Citrus Sinensis ID: 033212

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MLIQNQKSTFPSSVLCHKLLSLIVLKLNQKKKKMANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDANASDARASTPRTFSSSCVSTTSSSASASAVVAGSKNFLRGVQIQRSFSIFEN
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHcHHHHHHHHcccccccccccccccccEEcccccccccHHHcccccccccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHccccccccccccccccccEEEcccHHHHcccEEccccccccEEEEEEccHHccc
Coil and Loop (DISEMBL)
mliqnqkstfpssvLCHKLLSLIVLKLNQKKKKMANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEekdanasdarastprtfssscvsttsssaSASAVVAGSKNFLRGVQIQRSFSIFEN
Flexible Loop (DISEMBL)
mliqnqkstfpssvlCHKLLSLIVLKLNQKKKKMANSRITRFVMEVAPPQFVSVMRHRTAKMLDTIseeekdanasdarastprtfssscvsttsssASASAVVAGSKNFLRGVQIQRSFSIFEN
Low Complexity Region (SEG)
MLIQNQKSTFPSSVLCHKLLSLIVLKLNQKKKKMANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDANASDARASTPRtfssscvsttsssasasavvagsKNFLRGVQIQRSFSIFEN
Disordered region (IsUnstruct)
************SVLCHKLLSLIVLKLNQKKKKMANSRITRFVMEVAPPQFVSVMR*****************************************************FLRGVQI*********
Disordered Region (DISOPRED)
************SVLCHKLLSLIVLKL*************RFVMEVAPPQFVSVMRHRTAKML********************************************KNFLRGVQIQRSFS****
Disordered Region (DISEMBL)
MLIQNQKSTFPSSVLCHKLLSLIVLKLNQKKKKMANSRITRFVMEVAPPQFVSVMRHRTAKMLDTIS************************************VAGSKNFLRGVQIQRSFSIFEN
Disordered Region (DISPRO)
******KSTFPSSVLCHKLLSLIVLKLNQKKKKMANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEK******************CVSTTSSSASASAVVAGSKNFLRGVQIQRSFSIF**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLIQNQKSTFPSSVLCHKLLSLIVLKLNQKKKKMANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDANASDARASTPRTFSSSCVSTTSSSASASAVVAGSKNFLRGVQIQRSFSIFEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
224116416	84	predicted protein [Populus trichocarpa]	0.672	1.0	0.532	6e-17
255557213	89	conserved hypothetical protein [Ricinus	0.712	1.0	0.521	1e-14
357475041	85	hypothetical protein MTR_4g083110 [Medic	0.616	0.905	0.463	5e-13
356510865	621	PREDICTED: CBL-interacting serine/threon	0.4	0.080	0.68	6e-13
357491903	69	hypothetical protein MTR_5g077680 [Medic	0.424	0.768	0.603	2e-12
255569999	79	hypothetical protein RCOM_0596970 [Ricin	0.4	0.632	0.64	3e-12
224077644	84	predicted protein [Populus trichocarpa]	0.672	1.0	0.5	7e-12
357475045	89	hypothetical protein MTR_4g083130 [Medic	0.648	0.910	0.487	1e-10
18397428	97	uncharacterized protein [Arabidopsis tha	0.328	0.422	0.682	4e-09
297845960	94	hypothetical protein ARALYDRAFT_890567 [	0.736	0.978	0.446	4e-09

>gi|224116416|ref|XP_002317294.1| predicted protein [Populus trichocarpa] gi|222860359|gb|EEE97906.1| predicted protein [Populus trichocarpa]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 65/92 (70%), Gaps = 8/92 (8%)

Query: 34  MANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDANASDARASTPRTFSSSCVST 93
           MANSRI +F+ E APPQ++SVMRHRT+KMLDTISEE++D  ASD     P   SS+ V+T
Sbjct: 1   MANSRIAKFITEAAPPQYISVMRHRTSKMLDTISEEDRDVAASDPFPMAPT--SSTIVTT 58

Query: 94  TSSSASASAVVAGSKNFLRGVQIQRSFSIFEN 125
           +++S +A      S  F +G  I+RSFS+F N
Sbjct: 59  SATSVAAK----NSTYFFKG--IRRSFSLFAN 84

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557213|ref|XP_002519637.1| conserved hypothetical protein [Ricinus communis] gi|223541054|gb|EEF42610.1| conserved hypothetical protein [Ricinus communis]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 69/92 (75%), Gaps = 3/92 (3%)

Query: 34  MANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDANASDARASTPRTFSSSCVST 93
           MANSRI RF+ EVAPPQ++SV+R R +KMLDTI+EEE+D + S++ AS P T  +S  + 
Sbjct: 1   MANSRIARFITEVAPPQYISVIRRRASKMLDTINEEERDVSPSNSLASAP-TSPASASTN 59

Query: 94  TSSSASASAVVAGSKNFLRGVQIQRSFSIFEN 125
            +S+++A+ V   SK F R  ++QRSFS+F+N
Sbjct: 60  AASASAAAPVATNSKYFPR--RVQRSFSVFQN 89

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475041|ref|XP_003607806.1| hypothetical protein MTR_4g083110 [Medicago truncatula] gi|355508861|gb|AES90003.1| hypothetical protein MTR_4g083110 [Medicago truncatula]

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 63/82 (76%), Gaps = 5/82 (6%)

Query: 34  MANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDANASDARASTPRTFSSSCVST 93
           MANSRI RF MEVAPPQ+VSVMRHRT+KM++TI+E++++ N++D+  S P++  +S ++ 
Sbjct: 1   MANSRIARFFMEVAPPQYVSVMRHRTSKMMETITEDDREINSNDSVISPPKSSLASSLAA 60

Query: 94  TSSSASASAVVAGSKNFLRGVQ 115
           +S++A+       +++FL+ V 
Sbjct: 61  SSTNAT-----VNTRDFLKEVH 77

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510865|ref|XP_003524154.1| PREDICTED: CBL-interacting serine/threonine-protein kinase 23-like [Glycine max]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 43/50 (86%)

Query: 34 MANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDANASDARASTP 83
          MANSRI RF MEVAPPQ+V+VMRHRT+KMLDTI+E+E++ + SD+  S P
Sbjct: 1  MANSRIARFFMEVAPPQYVTVMRHRTSKMLDTITEDEREISTSDSVMSPP 50

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491903|ref|XP_003616239.1| hypothetical protein MTR_5g077680 [Medicago truncatula] gi|355517574|gb|AES99197.1| hypothetical protein MTR_5g077680 [Medicago truncatula]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 45/53 (84%)

Query: 34 MANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDANASDARASTPRTF 86
          MA+SR+ RF MEVAPPQ+VSVMRHRT+KM++TI+EE+++ N+ D+  S P+T 
Sbjct: 1  MASSRVARFFMEVAPPQYVSVMRHRTSKMMETIAEEDREINSHDSVISLPKTL 53

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569999|ref|XP_002525962.1| hypothetical protein RCOM_0596970 [Ricinus communis] gi|223534694|gb|EEF36386.1| hypothetical protein RCOM_0596970 [Ricinus communis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 43/50 (86%)

Query: 34 MANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDANASDARASTP 83
          MA+SRI +F+ EVAPPQ++SVMRHR +KMLDTI+EEE+D + S++ AS P
Sbjct: 1  MASSRIAKFITEVAPPQYISVMRHRASKMLDTINEEERDVSPSNSLASAP 50

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077644|ref|XP_002305342.1| predicted protein [Populus trichocarpa] gi|222848306|gb|EEE85853.1| predicted protein [Populus trichocarpa]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 64/92 (69%), Gaps = 8/92 (8%)

Query: 34  MANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDANASDARASTPRTFSSSCVST 93
           MANSRI +F+ E APPQ+++V+R R +K+LDTISEE++D  ASD+      + +SS + T
Sbjct: 1   MANSRIAKFITEAAPPQYINVIRQRASKLLDTISEEDRDVAASDSSPM---SPTSSTIVT 57

Query: 94  TSSSASASAVVAGSKNFLRGVQIQRSFSIFEN 125
           TS++  A+   A S  F +G  IQRSFS FEN
Sbjct: 58  TSATYVAA---ANSTYFPKG--IQRSFSTFEN 84

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475045|ref|XP_003607808.1| hypothetical protein MTR_4g083130 [Medicago truncatula] gi|355508863|gb|AES90005.1| hypothetical protein MTR_4g083130 [Medicago truncatula]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 34  MANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDANASDARASTPRTFSSSCVST 93
           MANSRI RF MEVAPPQ+VSVMR RT+ M++TI+EE+ + +++D+  S P+  S+S ++ 
Sbjct: 1   MANSRIARFFMEVAPPQYVSVMRRRTSMMMETITEEDMEMSSNDSVISPPKNSSTSSLAA 60

Query: 94  TSSSASASAVVAGSKNFLRGVQ 115
           ++ ++S +AVV  S+ FL+ V 
Sbjct: 61  SACASSTNAVV-NSRYFLKEVH 81

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397428|ref|NP_564352.1| uncharacterized protein [Arabidopsis thaliana] gi|12320849|gb|AAG50559.1|AC073506_1 hypothetical protein [Arabidopsis thaliana] gi|16323184|gb|AAL15326.1| At1g30260/F12P21_9 [Arabidopsis thaliana] gi|21436007|gb|AAM51581.1| At1g30260/F12P21_9 [Arabidopsis thaliana] gi|332193079|gb|AEE31200.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 34 MANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDAN 74
          MA SR+ RF+ EVAPPQFV+VMR RTAK+LDTI EEE++  
Sbjct: 1  MATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVG 41

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845960|ref|XP_002890861.1| hypothetical protein ARALYDRAFT_890567 [Arabidopsis lyrata subsp. lyrata] gi|297336703|gb|EFH67120.1| hypothetical protein ARALYDRAFT_890567 [Arabidopsis lyrata subsp. lyrata]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 2/94 (2%)

Query: 34  MANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDANASDARAS--TPRTFSSSCV 91
           MA++R+ RF+ EVAPPQFV+VMR RTAK+LDTI EEE++       +S  T +  SS   
Sbjct: 1   MASARLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDSIFSSSLTSKNISSPFT 60

Query: 92  STTSSSASASAVVAGSKNFLRGVQIQRSFSIFEN 125
           ST  SS S+SA  +        ++ + SF +F+N
Sbjct: 61  STYPSSVSSSASCSSGLKKFPVIENRGSFPVFKN 94

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2009782	97	AT1G30260 "AT1G30260" [Arabido	0.312	0.402	0.717	1.5e-10
TAIR|locus:2133094	741	GALT2 "AGP galactosyltransfera	0.296	0.049	0.743	2.7e-07

TAIR|locus:2009782 AT1G30260 "AT1G30260" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 28/39 (71%), Positives = 34/39 (87%)

Query:    34 MANSRITRFVMEVAPPQFVSVMRHRTAKMLDTISEEEKD 72
             MA SR+ RF+ EVAPPQFV+VMR RTAK+LDTI EEE++
Sbjct:     1 MATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEERE 39

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2133094 GALT2 "AGP galactosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 29/39 (74%), Positives = 31/39 (79%)

Query:    34 MANSRITRFVMEVAPPQFVSVMR-HRTAKM-LDTISEEE 70
             MA SR+ RFV EVAPPQFV+VMR HR AK  LDTI EEE
Sbjct:     1 MATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEE 39


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.129   0.345    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       102   0.00091  102 3  10 22  0.49    29
                                                     29  0.48    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  121 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.58u 0.10s 15.68t   Elapsed:  00:00:00
  Total cpu time:  15.58u 0.10s 15.68t   Elapsed:  00:00:00
  Start:  Fri May 10 18:26:40 2013   End:  Fri May 10 18:26:40 2013

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

GO:0010405 "arabinogalactan protein metabolic process" evidence=IDA

GO:0012505 "endomembrane system" evidence=IDA

GO:0018258 "protein O-linked glycosylation via hydroxyproline" evidence=IDA

GO:0035250 "UDP-galactosyltransferase activity" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00