCch-HHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-CC---------CC--CCC----CCCcCEEEEcC
Q 033165            4 KKFAVLLCAEDSE-YVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-EF---------PD--DDD----FGSYDGYVITG   66 (126)
Q Consensus         4 ~ki~Il~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~---------p~--~~~----~~~~d~iii~G   66 (126)
                      +||+|+..+.... .+.+.        .+++.+.+++++++.+..+ ..         ++  .++    ..+||.||+||
T Consensus         3 ~~v~ill~~~~~g~~~~~~--------~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpG   74 (175)
T 3cne_A            3 KKVAVLAVNPVNGCGLFQY--------LEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSC   74 (175)
T ss_dssp             CEEEEEECSSBCHHHHHHH--------HHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEEC
T ss_pred             cEEEEEEecCcCCCccchh--------hheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECC
Confidence            5899998872111 00000        1122267888888876521 00         00  112    36799999999


Q ss_pred             C--CCCCCC--CchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           67 S--CNDAHG--NDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        67 ~--~~~~~~--~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      |  ...+..  +.+....+.++|+++.++++|+.+||.|.++|+++
T Consensus        75 G~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  120 (175)
T 3cne_A           75 GDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT  120 (175)
T ss_dssp             CTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred             CcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            9  422211  12356778899999999999999999999999986

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=98.59  E-value=3.4e-07  Score=76.28  Aligned_cols=99  Identities=12%  Similarity=0.077  Sum_probs=69.7

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-----CCCCCCCCCcCEEEEcCCCCCCC-----
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-----FPDDDDFGSYDGYVITGSCNDAH-----   72 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-----~p~~~~~~~~d~iii~G~~~~~~-----   72 (126)
                      .+||+||-.+...+..+     + ....+.|++.|.+++++.+..++     +.. .+...||+|||+||..+..     
T Consensus       537 grKVaILvadG~fE~~E-----l-~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~-~~s~~fDAVvlPGG~~~~~~~~~~  609 (688)
T 3ej6_A          537 TLRVGVLSTTKGGSLDK-----A-KALKEQLEKDGLKVTVIAEYLASGVDQTYSA-ADATAFDAVVVAEGAERVFSGKGA  609 (688)
T ss_dssp             TCEEEEECCSSSSHHHH-----H-HHHHHHHHHTTCEEEEEESSCCTTCCEETTT-CCGGGCSEEEECTTCCTTTSTTTT
T ss_pred             CCEEEEEccCCCccHHH-----H-HHHHHHHHHCCCEEEEEeCCCCCCcccCccc-CChhcCcEEEECCCcccccccccc
Confidence            57999998876223221     1 12557889999999999874321     111 1335899999999975421     


Q ss_pred             -CCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           73 -GNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        73 -~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                       +......+..++++++.+.+|||.+||-|-|+|..+
T Consensus       610 ~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A  646 (688)
T 3ej6_A          610 MSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSI  646 (688)
T ss_dssp             CCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred             hhhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence             222223467789999999999999999999999885

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=98.59  E-value=6.6e-08  Score=69.83  Aligned_cols=98  Identities=14%  Similarity=0.126  Sum_probs=65.4

Q ss_pred             CeEEEEEcCCC---------chHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----------------------
Q 033165            4 KKFAVLLCAED---------SEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----------------------   52 (126)
Q Consensus         4 ~ki~Il~~~~~---------~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----------------------   52 (126)
                      +||+|+-.+..         ....     ++.. ..+.|++.|++++++.+..+..+.                      
T Consensus         6 ~kv~ill~~~~~~~~~~~~G~~~~-----e~~~-p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~   79 (224)
T 1u9c_A            6 KRVLMVVTNHTTITDDHKTGLWLE-----EFAV-PYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHT   79 (224)
T ss_dssp             CEEEEEECCCCEEETTEECCBCHH-----HHHH-HHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSB
T ss_pred             ceEEEEECCcccccCCCCCceeHH-----HHHH-HHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCC
Confidence            68999988422         1111     1222 346778889999998765322110                      


Q ss_pred             --CCC--CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           53 --DDD--FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        53 --~~~--~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                        .++  ..+||+|+|+||.....+ ......+.++|+++.++++||.+||.|.++|+.+
T Consensus        80 ~~l~~~~~~~~D~livpGG~~~~~~-l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a  138 (224)
T 1u9c_A           80 ARLSKDDAHGFDAIFLPGGHGTMFD-FPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA  138 (224)
T ss_dssp             EECCGGGGSSCSEEEECCCTTHHHH-STTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             CChHHcChhhCCEEEECCCcchHHH-hhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence              012  247999999999643211 1123568889999999999999999999999986

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=98.55  E-value=9.4e-08  Score=70.85  Aligned_cols=104  Identities=12%  Similarity=0.012  Sum_probs=67.2

Q ss_pred             CCeEEEEEcCCCchHHH--HhhCC----HHHHHHHHHhhCCCeEEEEEccCCCCC-------------------------
Q 033165            3 GKKFAVLLCAEDSEYVK--KKYGG----YFGVFVRMLAEEGETWDVFHVARGEFP-------------------------   51 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~--~~~~~----~~~~~~~~l~~~g~~~~~~~~~~~~~p-------------------------   51 (126)
                      |+||+|+.++.......  ..-|-    +.. -.+.|++.|+++++..+......                         
T Consensus         9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~-p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~   87 (247)
T 3n7t_A            9 PRKALLAITSAHPPFWPDGKRTGLFFSEALH-PFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHF   87 (247)
T ss_dssp             CSEEEEECCCCCCBCSTTSCBCCBCHHHHHH-HHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHH
T ss_pred             CCeEEEEECCCCcccCCCCCCCcccHHHHHH-HHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHH
Confidence            58999999874210000  00011    111 23678899999999887422100                         


Q ss_pred             -------C--CC--CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           52 -------D--DD--DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        52 -------~--~~--~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                             .  .+  +.++||+|+|+||.... .+......+.++++++.++++||.+||.|.++|+.+
T Consensus        88 ~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~-~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a  154 (247)
T 3n7t_A           88 MEKMNKQVFKAGDLAPHDYGLMFVCGGHGAL-YDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI  154 (247)
T ss_dssp             HHHHHHCCEEGGGSCGGGCSEEEECCSTTHH-HHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred             HHHHhccCCCHHHCChhhCCEEEEeCCCchh-hhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence                   0  01  23579999999996421 112233568889999999999999999999999886

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=98.52  E-value=1.6e-07  Score=73.23  Aligned_cols=98  Identities=22%  Similarity=0.333  Sum_probs=66.7

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC------------------------C-CC--CC
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE------------------------F-PD--DD   54 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~------------------------~-p~--~~   54 (126)
                      .++||+||-.+.-+..      ++. ...+.|++.|++++++.+....                        + +.  .+
T Consensus        11 ~~~kv~ill~dg~e~~------E~~-~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~   83 (396)
T 3uk7_A           11 NSRTVLILCGDYMEDY------EVM-VPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFD   83 (396)
T ss_dssp             CCCEEEEECCTTEEHH------HHH-HHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGG
T ss_pred             cCCeEEEEeCCCccHH------HHH-HHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChh
Confidence            3579999987655431      112 2346788899999888764210                        0 00  01


Q ss_pred             --CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           55 --DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        55 --~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                        +..+||+|+|+||.. + +.......+.++++++.++++|+.+||-|.++|+.+
T Consensus        84 ~~~~~~~D~livpGG~~-~-~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a  137 (396)
T 3uk7_A           84 EVDLSKYDGLVIPGGRA-P-EYLALTASVVELVKEFSRSGKPIASICHGQLILAAA  137 (396)
T ss_dssp             GCCGGGCSEEEECCBSH-H-HHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred             hcCcccCCEEEECCCcc-h-hhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence              235799999999953 2 111112567889999999999999999999999986

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=98.44  E-value=7.3e-07  Score=74.37  Aligned_cols=101  Identities=14%  Similarity=0.066  Sum_probs=68.8

Q ss_pred             CCCCeEEEEEc--CCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC----CCCCCCCcCEEEEcCCCCCC---
Q 033165            1 MGGKKFAVLLC--AEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP----DDDDFGSYDGYVITGSCNDA---   71 (126)
Q Consensus         1 M~~~ki~Il~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p----~~~~~~~~d~iii~G~~~~~---   71 (126)
                      |..+||+||-.  +..+ ..+      ...+.+.|++.|.+++++.+..++..    +..+..+||+|||+||..+.   
T Consensus       527 l~g~kVaIL~a~~dGfe-~~E------~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~  599 (688)
T 2iuf_A          527 LDGLKVGLLASVNKPAS-IAQ------GAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGA  599 (688)
T ss_dssp             CTTCEEEEECCTTCHHH-HHH------HHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCT
T ss_pred             CCCCEEEEEecCCCCCc-HHH------HHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccc
Confidence            45689999976  3322 111      12356889999999999987533211    11134589999999995330   


Q ss_pred             ------------CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           72 ------------HGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        72 ------------~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                                  .+...-..+..++++++.+.+|||.+||.|-++|..+
T Consensus       600 ~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a  648 (688)
T 2iuf_A          600 DSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG  648 (688)
T ss_dssp             TTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred             cccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence                        1111223567889999999999999999999999875

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=98.43  E-value=4e-07  Score=76.34  Aligned_cols=102  Identities=10%  Similarity=0.034  Sum_probs=69.0

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC--------CC---CCC--CCCcCEEEEcCC
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF--------PD---DDD--FGSYDGYVITGS   67 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--------p~---~~~--~~~~d~iii~G~   67 (126)
                      |.++||+||-.+.-...      ++. ...+.|+..|++++++.+..+.+        ..   .++  ..+||+|||+||
T Consensus       532 m~~rkVaILl~dGfe~~------El~-~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG  604 (715)
T 1sy7_A          532 IKSRRVAIIIADGYDNV------AYD-AAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGG  604 (715)
T ss_dssp             CTTCEEEEECCTTBCHH------HHH-HHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCC
T ss_pred             CCCCEEEEEEcCCCCHH------HHH-HHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCC
Confidence            55689999988665432      111 24567888899999887643211        00   112  246999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165           68 CNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVF  110 (126)
Q Consensus        68 ~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~G  110 (126)
                      .... +.......+.++|+++.++++||.+||-|..+|+.++|
T Consensus       605 ~~~~-~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG  646 (715)
T 1sy7_A          605 AKAA-ETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA  646 (715)
T ss_dssp             HHHH-HHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred             cccH-hhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence            4221 11111245788999999999999999999999999844

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=98.41  E-value=7.8e-07  Score=65.02  Aligned_cols=97  Identities=16%  Similarity=0.127  Sum_probs=65.5

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCC---------C--CCCCCCCcCEEEEcCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEF---------P--DDDDFGSYDGYVITGSCND   70 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~---------p--~~~~~~~~d~iii~G~~~~   70 (126)
                      ++||+||-.+.-...      ++.. ..+.|+. .+++++++.+..+..         +  ..++..+||.|+||||+..
T Consensus         5 ~~~V~ill~~gf~~~------e~~~-p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~~~~D~livpGG~g~   77 (231)
T 3noq_A            5 AVQIGFLLFPEVQQL------DLTG-PHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTGV   77 (231)
T ss_dssp             CEEEEEECCTTCCHH------HHHH-HHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTCCCCSEEEECCSTTH
T ss_pred             cEEEEEEEeCCCcHH------HHHH-HHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHCCcCCEEEECCCCCh
Confidence            368999988766532      1222 3466766 688888776532100         0  1134567999999999632


Q ss_pred             CCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           71 AHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .  +....+.+.++|++..++++++.+||-|..+|+.+
T Consensus        78 ~--~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a  113 (231)
T 3noq_A           78 G--ALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAA  113 (231)
T ss_dssp             H--HHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred             h--hhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence            1  11112567889999999999999999999999985

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=98.41  E-value=6e-07  Score=75.38  Aligned_cols=96  Identities=16%  Similarity=0.067  Sum_probs=67.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC--------CC---CC--CCCCcCEEEEcCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF--------PD---DD--DFGSYDGYVITGSCN   69 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--------p~---~~--~~~~~d~iii~G~~~   69 (126)
                      .+||+||-.+.-++..      +. ...+.|++.|.+++++.+..+.+        ..   .+  ....||+|||+|| .
T Consensus       600 grKVaILlaDGfEe~E------l~-~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g  671 (753)
T 3ttv_A          600 GRVVAILLNDEVRSAD------LL-AILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-N  671 (753)
T ss_dssp             TCEEEEECCTTCCHHH------HH-HHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-C
T ss_pred             CCEEEEEecCCCCHHH------HH-HHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-C
Confidence            5799999887665421      11 24578888999999887643210        00   11  1236999999999 2


Q ss_pred             CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                       + +......++.++|+++.+.++||.+||-|.++|+.+
T Consensus       672 -~-~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A  708 (753)
T 3ttv_A          672 -I-ADIADNGDANYYLMEAYKHLKPIALAGDARKFKATI  708 (753)
T ss_dssp             -G-GGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred             -h-HHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence             2 212223568889999999999999999999999986

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=98.41  E-value=1.9e-07  Score=67.07  Aligned_cols=98  Identities=19%  Similarity=0.181  Sum_probs=66.4

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC-CCCC---------C--CCCC--CCcCEEEEcCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR-GEFP---------D--DDDF--GSYDGYVITGSC   68 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~p---------~--~~~~--~~~d~iii~G~~   68 (126)
                      ++||+|+-.+.-...      ++.. ..+.|+..|++++++.+.. ....         +  .+++  .+||.|+||||.
T Consensus         9 ~~~v~ill~~g~~~~------e~~~-~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~   81 (208)
T 3ot1_A            9 SKRILVPVAHGSEEM------ETVI-IVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGV   81 (208)
T ss_dssp             CCEEEEEECTTCCHH------HHHH-HHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCH
T ss_pred             CCeEEEEECCCCcHH------HHHH-HHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCc
Confidence            469999988766532      1122 3467888899999887642 1110         0  1122  479999999995


Q ss_pred             CCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH-HHHHHH
Q 033165           69 NDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH-QVRAIT  108 (126)
Q Consensus        69 ~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~-Q~la~~  108 (126)
                      ... ++......+.++|+++.++++++.+||-|. .+|+++
T Consensus        82 ~~~-~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a  121 (208)
T 3ot1_A           82 GGA-QAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ  121 (208)
T ss_dssp             HHH-HHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred             hHH-HHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence            222 111112467889999999999999999999 899874

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=98.40  E-value=5.9e-07  Score=70.06  Aligned_cols=98  Identities=22%  Similarity=0.228  Sum_probs=66.5

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC------------------------C-CC--CC
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE------------------------F-PD--DD   54 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~------------------------~-p~--~~   54 (126)
                      .++||+||-.+.-+..      ++.. ..+.|++.|++++++.+....                        + +.  .+
T Consensus       204 ~~~ki~ill~dg~~~~------e~~~-~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~  276 (396)
T 3uk7_A          204 ANKRILFLCGDYMEDY------EVKV-PFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFD  276 (396)
T ss_dssp             CCCEEEEECCTTEEHH------HHHH-HHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGG
T ss_pred             ccceEEEEecCCCcch------hHHH-HHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHH
Confidence            3679999988665432      1222 346777889999888654211                        0 00  11


Q ss_pred             --CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           55 --DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        55 --~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                        ...+||.|+||||.. + +.......+.++++++.++++|+.+||.|.++|+++
T Consensus       277 ~~~~~~~D~livpGg~~-~-~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a  330 (396)
T 3uk7_A          277 DLVSSSYDALVIPGGRA-P-EYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA  330 (396)
T ss_dssp             GCCGGGCSEEEECCBSH-H-HHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred             HCCcccCCEEEECCCcc-h-hhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence              235799999999963 1 111122567889999999999999999999999986

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.39  E-value=9.8e-07  Score=68.83  Aligned_cols=97  Identities=20%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC----------C-CC--CCCC--CCcCEEEEcCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE----------F-PD--DDDF--GSYDGYVITGS   67 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----------~-p~--~~~~--~~~d~iii~G~   67 (126)
                      |+||+||-.+.-...      ++.. ..+.|+..|++++++.+..+.          + ++  .+++  .+||.||||||
T Consensus        10 mkkV~ILl~dgf~~~------El~~-p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG   82 (365)
T 3fse_A           10 KKKVAILIEQAVEDT------EFII-PCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGG   82 (365)
T ss_dssp             -CEEEEECCTTBCHH------HHHH-HHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCB
T ss_pred             ceEEEEEECCCCcHH------HHHH-HHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECC
Confidence            579999988765432      1222 346788889999888764321          1 00  1222  36999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           68 CNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        68 ~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .. + +.......+.++|+++.++++++.+||-|..+|+.+
T Consensus        83 ~g-~-~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A  121 (365)
T 3fse_A           83 MA-P-DKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG  121 (365)
T ss_dssp             TH-H-HHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             cc-h-hhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence            63 2 111122567889999999999999999999999985

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=98.31  E-value=7.4e-07  Score=64.22  Aligned_cols=99  Identities=15%  Similarity=0.189  Sum_probs=62.7

Q ss_pred             CCC-CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC--CCeEEEEEccCC------CC---C--CCCCCCCcCEEEEcC
Q 033165            1 MGG-KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE--GETWDVFHVARG------EF---P--DDDDFGSYDGYVITG   66 (126)
Q Consensus         1 M~~-~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~------~~---p--~~~~~~~~d~iii~G   66 (126)
                      |++ +||+||-.+.-...      ++.. ..+.|+..  +++++++.+..+      .+   +  ..++...+|.|+|||
T Consensus         1 m~~~~~V~ill~~g~~~~------e~~~-~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~~~~D~livpG   73 (211)
T 3mgk_A            1 MSLSYRIDVLLFNKFETL------DVFG-PVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPG   73 (211)
T ss_dssp             ---CEEEEEECCTTCCHH------HHHH-HHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCSSSEEEEEECC
T ss_pred             CCCceEEEEEEeCCcchh------HHHH-HHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhCCCCCEEEECC
Confidence            553 58999988776542      1222 34667665  467766644311      00   0  112345699999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           67 SCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      |....  .......+.++|+++.++++++.+||-|..+|+.+
T Consensus        74 G~~~~--~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a  113 (211)
T 3mgk_A           74 GSGTR--EKVNDDNFINFIGNMVKESKYIISVCTGSALLSKA  113 (211)
T ss_dssp             STHHH--HHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred             Ccchh--hhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence            95321  11112467889999999999999999999999985

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=98.30  E-value=2.3e-06  Score=64.64  Aligned_cols=79  Identities=14%  Similarity=0.071  Sum_probs=57.3

Q ss_pred             HHHHhhCCCeEEEEEccCCCCC--------------------------C---CC------CCCCcCEEEEcCCCCCCCCC
Q 033165           30 VRMLAEEGETWDVFHVARGEFP--------------------------D---DD------DFGSYDGYVITGSCNDAHGN   74 (126)
Q Consensus        30 ~~~l~~~g~~~~~~~~~~~~~p--------------------------~---~~------~~~~~d~iii~G~~~~~~~~   74 (126)
                      .+.|++.|++++++.+..+..+                          .   .+      +.++||+|||+||.... .+
T Consensus        82 ~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~-~~  160 (291)
T 1n57_A           82 LYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGAL-IG  160 (291)
T ss_dssp             HHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGG-SS
T ss_pred             HHHHHHCCCEEEEEeCCCCcccccccccccccHHHHHHHHhccceecCCccHHHHhhhccCcccCCEEEecCCcchh-hh
Confidence            3667888999999987533221                          0   01      24689999999995432 12


Q ss_pred             chHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           75 DVWICKLIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        75 ~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      ......+.++|+++.+++++|.+||.|..+|+.+-
T Consensus       161 l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~  195 (291)
T 1n57_A          161 LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR  195 (291)
T ss_dssp             GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred             hhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence            22335688999999999999999999999888763

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=98.21  E-value=4.9e-06  Score=61.68  Aligned_cols=96  Identities=11%  Similarity=0.127  Sum_probs=63.9

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHH-hhCCCeEEEEEccCCCC---------CC--CCCC-CCcCEEEEcCCC-C
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRML-AEEGETWDVFHVARGEF---------PD--DDDF-GSYDGYVITGSC-N   69 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~---------p~--~~~~-~~~d~iii~G~~-~   69 (126)
                      +||+||-.+.-...      ++.. ..+.| ...+++++++.+..+..         ++  .++. ..||.|+|+||. .
T Consensus        24 ~~I~ill~~gf~~~------e~~~-p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~~yD~liVPGG~~g   96 (253)
T 3ewn_A           24 EQIAMLVYPGMTVM------DLVG-PHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPRDLTVLFAPGGTDG   96 (253)
T ss_dssp             CEEEEECCTTBCHH------HHHH-HHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCSSCSEEEECCBSHH
T ss_pred             eEEEEEeCCCCcHH------HHHH-HHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCCCCCEEEECCCccc
Confidence            68999988765432      1222 34566 46788888887542211         00  1122 357999999996 2


Q ss_pred             CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      ..  .......+.++|+++.++++++.+||-|..+|+.+
T Consensus        97 ~~--~l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A  133 (253)
T 3ewn_A           97 TL--AAASDAETLAFMADRGARAKYITSVCSGSLILGAA  133 (253)
T ss_dssp             HH--HHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred             hh--hhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence            11  11112567889999999999999999999999986

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=98.20  E-value=2.1e-06  Score=61.06  Aligned_cols=98  Identities=16%  Similarity=0.086  Sum_probs=59.3

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC------------CC--CCC-------CCCcC
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF------------PD--DDD-------FGSYD   60 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~------------p~--~~~-------~~~~d   60 (126)
                      .|+||+|+-.+.-++.      ++.. ..+.|++.|.+++++.+....-            ++  .++       .++||
T Consensus         3 ~M~kV~ill~dGfe~~------E~~~-p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD   75 (194)
T 4gdh_A            3 HMVKVCLFVADGTDEI------EFSA-PWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYD   75 (194)
T ss_dssp             --CCEEEEEETTCCHH------HHHH-HHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCS
T ss_pred             CCCEEEEEECCCcCHH------HHHH-HHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCC
Confidence            4789999998776532      1222 2367788899888776542110            00  001       13589


Q ss_pred             EEEEcCCCCCCCCCchHHHHHHHHHHHHHhc-CCcEEEEchHHHHHHHH
Q 033165           61 GYVITGSCNDAHGNDVWICKLIALLKQLDSL-RKKVLGICFGHQVRAIT  108 (126)
Q Consensus        61 ~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~-~~PvlGIC~G~Q~la~~  108 (126)
                      +||||||.... +.....+.+.++++++.++ ++++..||-|.. |+.+
T Consensus        76 ~lvvPGG~~~~-~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~-l~~a  122 (194)
T 4gdh_A           76 IAIIPGGGLGA-KTLSTTPFVQQVVKEFYKKPNKWIGMICAGTL-TAKT  122 (194)
T ss_dssp             EEEECCCHHHH-HHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGH-HHHH
T ss_pred             EEEECCCchhH-hHhhhCHHHHHHHHHhhhcCCceEEeeccccc-chhh
Confidence            99999994322 1111124577888887654 789999999985 4443

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=97.70  E-value=2.4e-05  Score=57.35  Aligned_cols=96  Identities=16%  Similarity=0.162  Sum_probs=56.9

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC--CeEEEEEccCC------CC---CC--CCCCCCcCEEEEcCCC
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG--ETWDVFHVARG------EF---PD--DDDFGSYDGYVITGSC   68 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~------~~---p~--~~~~~~~d~iii~G~~   68 (126)
                      .++||+|+-.+.-...      ++.. ..+.|+..+  ++++++. ..+      .+   ++  .++..+||.||||||.
T Consensus        19 ~~~kV~ill~dGf~~~------e~~~-p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~~~~~D~liVPGG~   90 (236)
T 3bhn_A           19 GMYKVGIVLFDDFTDV------DFFL-MNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSEVKEQDVVLITSGY   90 (236)
T ss_dssp             -CEEEEEECCTTBCHH------HHHH-HHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGGGGGCSEEEECCCT
T ss_pred             CCCEEEEEeCCCChHH------HHHH-HHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCcccccccCCCEEEEcCCc
Confidence            3578999988665432      1222 345666655  5777665 311      00   11  1234679999999993


Q ss_pred             CCCCCCchHHHHHHHHHHHHHhcCC-cEEEEchHHHHHHHH
Q 033165           69 NDAHGNDVWICKLIALLKQLDSLRK-KVLGICFGHQVRAIT  108 (126)
Q Consensus        69 ~~~~~~~~~~~~~~~~i~~~~~~~~-PvlGIC~G~Q~la~~  108 (126)
                      ..+. +....+.+.++|  ..++++ ++.+||-|..+|+.+
T Consensus        91 ~g~~-~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~A  128 (236)
T 3bhn_A           91 RGIP-AALQDENFMSAL--KLDPSRQLIGSICAGSFVLHEL  128 (236)
T ss_dssp             THHH-HHHTCHHHHHHC--CCCTTTCEEEEETTHHHHHHHT
T ss_pred             cCHh-hhccCHHHHHHH--HhCCCCCEEEEEcHHHHHHHHc
Confidence            1111 111124566677  344566 999999999999986

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=97.41  E-value=3.5e-05  Score=58.34  Aligned_cols=97  Identities=12%  Similarity=0.061  Sum_probs=64.8

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC-eEEEEEccCCC-CCCC---CCCCCcCEEEEcCCCCCCCCCchHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE-TWDVFHVARGE-FPDD---DDFGSYDGYVITGSCNDAHGNDVWI   78 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~-~p~~---~~~~~~d~iii~G~~~~~~~~~~~~   78 (126)
                      .||+++-+-...+.      .|...+.+.|++.|. +++++.+...+ ...+   +.+.+.|+|+++||..  ..-..++
T Consensus        57 ~~I~~IptAs~~~~------~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt--~~l~~~l  128 (291)
T 3en0_A           57 AIIGIIPSASREPL------LIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQ--LRLCGLL  128 (291)
T ss_dssp             CEEEEECTTCSSHH------HHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCH--HHHHHHH
T ss_pred             CeEEEEeCCCCChH------HHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCH--HHHHHHH
Confidence            68999976555432      356667888888898 67776653211 1110   1356899999999932  1101112


Q ss_pred             --HHHHHHHHHHHhcC-CcEEEEchHHHHHHHH
Q 033165           79 --CKLIALLKQLDSLR-KKVLGICFGHQVRAIT  108 (126)
Q Consensus        79 --~~~~~~i~~~~~~~-~PvlGIC~G~Q~la~~  108 (126)
                        ..+.+.|+++++++ +|+.|.|.|+-+++..
T Consensus       129 ~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~~  161 (291)
T 3en0_A          129 ADTPLMDRIRQRVHNGEISLAGTSAGAAVMGHH  161 (291)
T ss_dssp             TTCHHHHHHHHHHHTTSSEEEEETHHHHTTSSE
T ss_pred             HhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhHh
Confidence              23667889998888 9999999999998753

>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*

Probab=95.61  E-value=0.036  Score=38.24  Aligned_cols=42  Identities=17%  Similarity=0.086  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR   47 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   47 (126)
                      |+|+||+|+..... .+.+.    ....+.+.+++.|.+++++++.+
T Consensus         3 M~M~kilii~~S~~-g~T~~----la~~i~~~l~~~g~~v~~~~l~~   44 (200)
T 2a5l_A            3 MSSPYILVLYYSRH-GATAE----MARQIARGVEQGGFEARVRTVPA   44 (200)
T ss_dssp             --CCEEEEEECCSS-SHHHH----HHHHHHHHHHHTTCEEEEEBCCC
T ss_pred             CCcceEEEEEeCCC-ChHHH----HHHHHHHHHhhCCCEEEEEEhhh
Confidence            78899999988753 22111    22334455566788898888754

>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A

Probab=95.52  E-value=0.066  Score=40.22  Aligned_cols=86  Identities=12%  Similarity=0.149  Sum_probs=46.7

Q ss_pred             CCC-CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-----------------CCC---C-CCCCC
Q 033165            1 MGG-KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-----------------FPD---D-DDFGS   58 (126)
Q Consensus         1 M~~-~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-----------------~p~---~-~~~~~   58 (126)
                      |++ +|++|+-+..... .    ......+.++|++.|.++.+......+                 ...   . ...++
T Consensus         1 m~~m~ki~iI~n~~~~~-~----~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   75 (307)
T 1u0t_A            1 MTAHRSVLLVVHTGRDE-A----TETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADG   75 (307)
T ss_dssp             ----CEEEEEESSSGGG-G----SHHHHHHHHHHHTTTCEEEEEC-----------------------------------
T ss_pred             CCCCCEEEEEEeCCCHH-H----HHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccC
Confidence            654 5899887754422 1    123456778898889887654322111                 110   0 12356


Q ss_pred             cCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165           59 YDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG  101 (126)
Q Consensus        59 ~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G  101 (126)
                      +|.+|+.||-          ..+....+.+...++|++||=.|
T Consensus        76 ~d~vi~~GGD----------GT~l~a~~~~~~~~~pvlgi~~G  108 (307)
T 1u0t_A           76 CELVLVLGGD----------GTFLRAAELARNASIPVLGVNLG  108 (307)
T ss_dssp             CCCEEEEECH----------HHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CCEEEEEeCC----------HHHHHHHHHhccCCCCEEEEeCC
Confidence            8999999992          23444455555568999999655

>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}

Probab=95.03  E-value=0.033  Score=38.54  Aligned_cols=41  Identities=15%  Similarity=0.101  Sum_probs=24.4

Q ss_pred             CC-CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC
Q 033165            1 MG-GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR   47 (126)
Q Consensus         1 M~-~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   47 (126)
                      |+ |+||+|+... . ...+.    ....+.+.+++.|.+++++++.+
T Consensus         1 M~~mmkilii~~S-~-g~T~~----la~~i~~~l~~~g~~v~~~~l~~   42 (199)
T 2zki_A            1 MSCKPNILVLFYG-Y-GSIVE----LAKEIGKGAEEAGAEVKIRRVRE   42 (199)
T ss_dssp             --CCCEEEEEECC-S-SHHHH----HHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCCCcEEEEEEeC-c-cHHHH----HHHHHHHHHHhCCCEEEEEehhH
Confidence            54 6799999887 3 22211    22334445555688999988754

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=94.99  E-value=0.065  Score=39.69  Aligned_cols=81  Identities=6%  Similarity=-0.088  Sum_probs=51.1

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC-CCCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP-DDDDFGSYDGYVITGSCNDAHGNDVWICKL   81 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p-~~~~~~~~d~iii~G~~~~~~~~~~~~~~~   81 (126)
                      |+|+||+.-....        .-..+|.++|+..|++++++....  ++ ..+++.+||.||+.-....     .+....
T Consensus         4 m~~vLiV~g~~~~--------~~a~~l~~aL~~~g~~V~~i~~~~--~~~~~~~L~~yDvIIl~d~~~~-----~l~~~~   68 (259)
T 3rht_A            4 MTRVLYCGDTSLE--------TAAGYLAGLMTSWQWEFDYIPSHV--GLDVGELLAKQDLVILSDYPAE-----RMTAQA   68 (259)
T ss_dssp             --CEEEEESSCTT--------TTHHHHHHHHHHTTCCCEEECTTS--CBCSSHHHHTCSEEEEESCCGG-----GBCHHH
T ss_pred             CceEEEECCCCch--------hHHHHHHHHHHhCCceEEEecccc--cccChhHHhcCCEEEEcCCccc-----cCCHHH
Confidence            6899999633221        234568889999999999887542  33 2346789999999743221     122345


Q ss_pred             HHHHHHHHhcCCcEEEE
Q 033165           82 IALLKQLDSLRKKVLGI   98 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGI   98 (126)
                      .+.|++.++.+.=++.+
T Consensus        69 ~~~L~~yV~~GGgLi~~   85 (259)
T 3rht_A           69 IDQLVTMVKAGCGLVML   85 (259)
T ss_dssp             HHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHhCCeEEEe
Confidence            56677777777666665

>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A

Probab=94.34  E-value=0.0076  Score=41.66  Aligned_cols=69  Identities=13%  Similarity=0.081  Sum_probs=43.8

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCC-CCcCEEEEcCCCCCC
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDF-GSYDGYVITGSCNDA   71 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~-~~~d~iii~G~~~~~   71 (126)
                      |.++|++||-+++.--. -+.+++...++..+|++.|.++..+.+..|+ ...     +.+ .++|.||.+||.+-.
T Consensus         5 ~~~~rv~ii~tGdEl~~-G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g   79 (164)
T 3pzy_A            5 MTTRSARVIIASTRASS-GEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIA   79 (164)
T ss_dssp             --CCEEEEEEECHHHHC-----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred             CCCCEEEEEEECCCCCC-CceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence            77899999988765321 1236788889999999999887655443333 211     012 379999999996543

>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A

Probab=93.91  E-value=0.034  Score=39.47  Aligned_cols=73  Identities=11%  Similarity=-0.038  Sum_probs=43.0

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe--EEEEEccCCCCCCC-----CCCC--CcCEEEEcCCCCCC
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET--WDVFHVARGEFPDD-----DDFG--SYDGYVITGSCNDA   71 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~~~p~~-----~~~~--~~d~iii~G~~~~~   71 (126)
                      |.++|++||-+++.-.. -+-+++...++.++|++.|.+  +..+.+..++....     +-++  ++|.||.+||.+..
T Consensus         1 ~~~~rv~IIttGdEl~~-G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g   79 (195)
T 1di6_A            1 MATLRIGLVSISDRASS-GVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPA   79 (195)
T ss_dssp             -CCEEEEEEEEECC--------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred             CCCCEEEEEEECCCCCC-CeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence            88999999999887532 123567778899999998877  33333322321100     0112  58999999997544


Q ss_pred             CCC
Q 033165           72 HGN   74 (126)
Q Consensus        72 ~~~   74 (126)
                      .+|
T Consensus        80 ~~D   82 (195)
T 1di6_A           80 RRD   82 (195)
T ss_dssp             TTC
T ss_pred             CCc
Confidence            333

>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=93.89  E-value=0.019  Score=39.50  Aligned_cols=43  Identities=19%  Similarity=0.287  Sum_probs=32.2

Q ss_pred             CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165           57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF  100 (126)
Q Consensus        57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~  100 (126)
                      .+.|.|||.||-+.+.-.. -.++..++|.++.+...+++||||
T Consensus        83 ~~~D~vVllGGLAMPk~~v-~~e~v~~li~ki~~~~~kiiGvCF  125 (157)
T 2r47_A           83 GNVDVLVLLGGLSMPGIGS-DIEDVKKLVEDALEEGGELMGLCY  125 (157)
T ss_dssp             CCEEEEEEEGGGGSTTTSC-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCEEEEeccccCCCCCC-CHHHHHHHHHHhhcCCCCEEEEEh
Confidence            5899999999966553221 245677888888766788999997

>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}

Probab=93.63  E-value=1.4  Score=32.63  Aligned_cols=87  Identities=15%  Similarity=0.077  Sum_probs=54.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC-CeEEEEEccC-----CCCCCCCCCCCcCEEEEcCCCCCCCCCch
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG-ETWDVFHVAR-----GEFPDDDDFGSYDGYVITGSCNDAHGNDV   76 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~-----~~~p~~~~~~~~d~iii~G~~~~~~~~~~   76 (126)
                      ..|+||+.-....+ .    ..-...+.++|++.+ +++++..-..     ..+ . +.|.+||.||+.-. ..     .
T Consensus         4 ~~kvLiv~G~~~H~-~----~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f-~-~~L~~~D~vV~~~~-~~-----~   70 (281)
T 4e5v_A            4 PIKTLLITGQNNHN-W----QVSHVVLKQILENSGRFDVDFVISPEQGKDMSGF-V-LDFSPYQLVVLDYN-GD-----S   70 (281)
T ss_dssp             CEEEEEEESCCSSC-H----HHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTC-C-CCCTTCSEEEECCC-SS-----C
T ss_pred             ceEEEEEcCCCCCC-h----HHHHHHHHHHHHhcCCEEEEEEeCCccccchhHH-h-hhhhcCCEEEEeCC-CC-----c
Confidence            46889994433211 1    123457888888888 8888876321     112 2 36899999996332 11     1


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165           77 WICKLIALLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        77 ~~~~~~~~i~~~~~~~~PvlGIC~G~  102 (126)
                      +.....+.+.+.++.+.+++|+..+.
T Consensus        71 l~~~~~~~l~~yV~~Ggglv~~H~a~   96 (281)
T 4e5v_A           71 WPEETNRRFLEYVQNGGGVVIYHAAD   96 (281)
T ss_dssp             CCHHHHHHHHHHHHTTCEEEEEGGGG
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            22345556777788899999998653

>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*

Probab=93.51  E-value=0.24  Score=32.44  Aligned_cols=57  Identities=12%  Similarity=0.242  Sum_probs=36.8

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC-CcCEEEEcCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG-SYDGYVITGS   67 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~-~~d~iii~G~   67 (126)
                      |+|++|+.....- +.+    .....+.+.+++.|.+++++++.+.+   .+++. ++|.||+.-+
T Consensus         1 M~ki~I~y~S~tG-nT~----~~A~~ia~~l~~~g~~v~~~~~~~~~---~~~l~~~~d~ii~g~p   58 (148)
T 3f6r_A            1 MSKVLIVFGSSTG-NTE----SIAQKLEELIAAGGHEVTLLNAADAS---AENLADGYDAVLFGCS   58 (148)
T ss_dssp             -CEEEEEEECSSS-HHH----HHHHHHHHHHHTTTCEEEEEETTTBC---CTTTTTTCSEEEEEEC
T ss_pred             CCeEEEEEECCCc-hHH----HHHHHHHHHHHhCCCeEEEEehhhCC---HhHhcccCCEEEEEec
Confidence            4689999876542 222    13445666677778899998875422   23567 8998888644

>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9

Probab=93.34  E-value=0.02  Score=42.05  Aligned_cols=71  Identities=20%  Similarity=0.282  Sum_probs=45.9

Q ss_pred             HHHHHHhhCCCeEEEEEcc--CCCCCCC-CCCCCcCEEEEcCCCCCCCC--CchHH-----HHHHHHHHHHHhcCCcEEE
Q 033165           28 VFVRMLAEEGETWDVFHVA--RGEFPDD-DDFGSYDGYVITGSCNDAHG--NDVWI-----CKLIALLKQLDSLRKKVLG   97 (126)
Q Consensus        28 ~~~~~l~~~g~~~~~~~~~--~~~~p~~-~~~~~~d~iii~G~~~~~~~--~~~~~-----~~~~~~i~~~~~~~~PvlG   97 (126)
                      .+.++|+..+.+++++.+.  ...+|.. +.+++||.||+.+.+.....  ...|.     ....+.|++.++.+..+++
T Consensus        44 ~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGgll~  123 (256)
T 2gk3_A           44 WLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLM  123 (256)
T ss_dssp             HHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHhcCceEEEEecccchhhCCcChhHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCEEEE
Confidence            4677888889888887532  1134521 34689999999986532111  01121     3356778888888999999


Q ss_pred             E
Q 033165           98 I   98 (126)
Q Consensus        98 I   98 (126)
                      |
T Consensus       124 i  124 (256)
T 2gk3_A          124 I  124 (256)
T ss_dssp             E
T ss_pred             E
Confidence            9

>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*

Probab=93.29  E-value=0.69  Score=33.96  Aligned_cols=68  Identities=15%  Similarity=0.101  Sum_probs=44.3

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      ||++|+-+. . +...    .....+.++|++.|.+++              .+++|.||..||-          ..+..
T Consensus         1 mki~ii~n~-~-~~~~----~~~~~l~~~l~~~g~~v~--------------~~~~D~vv~lGGD----------GT~l~   50 (272)
T 2i2c_A            1 MKYMITSKG-D-EKSD----LLRLNMIAGFGEYDMEYD--------------DVEPEIVISIGGD----------GTFLS   50 (272)
T ss_dssp             CEEEEEECC-S-HHHH----HHHHHHHHHHTTSSCEEC--------------SSSCSEEEEEESH----------HHHHH
T ss_pred             CEEEEEECC-C-HHHH----HHHHHHHHHHHHCCCEeC--------------CCCCCEEEEEcCc----------HHHHH
Confidence            489998883 2 2222    234557778888887651              1468999999992          23445


Q ss_pred             HHHHHHhc--CCcEEEEchH
Q 033165           84 LLKQLDSL--RKKVLGICFG  101 (126)
Q Consensus        84 ~i~~~~~~--~~PvlGIC~G  101 (126)
                      ..+.+...  ++|++||=.|
T Consensus        51 aa~~~~~~~~~~PilGIn~G   70 (272)
T 2i2c_A           51 AFHQYEERLDEIAFIGIHTG   70 (272)
T ss_dssp             HHHHTGGGTTTCEEEEEESS
T ss_pred             HHHHHhhcCCCCCEEEEeCC
Confidence            55555544  8999999655

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A

Probab=92.62  E-value=0.22  Score=37.54  Aligned_cols=96  Identities=14%  Similarity=0.110  Sum_probs=54.9

Q ss_pred             CCCCeEEEEEcCCCch-HHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-CC---CCCCCCCCcCEEEEcCCCCCCCCCc
Q 033165            1 MGGKKFAVLLCAEDSE-YVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-EF---PDDDDFGSYDGYVITGSCNDAHGND   75 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~---p~~~~~~~~d~iii~G~~~~~~~~~   75 (126)
                      |.|+|++|+.+..... ...    .....+.++|++.+.+++++..... +.   ......+.+|.||+.||-       
T Consensus        22 m~m~~i~vI~NP~sg~~~~~----~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGD-------   90 (337)
T 2qv7_A           22 MMRKRARIIYNPTSGKEQFK----RELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGD-------   90 (337)
T ss_dssp             SCCEEEEEEECTTSTTSCHH----HHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECH-------
T ss_pred             cccceEEEEECCCCCCCchH----HHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCc-------
Confidence            5567898887754421 111    1234577888888988877653211 00   000112568999999992       


Q ss_pred             hHHHHHHHHHHHH--HhcCCcEEEEchHHH-HHHHHhC
Q 033165           76 VWICKLIALLKQL--DSLRKKVLGICFGHQ-VRAITVF  110 (126)
Q Consensus        76 ~~~~~~~~~i~~~--~~~~~PvlGIC~G~Q-~la~~~G  110 (126)
                         ..+.+.++.+  ...++|+.+|=.|-- .+|+.+|
T Consensus        91 ---GTv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg  125 (337)
T 2qv7_A           91 ---GTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALH  125 (337)
T ss_dssp             ---HHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred             ---hHHHHHHHHHHhCCCCCcEEEecCCcHhHHHHHcC
Confidence               2344555555  335678887765532 3555555

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=92.59  E-value=0.44  Score=30.76  Aligned_cols=55  Identities=15%  Similarity=0.196  Sum_probs=38.3

Q ss_pred             HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165           28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGI   98 (126)
Q Consensus        28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI   98 (126)
                      .|.+++...+++++-           +.+...|.+|+.-|..+.  ..+|+..+   |+.+.+.++|++||
T Consensus        19 ~L~~~l~~~~f~~~~-----------~~I~~~~~vIvL~G~~t~--~s~wv~~E---I~~A~~~gkpIigV   73 (111)
T 1eiw_A           19 VFLERLEQSGLEWRP-----------ATPEDADAVIVLAGLWGT--RRDEILGA---VDLARKSSKPIITV   73 (111)
T ss_dssp             HHHHHHHHHCSCEEE-----------CCSSSCSEEEEEGGGTTT--SHHHHHHH---HHHHTTTTCCEEEE
T ss_pred             HHHHHHhCCCCeeec-----------CccccCCEEEEEeCCCcC--CChHHHHH---HHHHHHcCCCEEEE
Confidence            455666555776663           257889999998886543  34677665   45566789999998

>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A

Probab=92.51  E-value=0.034  Score=39.24  Aligned_cols=67  Identities=15%  Similarity=0.056  Sum_probs=45.8

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCC-CCcCEEEEcCCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDF-GSYDGYVITGSCNDA   71 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~-~~~d~iii~G~~~~~   71 (126)
                      ++|++||-+++.--.- + +++...++..++++.|.++..+.+..|+....     +.+ +++|.||.+||.+-.
T Consensus        30 ~~rvaIistGdEl~~G-~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g  102 (185)
T 3rfq_A           30 VGRALVVVVDDRTAHG-D-EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVT  102 (185)
T ss_dssp             CEEEEEEEECHHHHTT-C-CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred             CCEEEEEEECcccCCC-C-cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence            5789999887653211 2 77888999999999999887666554432110     112 579999999996543

>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}

Probab=92.49  E-value=0.055  Score=37.72  Aligned_cols=72  Identities=11%  Similarity=0.042  Sum_probs=45.1

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCCCCCC
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCNDAHGN   74 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~~~~~   74 (126)
                      +++|++||-+++.--. -+.+++...++.++|++.|.++..+.+..++....     ..++++|.||.+||-+...+|
T Consensus         2 ~~~~v~IistGdEll~-G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~D   78 (172)
T 3kbq_A            2 NAKNASVITVGNEILK-GRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDD   78 (172)
T ss_dssp             --CEEEEEEECHHHHT-TSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTTC
T ss_pred             CCCEEEEEEEcccccC-CcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCccc
Confidence            3579999988764211 11245667789999999999887766554431110     012469999999996554444

>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*

Probab=92.22  E-value=0.31  Score=36.44  Aligned_cols=71  Identities=17%  Similarity=0.283  Sum_probs=45.7

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      |||+|+-.....          ...+.++|++.|.++.+..   ..   .+.+++.|.+|+.||-          ..+..
T Consensus        30 mki~iv~~~~~~----------~~~l~~~L~~~g~~v~~~~---~~---~~~~~~~DlvIvlGGD----------GT~L~   83 (278)
T 1z0s_A           30 MRAAVVYKTDGH----------VKRIEEALKRLEVEVELFN---QP---SEELENFDFIVSVGGD----------GTILR   83 (278)
T ss_dssp             CEEEEEESSSTT----------HHHHHHHHHHTTCEEEEES---SC---CGGGGGSSEEEEEECH----------HHHHH
T ss_pred             eEEEEEeCCcHH----------HHHHHHHHHHCCCEEEEcc---cc---ccccCCCCEEEEECCC----------HHHHH
Confidence            589998775543          2347788989998776532   11   1134689999999992          22333


Q ss_pred             HHHHHHhcCCcEEEEchH
Q 033165           84 LLKQLDSLRKKVLGICFG  101 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G  101 (126)
                      ..+.+... +|++||=.|
T Consensus        84 aa~~~~~~-~PilGIN~G  100 (278)
T 1z0s_A           84 ILQKLKRC-PPIFGINTG  100 (278)
T ss_dssp             HHTTCSSC-CCEEEEECS
T ss_pred             HHHHhCCC-CcEEEECCC
Confidence            34443334 999999876

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=92.16  E-value=0.7  Score=30.11  Aligned_cols=95  Identities=14%  Similarity=0.047  Sum_probs=51.3

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC------CCCCCCCCCcCEEEEcCCCCCCCCC--
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE------FPDDDDFGSYDGYVITGSCNDAHGN--   74 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~------~p~~~~~~~~d~iii~G~~~~~~~~--   74 (126)
                      .++|+|+-.....       +.+.+.+.+.|.+.|+++--+++..++      +|+.+++.+.|.++|.=.+..+.+-  
T Consensus         4 p~siAVVGaS~~~-------~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~p~~~v~~~v~   76 (122)
T 3ff4_A            4 MKKTLILGATPET-------NRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYINPQNQLSEYN   76 (122)
T ss_dssp             CCCEEEETCCSCT-------TSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSCHHHHGGGHH
T ss_pred             CCEEEEEccCCCC-------CCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEeCHHHHHHHHH
Confidence            4689999665543       467777888888888866555554221      3444444347766664221100000  


Q ss_pred             --------chHHH---HHHHHHHHHHhcCCcEEEEchHHHH
Q 033165           75 --------DVWIC---KLIALLKQLDSLRKKVLGICFGHQV  104 (126)
Q Consensus        75 --------~~~~~---~~~~~i~~~~~~~~PvlGIC~G~Q~  104 (126)
                              .-|+.   ...++.+.+.+.++.++|=|+|.++
T Consensus        77 e~~~~g~k~v~~~~G~~~~e~~~~a~~~Girvv~nC~gv~l  117 (122)
T 3ff4_A           77 YILSLKPKRVIFNPGTENEELEEILSENGIEPVIGCTLVML  117 (122)
T ss_dssp             HHHHHCCSEEEECTTCCCHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             HHHhcCCCEEEECCCCChHHHHHHHHHcCCeEECCcCeEEe
Confidence                    00110   0123344444567888888888764

>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}

Probab=92.11  E-value=0.072  Score=39.43  Aligned_cols=84  Identities=18%  Similarity=0.128  Sum_probs=48.8

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-----CCC---CCCCCCcCEEEEcCCCCCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-----FPD---DDDFGSYDGYVITGSCNDAHGN   74 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-----~p~---~~~~~~~d~iii~G~~~~~~~~   74 (126)
                      |+|++|+.+.... ..    ......+.++|++.|.++.+..-....     .+.   ....+++|.||+.||-      
T Consensus         5 mkki~ii~np~~~-~~----~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGD------   73 (292)
T 2an1_A            5 FKCIGIVGHPRHP-TA----LTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGD------   73 (292)
T ss_dssp             CCEEEEECC------------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCH------
T ss_pred             CcEEEEEEcCCCH-HH----HHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCc------
Confidence            4789999775432 11    234556778888899887665321100     000   0011368999999992      


Q ss_pred             chHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165           75 DVWICKLIALLKQLDSLRKKVLGICFG  101 (126)
Q Consensus        75 ~~~~~~~~~~i~~~~~~~~PvlGIC~G  101 (126)
                          ..+.+.++.+.+.++|++||=.|
T Consensus        74 ----GT~l~a~~~~~~~~~P~lGI~~G   96 (292)
T 2an1_A           74 ----GNMLGAARTLARYDINVIGINRG   96 (292)
T ss_dssp             ----HHHHHHHHHHTTSSCEEEEBCSS
T ss_pred             ----HHHHHHHHHhhcCCCCEEEEECC
Confidence                33555566665668999999544

>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1

Probab=92.01  E-value=0.09  Score=36.15  Aligned_cols=69  Identities=7%  Similarity=0.145  Sum_probs=46.4

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCC--CcCEEEEcCCCCCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFG--SYDGYVITGSCNDAHGN   74 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~--~~d~iii~G~~~~~~~~   74 (126)
                      ++|++||-++..-.   +.+++...++.++|++.|.++..+.+..++....     +.++  ++|.||.+||-+...+|
T Consensus        13 ~~rv~Ii~tGdElg---~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D   88 (169)
T 1y5e_A           13 EVRCKIVTISDTRT---EETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRD   88 (169)
T ss_dssp             CCEEEEEEECSSCC---TTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSSTTC
T ss_pred             CCEEEEEEEcCccC---eeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCC
Confidence            57999999988752   3456677789999999999887665543331110     0124  79999999996544333

>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D

Probab=91.99  E-value=0.24  Score=31.54  Aligned_cols=57  Identities=9%  Similarity=-0.094  Sum_probs=36.1

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT   65 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~   65 (126)
                      |.|+||+++-...-....      ....+.+++++.|.++++......+...  .+.+||.++++
T Consensus         1 M~mkkIll~Cg~G~sTS~------l~~k~~~~~~~~gi~~~i~a~~~~~~~~--~~~~~Dvil~~   57 (106)
T 1e2b_A            1 MEKKHIYLFSSAGMSTSL------LVSKMRAQAEKYEVPVIIEAFPETLAGE--KGQNADVVLLG   57 (106)
T ss_dssp             CCCEEEEEECSSSTTTHH------HHHHHHHHHHHSCCSEEEEEECSSSTTH--HHHHCSEEEEC
T ss_pred             CCCcEEEEECCCchhHHH------HHHHHHHHHHHCCCCeEEEEecHHHHHh--hccCCCEEEEc
Confidence            788898877655544322      2335778888899988877655443322  34678865544

>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6

Probab=91.94  E-value=0.19  Score=36.87  Aligned_cols=106  Identities=15%  Similarity=0.024  Sum_probs=63.0

Q ss_pred             CCeEEEEEcCCCch----HHHHh-hCCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCCCCch
Q 033165            3 GKKFAVLLCAEDSE----YVKKK-YGGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHGNDV   76 (126)
Q Consensus         3 ~~ki~Il~~~~~~~----~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~~~~~   76 (126)
                      .+|++|..- ...+    .++.- .......+.++|++.++++++....+.+ ...++.+++||.||+.|....  +  .
T Consensus         7 ~~~vlv~~~-~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~--~--~   81 (252)
T 1t0b_A            7 PIRVVVWNE-FRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAH--D--E   81 (252)
T ss_dssp             CCEEEEEEC-CCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCG--G--G
T ss_pred             CcEEEEECC-ccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCC--C--c
Confidence            468888852 2211    11111 1234567788898899999887643221 122234789999999653211  1  1


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEchHH--HHHHHHhCCcc
Q 033165           77 WICKLIALLKQLDSLRKKVLGICFGH--QVRAITVFSSH  113 (126)
Q Consensus        77 ~~~~~~~~i~~~~~~~~PvlGIC~G~--Q~la~~~Gg~v  113 (126)
                      +.....+.+++.++++..++|+=.|+  +-....+|+..
T Consensus        82 l~~~~~~al~~~V~~GgG~vgiH~a~~~~~y~~llGg~f  120 (252)
T 1t0b_A           82 VKDEVVERVHRRVLEGMGLIVLHSGHFSKIFKKLMGTTC  120 (252)
T ss_dssp             SCHHHHHHHHHHHHTTCEEEEEGGGGGSHHHHHHHCSCC
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEcccCCcHHHHhhhCCcc
Confidence            22345566777788999999995553  44556677653

>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8

Probab=91.54  E-value=0.5  Score=32.35  Aligned_cols=56  Identities=20%  Similarity=0.163  Sum_probs=34.5

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCCCCCCCCcCEEEEcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPDDDDFGSYDGYVITG   66 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G   66 (126)
                      |+||+|+..... .+.+.    ....+.+.+++ .|.+++++++.+.+   .+++.++|+||+.-
T Consensus         4 M~kiliiy~S~~-GnT~~----~a~~i~~~l~~~~g~~v~~~~l~~~~---~~~l~~aD~ii~gs   60 (188)
T 2ark_A            4 MGKVLVIYDTRT-GNTKK----MAELVAEGARSLEGTEVRLKHVDEAT---KEDVLWADGLAVGS   60 (188)
T ss_dssp             CEEEEEEECCSS-SHHHH----HHHHHHHHHHTSTTEEEEEEETTTCC---HHHHHHCSEEEEEE
T ss_pred             CCEEEEEEECCC-cHHHH----HHHHHHHHHhhcCCCeEEEEEhhhCC---HHHHHhCCEEEEEe
Confidence            579999987643 22211    23344555566 78888888875321   12467899988853

>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B

Probab=91.51  E-value=0.11  Score=35.96  Aligned_cols=70  Identities=11%  Similarity=-0.003  Sum_probs=46.4

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCC--CcCEEEEcCCCCCCCCC
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFG--SYDGYVITGSCNDAHGN   74 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~--~~d~iii~G~~~~~~~~   74 (126)
                      .++|++||-+++...   ..+++...++.++|++.|.++..+.+..++....     +.++  ++|.||.+||-+...+|
T Consensus         9 ~~~~v~Ii~tGdE~g---~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~~D   85 (172)
T 1mkz_A            9 IPTRIAILTVSNRRG---EEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGD   85 (172)
T ss_dssp             CCCEEEEEEECSSCC---GGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTC
T ss_pred             CCCEEEEEEEeCCCC---cccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCC
Confidence            357999999988742   2356677789999999999887665543331110     0112  49999999996544444

>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}

Probab=90.88  E-value=0.48  Score=35.31  Aligned_cols=42  Identities=14%  Similarity=0.222  Sum_probs=28.9

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHH----HHHHhhCCCeEEEEEccCCC
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVF----VRMLAEEGETWDVFHVARGE   49 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~----~~~l~~~g~~~~~~~~~~~~   49 (126)
                      |.+|||+||...+..       +||+..+    .+.+++.|.+++++++++..
T Consensus        20 m~~MKiLII~aHP~~-------~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~   65 (280)
T 4gi5_A           20 FQSMKVLLIYAHPEP-------RSLNGALKNFAIRHLQQAGHEVQVSDLYAMR   65 (280)
T ss_dssp             --CCEEEEEECCSCT-------TSHHHHHHHHHHHHHHHTTCEEEEEETTTTT
T ss_pred             hhCCeEEEEEeCCCC-------ccHHHHHHHHHHHHHHHCCCeEEEEEccccC
Confidence            678999999987753       2454443    45566789999999987543

>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*

Probab=90.75  E-value=0.36  Score=33.52  Aligned_cols=40  Identities=10%  Similarity=0.027  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR   47 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   47 (126)
                      |+||+|+...+.. ..+.    ....+.+.+++.|.+++++++.+
T Consensus         6 mmkilii~~S~~g-~T~~----la~~i~~~l~~~g~~v~~~~l~~   45 (211)
T 1ydg_A            6 PVKLAIVFYSSTG-TGYA----MAQEAAEAGRAAGAEVRLLKVRE   45 (211)
T ss_dssp             CCEEEEEECCSSS-HHHH----HHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCeEEEEEECCCC-hHHH----HHHHHHHHHhcCCCEEEEEeccc
Confidence            6899999887632 2111    22334455566788999998764

>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*

Probab=90.59  E-value=0.66  Score=31.59  Aligned_cols=57  Identities=16%  Similarity=0.209  Sum_probs=34.2

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCC-----------------CCCCCCCcCEEEE
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFP-----------------DDDDFGSYDGYVI   64 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p-----------------~~~~~~~~d~iii   64 (126)
                      |+||+|+..... ...+.    ....+.+.+++ .|.+++++++.+. .+                 ..+.+.++|+||+
T Consensus         1 Mmkilii~~S~~-g~t~~----la~~i~~~l~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~   74 (198)
T 3b6i_A            1 MAKVLVLYYSMY-GHIET----MARAVAEGASKVDGAEVVVKRVPET-MPPQLFEKAGGKTQTAPVATPQELADYDAIIF   74 (198)
T ss_dssp             -CEEEEEECCSS-SHHHH----HHHHHHHHHHTSTTCEEEEEECCCC-SCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEE
T ss_pred             CCeEEEEEeCCC-cHHHH----HHHHHHHHHhhcCCCEEEEEEcccc-CchhhhhhcccccccCchhhHHHHHHCCEEEE
Confidence            469999988743 22111    22334455566 7889999987642 10                 0235678999888


Q ss_pred             c
Q 033165           65 T   65 (126)
Q Consensus        65 ~   65 (126)
                      .
T Consensus        75 g   75 (198)
T 3b6i_A           75 G   75 (198)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*

Probab=90.56  E-value=1.5  Score=29.71  Aligned_cols=43  Identities=19%  Similarity=0.089  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHH----HHhhCC--CeEEEEEccCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVR----MLAEEG--ETWDVFHVARGEFP   51 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~----~l~~~g--~~~~~~~~~~~~~p   51 (126)
                      |+||+||...+..+      ++.+..+.+    .+++.|  .+++++++.+..+|
T Consensus         1 Mmkilii~~S~~~~------~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p   49 (201)
T 1t5b_A            1 MSKVLVLKSSILAG------YSQSGQLTDYFIEQWREKHVADEITVRDLAANPVP   49 (201)
T ss_dssp             CCEEEEEECCSSGG------GCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCC
T ss_pred             CCeEEEEEeCCCCC------CChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCC
Confidence            47999999887631      134444443    444444  78999988754443

>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1

Probab=90.43  E-value=0.099  Score=35.88  Aligned_cols=72  Identities=10%  Similarity=0.014  Sum_probs=42.8

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHH----HhhCCCeEEEEEccCCCCCCC-----CCCC-CcCEEEEcCCCCCC
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRM----LAEEGETWDVFHVARGEFPDD-----DDFG-SYDGYVITGSCNDA   71 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~----l~~~g~~~~~~~~~~~~~p~~-----~~~~-~~d~iii~G~~~~~   71 (126)
                      .++|++||-+++.... -+-+++...++.++    |++.|.++..+.+..++....     +-++ ++|.||.+||-...
T Consensus         4 m~~~v~Ii~~GdEl~~-G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g~~   82 (167)
T 2g2c_A            4 MHIKSAIIVVSDRIST-GTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTGIR   82 (167)
T ss_dssp             CEEEEEEEEECHHHHH-TSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred             CccEEEEEEECCcccC-CceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence            3469999988765321 12256778889999    988898876655543331110     0122 49999999996544


Q ss_pred             CCC
Q 033165           72 HGN   74 (126)
Q Consensus        72 ~~~   74 (126)
                      .+|
T Consensus        83 ~~D   85 (167)
T 2g2c_A           83 AKN   85 (167)
T ss_dssp             TTC
T ss_pred             CCc
Confidence            343

>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*

Probab=90.38  E-value=0.12  Score=35.96  Aligned_cols=56  Identities=13%  Similarity=0.068  Sum_probs=33.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHH----HH-HhhCCCeEEEEEccCCCC---------CC-----CCCCCCcCEEE
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFV----RM-LAEEGETWDVFHVARGEF---------PD-----DDDFGSYDGYV   63 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~----~~-l~~~g~~~~~~~~~~~~~---------p~-----~~~~~~~d~ii   63 (126)
                      |+||+|+......       ++++..+.    +. +++.|.+++++++.+..+         +.     .+.+.++|+||
T Consensus         2 Mmkilii~gS~r~-------~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii   74 (197)
T 2vzf_A            2 TYSIVAISGSPSR-------NSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLI   74 (197)
T ss_dssp             CEEEEEEECCSST-------TCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEE
T ss_pred             CceEEEEECCCCC-------CChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEE
Confidence            5799999876532       13344444    44 555688899988754211         00     01356789998


Q ss_pred             Ec
Q 033165           64 IT   65 (126)
Q Consensus        64 i~   65 (126)
                      +.
T Consensus        75 ~~   76 (197)
T 2vzf_A           75 VA   76 (197)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}

Probab=89.86  E-value=0.4  Score=32.87  Aligned_cols=72  Identities=13%  Similarity=0.052  Sum_probs=44.5

Q ss_pred             CCeEEEEEcCCCchHHHHh----hCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-------CCCCCcCEEEEcCCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKK----YGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-------DDFGSYDGYVITGSCNDA   71 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-------~~~~~~d~iii~G~~~~~   71 (126)
                      ++|++||-.++....-...    .|.-..++.++|++.|+++..+.+..|+....       ....++|.||.+||-+..
T Consensus        15 ~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~   94 (178)
T 3iwt_A           15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYS   94 (178)
T ss_dssp             CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSS
T ss_pred             CCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcccC
Confidence            4689999776532111111    24456689999999999987666554431100       123578999999997654


Q ss_pred             CCC
Q 033165           72 HGN   74 (126)
Q Consensus        72 ~~~   74 (126)
                      .++
T Consensus        95 ~~D   97 (178)
T 3iwt_A           95 PTD   97 (178)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            444

>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}

Probab=89.76  E-value=1.1  Score=30.04  Aligned_cols=14  Identities=21%  Similarity=0.252  Sum_probs=11.8

Q ss_pred             CCCCeEEEEEcCCC
Q 033165            1 MGGKKFAVLLCAED   14 (126)
Q Consensus         1 M~~~ki~Il~~~~~   14 (126)
                      |.|+|++|+.....
T Consensus         2 M~~~kilIvY~S~t   15 (162)
T 3klb_A            2 MNDRKILVAYFSCS   15 (162)
T ss_dssp             GGGSCEEEEECCSS
T ss_pred             CCCCCEEEEEECCC
Confidence            78899999998665

>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A

Probab=89.14  E-value=0.1  Score=35.71  Aligned_cols=71  Identities=11%  Similarity=-0.020  Sum_probs=45.2

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCC--CcCEEEEcCCCCCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFG--SYDGYVITGSCNDAHGN   74 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~--~~d~iii~G~~~~~~~~   74 (126)
                      |+|++||-++..-. .-+-+++...++.++|++.|.++..+.+..++....     +.++  ++|.||.+||.+...+|
T Consensus         1 ~~~v~Ii~tGdEl~-~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D   78 (164)
T 2is8_A            1 MFRVGILTVSDKGF-RGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRD   78 (164)
T ss_dssp             CEEEEEEEECHHHH-HTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTC
T ss_pred             CcEEEEEEEcCccc-CCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCC
Confidence            47899998876521 112356778889999999998876665543331110     0123  69999999996544333

>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}

Probab=89.09  E-value=0.65  Score=33.79  Aligned_cols=58  Identities=17%  Similarity=0.151  Sum_probs=36.5

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHH----HHhhCCCeEEEEEccCCCCCCC------------CCCCCcCEEEE
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVR----MLAEEGETWDVFHVARGEFPDD------------DDFGSYDGYVI   64 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~----~l~~~g~~~~~~~~~~~~~p~~------------~~~~~~d~iii   64 (126)
                      |.++||++|...+..       ++++..+.+    .+++.|.+++++++.+..++..            +.+..+|+||+
T Consensus        32 ~~~mkIliI~GS~r~-------~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~  104 (247)
T 2q62_A           32 THRPRILILYGSLRT-------VSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVW  104 (247)
T ss_dssp             CSCCEEEEEECCCCS-------SCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEE
T ss_pred             CCCCeEEEEEccCCC-------CCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEE
Confidence            457899999887753       245554444    4455688999988764322211            12346899888


Q ss_pred             c
Q 033165           65 T   65 (126)
Q Consensus        65 ~   65 (126)
                      .
T Consensus       105 ~  105 (247)
T 2q62_A          105 V  105 (247)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*

Probab=89.06  E-value=0.5  Score=39.67  Aligned_cols=108  Identities=15%  Similarity=0.105  Sum_probs=69.4

Q ss_pred             CeEEEEEcCCCchHHH-----Hh--hC---CHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCC
Q 033165            4 KKFAVLLCAEDSEYVK-----KK--YG---GYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHG   73 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~-----~~--~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~   73 (126)
                      .||+||.+-..-+.-.     ..  |+   +|.+ +.+.|...+++++.++...  ....+.+++||.||..|...+...
T Consensus       439 ~kVAVLnsWGklRSW~~~~vaHak~~kq~ysy~G-ilEALsg~~~dV~FIsfdD--I~e~e~L~d~DVIIn~G~A~TalS  515 (759)
T 2zuv_A          439 LNVAILNSWGKMRSWMAFTVAHALPNKQTYSYYG-ILESLSGMRVNVRFISFDD--VLAHGIDSDIDVIINGGPVDTAFT  515 (759)
T ss_dssp             SEEEEEESSGGGGTTTTTCSSTTCCCTTTHHHHH-HHHHHHTSSSEEEEEEHHH--HHHHCCCTTCCEEEEEECTTSTTT
T ss_pred             ceEEEEecCCCCcccccccccccccccccccHHH-HHHHHhcCCCceEEecHHH--hccccccccCCEEEecCcchhccc
Confidence            7999999877654100     00  11   3444 5677888899999887542  211135789999999985544433


Q ss_pred             C-chHH-HHHHHHHHHHHhcCCcEEEEc--h-----H----HHHHHHHhCCcccc
Q 033165           74 N-DVWI-CKLIALLKQLDSLRKKVLGIC--F-----G----HQVRAITVFSSHIN  115 (126)
Q Consensus        74 ~-~~~~-~~~~~~i~~~~~~~~PvlGIC--~-----G----~Q~la~~~Gg~v~~  115 (126)
                      . ..|. ++..+.|++.+.+|--++||.  .     |    +| |+..||-+...
T Consensus       516 gg~~W~~p~~~~aLR~fV~~GGgLIgVGepSsfqg~g~gryFq-LADVLGVd~e~  569 (759)
T 2zuv_A          516 GGDVWTNPKLVETVRAWVRGGGAFVGVGEPSSAPRFQTGRFFQ-LADVIGVDEER  569 (759)
T ss_dssp             CGGGGGCHHHHHHHHHHHHTTCEEEEEESTTEEEEEETTEEET-THHHHSEEECC
T ss_pred             CccccCCHHHHHHHHHHHHcCCcEEEeCCccccccccCccccc-HHhhcCccccc
Confidence            3 2453 457788999998888888775  1     1    24 77777776554

>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A

Probab=88.38  E-value=2.7  Score=27.29  Aligned_cols=57  Identities=12%  Similarity=0.047  Sum_probs=33.8

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCN   69 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~   69 (126)
                      |+|++|+.....- +++    .+...+.+.++..+.++++++..     ..+++.++|.||+.-+..
T Consensus         1 M~ki~I~Y~S~tG-nT~----~~A~~ia~~l~~~g~~v~~~~~~-----~~~~l~~~d~vi~g~pt~   57 (147)
T 2hna_A            1 MADITLISGSTLG-GAE----YVAEHLAEKLEEAGFTTETLHGP-----LLEDLPASGIWLVISSTH   57 (147)
T ss_dssp             CCSEEEECCTTSC-CCH----HHHHHHHHHHHHTTCCEEEECCT-----TSCSSCSEEEEEEECCTT
T ss_pred             CCeEEEEEECCch-HHH----HHHHHHHHHHHHCCCceEEecCC-----CHHHcccCCeEEEEECcc
Confidence            4688888654432 111    13445667777778887766532     223577899888865433

>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...

Probab=88.11  E-value=1.3  Score=28.67  Aligned_cols=55  Identities=16%  Similarity=0.090  Sum_probs=34.9

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCC-cCEEEEcC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGS-YDGYVITG   66 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~-~d~iii~G   66 (126)
                      ||++|+.....- +.+    .....+.+.+++.|.+++++++.+.+   .+++.+ +|.||+.-
T Consensus         1 mki~iiy~S~~G-nt~----~~a~~i~~~l~~~g~~v~~~~~~~~~---~~~l~~~~d~ii~~~   56 (147)
T 1f4p_A            1 PKALIVYGSTTG-NTE----YTAETIARELADAGYEVDSRDAASVE---AGGLFEGFDLVLLGC   56 (147)
T ss_dssp             CEEEEEEECSSS-HHH----HHHHHHHHHHHHHTCEEEEEEGGGCC---STTTTTTCSEEEEEE
T ss_pred             CeEEEEEECCcC-HHH----HHHHHHHHHHHhcCCeeEEEehhhCC---HHHhcCcCCEEEEEe
Confidence            488888766542 222    13444555666678889988876432   235778 99988853

>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*

Probab=87.06  E-value=0.69  Score=31.69  Aligned_cols=54  Identities=13%  Similarity=0.166  Sum_probs=33.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh---CCCeEEEEEccCCCCCCC-----------------CCCCCcCEE
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE---EGETWDVFHVARGEFPDD-----------------DDFGSYDGY   62 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~~p~~-----------------~~~~~~d~i   62 (126)
                      +|||+|+...+..       ++.+..+.+.+.+   .|.+++++++.+  +|..                 +.+.++|+|
T Consensus         6 ~Mkilii~gS~r~-------~g~t~~la~~i~~~l~~g~~v~~~dl~~--~p~~~~~~~~~~~~~~~~~~~~~l~~aD~i   76 (193)
T 1rtt_A            6 DIKVLGISGSLRS-------GSYNSAALQEAIGLVPPGMSIELADISG--IPLYNEDVYALGFPPAVERFREQIRAADAL   76 (193)
T ss_dssp             -CEEEEEESCCST-------TCHHHHHHHHHHTTCCTTCEEEECCCTT--CCCCCHHHHTTCCCHHHHHHHHHHHHCSEE
T ss_pred             CceEEEEECCCCC-------CChHHHHHHHHHHhccCCCeEEEEeHHH--CCCCCccccccCCCHHHHHHHHHHHhCCEE
Confidence            4699999887652       2456667666533   367788877653  2310                 134578988


Q ss_pred             EEc
Q 033165           63 VIT   65 (126)
Q Consensus        63 ii~   65 (126)
                      |+.
T Consensus        77 i~~   79 (193)
T 1rtt_A           77 LFA   79 (193)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            885

>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}

Probab=86.99  E-value=0.78  Score=33.89  Aligned_cols=84  Identities=11%  Similarity=0.082  Sum_probs=48.2

Q ss_pred             CCCCeEEEEEcCCCc-hHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC-C---CCcCEEEEcCCCCCC
Q 033165            1 MGGKKFAVLLCAEDS-EYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD-F---GSYDGYVITGSCNDA   71 (126)
Q Consensus         1 M~~~ki~Il~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~-~---~~~d~iii~G~~~~~   71 (126)
                      |+..+|+++..+... +..    .....-+.+.+++.|.++.++....+. ..    .+. +   .++||||+.+..   
T Consensus         1 ~~~~~Ig~i~p~~~~~~f~----~~~~~g~~~~a~~~g~~~~~~~~~~~~-~~~~~~i~~~i~~~~~vDgiIi~~~~---   72 (350)
T 3h75_A            1 MSLTSVVFLNPGNSTETFW----VSYSQFMQAAARDLGLDLRILYAERDP-QNTLQQARELFQGRDKPDYLMLVNEQ---   72 (350)
T ss_dssp             --CCEEEEEECSCTTCHHH----HHHHHHHHHHHHHHTCEEEEEECTTCH-HHHHHHHHHHHHSSSCCSEEEEECCS---
T ss_pred             CCCCEEEEECCCCCCChHH----HHHHHHHHHHHHHcCCeEEEEECCCCH-HHHHHHHHHHHhcCCCCCEEEEeCch---
Confidence            788999999987765 321    123334556667779988887543210 00    000 1   389999997521   


Q ss_pred             CCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165           72 HGNDVWICKLIALLKQLDSLRKKVLGIC   99 (126)
Q Consensus        72 ~~~~~~~~~~~~~i~~~~~~~~PvlGIC   99 (126)
                       .      ...+.++.+.+.++|++-+.
T Consensus        73 -~------~~~~~~~~~~~~giPvV~~~   93 (350)
T 3h75_A           73 -Y------VAPQILRLSQGSGIKLFIVN   93 (350)
T ss_dssp             -S------HHHHHHHHHTTSCCEEEEEE
T ss_pred             -h------hHHHHHHHHHhCCCcEEEEc
Confidence             1      12234556666789987664

>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*

Probab=86.84  E-value=1.2  Score=31.09  Aligned_cols=105  Identities=18%  Similarity=0.153  Sum_probs=56.2

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh---CCCeEE-EEEccCCCCCCC-----------------CCCCCc
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE---EGETWD-VFHVARGEFPDD-----------------DDFGSY   59 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~-~~~~~~~~~p~~-----------------~~~~~~   59 (126)
                      |++|||++|......       ++++..+.+++.+   .|.+++ ++++.+  +|..                 +.+..+
T Consensus         4 M~~mkIl~I~GS~r~-------~s~t~~la~~~~~~~~~g~~v~~~idL~~--lP~~~~~~~~~~~~~~~~~~~~~i~~A   74 (199)
T 4hs4_A            4 TSPLHFVTLLGSLRK-------ASFNAAVARALPEIAPEGIAITPLGSIGT--FPHYSQDVQEEGFPAPVLTMAQQIATA   74 (199)
T ss_dssp             -CCEEEEEEECCCST-------TCHHHHHHHHHHHHCCTTEEEEECCCGGG--SCCCCHHHHHHCCCHHHHHHHHHHHHS
T ss_pred             CCCCEEEEEEcCCCC-------CChHHHHHHHHHHHccCCCEEEEEEehhh--cCCCCccccccCCCHHHHHHHHHHHhC
Confidence            455799999887653       4677777766643   356677 666542  3321                 124688


Q ss_pred             CEEEEcCCCCCCCCCchHHHHHHHHHHH----HHhcCCcEEEEch--H----------HHHHHHHhCCccccC
Q 033165           60 DGYVITGSCNDAHGNDVWICKLIALLKQ----LDSLRKKVLGICF--G----------HQVRAITVFSSHINA  116 (126)
Q Consensus        60 d~iii~G~~~~~~~~~~~~~~~~~~i~~----~~~~~~PvlGIC~--G----------~Q~la~~~Gg~v~~~  116 (126)
                      |+||+.---++- .-..-+..+.+++..    .+ .+||++-+..  |          +.-+...+|..+...
T Consensus        75 D~iVi~tP~Y~~-s~p~~LK~~iD~~~~~~~~~l-~gK~v~~v~tsgg~~g~~~a~~~Lr~il~~lg~~~v~~  145 (199)
T 4hs4_A           75 DAVVIVTPEYNY-SVPGVLKNAIDWLSRVSPQPL-AGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLNR  145 (199)
T ss_dssp             SEEEEEECCBTT-BCCHHHHHHHHHHTTSSSCTT-TTCEEEEEEECSSSSCSHHHHHHHHHHHHHTTCEECCS
T ss_pred             CEEEEEcCccCC-CcCHHHHHHHHHhcccCCccc-CCCEEEEEEeCCCCcccHHHHHHHHHHHHHcCCEEcCC
Confidence            999886322211 111233444444432    11 4788766654  3          122234578877653

>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6

Probab=86.83  E-value=1.3  Score=29.73  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR   47 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~   47 (126)
                      ||||+|+...+..       ++.+..+.+.+.+ +.+++.+++..
T Consensus         3 mMkilii~~S~r~-------~g~t~~la~~~~~-~~~~~~~~l~~   39 (184)
T 1rli_A            3 AMKIAVINGGTRS-------GGNTDVLAEKAVQ-GFDAEHIYLQK   39 (184)
T ss_dssp             --CEEEEESSCSS-------CCHHHHHHHHHHT-TTCCEEEEC--
T ss_pred             CcEEEEEECCCCC-------CccHHHHHHHHHc-CCeEEEEEcCC
Confidence            5699999887652       2566677777754 45666666543

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=86.80  E-value=1  Score=32.32  Aligned_cols=85  Identities=13%  Similarity=0.107  Sum_probs=46.6

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-----CCC--CCCcCEEEEcCCCCCCCC
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-----DDD--FGSYDGYVITGSCNDAHG   73 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-----~~~--~~~~d~iii~G~~~~~~~   73 (126)
                      |.+.+|+++..+..++...    ....-+.+.+++.|.++.++......-+.     .+.  -.++||||+.+.....  
T Consensus         1 ~~~~~Igvi~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~--   74 (297)
T 3rot_A            1 MVRDKYYLITHGSQDPYWT----SLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTA--   74 (297)
T ss_dssp             --CCEEEEECSCCCSHHHH----HHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSST--
T ss_pred             CceEEEEEEecCCCCchHH----HHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH--
Confidence            7788999998877554321    22334556667779888877643100010     001  1579999997663221  


Q ss_pred             CchHHHHHHHHHHHHHhcCCcEEEE
Q 033165           74 NDVWICKLIALLKQLDSLRKKVLGI   98 (126)
Q Consensus        74 ~~~~~~~~~~~i~~~~~~~~PvlGI   98 (126)
                             ....++.+.+.++|++-+
T Consensus        75 -------~~~~~~~~~~~giPvV~~   92 (297)
T 3rot_A           75 -------FSKSLQRANKLNIPVIAV   92 (297)
T ss_dssp             -------THHHHHHHHHHTCCEEEE
T ss_pred             -------HHHHHHHHHHCCCCEEEE
Confidence                   112344455568887654

>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}

Probab=86.75  E-value=3.2  Score=28.10  Aligned_cols=14  Identities=14%  Similarity=0.123  Sum_probs=10.1

Q ss_pred             CCCCeEEEEEcCCC
Q 033165            1 MGGKKFAVLLCAED   14 (126)
Q Consensus         1 M~~~ki~Il~~~~~   14 (126)
                      |++||++|+.....
T Consensus        11 ~~~mkilIvY~S~t   24 (171)
T 4ici_A           11 HSNSKILVAYFSAT   24 (171)
T ss_dssp             --CCCEEEEECCSS
T ss_pred             cCCCCEEEEEECCC
Confidence            56889999988765

>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A

Probab=85.31  E-value=1  Score=30.83  Aligned_cols=92  Identities=18%  Similarity=0.179  Sum_probs=49.6

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC---eEEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCC-C
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE---TWDVFHVA-RGEFPDD----DDFGSYDGYVITGSCND-A   71 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~-~   71 (126)
                      |+..||+|+..+....-...-    ..-..+.|.+.|.   +++++++. .-|+|..    ..-.+||+||-.|---. .
T Consensus         8 ~~~~ri~IV~arfn~~I~~~L----l~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~   83 (158)
T 1di0_A            8 KTSFKIAFIQARWHADIVDEA----RKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGG   83 (158)
T ss_dssp             -CCEEEEEEEECTTHHHHHHH----HHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEECCCCS
T ss_pred             CCCCEEEEEEEeCcHHHHHHH----HHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCC
Confidence            445799999998876432221    1123344555553   46777653 2233321    01257999999986421 1


Q ss_pred             CCCchHHHH--HHHHHHHHHhcCCcEE
Q 033165           72 HGNDVWICK--LIALLKQLDSLRKKVL   96 (126)
Q Consensus        72 ~~~~~~~~~--~~~~i~~~~~~~~Pvl   96 (126)
                      ....+++..  ...+.+-.++.++||.
T Consensus        84 T~Hfd~Va~~vs~Gl~~v~L~~~vPV~  110 (158)
T 1di0_A           84 IYDHDFVATAVINGMMQVQLETEVPVL  110 (158)
T ss_dssp             SBCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred             CcHHHHHHHHHHHHHHHHHhhcCCCEE
Confidence            112233332  3455666677899964

>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}

Probab=84.86  E-value=2.1  Score=30.64  Aligned_cols=85  Identities=11%  Similarity=0.051  Sum_probs=45.3

Q ss_pred             CCC-CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC--CCCcCEEEEcCCCCCCCC
Q 033165            1 MGG-KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD--FGSYDGYVITGSCNDAHG   73 (126)
Q Consensus         1 M~~-~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~--~~~~d~iii~G~~~~~~~   73 (126)
                      |++ ++|+++..+...+...    .+..-+.+.+++.|.++.++.....+...    .+.  -.++||||+.+.....  
T Consensus         1 ~s~~~~I~~i~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~--   74 (305)
T 3g1w_A            1 MSLNETYMMITFQSGMDYWK----RCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE--   74 (305)
T ss_dssp             ----CEEEEEESSTTSTHHH----HHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT--
T ss_pred             CCCCceEEEEEccCCChHHH----HHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH--
Confidence            443 6889988877654322    23334556667778888774322211000    000  1479999998763221  


Q ss_pred             CchHHHHHHHHHHHHHhcCCcEEEE
Q 033165           74 NDVWICKLIALLKQLDSLRKKVLGI   98 (126)
Q Consensus        74 ~~~~~~~~~~~i~~~~~~~~PvlGI   98 (126)
                             ..+.++++.+.++|++-+
T Consensus        75 -------~~~~~~~~~~~~iPvV~~   92 (305)
T 3g1w_A           75 -------LTDTINKAVDAGIPIVLF   92 (305)
T ss_dssp             -------THHHHHHHHHTTCCEEEE
T ss_pred             -------HHHHHHHHHHCCCcEEEE
Confidence                   112344555678888654

>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}

Probab=84.48  E-value=1.2  Score=31.06  Aligned_cols=58  Identities=9%  Similarity=0.007  Sum_probs=39.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC-CC------CCCCCcCEEEEc
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP-DD------DDFGSYDGYVIT   65 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p-~~------~~~~~~d~iii~   65 (126)
                      ||||+||...+....     .++...+.+.+++.+.+++++++.+.... .+      +.+..+|+||+.
T Consensus         1 MmkiLiI~gsp~~~~-----s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~   65 (192)
T 3f2v_A            1 MPKTLIILAHPNISQ-----STVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQ   65 (192)
T ss_dssp             -CCEEEEECCTTGGG-----CSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEE
T ss_pred             CCEEEEEEeCCCccH-----HHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEE
Confidence            579999998876531     25777788888888999999988642111 11      135689998885

>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A

Probab=84.41  E-value=0.38  Score=32.84  Aligned_cols=71  Identities=13%  Similarity=-0.006  Sum_probs=42.1

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-----CCeEEEEEccCCCCCCC----CC-C--CCcCEEEEcCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-----GETWDVFHVARGEFPDD----DD-F--GSYDGYVITGSCND   70 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-----g~~~~~~~~~~~~~p~~----~~-~--~~~d~iii~G~~~~   70 (126)
                      ++|++||-++... ..-+.+++...++.+.++..     |.++..+.+..++....    .. +  .++|.||.+||.+.
T Consensus         5 ~~rv~IistGde~-~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~   83 (167)
T 1uuy_A            5 EYKVAILTVSDTV-SAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGF   83 (167)
T ss_dssp             SEEEEEEEECHHH-HTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred             CcEEEEEEECCcc-cCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence            5799999886532 11112345556778888877     88776655443331110    01 1  36999999999654


Q ss_pred             CCCC
Q 033165           71 AHGN   74 (126)
Q Consensus        71 ~~~~   74 (126)
                      ..+|
T Consensus        84 g~~D   87 (167)
T 1uuy_A           84 TPRD   87 (167)
T ss_dssp             STTC
T ss_pred             CCCC
Confidence            4333

>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}

Probab=84.11  E-value=1.8  Score=29.80  Aligned_cols=44  Identities=11%  Similarity=0.071  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHH----HHHhhCC--CeEEEEEcc--CCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFV----RMLAEEG--ETWDVFHVA--RGEFP   51 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~----~~l~~~g--~~~~~~~~~--~~~~p   51 (126)
                      |+||+||...+...     .++++..+.    +.+++.+  .+++++++.  +..+|
T Consensus         1 M~kilii~gS~r~~-----~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~   52 (208)
T 2hpv_A            1 MSKLLVVKAHPLTK-----EESRSVRALETFLASYRETNPSDEIEILDVYAPETNMP   52 (208)
T ss_dssp             -CEEEEEECCSSCT-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCC
T ss_pred             CCeEEEEEecCCCC-----CCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCC
Confidence            46999999887630     124454444    4445555  899999987  54443

>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A

Probab=83.20  E-value=1.2  Score=30.69  Aligned_cols=70  Identities=10%  Similarity=-0.085  Sum_probs=42.5

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHh---hCCCeEEEEEccCCCCCCC-----CCCC--CcCEEEEcCCCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLA---EEGETWDVFHVARGEFPDD-----DDFG--SYDGYVITGSCNDAH   72 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~---~~g~~~~~~~~~~~~~p~~-----~~~~--~~d~iii~G~~~~~~   72 (126)
                      ++|++||-++.... .-+.+++...++.++|+   +.|.++ .+.+..++....     +.++  ++|.||.+||-+...
T Consensus         5 ~~rv~IistGdE~~-~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g~   82 (178)
T 2pbq_A            5 KAVIGVVTISDRAS-KGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPAP   82 (178)
T ss_dssp             CCEEEEEEECHHHH-HTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred             CCEEEEEEeCCcCC-CCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence            46999998876421 11224566778888887   889988 444433321100     0122  699999999965443


Q ss_pred             CC
Q 033165           73 GN   74 (126)
Q Consensus        73 ~~   74 (126)
                      +|
T Consensus        83 ~D   84 (178)
T 2pbq_A           83 RD   84 (178)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A

Probab=83.13  E-value=5.7  Score=28.65  Aligned_cols=91  Identities=16%  Similarity=0.084  Sum_probs=50.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHh---hCCCeEEEEEccCCCCCCCCC-------------------CCCcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLA---EEGETWDVFHVARGEFPDDDD-------------------FGSYD   60 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~---~~g~~~~~~~~~~~~~p~~~~-------------------~~~~d   60 (126)
                      .|||+|++-++...        .++.+.+.++   ..+.++..+.+..+. +..+.                   -.++|
T Consensus         1 ~mrilvINPnts~~--------~T~~i~~~~~~~~~p~~~i~~~t~~~gp-~~i~~~~d~~~a~~~l~~~~~~l~~~g~d   71 (245)
T 3qvl_A            1 SVRIQVINPNTSLA--------MTETIGAAARAVAAPGTEILAVCPRAGV-PSIEGHFDEAIAAVGVLEQIRAGREQGVD   71 (245)
T ss_dssp             CEEEEEECSSCCHH--------HHHHHHHHHHHHCCTTEEEEEECCSSSC-SSCCSHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEEeCCCCHH--------HHHHHHHHHHHhcCCCCEEEEEeCCCCc-hhhcChhHHHHHHHHHHHHHHHHHHCCCC
Confidence            36999998888753        3445555544   346666666654321 11111                   13689


Q ss_pred             EEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165           61 GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI  114 (126)
Q Consensus        61 ~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~  114 (126)
                      ++++.-...+     .    + +.+++.  .++||+||.--.-..+..+|.++.
T Consensus        72 ~iviaCnt~~-----~----l-~~lr~~--~~iPvigi~e~~~~~a~~~~~rig  113 (245)
T 3qvl_A           72 GHVIASFGDP-----G----L-LAAREL--AQGPVIGIAEAAMHMATMVATRFS  113 (245)
T ss_dssp             EEEEC-CCCT-----T----H-HHHHHH--CSSCEEEHHHHHHHHHHHHCSCEE
T ss_pred             EEEEeCCChh-----H----H-HHHHHH--cCCCEECccHHHHHHHHHcCCEEE
Confidence            9999754221     1    1 234443  379999996444334445676554

>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}

Probab=82.82  E-value=4  Score=28.88  Aligned_cols=83  Identities=10%  Similarity=0.035  Sum_probs=46.7

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CCC--CCCcCEEEEcCCCCCCCCCchH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DDD--FGSYDGYVITGSCNDAHGNDVW   77 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~~--~~~~d~iii~G~~~~~~~~~~~   77 (126)
                      ..+|+|+..+...+...    ....-+.+.+++.|.++.++....+.-..   .+.  -..+||||+.+.....      
T Consensus         8 ~~~Ig~i~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~------   77 (293)
T 3l6u_A            8 RNIVGFTIVNDKHEFAQ----RLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVY------   77 (293)
T ss_dssp             -CEEEEEESCSCSHHHH----HHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTT------
T ss_pred             CcEEEEEEecCCcHHHH----HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHH------
Confidence            36899998776654321    23334556677789988887643210000   000  1479999998653211      


Q ss_pred             HHHHHHHHHHHHhcCCcEEEE
Q 033165           78 ICKLIALLKQLDSLRKKVLGI   98 (126)
Q Consensus        78 ~~~~~~~i~~~~~~~~PvlGI   98 (126)
                         ..+.++.+.+.++|++-+
T Consensus        78 ---~~~~~~~~~~~~iPvV~~   95 (293)
T 3l6u_A           78 ---IGSAIEEAKKAGIPVFAI   95 (293)
T ss_dssp             ---THHHHHHHHHTTCCEEEE
T ss_pred             ---HHHHHHHHHHcCCCEEEe
Confidence               112344555668888765

>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}

Probab=82.77  E-value=5.1  Score=26.27  Aligned_cols=29  Identities=17%  Similarity=0.132  Sum_probs=18.1

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHH-hhC-CCeE
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRML-AEE-GETW   40 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l-~~~-g~~~   40 (126)
                      |+|++|+.....         ..+..+.+.+ +.. +.++
T Consensus         3 ~~kilIvY~S~t---------GnT~~iA~~Ia~~l~~~~~   33 (151)
T 3edo_A            3 AKKTLILYYSWS---------GETKKMAEKINSEIKDSEL   33 (151)
T ss_dssp             CCCEEEEECCSS---------SHHHHHHHHHHHHSTTCEE
T ss_pred             CCcEEEEEECCC---------CcHHHHHHHHHHhccCCCE
Confidence            458999988765         2455577777 333 5543

>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*

Probab=82.76  E-value=3.6  Score=28.07  Aligned_cols=101  Identities=20%  Similarity=0.142  Sum_probs=58.2

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc-CCCCCCC----CCC-----CCcCEEEEcCCCCC-CC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA-RGEFPDD----DDF-----GSYDGYVITGSCND-AH   72 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~p~~----~~~-----~~~d~iii~G~~~~-~~   72 (126)
                      .||+|+..+....-...    -..-..+.|.+.|.+++++++. .-|+|..    ..-     .+||+||-.|---. ..
T Consensus        13 ~ri~IV~arfn~~I~~~----Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T   88 (157)
T 2i0f_A           13 PHLLIVEARFYDDLADA----LLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGET   88 (157)
T ss_dssp             CEEEEEEECSSHHHHHH----HHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSS
T ss_pred             cEEEEEEEeCcHHHHHH----HHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCc
Confidence            59999999887643222    1122345666778888888764 1233321    011     57999998875310 11


Q ss_pred             CCchHHHH--HHHHHHHHHhcCCcE-EEE---chHHHHHHHH
Q 033165           73 GNDVWICK--LIALLKQLDSLRKKV-LGI---CFGHQVRAIT  108 (126)
Q Consensus        73 ~~~~~~~~--~~~~i~~~~~~~~Pv-lGI---C~G~Q~la~~  108 (126)
                      ...+++.+  ...+.+-.++.++|| +||   =-=.|.+.++
T Consensus        89 ~Hfd~Va~~v~~gl~~vsl~~~vPV~~GVLT~~~~eQA~~Ra  130 (157)
T 2i0f_A           89 YHFDIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVHA  130 (157)
T ss_dssp             STTHHHHHHHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHh
Confidence            12233333  345566667789995 344   2457888886

>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A

Probab=81.34  E-value=0.43  Score=33.47  Aligned_cols=71  Identities=13%  Similarity=0.070  Sum_probs=43.1

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh---CCCeEEEEEccCCCCCCC----CC-CC--CcCEEEEcCCCCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE---EGETWDVFHVARGEFPDD----DD-FG--SYDGYVITGSCNDAH   72 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~~p~~----~~-~~--~~d~iii~G~~~~~~   72 (126)
                      ++|++||-+++.--. -..+++...++.++|++   .|.++..+.+..++....    .. ++  ++|.||.+||.+...
T Consensus        14 ~~rv~IistGdEl~~-g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg~g~   92 (189)
T 1jlj_A           14 QIRVGVLTVSDSCFR-NLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAP   92 (189)
T ss_dssp             CCEEEEEEECHHHHT-TSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred             CCEEEEEEECCccCC-CcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCCCCC
Confidence            579999988765211 01235566788899987   788876655443331110    01 12  689999999965433


Q ss_pred             CC
Q 033165           73 GN   74 (126)
Q Consensus        73 ~~   74 (126)
                      +|
T Consensus        93 ~D   94 (189)
T 1jlj_A           93 RD   94 (189)
T ss_dssp             TC
T ss_pred             cc
Confidence            33

>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}

Probab=80.99  E-value=8  Score=29.29  Aligned_cols=91  Identities=8%  Similarity=-0.004  Sum_probs=47.8

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGNDVWICKL   81 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~~~~~~~   81 (126)
                      ++|++|+.....- +.+.    ....+.+.+++.+.+++++++.+.+... .+++.++|+||+.-..+.- ...+-+..+
T Consensus       256 ~~kv~iiy~S~~G-nT~~----la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y~~-~~~~~~k~f  329 (414)
T 2q9u_A          256 QKKVTVVLDSMYG-TTHR----MALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFASPTLNN-TMMPSVAAA  329 (414)
T ss_dssp             CSEEEEEECCSSS-HHHH----HHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBTT-BCCHHHHHH
T ss_pred             CCeEEEEEECCCc-hHHH----HHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCccCc-CchHHHHHH
Confidence            5799999876642 2221    2334555566678889888875422110 0135689999887543322 112223333


Q ss_pred             HHHHHHHHh-cCCcEEEEc
Q 033165           82 IALLKQLDS-LRKKVLGIC   99 (126)
Q Consensus        82 ~~~i~~~~~-~~~PvlGIC   99 (126)
                      .+.+....- .++|+.-+|
T Consensus       330 ld~l~~~~~~~~K~~~~~~  348 (414)
T 2q9u_A          330 LNYVRGLTLIKGKPAFAFG  348 (414)
T ss_dssp             HHHHHHHTTTTTSBEEEEE
T ss_pred             HHHHHhhcccCCCEEEEEE
Confidence            333332222 577876544

>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}

Probab=80.77  E-value=12  Score=26.17  Aligned_cols=59  Identities=15%  Similarity=0.017  Sum_probs=34.6

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS   67 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~   67 (126)
                      ..+|+++..+..++..    ..+..-+.+.+++.|.++.++....+. .....+ .+||||+.+.
T Consensus         8 ~~~Igvi~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~-~vdgiI~~~~   66 (277)
T 3cs3_A            8 TNIIGVYLADYGGSFY----GELLEGIKKGLALFDYEMIVCSGKKSH-LFIPEK-MVDGAIILDW   66 (277)
T ss_dssp             CCEEEEEECSSCTTTH----HHHHHHHHHHHHTTTCEEEEEESTTTT-TCCCTT-TCSEEEEECT
T ss_pred             CcEEEEEecCCCChhH----HHHHHHHHHHHHHCCCeEEEEeCCCCH-HHHhhc-cccEEEEecC
Confidence            3578998765443321    123334556667789888877653221 111123 8999999876

>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}

Probab=81.76  E-value=0.32  Score=34.09  Aligned_cols=57  Identities=21%  Similarity=0.296  Sum_probs=32.3

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC---CCeEEEE-EccCC-----C-----CC-----CCCCCCCcCEE
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE---GETWDVF-HVARG-----E-----FP-----DDDDFGSYDGY   62 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~~~~~-~~~~~-----~-----~p-----~~~~~~~~d~i   62 (126)
                      .+|||++|......       ++++..+.+++.+.   |.+++++ ++.+-     +     .|     ..+.+..+|+|
T Consensus         5 ~~mkIliI~gS~r~-------~s~t~~la~~~~~~~~~g~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~i   77 (199)
T 3s2y_A            5 SPLHFVTLLGSLRK-------ASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAV   77 (199)
Confidence            45799999876642       24444455444221   6777777 65420     0     00     01346788998


Q ss_pred             EEc
Q 033165           63 VIT   65 (126)
Q Consensus        63 ii~   65 (126)
                      |+.
T Consensus        78 Ii~   80 (199)
T 3s2y_A           78 VIV   80 (199)
Confidence            885

>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*

Probab=80.48  E-value=1  Score=30.99  Aligned_cols=102  Identities=15%  Similarity=0.111  Sum_probs=56.2

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC-eEEEEEcc-CCCCCCC-CC-CCCcCEEEEcCCCCC-CCCCchH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE-TWDVFHVA-RGEFPDD-DD-FGSYDGYVITGSCND-AHGNDVW   77 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~-~~~~p~~-~~-~~~~d~iii~G~~~~-~~~~~~~   77 (126)
                      ..||+|+..+....-...    -..-..+.|.+.|. +++++++. .-|+|.. .. .+.||+||-.|---. .....++
T Consensus        17 ~~ri~IV~arfn~~I~~~----Ll~gA~~~l~~~G~~~i~v~~VPGafEiP~aak~la~~yDavIaLG~VIrG~T~Hfd~   92 (160)
T 2c92_A           17 GVRLAIVASSWHGKICDA----LLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDY   92 (160)
T ss_dssp             TCCEEEEEECSSHHHHHH----HHHHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHTSCSEEEEEEEEECCSSTHHHH
T ss_pred             CCEEEEEEEeCcHHHHHH----HHHHHHHHHHHcCCCceEEEECCcHHHHHHHHHHHHhcCCEEEEEeeeecCCchHHHH
Confidence            479999999887642222    11223455666776 67777653 2233321 00 246999999886311 1112233


Q ss_pred             HHH--HHHHHHHHHhcCCcEE-EE--ch-HHHHHHHH
Q 033165           78 ICK--LIALLKQLDSLRKKVL-GI--CF-GHQVRAIT  108 (126)
Q Consensus        78 ~~~--~~~~i~~~~~~~~Pvl-GI--C~-G~Q~la~~  108 (126)
                      +..  ...+.+-.++.++||. ||  |- =.|.+.++
T Consensus        93 Va~~vs~Gl~~v~L~~~vPV~~GVLT~~~~eQA~~Ra  129 (160)
T 2c92_A           93 VCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRA  129 (160)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEEEEEESSHHHHHTTB
T ss_pred             HHHHHHHHHHHHHhhcCCCEEEEEcCCCCHHHHHHHh
Confidence            332  3455666677899964 42  43 56766664

>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1

Probab=80.32  E-value=0.22  Score=26.38  Aligned_cols=17  Identities=29%  Similarity=0.489  Sum_probs=13.3

Q ss_pred             cEEEEchHHHHHHHHhC
Q 033165           94 KVLGICFGHQVRAITVF  110 (126)
Q Consensus        94 PvlGIC~G~Q~la~~~G  110 (126)
                      -..|-|||.|++..+-|
T Consensus        31 gtagacfgaqimvaakg   47 (48)
T 1ehs_A           31 GTAGACFGAQIMVAAKG   47 (48)
T ss_dssp             SSCCTTTTTHHHHTTTT
T ss_pred             CccccccchhHhhhccc
Confidence            36788999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d2ghra1	281	c.23.16.8 (A:17-297) Homoserine O-succinyltransfer	4e-04
d1l9xa_	288	c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho	0.001

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

 Score = 36.2 bits (83), Expect = 4e-04
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 28  VFVRMLAEEGETWDVFHVAR--GEFPDDDDFGSYDGYVITGSCNDA--HGNDVWICKLIA 83
             + M +         H+      F D ++   +DG +ITG+  +        +  +L  
Sbjct: 52  HLLHMESHLSRNVAQEHLTSFYKTFRDIENEK-FDGLIITGAPVETLSFEEVDYWEELKR 110

Query: 84  LLKQLDSLRKKVLGICFGHQVRA 106
           +++   +     L IC+G Q   
Sbjct: 111 IMEYSKTNVTSTLHICWGAQAGL 133

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.001
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 9   LLCAEDSEYVKKKYGGYF--GVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITG 66
           +L  +    V K YG Y+    +V+ L   G       +   E   +  F S +G +  G
Sbjct: 8   ILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPG 67

Query: 67  SCNDAHGNDVWICKL----IALLKQLDSLRKKVLGICFGHQVRAI 107
              D   +D          +++    D     V G C G +  ++
Sbjct: 68  GSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSL 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	99.92
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	99.85
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	99.81
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	99.79
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	99.79
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	99.78
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	99.77
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	99.75
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	99.73
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	99.72
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	99.54
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	99.51
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	99.46
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	99.44
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	99.36
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	99.25
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	99.21
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	99.14
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.08
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	98.81
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	98.77
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	98.77
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	98.76
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	98.76
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	98.71
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	98.46
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	98.46
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	98.36
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	96.47
d1t0ba_	240	GK2113 homologue {Bacillus stearothermophilus [Tax	95.27
d1u0ta_	302	Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob	95.06
d1z0sa1	249	Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa	93.73
d2arka1	184	Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}	93.48
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	90.85
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	90.74
d1ycga1	149	Nitric oxide reductase C-terminal domain {Moorella	90.36
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	89.47
d1wu2a3	144	MoeA, central domain {Pyrococcus horikoshii, PH164	87.91
d1eiwa_	111	Hypothetical protein MTH538 {Archaeon Methanobacte	87.57
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	86.22
d1t0ia_	185	Hypothetical protein Ylr011wp {Baker's yeast (Sacc	85.22
d2ftsa3	155	Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId	85.09
d1uz5a3	148	MoeA, central domain {Archaeon Pyrococcus horikosh	85.08
d1nni1_	171	Azobenzene reductase {Bacillus subtilis [TaxId: 14	84.99
d1ydga_	201	Trp repressor binding protein WrbA {Deinococcus ra	84.99
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	84.35
d2qwxa1	230	Quinone reductase type 2 (menadione reductase) {Hu	84.18
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	81.43
d1ehsa_	48	Heat-stable enterotoxin B {Escherichia coli [TaxId	80.32
d1tjya_	316	AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370	80.29
d2a5la1	196	Trp repressor binding protein WrbA {Pseudomonas ae	80.15

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=3.7e-25  Score=161.53  Aligned_cols=105  Identities=18%  Similarity=0.294  Sum_probs=90.0

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCCCCc--hHH
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHGND--VWI   78 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~~~~--~~~   78 (126)
                      ..|||+||++.+...         .+.+.++|++.|.+++++++...+ +|  +++++||+|||+|||.+++++.  +|+
T Consensus         2 ~~mrvli~qh~~~e~---------~G~~~~~l~~~g~~~~~~~~~~~~~~p--~~l~~~d~iii~Ggp~~~~d~~~~~~~   70 (230)
T d1o1ya_           2 HHVRVLAIRHVEIED---------LGMMEDIFREKNWSFDYLDTPKGEKLE--RPLEEYSLVVLLGGYMGAYEEEKYPFL   70 (230)
T ss_dssp             CCCEEEEECSSTTSS---------CTHHHHHHHHTTCEEEEECGGGTCCCS--SCGGGCSEEEECCCSCCTTCTTTCTHH
T ss_pred             CceEEEEEECCCCCC---------cHHHHHHHHHCCCEEEEEECCCCCcCC--cchhhCCEEEEcCCCcccccchhhhhh
Confidence            358999999987643         234778888899999999987554 33  3678999999999999998764  899


Q ss_pred             HHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           79 CKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      ..+.++|+++++.++|+||||+|||+|++++||+|.+++
T Consensus        71 ~~~~~~i~~~~~~~~PilGIC~G~Qlla~alGg~V~~~~  109 (230)
T d1o1ya_          71 KYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGK  109 (230)
T ss_dssp             HHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECT
T ss_pred             HHHHHHHHHHHHhcceEEEeecCHHHHHHHhcccccccc
Confidence            999999999999999999999999999999999999865

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=8.8e-22  Score=139.90  Aligned_cols=98  Identities=20%  Similarity=0.222  Sum_probs=78.9

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      |+||+|++++.          +|+.++.+.|++.|.++++++..   .+ .+++.++|+||++||+.++.++..|+..+.
T Consensus         1 m~ki~iiD~g~----------~~~~~i~r~l~~lg~~~~i~~~d---~~-~~~~~~~dgiIl~Gg~~~~~~~~~~~~~l~   66 (196)
T d2a9va1           1 MLKIYVVDNGG----------QWTHREWRVLRELGVDTKIVPND---ID-SSELDGLDGLVLSGGAPNIDEELDKLGSVG   66 (196)
T ss_dssp             CCBEEEEEESC----------CTTCHHHHHHHHTTCBCCEEETT---SC-GGGGTTCSEEEEEEECSCGGGTGGGHHHHH
T ss_pred             CCEEEEEECCC----------cHHHHHHHHHHHCCCeEEEEeCC---CC-HHHHhcCCcEEEeccccccccccchhhhHH
Confidence            78999999865          46778899999999999988642   11 235789999999999988877777776554


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      +   .+.+.++|+||||+|||+|+.++||++.+..
T Consensus        67 ~---~~~~~~~PilGIC~G~Qll~~~~gg~~~~~~   98 (196)
T d2a9va1          67 K---YIDDHNYPILGICVGAQFIALHFGASVVKAK   98 (196)
T ss_dssp             H---HHHHCCSCEEEETHHHHHHHHHTTCEEEEEE
T ss_pred             H---HHhhcCceEEEeehhhhhhhhcccccccccc
Confidence            4   4456799999999999999999999888654

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.81  E-value=9.4e-21  Score=134.03  Aligned_cols=98  Identities=14%  Similarity=0.130  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      .|+|++          +||||++++.++|++.|.++++++...   +..+++  -++|+|+++|||.++.+....  ...
T Consensus         3 ~~liiD----------~~dsft~Ni~~~l~~lG~~~~vi~~d~---~~~~~i~~~~~~gvilsgGp~~~~~~~~~--~~~   67 (195)
T d1qdlb_           3 LTLIID----------NYDSFVYNIAQIVGELGSYPIVIRNDE---ISIKGIERIDPDRLIISPGPGTPEKREDI--GVS   67 (195)
T ss_dssp             EEEEEE----------CSCSSHHHHHHHHHHTTCEEEEEETTT---SCHHHHHHHCCSEEEECCCSSCTTSHHHH--TTH
T ss_pred             EEEEEE----------CCCchHHHHHHHHHhCCCeEEEEeCCC---CCHHHHHhhCCCccccCCCCCcccccccc--ccc
Confidence            578885          567899999999999999999887432   111122  257999999999988653211  122


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      ..+.+.++.++|+||||+|||+|+.++|+++.+.+
T Consensus        68 ~~i~~~~~~~~PiLGIClG~Qll~~~~G~~v~~~~  102 (195)
T d1qdlb_          68 LDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRAR  102 (195)
T ss_dssp             HHHHHHHTTTSCEEEETHHHHHHHHHTTCEEEEEE
T ss_pred             hhhhhhhcCCCCEEEeehhhhhhhhccCCEEEeec
Confidence            23455567899999999999999999999998754

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=99.79  E-value=2.8e-20  Score=131.87  Aligned_cols=98  Identities=14%  Similarity=0.094  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      .|+|++          +||||++++.++|++.|.++++++.....-...+.+  .++|+|+++|||.++.+...     .
T Consensus         2 niliiD----------~~DSFt~ni~~~l~~lG~~~~v~~~~~~~~~~~~~l~~~~~~~iils~Gpg~~~~~~~-----~   66 (192)
T d1i7qb_           2 DILLLD----------NVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGC-----M   66 (192)
T ss_dssp             EEEEEE----------CSCSSHHHHHHHHHHTTCEEEEEETTSCHHHHHHHHHHCSSEEEEECCCSSCGGGSTT-----H
T ss_pred             cEEEEE----------CCCcHHHHHHHHHHHCCCeEEEEeCCCcccccHHHHHhcCCCeEEecCcccccccccc-----c
Confidence            577775          578999999999999999999987432100000111  36899999999988755331     2


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      ..+++.++.++|+||||+|||+|+.++||++.+.+
T Consensus        67 ~~i~~~l~~~iPiLGIClG~Q~la~~~Gg~v~~~~  101 (192)
T d1i7qb_          67 PELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAG  101 (192)
T ss_dssp             HHHHHHHBTTBCEEEETHHHHHHHHHTTCEEEEEE
T ss_pred             hhhHHhhhcCccEEeeeHHHHHHHHHCCCeEEECC
Confidence            23456667899999999999999999999998764

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.6e-19  Score=131.42  Aligned_cols=95  Identities=18%  Similarity=0.241  Sum_probs=74.2

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC-CCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD-DFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~-~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      .||+|++++...            ++.+.|++.|..++++....   +..+ ...++||||++|||.++.+.    ....
T Consensus        40 ~~i~~~D~G~k~------------~ilr~l~~~~~~~~v~p~~~---~~~~i~~~~pdgivlS~GPg~P~~~----~~~~  100 (228)
T d1a9xb2          40 FHVVAYDFGAKR------------NILRMLVDRGCRLTIVPAQT---SAEDVLKMNPDGIFLSNGPGDPAPC----DYAI  100 (228)
T ss_dssp             EEEEEEESSCCH------------HHHHHHHHTTEEEEEEETTC---CHHHHHTTCCSEEEECCCSBCSTTC----HHHH
T ss_pred             ceEEEEeCCCcH------------HhHhHHHhcCceEEEcCCCC---CHHHHHhcCCCEEEEeCCCCccccc----hhHH
Confidence            589999987762            25588889999999887532   1111 12479999999999998664    2355


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS  117 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~  117 (126)
                      +.++++++.++|+||||+|||+|+.++||++.+.+
T Consensus       101 ~~~~~~~~~~iPILGIClG~Qlia~~~Gg~v~k~~  135 (228)
T d1a9xb2         101 TAIQKFLETDIPVFGICLGHQLLALASGAKTVKMK  135 (228)
T ss_dssp             HHHHHHTTSCCCEEEETHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHhCCCCEEEEEcChHHHHHHcCCceeecc
Confidence            66778888899999999999999999999998764

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=4.4e-20  Score=131.44  Aligned_cols=105  Identities=13%  Similarity=0.152  Sum_probs=77.8

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK   80 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~   80 (126)
                      |.+.||+||+++.          +|+..+.+.+++.|.++++++....  ........+|+++++|||.++.+...+   
T Consensus         3 ~~~~kI~IiD~G~----------~~~~~I~r~lr~lg~~~~I~~~d~~--~~~~~~~~~~giils~gp~~~~~~~~~---   67 (205)
T d1gpma2           3 IHKHRILILDFGS----------QYTQLVARRVRELGVYCELWAWDVT--EAQIRDFNPSGIILSGGPESTTEENSP---   67 (205)
T ss_dssp             TTSSEEEEEECSC----------TTHHHHHHHHHHTTCEEEEEESCCC--HHHHHHHCCSEEEECCCSSCTTSTTCC---
T ss_pred             CccCeEEEEECCc----------hHHHHHHHHHHHCCCEEEEECCCCC--HHHHhhcCCCeEEecCCCCccchhhhh---
Confidence            6678999999865          3677788999999999998874311  111122478999999999888654322   


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT  122 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~  122 (126)
                        ..++..++.++|+||||+|||+|+.++||++.+.+ ..+|+
T Consensus        68 --~~~~~~~~~~~PiLGIClG~Qlla~~~Gg~v~~~~~~~~G~  108 (205)
T d1gpma2          68 --RAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGY  108 (205)
T ss_dssp             --CCCGGGGTSSSCEEEETHHHHHHHHHHTCEEECCSSCEEEE
T ss_pred             --hHHHHHHhCCCCEEEeccchhhhhhhcCCccccccccccCc
Confidence              12345567899999999999999999999998754 33443

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=4e-19  Score=124.62  Aligned_cols=98  Identities=17%  Similarity=0.200  Sum_probs=74.9

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      |+|+||+++.          +|++++.++|++.|.++++++... ..... ....+|||+++|++..+.+..     ...
T Consensus         1 mmI~iiD~g~----------~~~~~i~~~L~~~G~~~~v~~~~~-~~~~~-~~~~~~gvilsgg~~~~~~~~-----~~~   63 (188)
T d1wl8a1           1 MMIVIMDNGG----------QYVHRIWRTLRYLGVETKIIPNTT-PLEEI-KAMNPKGIIFSGGPSLENTGN-----CEK   63 (188)
T ss_dssp             CEEEEEECSC----------TTHHHHHHHHHHTTCEEEEEETTC-CHHHH-HHTCCSEEEECCCSCTTCCTT-----HHH
T ss_pred             CEEEEEECCC----------cHHHHHHHHHHHCCCeEEEEeCCC-CHHHH-hhhccceeeeccCcccccccc-----ccc
Confidence            5799998864          578899999999999999887431 11111 123689999999987765432     345


Q ss_pred             HHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCc
Q 033165           84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHINASK  118 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~  118 (126)
                      +++++.+.++|+||||+|||+|+.++|+++.+.++
T Consensus        64 ~i~~~~~~~~PiLGIClG~Q~l~~~~G~~~~~~~~   98 (188)
T d1wl8a1          64 VLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGEK   98 (188)
T ss_dssp             HHHTGGGTCSCEEEETHHHHHHHHHHTCEEEECSC
T ss_pred             ccccccccccceeehhhhhhhhhhhcCCccccccc
Confidence            56777788999999999999999999999987543

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.75  E-value=8.7e-20  Score=129.99  Aligned_cols=94  Identities=21%  Similarity=0.269  Sum_probs=70.5

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK   80 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~   80 (126)
                      |+.|||+||+....   .+       . ..++|++.|.++.+++   +  |  +++.++|+||||||+.+......|...
T Consensus         4 ~~~mkIgii~~~Gn---~~-------s-~~~al~~~G~~~~~v~---~--~--~~l~~~D~lIlPGG~~~~~~~~l~~~~   65 (202)
T d1q7ra_           4 QSNMKIGVLGLQGA---VR-------E-HVRAIEACGAEAVIVK---K--S--EQLEGLDGLVLPGGESTTMRRLIDRYG   65 (202)
T ss_dssp             CCCCEEEEESCGGG---CH-------H-HHHHHHHTTCEEEEEC---S--G--GGGTTCSEEEECCCCHHHHHHHHHHTT
T ss_pred             ccCCEEEEEECCCC---HH-------H-HHHHHHHCCCcEEEEC---C--H--HHHhcCCEEEECCCCcHHHHHHhhhhH
Confidence            67899999977421   11       1 3578899999988875   1  3  367899999999987543222244555


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCc
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSS  112 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~  112 (126)
                      +.++|+++++.++|+||||+|||+|++..++.
T Consensus        66 l~~~I~~~~~~gkPiLGIClG~Qll~~~~~~~   97 (202)
T d1q7ra_          66 LMEPLKQFAAAGKPMFGTCAGLILLAKRIVGY   97 (202)
T ss_dssp             CHHHHHHHHHTTCCEEEETTHHHHHEEEEESS
T ss_pred             HHHHHhhhccccceeeeeehhhHHhhhhcccc
Confidence            67889999999999999999999999866553

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=4.3e-19  Score=125.79  Aligned_cols=93  Identities=16%  Similarity=0.240  Sum_probs=67.1

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI   82 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~   82 (126)
                      |+||+||+......          . ..++|++.|.++.+++-     |  ++++++|+||||||+.++.....+...+.
T Consensus         1 m~~igv~~~~G~~~----------~-~~~al~~~G~~~~~i~~-----~--~~l~~~D~lIlPGG~~~~~~~~~~~~~~~   62 (195)
T d2nv0a1           1 MLTIGVLGLQGAVR----------E-HIHAIEACGAAGLVVKR-----P--EQLNEVDGLILPGGESTTMRRLIDTYQFM   62 (195)
T ss_dssp             CCEEEEECSSSCCH----------H-HHHHHHHTTCEEEEECS-----G--GGGGGCSEEEECCSCHHHHHHHHHHTTCH
T ss_pred             CcEEEEEecCChHH----------H-HHHHHHHCCCcEEEECC-----H--HHHhhCCEEEECCCCccHHHHHhhhchhc
Confidence            78999998853321          1 35678899998887751     2  35789999999998654322222333456


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHHhCCcc
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSH  113 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v  113 (126)
                      +.|+++.+.++|+||||+|||+|++++++..
T Consensus        63 ~~I~~~~~~g~pilGIC~G~Qll~~~~~g~~   93 (195)
T d2nv0a1          63 EPLREFAAQGKPMFGTCAGLIILAKEIAGSD   93 (195)
T ss_dssp             HHHHHHHHTTCCEEEETHHHHHHSBCCC---
T ss_pred             chhhhhhhhcceeeeccccHHHHHhhhcccc
Confidence            7788888899999999999999999887743

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=99.72  E-value=6.2e-18  Score=126.32  Aligned_cols=107  Identities=16%  Similarity=0.236  Sum_probs=80.2

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC----CCC------------CCCCcCEEEEcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP----DDD------------DFGSYDGYVITG   66 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p----~~~------------~~~~~d~iii~G   66 (126)
                      .+||+||+..++...++.       .|.++|.....++++.-......+    ..+            ..++|||+||+|
T Consensus        19 pL~I~iLNlMP~k~~TE~-------qf~rll~~~~~qv~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~fDglIITG   91 (281)
T d2ghra1          19 ALKIAILNLMPTKQETEA-------QLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITG   91 (281)
T ss_dssp             CEEEEEECCCSSHHHHHH-------HHHHHTTSSSSCEEEEEECCCC------------CCEECHHHHTTCCEEEEEECC
T ss_pred             eeEEEEEecCCcchhhHH-------HHHHHhcCCcceEEEEEeeecccccCCccHHHHHhcchhHHHhhcccCCEEEEeC
Confidence            369999999887654433       477888776666654432211000    000            125699999999


Q ss_pred             CCCCC--CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165           67 SCNDA--HGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA  116 (126)
Q Consensus        67 ~~~~~--~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~  116 (126)
                      +|.+.  +++.+|+.++.++++.+.+..+|+||||||||+++.++||.+.++
T Consensus        92 ap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~lgGi~k~~  143 (281)
T d2ghra1          92 APVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYP  143 (281)
T ss_dssp             CSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEE
T ss_pred             CCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHhCCCcccc
Confidence            99887  567799999999999999889999999999999999999987754

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=1.3e-16  Score=112.71  Aligned_cols=91  Identities=18%  Similarity=0.264  Sum_probs=55.5

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-hHHH--H
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-VWIC--K   80 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-~~~~--~   80 (126)
                      |||+||+++..+-          ..+.++|++.+..+..+.+...+.+   +...+|+|||||...  +++. ..+.  .
T Consensus         1 MKI~IiDyg~gN~----------~si~~al~~~g~~~~~~~~~~~~~~---~~~~~D~lIlPG~G~--f~~~~~~l~~~~   65 (200)
T d1k9vf_           1 MRIGIISVGPGNI----------MNLYRGVKRASENFEDVSIELVESP---RNDLYDLLFIPGVGH--FGEGMRRLREND   65 (200)
T ss_dssp             CEEEEECSSSSCC----------HHHHHHHHHHTTTSSSCEEEEESSS---CSCCCSEEEECCCSC--HHHHHHHHHHTT
T ss_pred             CEEEEEeCCCcHH----------HHHHHHHHHhccccccceEEEeCCh---HhhccCeEEEcChHH--HHHHHHhhhccc
Confidence            6899998877531          2245556555543322221101112   346799999998421  1211 1111  2


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      +.+.|+++++.++|+||||+|||+|+...
T Consensus        66 ~~~~i~~~~~~~~PiLGIClG~QlL~~~~   94 (200)
T d1k9vf_          66 LIDFVRKHVEDERYVVGVCLGMQLLFEES   94 (200)
T ss_dssp             CHHHHHHHHHTTCEEEEETHHHHTTEEEE
T ss_pred             ccccccccccccceEEEEecceeEEeeec
Confidence            45678888888999999999999999764

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.46  E-value=5.2e-15  Score=105.13  Aligned_cols=97  Identities=20%  Similarity=0.233  Sum_probs=59.3

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC-eEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCC--chHH
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE-TWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGN--DVWI   78 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~--~~~~   78 (126)
                      +.+||+||......          .. ..++|++.+. .+++..+. +  |  ++++++|+|||||++......  ....
T Consensus         1 ~~ikIGvl~l~G~~----------~~-~~~al~~lg~~~~~v~~~~-~--~--~~l~~~D~lIlPGgg~~~~~~~~~~~~   64 (218)
T d2abwa1           1 SEITIGVLSLQGDF----------EP-HINHFIKLQIPSLNIIQVR-N--V--HDLGLCDGLVIPGGESTTVRRCCAYEN   64 (218)
T ss_dssp             CCEEEEEECTTSCC----------HH-HHHHHHTTCCTTEEEEEEC-S--H--HHHHTCSEEEECCSCHHHHHHHTTHHH
T ss_pred             CCCEEEEEeCCCcH----------HH-HHHHHHHcCCCceEEEEeC-C--H--HHHhhCCEEEEcCCCccHHHHHHHHHh
Confidence            46899999764332          22 2356777774 33443332 1  2  357899999999986432111  1112


Q ss_pred             HHHHH-HHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165           79 CKLIA-LLKQLDSLRKKVLGICFGHQVRAITVFSSHI  114 (126)
Q Consensus        79 ~~~~~-~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~  114 (126)
                      ..+.+ +++...+.++|+||||+|||+|+...++...
T Consensus        65 ~~~~~~i~~~~~~~gkPilGIC~G~QlL~~~~~~~~~  101 (218)
T d2abwa1          65 DTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKL  101 (218)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEETHHHHHTEEEEECCCS
T ss_pred             ccchHHHHHHHHHcCCeEEEecHHHHHHHHhccCCcc
Confidence            22333 3444455799999999999999987655443

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=99.44  E-value=1.6e-14  Score=100.21  Aligned_cols=88  Identities=17%  Similarity=0.143  Sum_probs=62.8

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCC-CchHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHG-NDVWICKLI   82 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~-~~~~~~~~~   82 (126)
                      |||+||+++..          +.+.+.++|++.|.++.+++   +  |  ++++++|++|+||++..... .........
T Consensus         1 Mki~IiD~G~g----------N~~si~~~l~~lg~~~~i~~---~--~--~~i~~~d~lIlpG~g~~~~~~~~~~~~~~~   63 (195)
T d1ka9h_           1 MKALLIDYGSG----------NLRSAAKALEAAGFSVAVAQ---D--P--KAHEEADLLVLPGQGHFGQVMRAFQESGFV   63 (195)
T ss_dssp             CEEEEECSSCS----------CHHHHHHHHHHTTCEEEEES---S--T--TSCSSCSEEEECCCSCHHHHHHTTSSSCTH
T ss_pred             CEEEEEeCCCc----------HHHHHHHHHHHCCCeEEEEC---C--H--HHHHHHhhhhcCCCccccchhhhccccCCc
Confidence            68999988775          45568899999999988764   2  2  36789999999998643210 000011133


Q ss_pred             HHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           83 ALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        83 ~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      ..+....+.++|+||||+|||+|+..
T Consensus        64 ~~~~~~~~~g~pilGiClG~qll~~~   89 (195)
T d1ka9h_          64 ERVRRHLERGLPFLGICVGMQVLYEG   89 (195)
T ss_dssp             HHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             ccccccccccchhhhhhhhhheeeec
Confidence            45666667899999999999999864

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-13  Score=101.93  Aligned_cols=111  Identities=17%  Similarity=0.197  Sum_probs=64.5

Q ss_pred             CCeEEEEEcCCCchHHHHhhC-CH-HHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYG-GY-FGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK   80 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~-~~-~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~   80 (126)
                      ++=|+|+-....... ...++ +| ...+.++++.+|..+..+.....+-.-...++..||||+|||+.+... ..+.+.
T Consensus         3 kPiIGI~~~~~~~~~-~~~~~~~yi~~sYvk~ie~aGa~vvpi~~~~~~~~~~~~l~~idGillpGG~~~~~~-~~~~~~   80 (288)
T d1l9xa_           3 KPIIGILMQKCRNKV-MKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRR-SDYAKV   80 (288)
T ss_dssp             CCEEEEECEECCSHH-HHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTT-CHHHHH
T ss_pred             CCEEEEeCCcccCcc-cccchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHhhcCCeEecCCCCCccc-cccccc
Confidence            345777754333222 22222 22 224567888899877666543211000012457899999999866533 333333


Q ss_pred             HHHHHHH-----HHhcCCcEEEEchHHHHHHHHhCCcccc
Q 033165           81 LIALLKQ-----LDSLRKKVLGICFGHQVRAITVFSSHIN  115 (126)
Q Consensus        81 ~~~~i~~-----~~~~~~PvlGIC~G~Q~la~~~Gg~v~~  115 (126)
                      .+.++..     ..+..+|+||||+|||+|+.++||++..
T Consensus        81 ~r~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~~gG~~~~  120 (288)
T d1l9xa_          81 AKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLL  120 (288)
T ss_dssp             HHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCC
T ss_pred             chHHHHHHHHHHHhhCCCCeEEEcHHHHHHHHHhCCEeec
Confidence            2222222     2234689999999999999999998764

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.25  E-value=1.3e-11  Score=90.02  Aligned_cols=97  Identities=18%  Similarity=0.239  Sum_probs=60.7

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHH---HHHhhCCCeEEEEEccCCCCCCC---CCCCCcCEEEEcCCCCCCCCCchH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFV---RMLAEEGETWDVFHVARGEFPDD---DDFGSYDGYVITGSCNDAHGNDVW   77 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~~~~~~~~~~~~p~~---~~~~~~d~iii~G~~~~~~~~~~~   77 (126)
                      .+|+|+-=-..   ..   |+|-..+.   +.--..+.++++..+...++...   +.+.++|||+||||...- .    
T Consensus         4 v~IaiVGKY~~---l~---DaY~Si~eAL~hA~~~~~~~v~i~wi~s~~l~~~~~~~~L~~~dGIlvPGGFG~r-G----   72 (250)
T d1vcoa1           4 VKIAIAGKYVK---MP---DAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVR-G----   72 (250)
T ss_dssp             EEEEEEESCC---------CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSST-T----
T ss_pred             EEEEEEeCCCC---Cc---hHHHHHHHHHHHhHHhcCCeEEEEEEcchhcchhhHHHHHhcCCeEEecCCCCcc-c----
Confidence            46777743222   33   34544333   22234577777776654433221   237889999999997532 1    


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCC
Q 033165           78 ICKLIALLKQLDSLRKKVLGICFGHQVRAITVFS  111 (126)
Q Consensus        78 ~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg  111 (126)
                      ++.-...++.+.++++|+||||+|||++...+.-
T Consensus        73 ~eGki~ai~yARen~iPfLGIClGmQ~avIEfAR  106 (250)
T d1vcoa1          73 IEGKVRAAQYARERKIPYLGICLGLQIAVIEFAR  106 (250)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHH
Confidence            3445556888888999999999999999876543

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1e-11  Score=90.90  Aligned_cols=97  Identities=14%  Similarity=0.176  Sum_probs=62.5

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHH---hhCCCeEEEEEccCCCC--CCCCCCCCcCEEEEcCCCCCCCCCchHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRML---AEEGETWDVFHVARGEF--PDDDDFGSYDGYVITGSCNDAHGNDVWI   78 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l---~~~g~~~~~~~~~~~~~--p~~~~~~~~d~iii~G~~~~~~~~~~~~   78 (126)
                      .+|+++-=-...   .   |+|-..+..+-   -..+.++++..+...++  ...+.+.++|||++|||...- .    +
T Consensus         4 v~Ia~vGKY~~l---~---DaY~Sv~eaL~ha~~~~~~~v~i~wi~s~~~e~~~~~~L~~~dGIlvPGGFG~R-G----~   72 (258)
T d1s1ma1           4 VTIGMVGKYIEL---P---DAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYR-G----V   72 (258)
T ss_dssp             EEEEEEESSCSS---G---GGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSST-T----H
T ss_pred             eEEEEEeCcCCC---c---hhHHhHHHHHHHhHHhcCCeEEEEEEccccccccccccccccccEEeecccCcC-C----H
Confidence            567777544432   2   34555443322   23466677666643211  112468899999999996532 1    4


Q ss_pred             HHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCC
Q 033165           79 CKLIALLKQLDSLRKKVLGICFGHQVRAITVFS  111 (126)
Q Consensus        79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg  111 (126)
                      +.....++.+.++++|+||||+|||++...+.-
T Consensus        73 eGki~ai~yARen~iPfLGIClGmQ~avIE~AR  105 (258)
T d1s1ma1          73 EGMITTARFARENNIPYLGICLGMQVALIDYAR  105 (258)
T ss_dssp             HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence            556677888888999999999999999876643

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.14  E-value=3.4e-11  Score=88.52  Aligned_cols=96  Identities=17%  Similarity=0.162  Sum_probs=65.9

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc----hH
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND----VW   77 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~----~~   77 (126)
                      +++|++||.....+.+..         ...+|+..|.+++.++..+- +....++.+||+|+++||.+-- |..    .|
T Consensus         5 ~kpkvaVl~~pGtNcd~e---------~~~Af~~aG~~~~~v~~~dl-~~~~~~L~~~~~lvipGGFSyg-D~l~ag~~~   73 (262)
T d1t3ta2           5 ARPKVAVLREQGVNSHVE---------MAAAFHRAGFDAIDVHMSDL-LGGRIGLGNFHALVACGGFSYG-DVLGAGEGW   73 (262)
T ss_dssp             CCCEEEEEECTTBCCHHH---------HHHHHHHTTCEEEEEEHHHH-HHTSCCGGGCSEEEECCBCGGG-GTTSTTHHH
T ss_pred             CCCeEEEEeCCCCCcHHH---------HHHHHHHcCCceEEEEeeec-ccCcccccccceEEEecccccc-ccccchhHH
Confidence            368999999988876432         45788999999998876421 1122368999999999996422 211    23


Q ss_pred             HHH------HHHHHHHHH-hcCCcEEEEchHHHHHHHH
Q 033165           78 ICK------LIALLKQLD-SLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        78 ~~~------~~~~i~~~~-~~~~PvlGIC~G~Q~la~~  108 (126)
                      ...      +.+.+.+++ +.++|+||||.|+|+|.+.
T Consensus        74 a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQiL~el  111 (262)
T d1t3ta2          74 AKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNL  111 (262)
T ss_dssp             HHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred             HhhhhhhhHHHHHHHHHhhcCCceEEeechHHHHHHHh
Confidence            322      223334444 3589999999999999984

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.7e-10  Score=82.51  Aligned_cols=103  Identities=17%  Similarity=0.187  Sum_probs=69.7

Q ss_pred             CCeEEEEEcC----CCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC---------------------------
Q 033165            3 GKKFAVLLCA----EDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP---------------------------   51 (126)
Q Consensus         3 ~~ki~Il~~~----~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p---------------------------   51 (126)
                      |+||+|+-.+    +..+..+     .. .....|++.|++++++.+..+..+                           
T Consensus         1 MkKvaviLsg~g~~DG~E~~E-----~~-~~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~   74 (217)
T d1vhqa_           1 MKKIGVILSGCGVYDGSEIHE-----AV-LTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGE   74 (217)
T ss_dssp             CCEEEEECCSBSTTTSBCHHH-----HH-HHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTC
T ss_pred             CCEEEEEecCCCCCCchhHHH-----HH-HHHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccc
Confidence            6899999753    2222111     11 134678899999999987532111                           


Q ss_pred             ----CCCCCCCcCEEEEcCCCCCCCCCchH---------HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCC
Q 033165           52 ----DDDDFGSYDGYVITGSCNDAHGNDVW---------ICKLIALLKQLDSLRKKVLGICFGHQVRAITVFS  111 (126)
Q Consensus        52 ----~~~~~~~~d~iii~G~~~~~~~~~~~---------~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg  111 (126)
                          ...+.++||+|++|||.....+-..+         .+.+.++++++.++++|+.+||.|.++|+.+++.
T Consensus        75 ~~~l~~v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~~  147 (217)
T d1vhqa_          75 IRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDF  147 (217)
T ss_dssp             CEEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSS
T ss_pred             cCChHHCCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhcc
Confidence                00133689999999997543221111         2567889999999999999999999999998654

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.81  E-value=1.5e-09  Score=77.48  Aligned_cols=105  Identities=17%  Similarity=0.236  Sum_probs=68.1

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhC----CHHHHHHHHHhhCCCeEEEEEccCCCCC-------------------------
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYG----GYFGVFVRMLAEEGETWDVFHVARGEFP-------------------------   51 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~p-------------------------   51 (126)
                      |++ ||||+-.+...-.-...-|    ++...+ +.|++.|+++++..+..+..+                         
T Consensus         1 M~K-kvLiv~s~~~~~~~~~~tG~~~~E~~~P~-~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~   78 (221)
T d1u9ca_           1 MSK-RVLMVVTNHTTITDDHKTGLWLEEFAVPY-LVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTAR   78 (221)
T ss_dssp             CCC-EEEEEECCCCEEETTEECCBCHHHHHHHH-HHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEE
T ss_pred             CCc-eEEEEecCchhccCCCcccccHHHHHHHH-HHHHHCCCEEEEEecCCCcceeccCccccccchhHHHHHHhhCCCC
Confidence            554 8999988754210000001    122323 577899999999987422111                         


Q ss_pred             -CCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           52 -DDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        52 -~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                       +..+.++||+|+||||....++ .+....+.++++++.+.++|+.+||.|.++|..+
T Consensus        79 l~~v~~~dYd~v~iPGG~g~~~~-l~~~~~l~~li~~~~~~~k~iaAIChgp~~l~~a  135 (221)
T d1u9ca_          79 LSKDDAHGFDAIFLPGGHGTMFD-FPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA  135 (221)
T ss_dssp             CCGGGGSSCSEEEECCCTTHHHH-STTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             hhHCCHhHCCEEEeCCCCchhhc-chhhHHHHHHHHHHHhccCcceeecccceeeecc
Confidence             1113468999999999753321 1223567788999999999999999999999864

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=6.1e-09  Score=71.96  Aligned_cols=98  Identities=21%  Similarity=0.218  Sum_probs=67.8

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CC--------CCC------CCCCcCEEEEcCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FP--------DDD------DFGSYDGYVITGS   67 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p--------~~~------~~~~~d~iii~G~   67 (126)
                      +|||+|+-.+.-++.      ++.. ..+.|++.|++++++.+..++ ..        ...      ...+||+|+||||
T Consensus         1 sKkvlvll~~Gfe~~------E~~~-p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG   73 (186)
T d1p5fa_           1 SKRALVILAKGAEEM------ETVI-PVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGG   73 (186)
T ss_dssp             CCEEEEEECTTCCHH------HHHH-HHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCC
T ss_pred             CcEEEEEeCCCCCHH------HHHH-HHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecC
Confidence            489999998776542      1222 336778899999998865321 10        000      1247999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           68 CNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        68 ~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .... +...-.+.+.++++++.++++|+.+||.|.++|+++
T Consensus        74 ~~~~-~~l~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~a  113 (186)
T d1p5fa_          74 NLGA-QNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH  113 (186)
T ss_dssp             HHHH-HHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             cccc-ccccchHHHHHHHHHhhccccceeecccCcchhhhc
Confidence            5322 111122557889999999999999999999999985

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=8.6e-09  Score=70.42  Aligned_cols=97  Identities=19%  Similarity=0.232  Sum_probs=66.4

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC--------CC---CC----CCCCCCcCEEEEcCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG--------EF---PD----DDDFGSYDGYVITGS   67 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--------~~---p~----~~~~~~~d~iii~G~   67 (126)
                      .+||+||-.+.-.+.      ++.. ..+.|++.|.+++++.+..+        ..   ++    .....+||+|++|||
T Consensus         1 ~KkIail~~dgf~~~------E~~~-~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG   73 (170)
T d1oi4a1           1 SKKIAVLITDEFEDS------EFTS-PADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG   73 (170)
T ss_dssp             CCEEEEECCTTBCTH------HHHH-HHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB
T ss_pred             CCEEEEEeCCCcCHH------HHHH-HHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccc
Confidence            479999988766432      1222 34677889999888765321        11   11    012358999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           68 CNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        68 ~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      ....+  ....+++.++++++.+.++|+.+||.|..+|+++
T Consensus        74 ~~~~~--l~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~  112 (170)
T d1oi4a1          74 HSPDY--LRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA  112 (170)
T ss_dssp             THHHH--HTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred             hhhhh--hccChHHHHHHHHHhhcCCeeeecccchHHHhhh
Confidence            53211  1112567889999999999999999999999984

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=98.77  E-value=5.4e-09  Score=70.51  Aligned_cols=97  Identities=13%  Similarity=0.028  Sum_probs=67.3

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC---------CC----CCCCCCcCEEEEcCCC
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF---------PD----DDDFGSYDGYVITGSC   68 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~---------p~----~~~~~~~d~iii~G~~   68 (126)
                      ..+||+||-.+.-+..-      +.. ..+.|++.|.++.++.+..+..         ++    .....+||+|+||||.
T Consensus         2 ~grkVaiLv~dg~~~~e------~~~-~~~~l~~ag~~v~~v~~~~~~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~   74 (156)
T d1p80a1           2 KGRVVAILLNDEVRSAD------LLA-ILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGN   74 (156)
T ss_dssp             TTCEEEEECCTTCCHHH------HHH-HHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSC
T ss_pred             CCcEEEEEeCCCCCHHH------HHH-HHHHHHHCCCEEEEEecccccccccceeEEeeeeeeccCCcccCCEEEeeCCc
Confidence            35799999887765421      222 4467788899888876542211         11    0123489999999994


Q ss_pred             CCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           69 NDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        69 ~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      .+   +.....+..+||+++.++++||.+||-|.++|+.+
T Consensus        75 ~~---~l~~~~~~~~~i~e~~~~~K~I~aic~g~~~La~a  111 (156)
T d1p80a1          75 IA---DIADNGDANYYLMEAYKHLKPIALAGDARKFKATI  111 (156)
T ss_dssp             TH---HHHTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGTT
T ss_pred             hH---HHhcchHHHHHHHHHHHcCCeEEEECchHHHHHHc
Confidence            32   12222557789999999999999999999999875

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.76  E-value=5.6e-09  Score=70.85  Aligned_cols=96  Identities=22%  Similarity=0.225  Sum_probs=66.2

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC---------CC----CCCCCCcCEEEEcCCCCC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF---------PD----DDDFGSYDGYVITGSCND   70 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~---------p~----~~~~~~~d~iii~G~~~~   70 (126)
                      |||+|+-.+.-.+.      ++.. ..+.|++.|.+++++.+..+..         |+    .....+||+|++|||+..
T Consensus         1 mKv~il~~dgf~~~------E~~~-p~~~l~~ag~~v~~vs~~~~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~~~   73 (166)
T d1g2ia_           1 MKVLFLTANEFEDV------ELIY-PYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAP   73 (166)
T ss_dssp             CEEEEECCTTBCHH------HHHH-HHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHH
T ss_pred             CEEEEEeCCCcCHH------HHHH-HHHHHHHCCCEEEEEeCCCceEeecCCcEEeccccHHHcCcccccEEEEecccch
Confidence            68999988765432      1222 3367788999998887542210         11    012358999999999532


Q ss_pred             CCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           71 AHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      ..  ....+++.++++++.++++|+.+||-|..+|+++
T Consensus        74 ~~--~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a  109 (166)
T d1g2ia_          74 ER--VRLNEKAVSIARKMFSEGKPVASICHGPQILISA  109 (166)
T ss_dssp             HH--HTTCHHHHHHHHHHHHTTCCEEEETTTTHHHHHH
T ss_pred             hh--hccChHHHHHHHHHHhcCCeeeeccccchhhhhc
Confidence            11  1112567889999999999999999999999986

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=98.76  E-value=1.2e-08  Score=69.84  Aligned_cols=99  Identities=11%  Similarity=0.062  Sum_probs=68.2

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC---------CC----CCCCCCcCEEEEcCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF---------PD----DDDFGSYDGYVITGSCN   69 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~---------p~----~~~~~~~d~iii~G~~~   69 (126)
                      .+||+||-.+.-...      ++.. ..+.|++.|.+++++.+..+..         |+    .....+||+++++||..
T Consensus         3 ~rkI~ilv~dG~~~~------e~~~-~~~~l~~ag~~v~ivs~~~~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~   75 (184)
T d1sy7a1           3 SRRVAIIIADGYDNV------AYDA-AYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAK   75 (184)
T ss_dssp             TCEEEEECCTTBCHH------HHHH-HHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHH
T ss_pred             ccEEEEEecCCCcHH------HHHH-HHHHHHHCCCEEEEEEecCCcccccccccccccccccccccccceEEEEeeccc
Confidence            579999988766532      1222 3467888999999887542211         11    11235799999999954


Q ss_pred             CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      ... .......+.++++++.++++|+.+||-|.++|+++-
T Consensus        76 ~~~-~~~~~~~~~~~l~~~~~~~k~i~aic~G~~~La~aG  114 (184)
T d1sy7a1          76 AAE-TLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAI  114 (184)
T ss_dssp             HHH-HHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHH
T ss_pred             ccc-ccccccchhHHHHHHHhcCCceEEechHHHHHHHcC
Confidence            321 111124578899999999999999999999999963

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.71  E-value=1.3e-08  Score=70.70  Aligned_cols=96  Identities=20%  Similarity=0.150  Sum_probs=63.9

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHh-hCCCeEEEEEccCCCC---------CC----CCCCCCcCEEEEcCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLA-EEGETWDVFHVARGEF---------PD----DDDFGSYDGYVITGSC   68 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~~---------p~----~~~~~~~d~iii~G~~   68 (126)
                      |+|++|+-.+.-.+.      +|.. +...|+ ..|.+++++.+.....         |+    ..+..+||.|+||||.
T Consensus         1 M~kv~vll~~gf~~~------E~~~-~~~~l~~~~g~~v~~vs~~~~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~   73 (188)
T d2fexa1           1 MTRIAIALAQDFADW------EPAL-LAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGL   73 (188)
T ss_dssp             CCEEEEECCTTBCTT------SSHH-HHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBS
T ss_pred             CCEEEEEeCCChhHH------HHHH-HHHHHhhcCCcEEEEEeCCCCcEEcCCCCEEeecCchHHCChhhccEEEecCCc
Confidence            679999988765431      2222 334554 4799998887653211         11    0134689999999985


Q ss_pred             CCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165           69 NDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT  108 (126)
Q Consensus        69 ~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~  108 (126)
                      ......   .+++.++++++.++++++.+||-|..+|+.+
T Consensus        74 ~~~~~~---~~~l~~~lr~~~~~~~~i~aiC~g~~~La~a  110 (188)
T d2fexa1          74 SWEKGT---AADLGGLVKRFRDRDRLVAGICAAASALGGT  110 (188)
T ss_dssp             HHHHTC---CCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred             cccccc---cHHHHHHHHHHHHhCCEEEEecchhHHHHHc
Confidence            322111   1236778899999999999999999999883

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=2.1e-07  Score=68.39  Aligned_cols=118  Identities=14%  Similarity=0.071  Sum_probs=76.0

Q ss_pred             CCeEEEEEcCCCchHHHHh----hCC----HHHHHHHHHhhCCCeEEEEEccCCCCC-------C---------------
Q 033165            3 GKKFAVLLCAEDSEYVKKK----YGG----YFGVFVRMLAEEGETWDVFHVARGEFP-------D---------------   52 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~----~~~----~~~~~~~~l~~~g~~~~~~~~~~~~~p-------~---------------   52 (126)
                      ++||||+.++...-...+.    =|-    +...+ ..|+++|+++++..+..+..+       .               
T Consensus        44 ~~kIL~V~s~~~~~~~~~g~~~~TG~~~~E~~~P~-~~l~~AG~eVdiASp~G~~~~~D~~s~~~~d~~~~~~~~~~~~~  122 (279)
T d1n57a_          44 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPL-YHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSL  122 (279)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHH-HHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHH
T ss_pred             CceEEEEEcCccccccCCCccccCccCHHHHHHHH-HHHHHCCCEEEEECCCCCCCCcCccccccccHHHHHHHHhHHHH
Confidence            5799999887754211111    021    12222 567889999999987532111       0               


Q ss_pred             -------------CCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCC-ccccCCc
Q 033165           53 -------------DDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFS-SHINASK  118 (126)
Q Consensus        53 -------------~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg-~v~~~~~  118 (126)
                                   .....+||+|+++||..... +.+....+.++++++.+.++||..||.|-.+|..+-.+ .+.+..+
T Consensus       123 ~~~~~~L~dv~~~~~~~~dYdav~iPGGhG~~~-dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~~g~~l~~Gk~  201 (279)
T d1n57a_         123 FRNPKKLADVVASLNADSEYAAIFVPGGHGALI-GLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYS  201 (279)
T ss_dssp             HHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGS-SGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCE
T ss_pred             HhCchhhhhhhhcccccccccEEEecCCccchh-hhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcccCCcccCCeE
Confidence                         01235899999999975433 34445678889999999999999999999998766433 3334444


Q ss_pred             cccc
Q 033165          119 IAGT  122 (126)
Q Consensus       119 ~~g~  122 (126)
                      +-|+
T Consensus       202 vT~f  205 (279)
T d1n57a_         202 ICAF  205 (279)
T ss_dssp             ECCC
T ss_pred             Eeec
Confidence            4443

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=8.4e-08  Score=68.93  Aligned_cols=118  Identities=15%  Similarity=0.149  Sum_probs=73.6

Q ss_pred             CCeEEEEEcCCCchHHHH--hhC----CHHHHHHHHHhhCCCeEEEEEccCCCC--------------------------
Q 033165            3 GKKFAVLLCAEDSEYVKK--KYG----GYFGVFVRMLAEEGETWDVFHVARGEF--------------------------   50 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~--~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~--------------------------   50 (126)
                      .+||||+.++.......+  .=|    ++...+ +.|++.|+++++..+.....                          
T Consensus         2 pKkvLiv~t~~~~~~~~~g~~TG~~~~E~~~P~-~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~   80 (236)
T d1qvwa_           2 PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPF-NTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDF   80 (236)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHH-HHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred             CceEEEEEcCCccccCCCCCcCcccHHHHHHHH-HHHHHCCCeEEEECCCCCCCCCcccccccccccHHHHHHhhhhHHH
Confidence            579999998753320000  001    122222 56789999999987531100                          


Q ss_pred             ---------CCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh----CCccccCC
Q 033165           51 ---------PDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITV----FSSHINAS  117 (126)
Q Consensus        51 ---------p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~----Gg~v~~~~  117 (126)
                               ++..+.++||+|+++||....+ +.+....+.++++++.+.++||.+||.|-++|+.+.    |..+...+
T Consensus        81 ~~~l~~~~~~~~v~~~~ydav~ipGG~g~~~-dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~~~~~~g~~ll~Gk  159 (236)
T d1qvwa_          81 NKTLAKIKTPKEVNADDYQIFMASAGHGTLF-DYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGK  159 (236)
T ss_dssp             HHHHHTCBCGGGCCGGGCSEEEECCSTTHHH-HGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTCSBTTTTC
T ss_pred             HHHHhcccChhhCCHhHCCEEEEeCCccchh-cchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHHhhcccccccccCc
Confidence                     0011346899999999965432 222335677899999999999999999999887642    33344455


Q ss_pred             ccccc
Q 033165          118 KIAGT  122 (126)
Q Consensus       118 ~~~g~  122 (126)
                      ++-|+
T Consensus       160 ~vT~f  164 (236)
T d1qvwa_         160 SITGF  164 (236)
T ss_dssp             EECCS
T ss_pred             eeccC
Confidence            54443

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=2.8e-07  Score=64.14  Aligned_cols=97  Identities=22%  Similarity=0.183  Sum_probs=64.0

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC---------C---CC----CCCCCCcCEEEEcCC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE---------F---PD----DDDFGSYDGYVITGS   67 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~---------~---p~----~~~~~~~d~iii~G~   67 (126)
                      +|.+|+-...-++. +     +.. -.+.|++.|++++++.+....         +   |+    .....+||+|++|||
T Consensus         2 ~~ali~l~~Gfe~~-E-----~~~-p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG   74 (195)
T d2ab0a1           2 ASALVCLAPGSEET-E-----AVT-TIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGG   74 (195)
T ss_dssp             CEEEEEECTTCCHH-H-----HHH-HHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCC
T ss_pred             ceEEEEecCCccHH-H-----HHH-HHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccc
Confidence            57888887655432 1     111 236788899999888764221         0   10    002468999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH-HHHHHHH
Q 033165           68 CNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG-HQVRAIT  108 (126)
Q Consensus        68 ~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G-~Q~la~~  108 (126)
                      .... +.....+.+.++++++.++++|+.+||.| ..+|+++
T Consensus        75 ~~~~-~~l~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~a  115 (195)
T d2ab0a1          75 IKGA-ECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH  115 (195)
T ss_dssp             HHHH-HHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred             cCcc-ccccccHHHHHHHHHHhhccceeeeeeccchhhhhhc
Confidence            5322 11111255778999999999999999999 6888775

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.47  E-value=0.00028  Score=49.65  Aligned_cols=98  Identities=13%  Similarity=0.080  Sum_probs=65.3

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-hHHH-H
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-VWIC-K   80 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-~~~~-~   80 (126)
                      .+||+++=+-...+    .++.|...+.+.++..+.+++.++... + + .+.+++.|+|+++||.  ...-. .|.. .
T Consensus        31 ~~~i~~IPtAs~~~----~~~~y~~~~~~~~~~l~~~v~~l~~~~-~-~-~~~l~~ad~I~v~GGn--~~~l~~~l~~t~  101 (229)
T d1fyea_          31 RRSAVFIPFAGVTQ----TWDEYTDKTAEVLAPLGVNVTGIHRVA-D-P-LAAIEKAEIIIVGGGN--TFQLLKESRERG  101 (229)
T ss_dssp             CCEEEEECTTCCSS----CHHHHHHHHHHHHGGGTCEEEEGGGSS-C-H-HHHHHHCSEEEECCSC--HHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCC----chhHHHHHHHHHhhhcCceeEEecccc-c-H-HHHHhhCCEEEEcCCC--HHHHHHHHHhCC
Confidence            36899985543222    234588888888988888776654322 1 1 1356889999999992  21111 2322 2


Q ss_pred             HHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165           81 LIALLKQLDSLRKKVLGICFGHQVRAITV  109 (126)
Q Consensus        81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~  109 (126)
                      +.+.|+++++++.++.|.-.|+-+++...
T Consensus       102 l~~~l~~~~~~G~vi~G~SAGA~v~~~~~  130 (229)
T d1fyea_         102 LLAPMADRVKRGALYIGWSAGANLACPTI  130 (229)
T ss_dssp             CHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred             HHHHHHHHHHcCCeEEEeChhHhhcCccc
Confidence            56788888889999999999988776433

>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: ThuA-like
domain: GK2113 homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.27  E-value=0.016  Score=40.37  Aligned_cols=95  Identities=17%  Similarity=0.081  Sum_probs=55.1

Q ss_pred             CCeEEEEEc---CCCchHHHHhh-CCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCCCCchH
Q 033165            3 GKKFAVLLC---AEDSEYVKKKY-GGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHGNDVW   77 (126)
Q Consensus         3 ~~ki~Il~~---~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~~~~~~   77 (126)
                      .+||+|..-   +...+.+..-| ..+...+...|++.++++++....++. ....+.|.+||.||+.+.....    .+
T Consensus         2 p~rvlv~~~~~He~~~~~v~~i~p~g~~~~ia~~l~~~g~~v~tat~~e~~~~~~~~~L~~~Dvli~~~~~~~~----~l   77 (240)
T d1t0ba_           2 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAHD----EV   77 (240)
T ss_dssp             CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCGG----GS
T ss_pred             CeEEEEECCccccccchhhhhhCcccHHHHHHHHhhcCCceEEEEEecCccccCCHHHHhcCCEEEEeCCCCCC----cC
Confidence            578888852   11111111111 224456778888899999876654321 1123467899999986542211    11


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEchH
Q 033165           78 ICKLIALLKQLDSLRKKVLGICFG  101 (126)
Q Consensus        78 ~~~~~~~i~~~~~~~~PvlGIC~G  101 (126)
                      .....+.+.+.++++++++|+=-+
T Consensus        78 ~~~q~~al~~~v~~G~G~VglH~a  101 (240)
T d1t0ba_          78 KDEVVERVHRRVLEGMGLIVLHSG  101 (240)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEEGGG
T ss_pred             CHHHHHHHHHHHHcCCCEEEEecC
Confidence            133445567777899999998544

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.06  E-value=0.045  Score=39.51  Aligned_cols=84  Identities=12%  Similarity=0.174  Sum_probs=50.0

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC------C---------------CCCCCCCcCEE
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF------P---------------DDDDFGSYDGY   62 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~------p---------------~~~~~~~~d~i   62 (126)
                      +||+|+-+...+...+     ....+.++|.+.|.++.+......+.      |               ..+..+++|.+
T Consensus         1 r~v~lv~~~~k~~a~~-----~a~~i~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlv   75 (302)
T d1u0ta_           1 RSVLLVVHTGRDEATE-----TARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELV   75 (302)
T ss_dssp             CEEEEEESSSGGGGSH-----HHHHHHHHHHTTTCEEEEEC-----------------------------------CCCE
T ss_pred             CEEEEEEeCCCHHHHH-----HHHHHHHHHHHCCCEEEEEecchhcccccccCchhhhhcCcccccccccccccccccEE
Confidence            4788887766654322     34567889999998887653211000      0               01123568999


Q ss_pred             EEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165           63 VITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        63 ii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~  102 (126)
                      |..||-          ..+...++.+...++|+|||=.|.
T Consensus        76 i~lGGD----------GT~L~a~~~~~~~~~PilGin~G~  105 (302)
T d1u0ta_          76 LVLGGD----------GTFLRAAELARNASIPVLGVNLGR  105 (302)
T ss_dssp             EEEECH----------HHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEcCC----------hHHHHHHHHhhccCCeEEEeCCCc
Confidence            999992          334455566655689999998873

>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.73  E-value=0.078  Score=37.24  Aligned_cols=72  Identities=17%  Similarity=0.265  Sum_probs=48.6

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA   83 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~   83 (126)
                      ||++|+......          ...+.+.|++.+.+++.++.     +. ++++++|.+|..||-          ..+..
T Consensus         1 mr~~iv~k~d~~----------~k~i~e~l~~~~~~~~~~~~-----~~-~~~~~~D~vi~iGGD----------GT~L~   54 (249)
T d1z0sa1           1 MRAAVVYKTDGH----------VKRIEEALKRLEVEVELFNQ-----PS-EELENFDFIVSVGGD----------GTILR   54 (249)
T ss_dssp             CEEEEEESSSTT----------HHHHHHHHHHTTCEEEEESS-----CC-GGGGGSSEEEEEECH----------HHHHH
T ss_pred             CeEEEEECCchh----------HHHHHHHHHhcCCeEEEecC-----cc-ccccCCCEEEEECCc----------HHHHH
Confidence            588888654432          23467788888988887642     22 246789999999992          22333


Q ss_pred             HHHHHHhcCCcEEEEchHH
Q 033165           84 LLKQLDSLRKKVLGICFGH  102 (126)
Q Consensus        84 ~i~~~~~~~~PvlGIC~G~  102 (126)
                      .++. ++..+|++||=.|.
T Consensus        55 a~~~-~~~~~PilGIn~G~   72 (249)
T d1z0sa1          55 ILQK-LKRCPPIFGINTGR   72 (249)
T ss_dssp             HHTT-CSSCCCEEEEECSS
T ss_pred             HHHH-hcCCCcEEEECccc
Confidence            4443 34568999998874

>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Flavodoxin FldA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.48  E-value=0.064  Score=35.82  Aligned_cols=58  Identities=22%  Similarity=0.205  Sum_probs=34.7

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPDDDDFGSYDGYVITGSCN   69 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~   69 (126)
                      |.||+|+.....- ++++    -...+.+-+++ .|.+++++++.+-   ..+++.++|+|+| |+|.
T Consensus         1 M~kilivy~S~~G-~T~~----~A~~ia~g~~~~~g~~v~~~~~~~~---~~~dl~~~d~iii-GsPt   59 (184)
T d2arka1           1 MGKVLVIYDTRTG-NTKK----MAELVAEGARSLEGTEVRLKHVDEA---TKEDVLWADGLAV-GSPT   59 (184)
T ss_dssp             CEEEEEEECCSSS-HHHH----HHHHHHHHHHTSTTEEEEEEETTTC---CHHHHHHCSEEEE-EEEC
T ss_pred             CCeEEEEEECCCc-HHHH----HHHHHHHhhhhccCceEEEeecccc---cccchhhCcEEEE-ecCc
Confidence            6789999886653 2221    11223333334 5788888887532   2236789999988 5543

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=90.85  E-value=0.39  Score=30.09  Aligned_cols=91  Identities=11%  Similarity=0.099  Sum_probs=47.5

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC-CCCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP-DDDDFGSYDGYVITGSCNDAHGNDVWICKL   81 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p-~~~~~~~~d~iii~G~~~~~~~~~~~~~~~   81 (126)
                      ++||+|+.....- +++.    -...+.+.++..|.+++++++.+.+.. ...++.++|++++.-..+. ....+-+..+
T Consensus         2 ~~Ki~IiY~S~tG-nTe~----~A~~Ia~~l~~~g~ev~~~~~~~~~~~~~~~~l~~~d~vi~Gspt~~-~~~~~~~~~~   75 (152)
T d1e5da1           2 TNKVVIFYDSMWH-STEK----MARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHN-NGILPYVAGT   75 (152)
T ss_dssp             CSEEEEEECCSSS-HHHH----HHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBT-TBCCHHHHHH
T ss_pred             CCeEEEEEECCCc-HHHH----HHHHHHHHHhhCCCEEEEeecccCChhhhccchhhCCEEEEeccccC-CccCchhHHH
Confidence            5789999865432 2221    233455666778999999987643210 0113467998887544322 1222333333


Q ss_pred             HHHHHHHHhcCCcEEEEc
Q 033165           82 IALLKQLDSLRKKVLGIC   99 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC   99 (126)
                      .+.+....-.++++...+
T Consensus        76 l~~~~~~~~~~k~~~~fg   93 (152)
T d1e5da1          76 LQYIKGLRPQNKIGGAFG   93 (152)
T ss_dssp             HHHHHHTCCCSCEEEEEE
T ss_pred             HHHhhccCCCCCEEEEEE
Confidence            333333222467764443

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.74  E-value=0.86  Score=28.29  Aligned_cols=60  Identities=20%  Similarity=0.200  Sum_probs=38.7

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCCCCCcCEEEEcCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDDFGSYDGYVITGS   67 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~~~~~d~iii~G~   67 (126)
                      +.||+|+.....- +++.    ....+.+.+++.|.+++++++...+.+.    ..++.+||++++.-.
T Consensus         3 ~~kv~IiY~S~tG-nTe~----~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~d~iiigsp   66 (148)
T d1vmea1           3 KGKVTVIYDSMYG-FVEN----VMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVS   66 (148)
T ss_dssp             TTEEEEEEECSSS-HHHH----HHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEEC
T ss_pred             CCEEEEEEECCCc-HHHH----HHHHHHHHHHhCCCeEEEEecccccccchhHhhhhHHHCCEeEEEec
Confidence            4689999776542 2222    3445667778889999999876433221    124678998887543

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

Probab=90.36  E-value=0.22  Score=31.21  Aligned_cols=91  Identities=13%  Similarity=0.002  Sum_probs=47.3

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGNDVWICKL   81 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~~~~~~~   81 (126)
                      +.|++|+.....- +++.    -...+.+.+++.|.+++++++...+... ..++.+||+||+. +|--...-.+.+..+
T Consensus         2 k~K~lIvY~S~~G-nT~~----vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~G-spt~~g~~~~~~~~~   75 (149)
T d1ycga1           2 KAKAVIAYDTMWL-STEK----MAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVG-SPTINNDILPVVSPL   75 (149)
T ss_dssp             CSEEEEEECCSSS-HHHH----HHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEE-CCCBTTBCCGGGHHH
T ss_pred             CcEEEEEEECCCc-HHHH----HHHHHHHHHHhcCCeeEEEEccccchHHHhhhhhhCCeEEEE-eecccCCCCHHHHHH
Confidence            4689999865432 2222    2334566667789999999876432100 0123568888864 442111222334444


Q ss_pred             HHHHHHHHhcCCcEEEEc
Q 033165           82 IALLKQLDSLRKKVLGIC   99 (126)
Q Consensus        82 ~~~i~~~~~~~~PvlGIC   99 (126)
                      .+.+....-.++++..+|
T Consensus        76 l~~l~~~~~~~k~~~~fg   93 (149)
T d1ycga1          76 LDDLVGLRPKNKVGLAFG   93 (149)
T ss_dssp             HHHHHHHCCSSCEEEEEE
T ss_pred             HHHHhccccCCCEEEEEe
Confidence            444443322456655443

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.47  E-value=0.47  Score=29.64  Aligned_cols=43  Identities=14%  Similarity=-0.044  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV   45 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~   45 (126)
                      .+|++||-.++-.-..-.++|-........|++.|.++-.++.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~   46 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNC   46 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEec
Confidence            4789999887765321122222223445677888998888764

>d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus horikoshii, PH1647 [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Pyrococcus horikoshii, PH1647 [TaxId: 53953]

Probab=87.91  E-value=0.32  Score=31.01  Aligned_cols=67  Identities=13%  Similarity=0.001  Sum_probs=42.2

Q ss_pred             CCeEEEEEcCCCc-----hHH-H--HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCC
Q 033165            3 GKKFAVLLCAEDS-----EYV-K--KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCN   69 (126)
Q Consensus         3 ~~ki~Il~~~~~~-----~~~-~--~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~   69 (126)
                      ++||+|+-++.+-     +.. .  +-|++...++..++++.|.++..+.+..++....     +.++++|.||.+||.+
T Consensus         2 kPrV~iistG~Elv~~~~~~~~~~g~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~DlvIttGG~s   81 (144)
T d1wu2a3           2 KPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSA   81 (144)
T ss_dssp             CCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC----
T ss_pred             CCEEEEEcCChhhcCCCCcCCCCCCcEeecCchHHhhhhcccCcceeEEEEecchHHHHHHHHHHhhhcccEEEEccccc
Confidence            5799999987653     111 1  1267888899999999999887776554431110     0135799999999864

>d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Hypothetical protein MTH538
family: Hypothetical protein MTH538
domain: Hypothetical protein MTH538
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.57  E-value=0.35  Score=29.74  Aligned_cols=40  Identities=8%  Similarity=-0.018  Sum_probs=28.8

Q ss_pred             CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165           55 DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC   99 (126)
Q Consensus        55 ~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC   99 (126)
                      .+++.|.+|++.|....  ..+|+..+   |+.+.+.++|++||=
T Consensus        35 ~~~~~~vvIVL~G~yt~--~r~WI~~E---I~~A~~~~KpIIgV~   74 (111)
T d1eiwa_          35 TPEDADAVIVLAGLWGT--RRDEILGA---VDLARKSSKPIITVR   74 (111)
T ss_dssp             CSSSCSEEEEEGGGTTT--SHHHHHHH---HHHHTTTTCCEEEEC
T ss_pred             cccCCCEEEEEeecccc--CCHHHHHH---HHHHHHcCCCeEEEE
Confidence            35788999999886543  34687765   445556799999984

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=86.22  E-value=2  Score=25.19  Aligned_cols=61  Identities=18%  Similarity=0.056  Sum_probs=36.9

Q ss_pred             CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165            1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT   65 (126)
Q Consensus         1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~   65 (126)
                      |+. ||+||.-+...+...+-..  ...+.+.|.+.+.++..+.+.+..+... ...++|.++..
T Consensus         1 M~~-kI~vl~GG~S~E~~iSl~S--a~~v~~~L~~~~~~v~~i~~~~~~~~~~-~~~~~d~vF~~   61 (96)
T d1iowa1           1 MTD-KIAVLLGGTSAEREVSLNS--GAAVLAGLREGGIDAYPVDPKEVDVTQL-KSMGFQKVFIA   61 (96)
T ss_dssp             CCC-EEEEECCCSSTTHHHHHHH--HHHHHHHHHHTTCEEEEECTTTSCGGGT-TTTTEEEEEEC
T ss_pred             CCc-eEEEEeCcCchhhHhHHhh--HHHHHHHHHHcCeeEeeecCccccchhh-hccCceeEEEe
Confidence            444 8999988777763222110  2346678888899888877654432221 23467876664

>d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Hypothetical protein Ylr011wp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.22  E-value=0.42  Score=31.26  Aligned_cols=37  Identities=5%  Similarity=0.085  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHH----HHhh------CCCeEEEEEccC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVR----MLAE------EGETWDVFHVAR   47 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~----~l~~------~g~~~~~~~~~~   47 (126)
                      |||++|...+..       ++++..+.+    .+++      .|.+++++++.+
T Consensus         1 MKIlvI~GS~R~-------~s~~~~la~~~~~~l~~~~~~~~~g~~v~~idL~~   47 (185)
T d1t0ia_           1 MKVGIIMGSVRA-------KRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQ   47 (185)
T ss_dssp             CEEEEEECCCCS-------SCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHH
T ss_pred             CEEEEEeCCCCC-------CChHHHHHHHHHHHHHHhhhhcCCCcEEEEEeccc
Confidence            699999877643       345554443    4443      378899887653

>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: Gephyrin, domain 5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.09  E-value=0.22  Score=32.01  Aligned_cols=67  Identities=12%  Similarity=0.049  Sum_probs=43.5

Q ss_pred             CeEEEEEcCCCchH------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCC
Q 033165            4 KKFAVLLCAEDSEY------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCND   70 (126)
Q Consensus         4 ~ki~Il~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~   70 (126)
                      +||+|+-++..--.      .-+-|++-..++..++++.|.++..+....|+....     +.++++|.||.+||.+.
T Consensus         1 PrV~iistG~El~~~~~~~~~g~i~dsN~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliittGG~s~   78 (155)
T d2ftsa3           1 PVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSM   78 (155)
T ss_dssp             CCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCSS
T ss_pred             CEEEEEeCChhccCCCCcCCCCcEeechHHHHHHHhcccccceEEEEEecCchhHHHHHHHHhhcccCEEEEeccccC
Confidence            47888888764311      112256777889999999999887766554431110     11357999999999653

>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]

Probab=85.08  E-value=0.17  Score=32.45  Aligned_cols=67  Identities=19%  Similarity=0.108  Sum_probs=42.5

Q ss_pred             CeEEEEEcCCCch------HHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCC
Q 033165            4 KKFAVLLCAEDSE------YVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCND   70 (126)
Q Consensus         4 ~ki~Il~~~~~~~------~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~   70 (126)
                      +||+|+-++..--      .--+-|++-...+..++++.|.++..+....++....     ..++++|.||++||.+.
T Consensus         1 Prv~iistG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DliIttGG~s~   78 (148)
T d1uz5a3           1 PKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGASG   78 (148)
T ss_dssp             CEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC--
T ss_pred             CEEEEEeCChhhcCCCCcCCCCCEeeCChHHHHHhhhcccccceeeeeeccHHHHHHHHHHhhhccccEEEECCCccc
Confidence            4888888766421      1112357778889999999999887666553321110     12357899999999643

>d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Azobenzene reductase
species: Bacillus subtilis [TaxId: 1423]

Probab=84.99  E-value=0.63  Score=29.70  Aligned_cols=86  Identities=13%  Similarity=0.025  Sum_probs=48.6

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC----------------CCCCCcCEEEEcCC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD----------------DDFGSYDGYVITGS   67 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~----------------~~~~~~d~iii~G~   67 (126)
                      |||++|...+..       ++++..+.+++.+ +.+++++++.+.++|.-                +.+.++|++|+.--
T Consensus         1 MKIl~I~GS~r~-------~s~t~~l~~~~~~-~~~~~~idl~~~~lp~~~~~~~~~~~~~~~~l~~~i~~aD~vIi~sP   72 (171)
T d1nni1_           1 MNMLVINGTPRK-------HGRTRIAASYIAA-LYHTDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSP   72 (171)
T ss_dssp             CCEEEEECCCCT-------TCHHHHHHHHHHH-HHTCEEEETTTSCCCCCCCCHHHHTSHHHHHHHHHHHHCSEEEEEEE
T ss_pred             CEEEEEECCCCC-------cChHHHHHHHHHh-hCCceEEEcccCCCCCccccccccccHHHHHHHHHhhccCceEEech
Confidence            689999776553       3667777777643 45677787754333321                12357899987522


Q ss_pred             CCCCCCCchHHHHHHHHHHH-HHhcCCcEEEEc
Q 033165           68 CNDAHGNDVWICKLIALLKQ-LDSLRKKVLGIC   99 (126)
Q Consensus        68 ~~~~~~~~~~~~~~~~~i~~-~~~~~~PvlGIC   99 (126)
                      -++ +.-...+..+.+++-. .+ .++|+..++
T Consensus        73 ~Y~-~~~~~~lKn~iD~~~~~~~-~~K~~~~~~  103 (171)
T d1nni1_          73 EYH-SGMSGALKNALDFLSSEQF-KYKPVALLA  103 (171)
T ss_dssp             CBT-TBCCHHHHHHHHHCCHHHH-TTCEEEEEE
T ss_pred             HHh-cccchhHhHHHHHhccccc-CCCeEEEEE
Confidence            211 1112344555555532 22 578877666

>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

Probab=84.99  E-value=0.66  Score=30.51  Aligned_cols=39  Identities=10%  Similarity=0.025  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA   46 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~   46 (126)
                      .|||+|+.....- +...    -.+.+.+-+++.|.+++++++.
T Consensus         2 ~mkilivy~S~~G-nT~~----la~~ia~g~~~~G~ev~~~~~~   40 (201)
T d1ydga_           2 PVKLAIVFYSSTG-TGYA----MAQEAAEAGRAAGAEVRLLKVR   40 (201)
T ss_dssp             CCEEEEEECCSSS-HHHH----HHHHHHHHHHHTTCEEEEEECC
T ss_pred             CcEEEEEEeCCCc-HHHH----HHHHHHHHHHhcCCEEEEEEcc
Confidence            5899999876432 2111    1233555566789999999875

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=84.35  E-value=1.5  Score=25.06  Aligned_cols=74  Identities=16%  Similarity=0.138  Sum_probs=44.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-----CCC----------CCCCCCcCEEEEcCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-----FPD----------DDDFGSYDGYVITGS   67 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-----~p~----------~~~~~~~d~iii~G~   67 (126)
                      .+||+|+-.+..-           .-..++|.+.|.++.+++-....     +..          ...+.++|.+|++.|
T Consensus         5 ~K~v~ViGlG~sG-----------~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPG   73 (93)
T d2jfga1           5 GKNVVIIGLGLTG-----------LSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPG   73 (93)
T ss_dssp             TCCEEEECCSHHH-----------HHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTT
T ss_pred             CCEEEEEeECHHH-----------HHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCC
Confidence            4678888554431           12467888889999888743211     000          001247788888766


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHhcCCcEEE
Q 033165           68 CNDAHGNDVWICKLIALLKQLDSLRKKVLG   97 (126)
Q Consensus        68 ~~~~~~~~~~~~~~~~~i~~~~~~~~PvlG   97 (126)
                      -.   .+.       .+++.+.++++||.|
T Consensus        74 i~---~~~-------~~~~~a~~~gi~iiG   93 (93)
T d2jfga1          74 IA---LAH-------PSLSAAADAGIEIVG   93 (93)
T ss_dssp             SC---TTS-------HHHHHHHHTTCEEEC
T ss_pred             CC---CCC-------HHHHHHHHcCCCeEC
Confidence            31   122       245667778999987

>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: Quinone reductase type 2 (menadione reductase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.18  E-value=1.1  Score=29.76  Aligned_cols=41  Identities=22%  Similarity=0.337  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHH----HHHhhCCCeEEEEEccCCCC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFV----RMLAEEGETWDVFHVARGEF   50 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~----~~l~~~g~~~~~~~~~~~~~   50 (126)
                      .|||+||...+..       +||+..+.    +.+++.|.+++++++++..+
T Consensus         2 ~mKiLiI~ghp~~-------~S~t~~l~~~~~~~~~~~g~ev~~~dL~~~~~   46 (230)
T d2qwxa1           2 GKKVLIVYAHQEP-------KSFNGSLKNVAVDELSRQGCTVTVSDLYAMNF   46 (230)
T ss_dssp             CCEEEEEECCSCT-------TSHHHHHHHHHHHHHHHTTCEEEEEETTTTTC
T ss_pred             CCEEEEEEeCCCC-------ccHHHHHHHHHHHHHHhCCCEEEEEEccccCC
Confidence            5899999876643       35565544    44567899999999876543

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=81.43  E-value=3.3  Score=25.17  Aligned_cols=53  Identities=15%  Similarity=0.073  Sum_probs=28.5

Q ss_pred             CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165            4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS   67 (126)
Q Consensus         4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~   67 (126)
                      |||++........+          .+.++.++.+.++..+.....+ ...+.+.++|+|++.+.
T Consensus         1 MKIl~~~~~~~e~~----------~l~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~d~ii~~~~   53 (131)
T d1dxya2           1 MKIIAYGARVDEIQ----------YFKQWAKDTGNTLEYHTEFLDE-NTVEWAKGFDGINSLQT   53 (131)
T ss_dssp             CEEEECSCCTTTHH----------HHHHHHHHHCCEEEECSSCCCT-TGGGGGTTCSEEEECCS
T ss_pred             CEEEEEecCcCcHH----------HHHHHHHHcCeEEEEcCCCCCH-HHHHHhcCCCEEEEecC
Confidence            58877654443221          2445555667776654422111 11124578999998655

>d1ehsa_ g.2.1.1 (A:) Heat-stable enterotoxin B {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Toxic hairpin
superfamily: Heat-stable enterotoxin B
family: Heat-stable enterotoxin B
domain: Heat-stable enterotoxin B
species: Escherichia coli [TaxId: 562]

Probab=80.32  E-value=0.11  Score=26.38  Aligned_cols=17  Identities=29%  Similarity=0.489  Sum_probs=13.3

Q ss_pred             cEEEEchHHHHHHHHhC
Q 033165           94 KVLGICFGHQVRAITVF  110 (126)
Q Consensus        94 PvlGIC~G~Q~la~~~G  110 (126)
                      -..|-|||.|++..+-|
T Consensus        31 gtagacfgaqimvaakg   47 (48)
T d1ehsa_          31 GTAGACFGAQIMVAAKG   47 (48)
T ss_dssp             SSCCTTTTTHHHHTTTT
T ss_pred             CccccccchhHhhhccc
Confidence            36788999999987654

>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: AI-2 receptor LsrB
species: Salmonella typhi [TaxId: 90370]

Probab=80.29  E-value=1.5  Score=29.41  Aligned_cols=83  Identities=12%  Similarity=0.005  Sum_probs=45.8

Q ss_pred             CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCC-----CCCcCEEEEcCCCCCCCCCc
Q 033165            2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDD-----FGSYDGYVITGSCNDAHGND   75 (126)
Q Consensus         2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~-----~~~~d~iii~G~~~~~~~~~   75 (126)
                      +.+||+++-....++....    ...-+.+..++.|.++.++.....+... .+.     -.++|+||+.+.....    
T Consensus         2 ~~~kI~~i~~~~~npf~~~----~~~g~~~~a~~~G~~v~~~~~~~~d~~~q~~~i~~~i~~~~dgIIi~~~~~~~----   73 (316)
T d1tjya_           2 SAERIAFIPKLVGVGFFTS----GGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDG----   73 (316)
T ss_dssp             CCCEEEEECSSSSSHHHHH----HHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSST----
T ss_pred             CCCEEEEEeCCCCCHHHHH----HHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHhcCCCeeeecccccch----
Confidence            3579999987777664222    2233556667778887765433221100 000     1479999998763221    


Q ss_pred             hHHHHHHHHHHHHHhcCCcEEE
Q 033165           76 VWICKLIALLKQLDSLRKKVLG   97 (126)
Q Consensus        76 ~~~~~~~~~i~~~~~~~~PvlG   97 (126)
                           ....++++.+.++|+..
T Consensus        74 -----~~~~~~~a~~~gi~vv~   90 (316)
T d1tjya_          74 -----LCPALKRAMQRGVKILT   90 (316)
T ss_dssp             -----THHHHHHHHHTTCEEEE
T ss_pred             -----hhhhhhhhhccccccee
Confidence                 12234455556677654

>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.15  E-value=0.94  Score=29.25  Aligned_cols=59  Identities=14%  Similarity=0.111  Sum_probs=34.7

Q ss_pred             CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC---------------CC-CCCCCCCCcCEEEEcC
Q 033165            3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG---------------EF-PDDDDFGSYDGYVITG   66 (126)
Q Consensus         3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~---------------~~-p~~~~~~~~d~iii~G   66 (126)
                      ++||+|+.....- ++..    -...+.+-+++.|.+++++++...               +. +..+++.++|+||+..
T Consensus         1 ~~Kvliiy~S~~G-nT~~----la~~i~~g~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~ii~gs   75 (196)
T d2a5la1           1 SPYILVLYYSRHG-ATAE----MARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGS   75 (196)
T ss_dssp             CCEEEEEECCSSS-HHHH----HHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEE
T ss_pred             CCeEEEEEeCCCc-HHHH----HHHHHHHHHhhcCCEEEEEeccccchHHHHhccccccccccccchhhhhhcCEEEEec
Confidence            3699999886432 2111    122344455668999999887521               00 1123457899999853