Citrus Sinensis ID: 033200

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MAATSVCVAGLSSSFHGSWGASFANGGEEYRMLARSVPNVRVARPIRMQPMMGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA
Secondary Structure (PSIPRED)
ccccEEEEcccccccccccccEEEcccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccccEEEccccccEEEEccccccccccccccccHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEccc
Coil and Loop (DISEMBL)
MAATSVCVAglsssfhgswgasfanggEEYRMLARsvpnvrvarpirmqpmmgninegkgifAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNgerlgfla
Flexible Loop (DISEMBL)
MAATSVCVaglsssfhgswGASFANGGEEYRMLARSVPNVRVARPIRMQPMMGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRlakkngerlgfla
Low Complexity Region (SEG)
MAATSVCVAGLSSSFHGSWGASFANGGEEYRMLARSVPNVRVARPIRMQPMMGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA
Disordered region (IsUnstruct)
*****VCVAGLSSSFHGSWGASFANGGEEYRMLARSVPNVRVARPIRMQPMMGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIR*************
Disordered Region (DISOPRED)
**********LSSSFHGSWGA*FA***********************************GIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA
Disordered Region (DISEMBL)
********AGLSSSFHGSWGASFANGGEEYRMLARSVPNVRVARPIRMQPMMGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA
Disordered Region (DISPRO)
**ATSVCVAGLSSSFHGSWGASFANGGEEYRMLARSV*********************KGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAATSVCVAGLSSSFHGSWGASFANGGEEYRMLARSVPNVRVARPIRMQPMMGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q9SL05	133	Protein PROTON GRADIENT R	yes	no	0.984	0.924	0.666	3e-42

>sp|Q9SL05|PGR5_ARATH Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana GN=PGR5 PE=1 SV=1

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/135 (66%), Positives = 108/135 (80%), Gaps = 12/135 (8%)

Query: 1   MAATSVCVAG-----LSSSFHGSWGASFANGGEEYR-MLARSVP---NVRVAR-PIRMQP 50
           MAA S+   G     + +SF+G WG+S +  GE+Y+ ML+++V      RV+R  IR  P
Sbjct: 1   MAAASISAIGCNQTLIGTSFYGGWGSSIS--GEDYQTMLSKTVAPPQQARVSRKAIRAVP 58

Query: 51  MMGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGL 110
           MM N+NEGKG+FAP+VV+TRN++GKKRFNQ RGKAIALHSQVITEFCKSIGADAKQRQGL
Sbjct: 59  MMKNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGL 118

Query: 111 IRLAKKNGERLGFLA 125
           IRLAKKNGERLGFLA
Sbjct: 119 IRLAKKNGERLGFLA 133

Involved in the regulation of the cyclic electron flow (CEF) around Photosystem I. Essential for photoprotection.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
225433241	128	PREDICTED: protein PROTON GRADIENT REGUL	0.968	0.945	0.759	1e-47
357439761	127	Protein PROTON GRADIENT REGULATION [Medi	0.968	0.952	0.726	2e-45
449432514	127	PREDICTED: protein PROTON GRADIENT REGUL	0.968	0.952	0.742	3e-45
359807216	126	uncharacterized protein LOC100782797 [Gl	0.968	0.960	0.740	4e-45
351725387	126	uncharacterized protein LOC100500247 [Gl	0.968	0.960	0.740	1e-44
224099975	127	predicted protein [Populus trichocarpa]	0.968	0.952	0.710	2e-44
388507314	124	unknown [Lotus japonicus]	0.96	0.967	0.746	3e-44
255574925	121	conserved hypothetical protein [Ricinus	0.952	0.983	0.725	5e-44
224107497	127	predicted protein [Populus trichocarpa]	0.912	0.897	0.752	8e-44
449458862	127	PREDICTED: protein PROTON GRADIENT REGUL	0.984	0.968	0.720	4e-43

>gi|225433241|ref|XP_002285437.1| PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic isoform 1 [Vitis vinifera] gi|359477683|ref|XP_003632009.1| PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic isoform 2 [Vitis vinifera] gi|296083717|emb|CBI23706.3| unnamed protein product [Vitis vinifera]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/129 (75%), Positives = 108/129 (83%), Gaps = 8/129 (6%)

Query: 3   ATSVCVAGL-----SSSFHGSWGASFANGGEEYRMLARSV-PNVRVARPIRMQPMMGNIN 56
           ATSVC  G      +SSFHGSWG S A  GE+Y  LARSV  NV V +P+R++PMM N+N
Sbjct: 2   ATSVCATGFKGGLCTSSFHGSWGTSMA--GEDYAALARSVRTNVPVGKPVRLRPMMKNVN 59

Query: 57  EGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKK 116
           EGKG+FAP+VV+TRNIIGKK FNQ RGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKK
Sbjct: 60  EGKGLFAPIVVVTRNIIGKKTFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKK 119

Query: 117 NGERLGFLA 125
           NGERLGFLA
Sbjct: 120 NGERLGFLA 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439761|ref|XP_003590158.1| Protein PROTON GRADIENT REGULATION [Medicago truncatula] gi|355479206|gb|AES60409.1| Protein PROTON GRADIENT REGULATION [Medicago truncatula] gi|388520495|gb|AFK48309.1| unknown [Medicago truncatula]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/128 (72%), Positives = 108/128 (84%), Gaps = 7/128 (5%)

Query: 3   ATSVCVAG-LSSSFHGSWGASFANGGEEYRMLARSVPNV----RVARPIRMQPMMGNINE 57
           ATS+   G + SSF+GSWG S    GE+Y MLA+SV +     RV++P+R+QPMM N+NE
Sbjct: 2   ATSISATGCVGSSFYGSWGTSIV--GEDYTMLAKSVSSQLRIGRVSKPVRLQPMMKNVNE 59

Query: 58  GKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKN 117
           GKGIFAP+VV+TR+I+GKKRFNQ RGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKN
Sbjct: 60  GKGIFAPLVVVTRDIVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKN 119

Query: 118 GERLGFLA 125
           GE LGFLA
Sbjct: 120 GEWLGFLA 127

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432514|ref|XP_004134044.1| PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucumis sativus] gi|449486661|ref|XP_004157360.1| PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucumis sativus]

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 95/128 (74%), Positives = 106/128 (82%), Gaps = 7/128 (5%)

Query: 3   ATSVCVAGL----SSSFHGSWGASFANGGEEYRMLARSVPNV-RVARPIRMQPMMGNINE 57
           ATS+   GL    SSSFHG WG S    G+   +L +SVP+V RVA+P+R +PMM NINE
Sbjct: 2   ATSISATGLHKPLSSSFHGGWGTSIC--GDNSIVLIKSVPDVVRVAKPVRFRPMMKNINE 59

Query: 58  GKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKN 117
           GKG+FAPVVVL RNIIGKKRFNQ RGKAIALHSQ+ITEFCKSIGADAKQRQGLIRLAKKN
Sbjct: 60  GKGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKN 119

Query: 118 GERLGFLA 125
           GE+LGFLA
Sbjct: 120 GEKLGFLA 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807216|ref|NP_001241362.1| uncharacterized protein LOC100782797 [Glycine max] gi|255647319|gb|ACU24126.1| unknown [Glycine max]

 Score =  184 bits (468), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 108/127 (85%), Gaps = 6/127 (4%)

Query: 3   ATSVCVAG-LSSSFHGSWGASFANGGEEYRMLARSVPN-VRVAR--PIRMQPMMGNINEG 58
           ATS+   G + +SF+GSWG S    GE+Y MLA+SVP+ VR+ R  P+R+QPMM N+NEG
Sbjct: 2   ATSLSATGCVGTSFYGSWGTSIV--GEDYTMLAKSVPSQVRMGRGKPVRLQPMMKNVNEG 59

Query: 59  KGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNG 118
           KGIFAP+VV+TRNI+GKKRFNQ RGKAIALHSQVITEFCKSIGAD KQRQGLIRLAKKNG
Sbjct: 60  KGIFAPLVVITRNIVGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 119

Query: 119 ERLGFLA 125
           E LGFLA
Sbjct: 120 EWLGFLA 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725387|ref|NP_001235299.1| uncharacterized protein LOC100500247 [Glycine max] gi|255629835|gb|ACU15268.1| unknown [Glycine max]

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 107/127 (84%), Gaps = 6/127 (4%)

Query: 3   ATSVCVAG-LSSSFHGSWGASFANGGEEYRMLARSVPN-VRVAR--PIRMQPMMGNINEG 58
           ATS+   G + SSF+GSWG S    GE+Y MLA+SVP+ VR+ +  P R+QPMM N+NEG
Sbjct: 2   ATSLSATGCVGSSFYGSWGTSIV--GEDYTMLAKSVPSQVRMGKGKPTRLQPMMKNVNEG 59

Query: 59  KGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNG 118
           KGIFAP+VV+TRNI+GKKRFNQ RGKAIALHSQVITEFCKSIGAD KQRQGLIRLAKKNG
Sbjct: 60  KGIFAPLVVITRNIVGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 119

Query: 119 ERLGFLA 125
           E LGFLA
Sbjct: 120 EWLGFLA 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099975|ref|XP_002311693.1| predicted protein [Populus trichocarpa] gi|222851513|gb|EEE89060.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/128 (71%), Positives = 104/128 (81%), Gaps = 7/128 (5%)

Query: 3   ATSVCVAGLS----SSFHGSWGASFANGGEEYRMLARSVPN-VRVARPIRMQPMMGNINE 57
           ATS+   G      +SF GSWGAS    GE+Y ML +SVPN VRV +P+++ PMM N+NE
Sbjct: 2   ATSISATGFQGGFGTSFKGSWGASIV--GEDYAMLIKSVPNHVRVGKPVKLPPMMKNVNE 59

Query: 58  GKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKN 117
           GKG+FAP+VV+TR  IGKKRFNQ RGKAIALHSQVITEFC+SIGAD KQRQGLIRLAKKN
Sbjct: 60  GKGVFAPIVVITRQAIGKKRFNQLRGKAIALHSQVITEFCRSIGADPKQRQGLIRLAKKN 119

Query: 118 GERLGFLA 125
           GERLGFLA
Sbjct: 120 GERLGFLA 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507314|gb|AFK41723.1| unknown [Lotus japonicus]

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/126 (74%), Positives = 105/126 (83%), Gaps = 6/126 (4%)

Query: 3   ATSVCVAG-LSSSFHGSWGASFANGGEEYRMLARSVPNVRVAR--PIRMQPMMGNINEGK 59
           ATSV   G + SSF+GSWG S    GE+Y  LA+S   VRV R  P+R+QPMM N+NEGK
Sbjct: 2   ATSVSATGCVGSSFYGSWGTSMT--GEDYTALAKST-QVRVGRGKPVRLQPMMKNVNEGK 58

Query: 60  GIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGE 119
           GIFAP+V++TRNI+GKKRFNQ RGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGE
Sbjct: 59  GIFAPLVIVTRNIVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGE 118

Query: 120 RLGFLA 125
            LGFLA
Sbjct: 119 WLGFLA 124

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574925|ref|XP_002528369.1| conserved hypothetical protein [Ricinus communis] gi|223532237|gb|EEF34041.1| conserved hypothetical protein [Ricinus communis]

 Score =  181 bits (459), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 103/124 (83%), Gaps = 5/124 (4%)

Query: 3   ATSVCVAGLSSSFHGSWGASFANGGEEYRMLARSVPN-VRVARPIRMQPMMGNINEGKGI 61
           ATS+   G    F G +G S    GE+Y ML +SVPN VRVA+P+R+ PMM N+NEGKG+
Sbjct: 2   ATSISATG----FKGGFGTSSFKVGEDYGMLVKSVPNHVRVAKPVRLPPMMKNVNEGKGV 57

Query: 62  FAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERL 121
           FAP+VV+TR I+GKKRFNQ RGKAIALHSQVITEFCKSIGAD+KQRQGLIRLAKKNGERL
Sbjct: 58  FAPLVVVTRQIVGKKRFNQLRGKAIALHSQVITEFCKSIGADSKQRQGLIRLAKKNGERL 117

Query: 122 GFLA 125
           GFLA
Sbjct: 118 GFLA 121

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107497|ref|XP_002314501.1| predicted protein [Populus trichocarpa] gi|118486295|gb|ABK94989.1| unknown [Populus trichocarpa] gi|222863541|gb|EEF00672.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (457), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 88/117 (75%), Positives = 99/117 (84%), Gaps = 3/117 (2%)

Query: 10  GLSSSFHGSWGASFANGGEEYRMLARSVP-NVRVARPIRMQPMMGNINEGKGIFAPVVVL 68
           G  ++F GSWG S    GE+Y ML + VP +VRVA+P++  PMM N+NEGKG+FAP VV+
Sbjct: 13  GFGTAFMGSWGTSIV--GEDYAMLVKPVPSHVRVAKPVKSPPMMKNVNEGKGLFAPAVVI 70

Query: 69  TRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 125
           TR IIGKKRFNQ RGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA
Sbjct: 71  TRQIIGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458862|ref|XP_004147165.1| PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucumis sativus] gi|449498595|ref|XP_004160579.1| PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucumis sativus] gi|164449260|gb|ABY56089.1| proton gradient regulation 5 [Cucumis melo] gi|164449273|gb|ABY56101.1| proton gradient regulation 5 [Cucumis sativus]

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 93/129 (72%), Positives = 107/129 (82%), Gaps = 6/129 (4%)

Query: 1   MAATSVCVAGL--SSSFHGSWGASFANGGEEY-RMLARSVP-NVRVARPIRMQPMMGNIN 56
           MAATS+   GL  SSSF G WG++ A  GE+Y  +LA+  P  V + +P+R +PMM N+N
Sbjct: 1   MAATSISATGLCCSSSFFGGWGSTVA--GEDYPALLAKQGPVQVGMGKPVRSRPMMKNVN 58

Query: 57  EGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKK 116
           EGKG+FAP+VV+TRNIIGKKRFNQ RGKAIALHSQVITEFCKSIGAD KQRQGLIRLAKK
Sbjct: 59  EGKGVFAPLVVVTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKK 118

Query: 117 NGERLGFLA 125
           NGERLGFLA
Sbjct: 119 NGERLGFLA 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2058974	133	PGR5 "proton gradient regulati	0.984	0.924	0.674	6.8e-40

TAIR|locus:2058974 PGR5 "proton gradient regulation 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 91/135 (67%), Positives = 109/135 (80%)

Query:     1 MAATSVCVAG-----LSSSFHGSWGASFANGGEEYR-MLARSV--PN-VRVARP-IRMQP 50
             MAA S+   G     + +SF+G WG+S +  GE+Y+ ML+++V  P   RV+R  IR  P
Sbjct:     1 MAAASISAIGCNQTLIGTSFYGGWGSSIS--GEDYQTMLSKTVAPPQQARVSRKAIRAVP 58

Query:    51 MMGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGL 110
             MM N+NEGKG+FAP+VV+TRN++GKKRFNQ RGKAIALHSQVITEFCKSIGADAKQRQGL
Sbjct:    59 MMKNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGL 118

Query:   111 IRLAKKNGERLGFLA 125
             IRLAKKNGERLGFLA
Sbjct:   119 IRLAKKNGERLGFLA 133


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       125   0.00091  102 3  11 22  0.47    30
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  114 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.50u 0.11s 11.61t   Elapsed:  00:00:01
  Total cpu time:  11.50u 0.11s 11.61t   Elapsed:  00:00:01
  Start:  Fri May 10 18:12:05 2013   End:  Fri May 10 18:12:06 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA;IMP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009644 "response to high light intensity" evidence=RCA;IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010117 "photoprotection" evidence=IMP

GO:0071484 "cellular response to light intensity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SL05	PGR5_ARATH	No assigned EC number	0.6666	0.984	0.9248	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00