Citrus Sinensis ID: 033222

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MEFLPFPFQMEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEEEEEEEEEccccccccHHHHccHHHHHHHHHHHHHHHHcccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEcccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcHHHcccHHHHHHcccccccccccccccccccccccEEEEccccccc
Coil and Loop (DISEMBL)
meflpfpfqmeifeknptkiknYGIWLRyqsrtgyhNMYKEYRDTTLNGAVEQMYTEMAsrhrvrspcIQIIRTATIpaklckrestkqfhnskikfplvfkkvrpptrklkttykasrpnlfm
Flexible Loop (DISEMBL)
MEFLPFPFQMEIFeknptkiknyGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMAsrhrvrspcIQIIRTAtipaklckrestkqfhnskikfplvfkkvrpptrklkttykasrpnlfm
Low Complexity Region (SEG)
MEFLPFPFQMEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Disordered region (IsUnstruct)
***LPFPFQMEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKV********************
Disordered Region (DISOPRED)
*EFLPFPFQMEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF*
Disordered Region (DISEMBL)
MEFLPFPFQMEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Disordered Region (DISPRO)
*EFLPFPFQMEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPT*KLKTTYKASR*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFLPFPFQMEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
P51418	178	60S ribosomal protein L18	yes	no	0.919	0.640	0.912	1e-58
Q9LUD4	178	60S ribosomal protein L18	no	no	0.919	0.640	0.921	2e-58
Q9ATF5	178	60S ribosomal protein L18	N/A	no	0.919	0.640	0.921	3e-58
Q943F3	178	60S ribosomal protein L18	yes	no	0.919	0.640	0.885	9e-56
Q7ZWJ4	176	60S ribosomal protein L18	yes	no	0.879	0.619	0.535	1e-29
Q54MK8	171	60S ribosomal protein L18	yes	no	0.870	0.631	0.557	1e-29
Q02543	176	60S ribosomal protein L18	yes	no	0.887	0.625	0.522	3e-29
Q3T003	176	60S ribosomal protein L18	yes	no	0.887	0.625	0.522	3e-29
P62718	176	60S ribosomal protein L18	yes	no	0.887	0.625	0.522	3e-29
P62717	176	60S ribosomal protein L18	yes	no	0.887	0.625	0.522	3e-29

>sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2

 Score =  224 bits (571), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/114 (91%), Positives = 112/114 (98%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct: 65  EIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           II+TAT+PAKLCKRESTKQFHNSKIKFPLVF+KVRPP+RKLKTTYKA++PNLFM
Sbjct: 125 IIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1

 Score =  223 bits (569), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/114 (92%), Positives = 110/114 (96%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCIQ
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQ 124

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           II+TAT+PAKLCKRE TKQFHNSKIKFPLVF+KVRPP+RKLKTTYKAS+PNLFM
Sbjct: 125 IIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1

 Score =  223 bits (567), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 105/114 (92%), Positives = 110/114 (96%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQ
Sbjct: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQ 124

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           II+TATIPAKLCKRES+KQFHNSKIKFPLV +K+RPP+RKLKT YKASRPNLFM
Sbjct: 125 IIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178

Castanea sativa (taxid: 21020)

>sp|Q943F3|RL18A_ORYSJ 60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1

 Score =  214 bits (546), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 101/114 (88%), Positives = 108/114 (94%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           II+TAT+  KLCKR++TKQFH S IKFPLV++KVRPPTRKLKTT+KASRPNLFM
Sbjct: 125 IIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7ZWJ4|RL18A_DANRE 60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 79/112 (70%), Gaps = 3/112 (2%)

Query: 12  IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 71
           +FEK+P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+  IQI
Sbjct: 67  VFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQI 126

Query: 72  IRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
           ++   I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct: 127 MKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

Danio rerio (taxid: 7955)

>sp|Q54MK8|RL18A_DICDI 60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 77/113 (68%), Gaps = 5/113 (4%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFE  P K+KN+G+++RY SR+G HN+YKEYRD T  GAV QMY EMASRH  R   I 
Sbjct: 62  EIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIH 121

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
           II    I A L +R +TKQFH+SKIKFPL  +       K K+T+ A+RPN F
Sbjct: 122 IIDIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169

Dictyostelium discoideum (taxid: 44689)

>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 79/113 (69%), Gaps = 3/113 (2%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQ
Sbjct: 66  QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 125

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
           I++   I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct: 126 IMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

Homo sapiens (taxid: 9606)

>sp|Q3T003|RL18A_BOVIN 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 79/113 (69%), Gaps = 3/113 (2%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQ
Sbjct: 66  QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 125

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
           I++   I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct: 126 IMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

Bos taurus (taxid: 9913)

>sp|P62718|RL18A_RAT 60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 79/113 (69%), Gaps = 3/113 (2%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQ
Sbjct: 66  QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 125

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
           I++   I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct: 126 IMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

Rattus norvegicus (taxid: 10116)

>sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 79/113 (69%), Gaps = 3/113 (2%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQ
Sbjct: 66  QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 125

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
           I++   I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct: 126 IMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
224062663	178	predicted protein [Populus trichocarpa]	0.919	0.640	0.982	2e-60
449459356	178	PREDICTED: 60S ribosomal protein L18a-li	0.919	0.640	0.956	5e-60
118482586	178	unknown [Populus trichocarpa] gi|1184855	0.919	0.640	0.973	9e-60
224078998	178	predicted protein [Populus trichocarpa]	0.919	0.640	0.973	9e-60
449519146	752	PREDICTED: protein ASPARTIC PROTEASE IN	0.919	0.151	0.956	1e-59
118484993	178	unknown [Populus trichocarpa]	0.919	0.640	0.973	1e-59
255557335	303	60S ribosomal protein L18a, putative [Ri	0.919	0.376	0.982	3e-59
449453872	757	PREDICTED: LOW QUALITY PROTEIN: protein	0.911	0.149	0.955	3e-59
224116756	178	predicted protein [Populus trichocarpa]	0.919	0.640	0.964	4e-59
315937245	154	hypothetical protein [Jatropha curcas]	0.919	0.740	0.956	4e-59

>gi|224062663|ref|XP_002300869.1| predicted protein [Populus trichocarpa] gi|118481342|gb|ABK92614.1| unknown [Populus trichocarpa] gi|222842595|gb|EEE80142.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/114 (98%), Positives = 113/114 (99%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVRSPCIQ
Sbjct: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQ 124

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           II+TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Sbjct: 125 IIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459356|ref|XP_004147412.1| PREDICTED: 60S ribosomal protein L18a-like [Cucumis sativus] gi|449515807|ref|XP_004164939.1| PREDICTED: 60S ribosomal protein L18a-like [Cucumis sativus]

 Score =  234 bits (597), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 109/114 (95%), Positives = 114/114 (100%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFEKNPTK+KNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ
Sbjct: 65  EIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 124

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           II+TAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPPTRKLKTTYKAS+PNLFM
Sbjct: 125 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482586|gb|ABK93213.1| unknown [Populus trichocarpa] gi|118485561|gb|ABK94632.1| unknown [Populus trichocarpa]

 Score =  233 bits (595), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 111/114 (97%), Positives = 113/114 (99%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           II+TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPP+RKLKTTYKASRPNLFM
Sbjct: 125 IIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078998|ref|XP_002305712.1| predicted protein [Populus trichocarpa] gi|224079000|ref|XP_002305713.1| predicted protein [Populus trichocarpa] gi|224079007|ref|XP_002305715.1| predicted protein [Populus trichocarpa] gi|118481545|gb|ABK92715.1| unknown [Populus trichocarpa] gi|222848676|gb|EEE86223.1| predicted protein [Populus trichocarpa] gi|222848677|gb|EEE86224.1| predicted protein [Populus trichocarpa] gi|222848679|gb|EEE86226.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (595), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 111/114 (97%), Positives = 113/114 (99%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           II+TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPP+RKLKTTYKASRPNLFM
Sbjct: 125 IIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519146|ref|XP_004166596.1| PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus]

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/114 (95%), Positives = 113/114 (99%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct: 639 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRCPCIQ 698

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           II+TAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPPTRKLKTTYKAS+PNLFM
Sbjct: 699 IIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 752

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484993|gb|ABK94361.1| unknown [Populus trichocarpa]

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/114 (97%), Positives = 112/114 (98%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVRSPCIQ
Sbjct: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQ 124

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           II+TATIPAKLCKR STKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Sbjct: 125 IIKTATIPAKLCKRGSTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557335|ref|XP_002519698.1| 60S ribosomal protein L18a, putative [Ricinus communis] gi|223541115|gb|EEF42671.1| 60S ribosomal protein L18a, putative [Ricinus communis]

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/114 (98%), Positives = 113/114 (99%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct: 190 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 249

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           II+TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Sbjct: 250 IIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453872|ref|XP_004144680.1| PREDICTED: LOW QUALITY PROTEIN: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus]

 Score =  231 bits (590), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/113 (95%), Positives = 112/113 (99%)

Query: 12  IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 71
           IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQI
Sbjct: 645 IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRCPCIQI 704

Query: 72  IRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           I+TAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPPTRKLKTTYKAS+PNLFM
Sbjct: 705 IKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 757

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116756|ref|XP_002317384.1| predicted protein [Populus trichocarpa] gi|118483631|gb|ABK93710.1| unknown [Populus trichocarpa] gi|222860449|gb|EEE97996.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (589), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 110/114 (96%), Positives = 112/114 (98%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           II+TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPP+RKLKTTYKASRPNLFM
Sbjct: 125 IIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315937245|gb|ADU56180.1| hypothetical protein [Jatropha curcas]

 Score =  231 bits (589), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/114 (95%), Positives = 112/114 (98%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct: 41  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 100

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           II+T TIPAKLCKRES+KQFHNSKIKFPLVFKKVRPPTRKL+TTYKASRPNLFM
Sbjct: 101 IIKTGTIPAKLCKRESSKQFHNSKIKFPLVFKKVRPPTRKLRTTYKASRPNLFM 154

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
TAIR|locus:2040914	178	AT2G34480 [Arabidopsis thalian	0.919	0.640	0.912	2.3e-55
TAIR|locus:2089516	178	AT3G14600 [Arabidopsis thalian	0.919	0.640	0.921	2.3e-55
TAIR|locus:1005716700	178	AT1G29965 [Arabidopsis thalian	0.919	0.640	0.912	3.7e-55
TAIR|locus:2198269	312	RPL18AA "60S ribosomal protein	0.919	0.365	0.912	3.7e-55
ZFIN|ZDB-GENE-040426-1071	176	rpl18a "ribosomal protein L18a	0.879	0.619	0.535	4.4e-29
UNIPROTKB|Q3T003	176	RPL18A "60S ribosomal protein	0.887	0.625	0.522	1.5e-28
UNIPROTKB|E2RL34	176	RPL18A "60S ribosomal protein	0.887	0.625	0.522	1.5e-28
UNIPROTKB|Q02543	176	RPL18A "60S ribosomal protein	0.887	0.625	0.522	1.5e-28
UNIPROTKB|F1S935	224	RPL18A "Uncharacterized protei	0.887	0.491	0.522	1.5e-28
MGI|MGI:1924058	176	Rpl18a "ribosomal protein L18A	0.887	0.625	0.522	2.4e-28

TAIR|locus:2040914 AT2G34480 [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 104/114 (91%), Positives = 112/114 (98%)

Query:    11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
             EI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct:    65 EIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query:    71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
             II+TAT+PAKLCKRESTKQFHNSKIKFPLVF+KVRPP+RKLKTTYKA++PNLFM
Sbjct:   125 IIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2089516 AT3G14600 [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 105/114 (92%), Positives = 110/114 (96%)

Query:    11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
             EIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCIQ
Sbjct:    65 EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQ 124

Query:    71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
             II+TAT+PAKLCKRE TKQFHNSKIKFPLVF+KVRPP+RKLKTTYKAS+PNLFM
Sbjct:   125 IIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:1005716700 AT1G29965 [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 104/114 (91%), Positives = 111/114 (97%)

Query:    11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
             EIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct:    65 EIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query:    71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
             II+TAT+PA LCKRESTKQFHNSKIKFPLVF+KVRPPTRKLKTT+KA++PNLFM
Sbjct:   125 IIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2198269 RPL18AA "60S ribosomal protein L18A-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 104/114 (91%), Positives = 111/114 (97%)

Query:    11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
             EIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct:   199 EIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 258

Query:    71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
             II+TAT+PA LCKRESTKQFHNSKIKFPLVF+KVRPPTRKLKTT+KA++PNLFM
Sbjct:   259 IIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 312

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0006914 "autophagy" evidence=RCA

ZFIN|ZDB-GENE-040426-1071 rpl18a "ribosomal protein L18a" [Danio rerio (taxid:7955)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 60/112 (53%), Positives = 79/112 (70%)

Query:    12 IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 71
             +FEK+P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+  IQI
Sbjct:    67 VFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQI 126

Query:    72 IRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
             ++   I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct:   127 MKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q3T003 RPL18A "60S ribosomal protein L18a" [Bos taurus (taxid:9913)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 59/113 (52%), Positives = 79/113 (69%)

Query:    11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
             ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQ
Sbjct:    66 QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 125

Query:    71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
             I++   I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct:   126 IMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RL34 RPL18A "60S ribosomal protein L18a" [Canis lupus familiaris (taxid:9615)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 59/113 (52%), Positives = 79/113 (69%)

Query:    11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
             ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQ
Sbjct:    66 QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 125

Query:    71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
             I++   I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct:   126 IMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q02543 RPL18A "60S ribosomal protein L18a" [Homo sapiens (taxid:9606)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 59/113 (52%), Positives = 79/113 (69%)

Query:    11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
             ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQ
Sbjct:    66 QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 125

Query:    71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
             I++   I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct:   126 IMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1S935 RPL18A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 59/113 (52%), Positives = 79/113 (69%)

Query:    11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
             ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQ
Sbjct:   114 QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 173

Query:    71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
             I++   I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct:   174 IMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 223

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:1924058 Rpl18a "ribosomal protein L18A" [Mus musculus (taxid:10090)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 59/113 (52%), Positives = 79/113 (69%)

Query:    11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
             ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQ
Sbjct:    66 QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 125

Query:    71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
             I++   I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct:   126 IMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P62718	RL18A_RAT	No assigned EC number	0.5221	0.8870	0.625	yes	no
Q9ATF5	RL18A_CASSA	No assigned EC number	0.9210	0.9193	0.6404	N/A	no
Q3T003	RL18A_BOVIN	No assigned EC number	0.5221	0.8870	0.625	yes	no
Q7ZWJ4	RL18A_DANRE	No assigned EC number	0.5357	0.8790	0.6193	yes	no
P51418	R18A2_ARATH	No assigned EC number	0.9122	0.9193	0.6404	yes	no
P62717	RL18A_MOUSE	No assigned EC number	0.5221	0.8870	0.625	yes	no
Q9LUD4	R18A3_ARATH	No assigned EC number	0.9210	0.9193	0.6404	no	no
Q943F3	RL18A_ORYSJ	No assigned EC number	0.8859	0.9193	0.6404	yes	no
Q54MK8	RL18A_DICDI	No assigned EC number	0.5575	0.8709	0.6315	yes	no
Q02543	RL18A_HUMAN	No assigned EC number	0.5221	0.8870	0.625	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_kg.C_LG_II0025 SubName- Full=Putative uncharacterized protein; (178 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	124
pfam01775	55	pfam01775, Ribosomal_L18ae, Ribosomal L18ae/LX pro	5e-17
COG2157	85	COG2157, RPL20A, Ribosomal protein L20A (L18A) [Tr	1e-16

>gnl|CDD|216694 pfam01775, Ribosomal_L18ae, Ribosomal L18ae/LX protein domain

 Score = 68.8 bits (169), Expect = 5e-17
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query: 28 RYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
            +SR+G HN YKEYR     GAVE++Y+E+ SRHR++   IQ
Sbjct: 13 TEKSRSGTHNFYKEYRALNEEGAVEKVYSELGSRHRLKRSQIQ 55

This family includes eukaryotic L18ae as well as archaebacterial specific LX. Ribosomal protein L18ae forms part of the 60S ribosomal subunit. Length = 55

>gnl|CDD|225068 COG2157, RPL20A, Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]

 Score = 68.6 bits (168), Expect = 1e-16
 Identities = 27/85 (31%), Positives = 43/85 (50%)

Query: 14 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 73
          E  P   +  GIW+ Y SR+G+H   KE R      A+E++Y++  SRH+V+   I+I  
Sbjct: 1  EPMPKIFRVKGIWIFYDSRSGWHKFTKEVRALKEEDAIEKVYSDFGSRHKVKRSSIKIEE 60

Query: 74 TATIPAKLCKRESTKQFHNSKIKFP 98
             I  +  +    K+     +KFP
Sbjct: 61 VEEIEPEDVEDPVVKRLLTEDLKFP 85

Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
KOG0829	169	consensus 60S ribosomal protein L18A [Translation,	100.0
PRK00773	76	rplX 50S ribosomal protein LX; Validated	100.0
PF01775	124	Ribosomal_L18ae: Ribosomal L18ae/LX protein domain	100.0
COG2157	85	RPL20A Ribosomal protein L20A (L18A) [Translation,	99.97

>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-56  Score=344.36  Aligned_cols=111  Identities=61%  Similarity=1.003  Sum_probs=107.4

Q ss_pred             EeccCCCceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeeecCCCCCCcccccc
Q 033222           11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQF   90 (124)
Q Consensus        11 eI~Ek~p~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikqf   90 (124)
                      ||+|++|+.||||||||+||||||||||||||||+|.+|||+|||+|||||||||+++||||+|+||++++|+|+.++||
T Consensus        59 qi~E~~p~~vkNfGIwlrYdSRsG~HNmYkEyRd~t~~gAV~q~y~dMaaRhRar~~~I~Iikv~~v~a~~~kR~~vkqF  138 (169)
T KOG0829|consen   59 QIFEKSPLKVKNFGIWLRYDSRSGTHNMYKEYRDTTRVGAVEQCYRDMAARHRARFRSIQIIKVAEVPAEDCKRAYVKQF  138 (169)
T ss_pred             eecCCCCceeeeeEEEEEEccCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhhhcccceeEEEEeeeeHHHhchHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcccceecccCCCCcccCCCeeecCCcCCC
Q 033222           91 HNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM  124 (124)
Q Consensus        91 ~~~~ikFPl~~r~~~~~~~~~~~~F~~~rP~t~~  124 (124)
                      ||++|+|||||++++.   +.+.+|++.|||||+
T Consensus       139 hd~kikFPL~~rv~~~---k~~~~fs~~rP~tf~  169 (169)
T KOG0829|consen  139 HDSKIKFPLPHRVVNR---KSKKTFSTKRPSTFF  169 (169)
T ss_pred             hccCcccccccccccc---ccccccccCCCcccC
Confidence            9999999999999874   347889999999996

>PRK00773 rplX 50S ribosomal protein LX; Validated

Probab=100.00  E-value=2.8e-35  Score=202.19  Aligned_cols=73  Identities=19%  Similarity=0.348  Sum_probs=71.8

Q ss_pred             eeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeeecCCCCCCcccccccc
Q 033222           20 IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHN   92 (124)
Q Consensus        20 vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikqf~~   92 (124)
                      +||||||++|+|++|+|||||||||++++|||||||+||||||++++++|+|++|+||+++||+|++|+||+.
T Consensus         2 ~k~f~V~g~~~~~~~~~~f~Ke~ra~~~~~Ave~~Ys~~gSrH~~kr~~I~I~~V~ei~~~e~~~~~vkq~~~   74 (76)
T PRK00773          2 MKIYRVKGTFLAGDEWQKFTKEVRALNEKDALEKVYSLFGSKHKVKRTQIKIEEVSEISPEEAEDPRVRELAK   74 (76)
T ss_pred             ceEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCcccEEEEEEEEeCHHHcCCHHHHHHhh
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999984

>PF01775 Ribosomal_L18ae: Ribosomal L18ae/LX protein domain; InterPro: IPR023573 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=4e-34  Score=212.12  Aligned_cols=66  Identities=67%  Similarity=1.138  Sum_probs=60.5

Q ss_pred             eEeccCCCceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEee
Q 033222           10 MEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTA   75 (124)
Q Consensus        10 ~eI~Ek~p~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~   75 (124)
                      -+|+|++|+.|||||||++||||+|+|||||||||+|++|||||||+||||||++|+++|||++|+
T Consensus        59 ~~i~ek~p~~VKnfgI~lry~sr~g~~nfyKEyra~s~~~Aveq~YsdmGSrHrvkr~~I~I~~Ve  124 (124)
T PF01775_consen   59 KEIFEKNPTKVKNFGIWLRYDSRSGTHNFYKEYRALSENGAVEQVYSDMGSRHRVKRSSIQIIKVE  124 (124)
T ss_dssp             EEE-SSSTTS-EEEEEEEEEEESSCEEEEEEEEEESCHHHHHHHHHHHHHHTTT--GGGEEEEEEE
T ss_pred             EcccCCCCcceeEEEEEEEEecCCccEEEEEEeccCCHHHHHHHHHHHhhhhhCCCccceEEEEeC
Confidence            479999999999999999999999999999999999999999999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the eukaryotic 60S ribosomal protein L18ae [] and the archaea 50S ribosomal protein LX. Rat ribosomal protein L18 is homologous to Xenopus laevis L14 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A1D_X 4A1B_X 4A18_X 4A19_X 2JXT_A 3IZR_S 3IZS_S.

>COG2157 RPL20A Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=2.6e-32  Score=191.48  Aligned_cols=84  Identities=31%  Similarity=0.597  Sum_probs=81.7

Q ss_pred             CCCceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeeecCCCCCCccccccccCC
Q 033222           15 KNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSK   94 (124)
Q Consensus        15 k~p~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikqf~~~~   94 (124)
                      ..|..++|+|||++|+|++|+||||||+||+++++|+|.+||||||||+++|++|+|++|+||+++|+.|+.|++|++.+
T Consensus         2 ~~~K~f~V~G~~~~~~~~~~~~kf~Kevra~~e~~AiE~vYS~~gsrhkvkR~~I~I~~V~Ei~pedv~d~~vk~L~~~~   81 (85)
T COG2157           2 PMPKIFRVKGIWIFYDSRSGWHKFTKEVRALKEEDAIEKVYSDFGSRHKVKRSSIKIEEVEEIEPEDVEDPVVKRLLTED   81 (85)
T ss_pred             CcceEEEEeeEEEEecCCCcceehhHHhhhcCHHHHHHHHHHHhhhhccccccceeEEEEEecChhhcccHHHHHHhccc
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cccc
Q 033222           95 IKFP   98 (124)
Q Consensus        95 ikFP   98 (124)
                      ++||
T Consensus        82 ~~~~   85 (85)
T COG2157          82 LKFP   85 (85)
T ss_pred             ccCC
Confidence            9998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	124
3izr_S	178	Localization Of The Large Subunit Ribosomal Protein		7e-57
3izs_S	167	Localization Of The Large Subunit Ribosomal Protein		1e-50
4a18_X	189	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-29
3u5e_S	172	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-21
3zf7_S	179	High-resolution Cryo-electron Microscopy Structure		7e-14

>pdb|3IZR|S Chain S, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 178

Iteration: 1
 Score =  214 bits (546), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 101/114 (88%), Positives = 108/114 (94%)
Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
           II+TAT+  KLCKR++TKQFH S IKFPLV++KVRPPTRKLKTT+KASRPNLFM
Sbjct: 125 IIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

>pdb|3IZS|S Chain S, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 167

Iteration: 1
 Score =  194 bits (492), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/103 (88%), Positives = 97/103 (94%)
Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKT 113
           II+TAT+  KLCKR++TKQFH S IKFPLV++KVRPPTRKLKT
Sbjct: 125 IIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKT 167

>pdb|4A18|X Chain X, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 189

Iteration: 1
 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 76/113 (67%)
Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EI+EK+   +K YGI L+YQSRT  HNMYKEYRD +LNGAV Q+  +MA  HR +   IQ
Sbjct: 77  EIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQ 136
Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
           IIRTAT+  K  KR +T    N+ +KFP+V    RP  +K +T YKA+RP  F
Sbjct: 137 IIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189

>pdb|3U5E|S Chain S, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 172

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           +I E +PTK+KN+G+W+RY SR+G HNMYKE RD +   AVE +Y +MA+RHR R   I 
Sbjct: 63  QINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIH 122
Query: 71  IIRTATIPAKL-CKRESTKQFHNSKIKFPLVFKKVRPPTRKLKT--TYKASRPNLF 123
           I++ A I      KR+  KQF    +KFPL       P R  K+  T+   RP+ F
Sbjct: 123 ILKVAEIEKTADVKRQYVKQFLTKDLKFPL-------PHRVQKSTKTFSYKRPSTF 171

>pdb|3ZF7|S Chain S, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 179

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 21  KNYGIWLRYQS-RTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPA 79
           +NY + + Y S R GY +M KE+RD    GAV Q Y ++ASRHR R   I+++   +IP 
Sbjct: 74  RNYSVDIAYYSQRCGYTHMVKEFRDVCKAGAVSQAYNDLASRHRARYHNIEVLGVKSIPN 133
Query: 80  KLCKRESTKQFHNSKIKFPLVFKKVRPP 107
              +R +  QFH   + FPL+ ++V+ P
Sbjct: 134 HEVRRLNVAQFHPHNLSFPLLQRRVKAP 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
3iz5_S	178	60S ribosomal protein L18A (L18AE); eukaryotic rib	2e-51
4a18_X	189	RPL18A, 60S ribosomal protein L36; ribosome, eukar	1e-47
3u5e_S	172	L18A, 60S ribosomal protein L20-A; translation, ri	2e-43
4adx_G	78	RPLX; ribosome, protein synthesis; 6.60A {Methanot	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X Length = 189

 Score =  150 bits (380), Expect = 1e-47
 Identities = 60/113 (53%), Positives = 76/113 (67%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           EI+EK+   +K YGI L+YQSRT  HNMYKEYRD +LNGAV Q+  +MA  HR +   IQ
Sbjct: 77  EIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQ 136

Query: 71  IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
           IIRTAT+  K  KR +T    N+ +KFP+V    RP  +K +T YKA+RP  F
Sbjct: 137 IIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189

>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S Length = 172

 Score =  139 bits (351), Expect = 2e-43
 Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 6/114 (5%)

Query: 11  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
           +I E +PTK+KN+G+W+RY SR+G HNMYKE RD +   AVE +Y +MA+RHR R   I 
Sbjct: 63  QINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIH 122

Query: 71  IIRTATI-PAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
           I++ A I      KR+  KQF    +KFPL  +      +K   T+   RP+ F
Sbjct: 123 ILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRPSTF 171

>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A Length = 78

 Score = 53.0 bits (127), Expect = 9e-11
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 19 KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIP 78
          K K + +  ++          KE          E++Y+E  S+HRV    ++I     I 
Sbjct: 4  KTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEIS 63

Query: 79 AKLCKRESTKQ 89
           +  +    K 
Sbjct: 64 PEEVQDPVVKA 74

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 23/153 (15%), Positives = 38/153 (24%), Gaps = 47/153 (30%)

Query: 10  MEIFEKNPTKI----------KNYGIWL------RYQSRTGYHNMYKEYRDTTLNGAVEQ 53
                    ++           NY  +L        +  +    MY E RD   N    Q
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--Q 124

Query: 54  MYTEMASRHRVRSPCIQIIRTA---------------------TIPAKLCKRESTKQFHN 92
           ++ +    +  R      +R A                      +   +C     +   +
Sbjct: 125 VFAK---YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 93  SKIKFPLVFKKVRPPT---RKLKTTYKASRPNL 122
            KI F L  K    P      L+       PN 
Sbjct: 182 FKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
3iz5_S	178	60S ribosomal protein L18A (L18AE); eukaryotic rib	100.0
4a18_X	189	RPL18A, 60S ribosomal protein L36; ribosome, eukar	100.0
3u5e_S	172	L18A, 60S ribosomal protein L20-A; translation, ri	100.0
3j21_l	77	50S ribosomal protein LX; archaea, archaeal, KINK-	100.0
4adx_G	78	RPLX; ribosome, protein synthesis; 6.60A {Methanot	100.0

>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X

Probab=100.00  E-value=1.6e-59  Score=366.77  Aligned_cols=114  Identities=53%  Similarity=0.816  Sum_probs=110.2

Q ss_pred             eEeccCCCceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeeecCCCCCCccccc
Q 033222           10 MEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQ   89 (124)
Q Consensus        10 ~eI~Ek~p~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikq   89 (124)
                      -||+|++|++|||||||||||||||||||||||||+|++|||+|||+|||||||||+++|||++|+||+++||+||+|+|
T Consensus        76 ~~i~Ek~p~~VKNfGIwlrYdSRsgtHNmYKEYRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~rrp~vkQ  155 (189)
T 4a18_X           76 NEIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQIIRTATLEPKDIKRPATLA  155 (189)
T ss_dssp             EEECCSCTTSCEEEEEEEEEECSSCEEEEEEEEEESCHHHHHHHHHHHHHHTTCCCGGGCEEEEEEECCGGGCCCHHHHT
T ss_pred             EEEccCCCceeEEeeEEEEEcccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEEEEEEECHHHccCHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCcccceecccCCCCcccCCCeeecCCcCC
Q 033222           90 FHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF  123 (124)
Q Consensus        90 f~~~~ikFPl~~r~~~~~~~~~~~~F~~~rP~t~  123 (124)
                      |+++||||||||++++.+.++++.+|+++||+||
T Consensus       156 f~~skikFPl~hrv~~~~~~~~~~~F~~~rP~t~  189 (189)
T 4a18_X          156 MRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF  189 (189)
T ss_dssp             TCCSCCEEECCCCCCCCSSGGGCCSSCSSCCCCC
T ss_pred             HhccCCccccceeecccccccccceeeccCCCCC
Confidence            9999999999999998776667889999999997

>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S 4b6a_S

Probab=100.00  E-value=2.4e-59  Score=361.52  Aligned_cols=110  Identities=45%  Similarity=0.769  Sum_probs=106.0

Q ss_pred             eEeccCCCceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeee-cCCCCCCcccc
Q 033222           10 MEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATI-PAKLCKRESTK   88 (124)
Q Consensus        10 ~eI~Ek~p~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI-~~~e~~r~~ik   88 (124)
                      -||+|++|++|||||||||||||||||||||||||+|++|||+|||+|||||||||+++|||++|+|| +++||+||+|+
T Consensus        62 ~~i~Ek~p~~VKNfGIwlrYdSrsgtHNmYKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~~rrp~vk  141 (172)
T 3u5e_S           62 NQINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVK  141 (172)
T ss_dssp             EECCCSSTTSCEEEEEEEEEECSSCEEEEEEEEEESSHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECCSTTSCCCHHHH
T ss_pred             EEEccCCCceeEEeeEEEEEcccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEeeeEEEcchhcCCChhhH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999 89999999999


Q ss_pred             ccccCCCcccceecccCCCCcccCCCeeecCCcCCC
Q 033222           89 QFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM  124 (124)
Q Consensus        89 qf~~~~ikFPl~~r~~~~~~~~~~~~F~~~rP~t~~  124 (124)
                      ||+++||||||||++++.     +++|+++||+||+
T Consensus       142 Qf~~skikFPl~hrv~~~-----~~~F~~~rP~t~~  172 (172)
T 3u5e_S          142 QFLTKDLKFPLPHRVQKS-----TKTFSYKRPSTFY  172 (172)
T ss_dssp             GGGSTTCEEECCSCCCCC-----SSSCBSSCCCCCC
T ss_pred             hhhcCCCccccccccccC-----CCceeccCCCCCC
Confidence            999999999999999874     3679999999996

>3j21_l 50S ribosomal protein LX; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.9e-38  Score=216.66  Aligned_cols=74  Identities=19%  Similarity=0.298  Sum_probs=72.4

Q ss_pred             eeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeeecCCCCCCcccccccc
Q 033222           19 KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHN   92 (124)
Q Consensus        19 ~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikqf~~   92 (124)
                      .|||||||++|+|++|+|||||||||+|++|||||||+||||||++|+++|+|++|+||+++||+||+|+||+.
T Consensus         2 ~vK~f~V~g~y~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gsrHr~kr~~I~I~~V~eI~~~e~~~~~vkql~~   75 (77)
T 3j21_l            2 KVKVFRVHGYFEKNGRKFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPEEAEDIVVRRLSL   75 (77)
T ss_dssp             CCCEEEEEEEEEETTEEEEEEEEEECSSHHHHHHHHHHHHHHHTTCCTTSEEEEEEEEECTTCCSSHHHHHHTT
T ss_pred             ceEEEEEEEEEEcCCCeEeEEEEEecCCHhHHHHHHHHHHhhhhCCCccceEEEEEEEeCHHHcCCHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999974

>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A

Probab=100.00  E-value=4e-36  Score=206.46  Aligned_cols=75  Identities=19%  Similarity=0.252  Sum_probs=73.0

Q ss_pred             ceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeeecCCCCCCcccccccc
Q 033222           18 TKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHN   92 (124)
Q Consensus        18 ~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikqf~~   92 (124)
                      ..|||||||++|+|++|+|||||||||++++||||+|||||||||++|+++|+|++|+||+++||+||.|+||+.
T Consensus         3 ~~vK~f~V~g~~~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gSrHrvkr~~I~I~~V~eI~~~e~~~~~ikql~~   77 (78)
T 4adx_G            3 MKTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISPEEVQDPVVKALVQ   77 (78)
T ss_pred             ceeEEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCccceEEEEEEEeCHHHcCCHHHHHHhc
Confidence            369999999999999999999999999999999999999999999999999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d2jxta1	78	d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Met	9e-28

>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 78

class: Alpha and beta proteins (a+b)
fold: RplX-like
superfamily: RplX-like
family: RplX-like
domain: Ribosomal protein LX, RplX
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 95.2 bits (237), Expect = 9e-28
 Identities = 14/73 (19%), Positives = 26/73 (35%)

Query: 18 TKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATI 77
           K K + +  ++          KE          E++Y+E  S+HRV    ++I     I
Sbjct: 3  MKTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEI 62

Query: 78 PAKLCKRESTKQF 90
            +  +    K  
Sbjct: 63 SPEEVQDPVVKAL 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d2jxta1	78	Ribosomal protein LX, RplX {Methanobacterium therm	100.0

>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: RplX-like
superfamily: RplX-like
family: RplX-like
domain: Ribosomal protein LX, RplX
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=6e-34  Score=194.06  Aligned_cols=75  Identities=19%  Similarity=0.252  Sum_probs=73.4

Q ss_pred             ceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeeecCCCCCCcccccccc
Q 033222           18 TKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHN   92 (124)
Q Consensus        18 ~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikqf~~   92 (124)
                      ..|||||||..|.|++|+|||||||||+++++|+++|||||||||++++++|+|++|+||+++||++|.|+||++
T Consensus         3 m~vK~y~V~G~~~~~~~~q~f~ke~ra~~~~~A~e~~Ys~~gSrHr~kr~~I~I~~V~eI~~~e~~~p~vkqll~   77 (78)
T d2jxta1           3 MKTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISPEEVQDPVVKALVQ   77 (78)
T ss_dssp             CSCEEEEEEEEEEETTEEEEEEEEEEESSHHHHHHHHHHHHHHHTCCCGGGEEEEEEEEECGGGCCCHHHHHHHH
T ss_pred             ceEEEEEEEEEEEcCCCccceEEEEecCCHHHHHHHHHHHHhhhcCCCccceEEEEEEEEChHHcCCHHHHHHhh
Confidence            579999999999999999999999999999999999999999999999999999999999999999999999985