Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 123
pfam03641 130
pfam03641, Lysine_decarbox, Possible lysine decarb
4e-47 TIGR00730 178
TIGR00730, TIGR00730, TIGR00730 family protein
1e-35 COG1611 205
COG1611, COG1611, Predicted Rossmann fold nucleoti
4e-26
>gnl|CDD|217655 pfam03641, Lysine_decarbox, Possible lysine decarboxylase
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Score = 147 bits (373), Expect = 4e-47
Identities = 51/89 (57%), Positives = 70/89 (78%)
Query: 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFI 60
MH+RKA MAR +D F+ALPGG+GTLEEL E++TW QLGIH KP+ L+N +GYY+ LL FI
Sbjct: 42 MHERKAAMARLADAFVALPGGFGTLEELFEILTWIQLGIHQKPIILLNPNGYYDPLLEFI 101
Query: 61 DKAVDDGFISPSQRSILVSAPNAKELVQK 89
D V++GFISP+ R +++ + +E V+K
Sbjct: 102 DHMVEEGFISPAARELIIVVDDPEEAVEK 130
The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear. Length = 130
>gnl|CDD|129813 TIGR00730, TIGR00730, TIGR00730 family protein
Back Show alignment and domain information
Score = 119 bits (301), Expect = 1e-35
Identities = 45/93 (48%), Positives = 68/93 (73%)
Query: 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFI 60
MH+RKA MA +D FIA+PGG+GTLEEL EV+TWAQLGIH KP+ L NV+G+++ L+ ++
Sbjct: 86 MHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWL 145
Query: 61 DKAVDDGFISPSQRSILVSAPNAKELVQKLEEY 93
++ +GFIS S ++ EL+++++ Y
Sbjct: 146 KYSIQEGFISESHLKLIHVVSRPDELIEQVQNY 178
This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by This model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions [Hypothetical proteins, Conserved]. Length = 178
>gnl|CDD|224527 COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Back Show alignment and domain information
Score = 96.2 bits (240), Expect = 4e-26
Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIH-DKPVGLI-NVDGYYNSLLN 58
+RK M R++D FI LPGG+GTLEEL E +T Q G+H P LI N +G++ LL
Sbjct: 100 FAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLE 159
Query: 59 FID-KAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHDG 99
F+D + +G IS + R +L+ +A+E + + +Y+P +
Sbjct: 160 FLDPHLIVEGLISEADRELLIVVDDAEEAIDAILKYLPPDEP 201
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
123
TIGR00730 178
conserved hypothetical protein, DprA/Smf-related,
100.0 PF03641 133
Lysine_decarbox: Possible lysine decarboxylase; In
100.0 COG1611 205
Predicted Rossmann fold nucleotide-binding protein
99.93 TIGR00725 159
conserved hypothetical protein, DprA/Smf-related,
99.89 PF05014 113
Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer
95.88 PF13528 318
Glyco_trans_1_3: Glycosyl transferase family 1
94.64 TIGR00732 220
dprA DNA protecting protein DprA. Disruption of th
94.62 PF04101 167
Glyco_tran_28_C: Glycosyltransferase family 28 C-t
91.6 PRK13608 391
diacylglycerol glucosyltransferase; Provisional
88.86 PF11071 141
DUF2872: Protein of unknown function (DUF2872); In
87.49 PLN02605 382
monogalactosyldiacylglycerol synthase
86.57 TIGR03646 144
YtoQ_fam YtoQ family protein. Members of this fami
84.25 cd03784 401
GT1_Gtf_like This family includes the Gtfs, a grou
84.08 PRK13609 380
diacylglycerol glucosyltransferase; Provisional
83.96 TIGR00661 321
MJ1255 conserved hypothetical protein. This model
83.95 TIGR01133 348
murG undecaprenyldiphospho-muramoylpentapeptide be
83.57 CHL00200 263
trpA tryptophan synthase alpha subunit; Provisiona
80.4 cd03785 350
GT1_MurG MurG is an N-acetylglucosaminyltransferas
80.08
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2
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Probab=100.00 E-value=5.6e-34 Score=215.94 Aligned_cols=93 Identities=48% Similarity=0.925 Sum_probs=90.8
Q ss_pred CchHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEc
Q 033246 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 80 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 80 (123)
|++||.+|++.|||||+||||+|||||++++|+|.|+|+|+||++++|.+|||++|++|+++|+++||+++++.+.+.++
T Consensus 86 ~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~~~~~~ 165 (178)
T TIGR00730 86 MHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLKLIHVV 165 (178)
T ss_pred HHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcCcEEEc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhh
Q 033246 81 PNAKELVQKLEEY 93 (123)
Q Consensus 81 dd~ee~l~~l~~~ 93 (123)
||++|+++.|+++
T Consensus 166 d~~~e~~~~i~~~ 178 (178)
T TIGR00730 166 SRPDELIEQVQNY 178 (178)
T ss_pred CCHHHHHHHHHhC
Confidence 9999999999763
This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway
Back Show alignment and domain information
Probab=100.00 E-value=6.3e-34 Score=205.83 Aligned_cols=90 Identities=46% Similarity=0.858 Sum_probs=86.6
Q ss_pred CchHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCC-cEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEE
Q 033246 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDK-PVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 79 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~k-Piilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~ 79 (123)
|++||.+|++.|||||+||||+|||+|+|++|+|+|+|.++| ||+|+|.+|||+++++++++|+++||+++++.+.+.+
T Consensus 43 ~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~ 122 (133)
T PF03641_consen 43 MFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHF 122 (133)
T ss_dssp HHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEE
T ss_pred hHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEE
Confidence 689999999999999999999999999999999999999877 9999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHH
Q 033246 80 APNAKELVQKL 90 (123)
Q Consensus 80 ~dd~ee~l~~l 90 (123)
+||++|++++|
T Consensus 123 ~d~~~e~~~~i 133 (133)
T PF03641_consen 123 VDDPEEALEYI 133 (133)
T ss_dssp ESSHHHHHHHH
T ss_pred eCCHHHHHhhC
Confidence 99999999876
It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
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Probab=99.93 E-value=4.2e-26 Score=176.42 Aligned_cols=96 Identities=40% Similarity=0.794 Sum_probs=92.8
Q ss_pred CchHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCC--CCcEEEEeCCCccHHHHHHHH-HHHHcCCCCcccccce
Q 033246 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIH--DKPVGLINVDGYYNSLLNFID-KAVDDGFISPSQRSIL 77 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~--~kPiilln~~gf~~~l~~~l~-~~~~~gfi~~~~~~~i 77 (123)
|++||.+|.++|||||+||||+||+||+|++|+|.|++.| .+|+++++.++||+++.++++ +++.++++++.+.+++
T Consensus 100 ~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~~i~~~~i~~~~~~~~ 179 (205)
T COG1611 100 FAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPHLIVEGLISEADRELL 179 (205)
T ss_pred HHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHHHHHhhcCChhhhhhe
Confidence 6899999999999999999999999999999999999998 999999999999999999999 9999999999999999
Q ss_pred EEcCCHHHHHHHHHhhcCC
Q 033246 78 VSAPNAKELVQKLEEYVPL 96 (123)
Q Consensus 78 ~~~dd~ee~l~~l~~~~~~ 96 (123)
.++||++++++.+..+.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 180 IVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred eeecCHHHHHHHHHHhccc
Confidence 9999999999999998765
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1
Back Show alignment and domain information
Probab=99.89 E-value=3.3e-23 Score=154.33 Aligned_cols=78 Identities=21% Similarity=0.357 Sum_probs=68.2
Q ss_pred CchHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEc
Q 033246 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 80 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 80 (123)
|++||++|.+.|||||++|||+|||+|++++|+ ++|||+++|.+|||+++++++ +.+.+|++ + .+.++
T Consensus 81 ~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------~~kpv~~l~~~g~~~~~l~~~--~~~~~~~~-~---~~~~~ 148 (159)
T TIGR00725 81 NFARNFILVRSADVVVSVGGGYGTAIEILGAYA------LGGPVVVLRGTGGWTDRLSQV--LIEGVYLD-E---RVIVE 148 (159)
T ss_pred cchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------cCCCEEEEECCCcchHHHHHH--Hhcccccc-c---eeEec
Confidence 478999999999999999999999999999998 589999999999999998864 44444444 3 69999
Q ss_pred CCHHHHHHHH
Q 033246 81 PNAKELVQKL 90 (123)
Q Consensus 81 dd~ee~l~~l 90 (123)
+||+|+++++
T Consensus 149 ~~~~e~~~~~ 158 (159)
T TIGR00725 149 ITPAEAVKLA 158 (159)
T ss_pred CCHHHHHHhh
Confidence 9999999865
This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2
Back Show alignment and domain information
Probab=95.88 E-value=0.025 Score=39.07 Aligned_cols=42 Identities=38% Similarity=0.351 Sum_probs=35.6
Q ss_pred hHHHHHHHhcCEEEEcCCc----hhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 3 QRKAEMARNSDCFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 3 eRK~~m~~~sDa~I~lPGG----~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
+|-...++.||++|+...| .||.-|+..+..+ +|||+++..+
T Consensus 53 ~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~al------gkpv~~~~~d 98 (113)
T PF05014_consen 53 ERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYAL------GKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHHT------TSEEEEEECC
T ss_pred HHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHC------CCEEEEEEcC
Confidence 4556778999998887766 9999999999976 8999999875
4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Back Show alignment and domain information
Probab=94.64 E-value=0.38 Score=37.66 Aligned_cols=69 Identities=29% Similarity=0.329 Sum_probs=48.7
Q ss_pred HHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcC---
Q 033246 5 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP--- 81 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~d--- 81 (123)
-.-++..||++|.. ||++|+-|.. ..+||++++-..+++++...- +.+.+.|.. ...+
T Consensus 244 ~~~~m~~ad~vIs~-~G~~t~~Ea~---------~~g~P~l~ip~~~~~EQ~~~a-~~l~~~G~~--------~~~~~~~ 304 (318)
T PF13528_consen 244 FAELMAAADLVISK-GGYTTISEAL---------ALGKPALVIPRPGQDEQEYNA-RKLEELGLG--------IVLSQED 304 (318)
T ss_pred HHHHHHhCCEEEEC-CCHHHHHHHH---------HcCCCEEEEeCCCCchHHHHH-HHHHHCCCe--------EEccccc
Confidence 34467788888776 8899998876 238999999887777776552 556666644 3323
Q ss_pred -CHHHHHHHHHh
Q 033246 82 -NAKELVQKLEE 92 (123)
Q Consensus 82 -d~ee~l~~l~~ 92 (123)
+++.+.+.|++
T Consensus 305 ~~~~~l~~~l~~ 316 (318)
T PF13528_consen 305 LTPERLAEFLER 316 (318)
T ss_pred CCHHHHHHHHhc
Confidence 67888777765
>TIGR00732 dprA DNA protecting protein DprA
Back Show alignment and domain information
Probab=94.62 E-value=0.25 Score=38.59 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=53.7
Q ss_pred chHHHHHHHhcCEEEEcCCc--hhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEE
Q 033246 2 HQRKAEMARNSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 79 (123)
Q Consensus 2 ~eRK~~m~~~sDa~I~lPGG--~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~ 79 (123)
..|.+++..+||++|++-.| -||+..+-.++.+ +|||+.+-.. .+++.-+--..++++| . ..
T Consensus 146 ~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~~------gr~v~~~pg~-~~~~~~~G~~~Li~~G-A--------~~ 209 (220)
T TIGR00732 146 PKRNRIISGLSRAVLVVEAPLKSGALITARYALEQ------GREVFAYPGD-LNSPESDGCHKLIEQG-A--------AL 209 (220)
T ss_pred HHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHHh------CCcEEEEcCC-CCCccchHHHHHHHCC-C--------EE
Confidence 36999999999999999987 5999999888865 8999999653 5554444445677766 2 34
Q ss_pred cCCHHHHHHH
Q 033246 80 APNAKELVQK 89 (123)
Q Consensus 80 ~dd~ee~l~~ 89 (123)
+.+++++++.
T Consensus 210 i~~~~d~~~~ 219 (220)
T TIGR00732 210 ITSAKDILET 219 (220)
T ss_pred ECCHHHHHHh
Confidence 5677777653
Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases
Back Show alignment and domain information
Probab=91.60 E-value=0.98 Score=32.44 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=30.7
Q ss_pred HHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccH-HHHHHHHHHHHcCCC
Q 033246 5 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYN-SLLNFIDKAVDDGFI 69 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~-~l~~~l~~~~~~gfi 69 (123)
-..+++.|| +||--||.||+-|+.. .++|.|++-..+-++ +-...-+.+.+.|..
T Consensus 66 m~~~m~~aD-lvIs~aG~~Ti~E~l~---------~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~ 121 (167)
T PF04101_consen 66 MAELMAAAD-LVISHAGAGTIAEALA---------LGKPAIVIPLPGAADNHQEENAKELAKKGAA 121 (167)
T ss_dssp HHHHHHHHS-EEEECS-CHHHHHHHH---------CT--EEEE--TTT-T-CHHHHHHHHHHCCCC
T ss_pred HHHHHHHcC-EEEeCCCccHHHHHHH---------cCCCeeccCCCCcchHHHHHHHHHHHHcCCc
Confidence 345788899 6777788999988762 489999885543221 222222446666643
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Back Show alignment and domain information
Probab=88.86 E-value=2.9 Score=34.37 Aligned_cols=68 Identities=24% Similarity=0.235 Sum_probs=41.5
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKE 85 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee 85 (123)
.-++..||++|.=|||. | ++|+++. ++|+++++..+- ....+ -..+.+.|+. ..++|+++
T Consensus 268 ~~~~~~aDl~I~k~gg~-t---l~EA~a~------G~PvI~~~~~pg-qe~~N-~~~~~~~G~g--------~~~~~~~~ 327 (391)
T PRK13608 268 NEWMASSQLMITKPGGI-T---ISEGLAR------CIPMIFLNPAPG-QELEN-ALYFEEKGFG--------KIADTPEE 327 (391)
T ss_pred HHHHHhhhEEEeCCchH-H---HHHHHHh------CCCEEECCCCCC-cchhH-HHHHHhCCcE--------EEeCCHHH
Confidence 45689999999888875 6 4455554 899999975321 11111 1223344432 34668888
Q ss_pred HHHHHHhh
Q 033246 86 LVQKLEEY 93 (123)
Q Consensus 86 ~l~~l~~~ 93 (123)
+.+.+.+.
T Consensus 328 l~~~i~~l 335 (391)
T PRK13608 328 AIKIVASL 335 (391)
T ss_pred HHHHHHHH
Confidence 87777665
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis
Back Show alignment and domain information
Probab=87.49 E-value=3.8 Score=30.33 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=47.2
Q ss_pred hHHHHHHHhcCEEEEcCCc-hhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcC
Q 033246 3 QRKAEMARNSDCFIALPGG-YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 81 (123)
Q Consensus 3 eRK~~m~~~sDa~I~lPGG-~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~d 81 (123)
-|.+.+++.||.+|+.=|- +=-=+-.|.+=... ...||+|++.....--||.+. + .....++.
T Consensus 64 iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~---AlgKplI~lh~~~~~HpLKEv-d------------a~A~a~~e 127 (141)
T PF11071_consen 64 IRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAA---ALGKPLITLHPEELHHPLKEV-D------------AAALAVAE 127 (141)
T ss_pred HHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHH-h------------HhhHhhhC
Confidence 4888999999999998773 11111112111111 138999999987666666653 2 22336799
Q ss_pred CHHHHHHHHH
Q 033246 82 NAKELVQKLE 91 (123)
Q Consensus 82 d~ee~l~~l~ 91 (123)
+|+++++.|+
T Consensus 128 t~~Qvv~iL~ 137 (141)
T PF11071_consen 128 TPEQVVEILR 137 (141)
T ss_pred CHHHHHHHHH
Confidence 9999999875
This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
>PLN02605 monogalactosyldiacylglycerol synthase
Back Show alignment and domain information
Probab=86.57 E-value=4 Score=33.32 Aligned_cols=70 Identities=26% Similarity=0.349 Sum_probs=41.9
Q ss_pred HHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHH
Q 033246 5 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAK 84 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~e 84 (123)
...++..||++|.-||| +|+-| +++ ..+|+|+.+.-. -...-+ .+.+.+.|.- ..+.|++
T Consensus 276 ~~~l~~aaDv~V~~~g~-~ti~E---Ama------~g~PvI~~~~~p-gqe~gn-~~~i~~~g~g--------~~~~~~~ 335 (382)
T PLN02605 276 MEEWMGACDCIITKAGP-GTIAE---ALI------RGLPIILNGYIP-GQEEGN-VPYVVDNGFG--------AFSESPK 335 (382)
T ss_pred HHHHHHhCCEEEECCCc-chHHH---HHH------cCCCEEEecCCC-ccchhh-HHHHHhCCce--------eecCCHH
Confidence 34567899999986654 67644 554 389999987411 000111 1233333321 2458999
Q ss_pred HHHHHHHhhc
Q 033246 85 ELVQKLEEYV 94 (123)
Q Consensus 85 e~l~~l~~~~ 94 (123)
++.+.+.+..
T Consensus 336 ~la~~i~~ll 345 (382)
T PLN02605 336 EIARIVAEWF 345 (382)
T ss_pred HHHHHHHHHH
Confidence 9888887764
>TIGR03646 YtoQ_fam YtoQ family protein
Back Show alignment and domain information
Probab=84.25 E-value=5.7 Score=29.51 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=46.8
Q ss_pred hHHHHHHHhcCEEEEcCCc-hhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcC
Q 033246 3 QRKAEMARNSDCFIALPGG-YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 81 (123)
Q Consensus 3 eRK~~m~~~sDa~I~lPGG-~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~d 81 (123)
-|.+.+++.||.+|+.=|- +=--+-.|.+=... ...||+|++.....--+|.+. + .....++.
T Consensus 67 iRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aa---AlgKplI~lh~~~~~HpLKEv-d------------aaA~avae 130 (144)
T TIGR03646 67 IRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAA---ALGKPLIILRPEELIHPLKEV-D------------NKAQAVVE 130 (144)
T ss_pred HHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHH-h------------HHHHHHhc
Confidence 4888999999999998763 11111122211111 138999999987666666553 2 22235789
Q ss_pred CHHHHHHHHH
Q 033246 82 NAKELVQKLE 91 (123)
Q Consensus 82 d~ee~l~~l~ 91 (123)
+|+++++.|+
T Consensus 131 tp~Qvv~iL~ 140 (144)
T TIGR03646 131 TPEQAIETLK 140 (144)
T ss_pred CHHHHHHHHH
Confidence 9999999874
Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin
Back Show alignment and domain information
Probab=84.08 E-value=5.4 Score=32.25 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=42.6
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHH
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKEL 86 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~ 86 (123)
.++..+|+|| --||.||+-|.. .+.+|++++-. +.|+. .+-+.+.+.|.-..-.... -+++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal---------~~GvP~v~~P~--~~dQ~-~~a~~~~~~G~g~~l~~~~----~~~~~l 362 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAAL---------RAGVPQLVVPF--FGDQP-FWAARVAELGAGPALDPRE----LTAERL 362 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHH---------HcCCCEEeeCC--CCCcH-HHHHHHHHCCCCCCCCccc----CCHHHH
Confidence 3566788877 667789998876 35899999963 34433 2335677766321111111 267777
Q ss_pred HHHHHhh
Q 033246 87 VQKLEEY 93 (123)
Q Consensus 87 l~~l~~~ 93 (123)
.+.+++.
T Consensus 363 ~~al~~~ 369 (401)
T cd03784 363 AAALRRL 369 (401)
T ss_pred HHHHHHH
Confidence 6666654
Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Back Show alignment and domain information
Probab=83.96 E-value=7.6 Score=31.29 Aligned_cols=69 Identities=26% Similarity=0.264 Sum_probs=41.6
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKE 85 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee 85 (123)
..++..||++|.-|||. | ++|+++. .+|+|+++..+-.. ....+.+.+.|+ .....|+++
T Consensus 268 ~~l~~~aD~~v~~~gg~-t---~~EA~a~------g~PvI~~~~~~g~~--~~n~~~~~~~G~--------~~~~~~~~~ 327 (380)
T PRK13609 268 DELFRVTSCMITKPGGI-T---LSEAAAL------GVPVILYKPVPGQE--KENAMYFERKGA--------AVVIRDDEE 327 (380)
T ss_pred HHHHHhccEEEeCCCch-H---HHHHHHh------CCCEEECCCCCCcc--hHHHHHHHhCCc--------EEEECCHHH
Confidence 45678999998767754 5 4455554 89999876422211 111123344454 244678888
Q ss_pred HHHHHHhhc
Q 033246 86 LVQKLEEYV 94 (123)
Q Consensus 86 ~l~~l~~~~ 94 (123)
+.+.|....
T Consensus 328 l~~~i~~ll 336 (380)
T PRK13609 328 VFAKTEALL 336 (380)
T ss_pred HHHHHHHHH
Confidence 888777653
>TIGR00661 MJ1255 conserved hypothetical protein
Back Show alignment and domain information
Probab=83.95 E-value=8.2 Score=30.74 Aligned_cols=54 Identities=26% Similarity=0.315 Sum_probs=36.1
Q ss_pred HHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCC
Q 033246 5 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFI 69 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi 69 (123)
-.-++..||++|.- ||.+|+.|. +. +.+|++++...+.++...+ .+.+.+.|..
T Consensus 241 ~~~~l~~ad~vI~~-~G~~t~~Ea---~~------~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~~ 294 (321)
T TIGR00661 241 FKELIKNAELVITH-GGFSLISEA---LS------LGKPLIVIPDLGQFEQGNN-AVKLEDLGCG 294 (321)
T ss_pred HHHHHHhCCEEEEC-CChHHHHHH---HH------cCCCEEEEcCCCcccHHHH-HHHHHHCCCE
Confidence 34566778887776 677886664 43 4899999987666665544 2556666643
This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
Back Show alignment and domain information
Probab=83.57 E-value=9.8 Score=29.78 Aligned_cols=73 Identities=18% Similarity=0.135 Sum_probs=39.2
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcC--CH
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP--NA 83 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~d--d~ 83 (123)
.-++..||++|. ++|..|+-|. ++ ..+|+|..+..+.=.......+.+.+. ....+.-.. ++
T Consensus 245 ~~~l~~ad~~v~-~~g~~~l~Ea---~~------~g~Pvv~~~~~~~~~~~~~~~~~i~~~------~~G~~~~~~~~~~ 308 (348)
T TIGR01133 245 AAAYAAADLVIS-RAGASTVAEL---AA------AGVPAILIPYPYAADDQYYNAKFLEDL------GAGLVIRQKELLP 308 (348)
T ss_pred HHHHHhCCEEEE-CCChhHHHHH---HH------cCCCEEEeeCCCCccchhhHHHHHHHC------CCEEEEecccCCH
Confidence 346788999886 5554555554 43 489999987643211111101122221 112222233 48
Q ss_pred HHHHHHHHhhc
Q 033246 84 KELVQKLEEYV 94 (123)
Q Consensus 84 ee~l~~l~~~~ 94 (123)
+++.+.+.+..
T Consensus 309 ~~l~~~i~~ll 319 (348)
T TIGR01133 309 EKLLEALLKLL 319 (348)
T ss_pred HHHHHHHHHHH
Confidence 88888887764
RL J Bacteriol 1993 Mar;175(6):1841-3
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Back Show alignment and domain information
Probab=80.40 E-value=11 Score=30.30 Aligned_cols=45 Identities=31% Similarity=0.627 Sum_probs=30.5
Q ss_pred cCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHH-----HHHHHHHcC
Q 033246 18 LPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN-----FIDKAVDDG 67 (123)
Q Consensus 18 lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~-----~l~~~~~~g 67 (123)
|-+|+ |++.+++.+.-.+ +.++.|++++ +||++++. +++.+.+.|
T Consensus 70 L~~g~-~~~~~~~~~~~~r-~~~~~p~vlm---~Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 70 LKQGI-NLNKILSILSEVN-GEIKAPIVIF---TYYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred HHcCC-CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhCHHHHHHHHHHcC
Confidence 33444 5777777776554 3467899887 49998766 577777665
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis
Back Show alignment and domain information
Probab=80.08 E-value=16 Score=28.60 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=39.3
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCc-cHHHHHHHHHHHHcCCCCcccccceEEcC--C
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGY-YNSLLNFIDKAVDDGFISPSQRSILVSAP--N 82 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf-~~~l~~~l~~~~~~gfi~~~~~~~i~~~d--d 82 (123)
..++..||++|. ++|.+| +.|+++. .+|++.....+. .+.-...-+.+.+.| ...+.-.+ |
T Consensus 247 ~~~l~~ad~~v~-~sg~~t---~~Eam~~------G~Pvv~~~~~~~~~~~~~~~~~~l~~~g------~g~~v~~~~~~ 310 (350)
T cd03785 247 AAAYAAADLVIS-RAGAST---VAELAAL------GLPAILIPLPYAADDHQTANARALVKAG------AAVLIPQEELT 310 (350)
T ss_pred HHHHHhcCEEEE-CCCHhH---HHHHHHh------CCCEEEeecCCCCCCcHHHhHHHHHhCC------CEEEEecCCCC
Confidence 346778999885 555566 4555654 899998764321 111000012233322 11222222 7
Q ss_pred HHHHHHHHHhhc
Q 033246 83 AKELVQKLEEYV 94 (123)
Q Consensus 83 ~ee~l~~l~~~~ 94 (123)
++++.+.|....
T Consensus 311 ~~~l~~~i~~ll 322 (350)
T cd03785 311 PERLAAALLELL 322 (350)
T ss_pred HHHHHHHHHHHh
Confidence 888888887764
It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 123
d1t35a_ 179
c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus
5e-30 d2q4oa1 183
c.129.1.1 (A:8-190) Hypothetical protein At2g37210
1e-28 d1ydhb_ 181
c.129.1.1 (B:) Hypothetical protein At5g11950 {Tha
1e-26 d1weka_ 208
c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA16
6e-23 d1weha_ 171
c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA02
5e-17 d1rcua_ 170
c.129.1.1 (A:) Hypothetical protein TM1055 {Thermo
2e-16
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Length = 179
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]
Score = 104 bits (259), Expect = 5e-30
Identities = 40/93 (43%), Positives = 67/93 (72%)
Query: 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFI 60
MH+RKA+M+ +D FI++PGG+GT EEL EV+ WAQ+GIH KP+GL NV+GY+ ++ +
Sbjct: 87 MHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMV 146
Query: 61 DKAVDDGFISPSQRSILVSAPNAKELVQKLEEY 93
++ +GF + S ++ S+ EL+++++ Y
Sbjct: 147 KYSIQEGFSNESHLKLIHSSSRPDELIEQMQNY 179
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 183
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At2g37210/T2N18.3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 100 bits (250), Expect = 1e-28
Identities = 79/92 (85%), Positives = 88/92 (95%)
Query: 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFI 60
MHQRKAEMA++SD FIALPGGYGTLEELLEVITWAQLGIHDKPVGL+NVDGYYNSLL+FI
Sbjct: 92 MHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFI 151
Query: 61 DKAVDDGFISPSQRSILVSAPNAKELVQKLEE 92
DKAV++GFISP+ R I+VSAP AKELV+KLEE
Sbjct: 152 DKAVEEGFISPTAREIIVSAPTAKELVKKLEE 183
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 181
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 95.9 bits (238), Expect = 1e-26
Identities = 63/93 (67%), Positives = 79/93 (84%)
Query: 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFI 60
MH+RKA MA+ ++ FIALPGGYGT+EELLE+ITW+QLGIH K VGL+NVDGYYN+LL
Sbjct: 88 MHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALF 147
Query: 61 DKAVDDGFISPSQRSILVSAPNAKELVQKLEEY 93
D V++GFI P R+I+VSAP AKEL++K+EEY
Sbjct: 148 DTGVEEGFIKPGARNIVVSAPTAKELMEKMEEY 180
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Length = 208
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1465 (TTHA1644)
species: Thermus thermophilus [TaxId: 274]
Score = 86.7 bits (214), Expect = 6e-23
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFI 60
RK R + F+ LPGG+GTL+EL EV+ Q + + GY+ L+ ++
Sbjct: 117 FFVRKVLFVRYAVGFVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLDRGYWEGLVRWL 176
Query: 61 DKAVDDGFISPSQRSILVSAPNAKELVQKLE 91
D + P + +E+VQ L+
Sbjct: 177 AFLRDQKAVGPEDLQLFRLTDEPEEVVQALK 207
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Length = 171
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1887 (TTHA0294)
species: Thermus thermophilus [TaxId: 274]
Score = 70.6 bits (172), Expect = 5e-17
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFI 60
+ QR + ++ALPGG GTL EL+ L + VD Y+ LL
Sbjct: 87 LPQRIGRLLDLGAGYLALPGGVGTLAELVLAWNLLYL--RRGVGRPLAVDPYWLGLL--- 141
Query: 61 DKAVDDGFISPSQRSILVSAPNAKELVQKLEE 92
G I+P +L + ++L + L
Sbjct: 142 ---KAHGEIAPEDVGLLRVVADEEDLRRFLRS 170
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Length = 170
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TM1055
species: Thermotoga maritima [TaxId: 2336]
Score = 69.0 bits (168), Expect = 2e-16
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFI 60
R + RN+D +++ G GT E+L + PV L+ G + ++
Sbjct: 86 FQMRSFVLLRNADVVVSIGGEIGTAIEILGAYALGK------PVILLRGTGGWTDRIS-- 137
Query: 61 DKAVDDGFISPSQRSILVSAPNAKELVQKLEE 92
+D ++ + + A +E VQ +E+
Sbjct: 138 QVLIDGKYLDNRRIVEIHQAWTVEEAVQIIEQ 169
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 123
d1t35a_ 179
Hypothetical protein YvdD {Bacillus subtilis [TaxI
100.0 d1ydhb_ 181
Hypothetical protein At5g11950 {Thale cress (Arabi
100.0 d2q4oa1 183
Hypothetical protein At2g37210/T2N18.3 {Thale cres
100.0 d1weka_ 208
Hypothetical protein TT1465 (TTHA1644) {Thermus th
99.97 d1rcua_ 170
Hypothetical protein TM1055 {Thermotoga maritima [
99.93 d1weha_ 171
Hypothetical protein TT1887 (TTHA0294) {Thermus th
99.92 d2f62a1 152
Nucleoside 2-deoxyribosyltransferase {Trypanosoma
95.75 d1s2da_ 167
Purine transdeoxyribosylase {Lactobacillus helveti
95.4 d1f8ya_ 156
Nucleoside 2-deoxyribosyltransferase {Lactobacillu
94.26 d1vl1a_ 218
6-phosphogluconolactonase {Thermotoga maritima [Ta
85.89
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=9.5e-36 Score=221.77 Aligned_cols=93 Identities=43% Similarity=0.940 Sum_probs=91.0
Q ss_pred CchHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEc
Q 033246 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 80 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 80 (123)
|++||..|++.|||||+||||+|||||++|+|+|.|+|.|+|||+|+|.+|||++|++|+++++++||+++++.+.+.++
T Consensus 87 ~~~Rk~~m~~~sdafI~lPGG~GTLdEl~e~l~~~ql~~~~kPiil~n~~gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 166 (179)
T d1t35a_ 87 MHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSS 166 (179)
T ss_dssp HHHHHHHHHHHCSEEEECSCCHHHHHHHHHHHHTTSCSSCCCCEEEECGGGTTHHHHHHHHHHHHTTSSCTTHHHHEEEE
T ss_pred HHHHHHHHHHhcCeEEEecCccchhhHHHHHHHHHHhhccCCCeEeecCCccHHHHHHHHHHHHHcCCCChHHhCcEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhh
Q 033246 81 PNAKELVQKLEEY 93 (123)
Q Consensus 81 dd~ee~l~~l~~~ 93 (123)
+||+|+++.|++|
T Consensus 167 ~~~~e~i~~L~~~ 179 (179)
T d1t35a_ 167 SRPDELIEQMQNY 179 (179)
T ss_dssp SSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhC
Confidence 9999999999875
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=6.5e-35 Score=217.90 Aligned_cols=94 Identities=67% Similarity=1.182 Sum_probs=91.8
Q ss_pred CchHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEc
Q 033246 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 80 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 80 (123)
|++||..|++.||||||||||+|||||++|+|+|.|++.|+||++++|.+|||++|++|+++++++||+++++.+.+.++
T Consensus 88 ~~~Rk~~m~~~sdafIvlPGG~GTLdEl~e~l~l~ql~~~~kpiiiln~~gfw~~l~~~l~~~~~~g~i~~~~~~~~~~~ 167 (181)
T d1ydhb_ 88 MHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSA 167 (181)
T ss_dssp HHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEE
T ss_pred HHHHHHHHHHhCeeEEEeCCccchHHHHHHHHHHHHhcccCCCeEEEecCccHHHHHHHHHHHHHCCCCCHHHcCeEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhc
Q 033246 81 PNAKELVQKLEEYV 94 (123)
Q Consensus 81 dd~ee~l~~l~~~~ 94 (123)
|||+|+++.|++|.
T Consensus 168 d~~ee~~~~l~~~t 181 (181)
T d1ydhb_ 168 PTAKELMEKMEEYT 181 (181)
T ss_dssp SSHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999999873
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At2g37210/T2N18.3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=7.7e-35 Score=217.82 Aligned_cols=92 Identities=86% Similarity=1.349 Sum_probs=89.9
Q ss_pred CchHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEc
Q 033246 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 80 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 80 (123)
|++||..|++.|||||+||||+|||||+||+|+|.|++.|+|||+++|.+|||+++++|+++++++||+++++.+.+.++
T Consensus 92 ~~~Rk~~m~~~sdafIvlPGG~GTLdEl~e~lt~~ql~~~~kpiiiln~~gfw~~l~~~l~~~~~~g~i~~~~~~~~~~~ 171 (183)
T d2q4oa1 92 MHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSA 171 (183)
T ss_dssp HHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHHHHHHTSCCCCEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEE
T ss_pred HHHHHHHHHHhCceEEEeCCcchhHHHHHHHHHHHHhcCCCCCeEEeecCccHHHHHHHHHHHHHCCCCChHHcCcEEEc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHh
Q 033246 81 PNAKELVQKLEE 92 (123)
Q Consensus 81 dd~ee~l~~l~~ 92 (123)
|||+|+++.|++
T Consensus 172 d~~~e~~~~l~~ 183 (183)
T d2q4oa1 172 PTAKELVKKLEE 183 (183)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHhC
Confidence 999999999873
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1465 (TTHA1644)
species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=4.2e-32 Score=206.86 Aligned_cols=91 Identities=32% Similarity=0.554 Sum_probs=87.5
Q ss_pred CchHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhC-CCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEE
Q 033246 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 79 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg-~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~ 79 (123)
|++||.+|++.|||||+||||+|||||+|++|+|.|++ .|+|||+++| +|||+++++|+++++++||+++++.+.+.+
T Consensus 117 ~~~Rk~~m~~~sDafI~lPGG~GTLdEl~e~lt~~ql~~~~~kPIil~~-~gfw~~l~~~l~~~~~~gfi~~~~~~~i~v 195 (208)
T d1weka_ 117 FFVRKVLFVRYAVGFVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLD-RGYWEGLVRWLAFLRDQKAVGPEDLQLFRL 195 (208)
T ss_dssp HHHHHHHHHHTEEEEEECSCCHHHHHHHHHHHHHHHTTSSCCCCEEEEC-HHHHHHHHHHHHHHHHTTSSCTTGGGGSEE
T ss_pred HHHHHHHHHhCCCceEEecCcchhHHHHHHHHHHHhccccCcCcccccC-CcHHHHHHHHHHHHHHCCCCChHHhCcEEE
Confidence 68999999999999999999999999999999999998 5799999998 689999999999999999999999999999
Q ss_pred cCCHHHHHHHHHh
Q 033246 80 APNAKELVQKLEE 92 (123)
Q Consensus 80 ~dd~ee~l~~l~~ 92 (123)
++||+|+++.|++
T Consensus 196 ~d~~ee~i~~L~s 208 (208)
T d1weka_ 196 TDEPEEVVQALKA 208 (208)
T ss_dssp ESCHHHHHHHHHC
T ss_pred eCCHHHHHHHhhC
Confidence 9999999999874
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TM1055
species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=8.4e-27 Score=171.94 Aligned_cols=84 Identities=24% Similarity=0.351 Sum_probs=78.9
Q ss_pred CchHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEc
Q 033246 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 80 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 80 (123)
|++||..|++.|||||+||||+|||+|++++|+| .|||+++|.+|||++++. +.+.+++|+++++.+.++++
T Consensus 86 ~~~Rk~~m~~~sda~I~lPGG~GTl~El~~a~~l------~KPiilln~~g~w~~~i~--~~~~~~~~i~~~~~~~i~~~ 157 (170)
T d1rcua_ 86 FQMRSFVLLRNADVVVSIGGEIGTAIEILGAYAL------GKPVILLRGTGGWTDRIS--QVLIDGKYLDNRRIVEIHQA 157 (170)
T ss_dssp HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHT------TCCEEEETTSCHHHHHGG--GGCBTTTBSSTTCCSCEEEE
T ss_pred hhhhHHHHhhcccceeeeccccchHHHHHHHHHh------CCceEEecCCCchHHHHH--HHHHHCCCCCHHHcCeEEEe
Confidence 5799999999999999999999999999999987 689999999999999876 56889999999999999999
Q ss_pred CCHHHHHHHHHh
Q 033246 81 PNAKELVQKLEE 92 (123)
Q Consensus 81 dd~ee~l~~l~~ 92 (123)
+|++|++++|++
T Consensus 158 ~~~ee~~~~l~~ 169 (170)
T d1rcua_ 158 WTVEEAVQIIEQ 169 (170)
T ss_dssp SSHHHHHHHHHT
T ss_pred CCHHHHHHHHHc
Confidence 999999999975
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1887 (TTHA0294)
species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=8e-27 Score=172.81 Aligned_cols=84 Identities=29% Similarity=0.404 Sum_probs=73.6
Q ss_pred CchHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEc
Q 033246 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 80 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 80 (123)
|++||..|++.|||||+||||+|||||++++|++.|++. ||++++|.+|||++++. ..||+++++.+.+.++
T Consensus 87 ~~~Rk~~m~~~sda~I~lPGG~GTLdEl~e~~~~~~l~~--~~~~~~~~~g~w~~ll~------~~g~i~~~~~~~~~i~ 158 (171)
T d1weha_ 87 LPQRIGRLLDLGAGYLALPGGVGTLAELVLAWNLLYLRR--GVGRPLAVDPYWLGLLK------AHGEIAPEDVGLLRVV 158 (171)
T ss_dssp HHHHHHHHHHHEEEEEECSCCHHHHHHHHHHHHHHHTCS--SCSCCEEECGGGGGTCC------CBTTBCHHHHTTSEEC
T ss_pred HHHHHHHHHHcccceeecCCccchHHHHHHHHHHHHcCC--CCCcCeecCcccHHHHh------hCCCCCHHHcCcEEEE
Confidence 689999999999999999999999999999998888774 33333445689999854 5899999999999999
Q ss_pred CCHHHHHHHHHh
Q 033246 81 PNAKELVQKLEE 92 (123)
Q Consensus 81 dd~ee~l~~l~~ 92 (123)
+||+|++++|++
T Consensus 159 ~~~~e~~~~l~~ 170 (171)
T d1weha_ 159 ADEEDLRRFLRS 170 (171)
T ss_dssp CSHHHHHHHHHT
T ss_pred CCHHHHHHHHhc
Confidence 999999999986
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]
Probab=95.75 E-value=0.017 Score=40.07 Aligned_cols=85 Identities=19% Similarity=0.149 Sum_probs=54.2
Q ss_pred hHHHHHHHhcCEEEEc--C--C---chhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHH-HcCCC-----
Q 033246 3 QRKAEMARNSDCFIAL--P--G---GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAV-DDGFI----- 69 (123)
Q Consensus 3 eRK~~m~~~sDa~I~l--P--G---G~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~-~~gfi----- 69 (123)
++-..+++.||++|+. | | -.||.-|+-.++.+ +|||+.+..+ ++...+...... ..|++
T Consensus 51 ~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~al------gKPVi~~~~d--~r~~~~~~~~~~d~~g~~vedfg 122 (152)
T d2f62a1 51 QKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL------NKMVLTFTSD--RRNMREKYGSGVDKDNLRVEGFG 122 (152)
T ss_dssp HHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT------TCEEEEECSC--CSCHHHHHTSSBCTTSCBCCCSS
T ss_pred HHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHC------CCeEEEEecC--chHHHHhcccccCCCCceeecCC
Confidence 3455678999999995 2 4 58999999999986 8999999754 444433221111 11111
Q ss_pred --Cccc-ccceEEcCCHHHHHHHHHhhcC
Q 033246 70 --SPSQ-RSILVSAPNAKELVQKLEEYVP 95 (123)
Q Consensus 70 --~~~~-~~~i~~~dd~ee~l~~l~~~~~ 95 (123)
..-. ...+..+.+.+++++.+....|
T Consensus 123 ~~~NLMl~~~~~~~~~~e~~l~~~~~~~p 151 (152)
T d2f62a1 123 LPFNLMLYDGVEVFDSFESAFKYFLANFP 151 (152)
T ss_dssp CSSCGGGCCSSCEESSHHHHHHHHHHHSC
T ss_pred CccchhhccchheecCHHHHHHHHHhhCC
Confidence 1111 1234567889999988876554
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.40 E-value=0.0097 Score=41.43 Aligned_cols=41 Identities=22% Similarity=0.168 Sum_probs=33.0
Q ss_pred HHHHHHHhcCEEEEc-CC---chhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 4 RKAEMARNSDCFIAL-PG---GYGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 4 RK~~m~~~sDa~I~l-PG---G~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
|-..+++.||++|+. +| .-||.-|+..++.+ +|||+++..+
T Consensus 74 ~D~~~i~~sD~vIA~ldg~~~D~GTa~EiG~A~a~------gKPvi~~~~d 118 (167)
T d1s2da_ 74 NDLTGISNATCGVFLYDMDQLDDGSAFEIGFMRAM------HKPVILVPFT 118 (167)
T ss_dssp HHHHHHHHCSEEEEEEESSSCCHHHHHHHHHHHHT------TCCEEEEEEC
T ss_pred HHHHHHHHCCEEEEEeCCCCCCccHHHHHHHHHHC------CCeEEEEecC
Confidence 455678889999885 44 44999999999985 9999999753
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Lactobacillus leichmannii [TaxId: 28039]
Probab=94.26 E-value=0.036 Score=38.18 Aligned_cols=39 Identities=21% Similarity=0.062 Sum_probs=32.2
Q ss_pred HHHHHhcCEEEEcCCc----hhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 6 AEMARNSDCFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG----~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
..+++.||++|+.-.| .||.-|+--++++ +|||+++..+
T Consensus 72 ~~~i~~aD~via~ldg~~~D~Gta~EiG~A~a~------gKpvi~~~~~ 114 (156)
T d1f8ya_ 72 LNGIKTNDIMLGVYIPDEEDVGLGMELGYALSQ------GKYVLLVIPD 114 (156)
T ss_dssp HHHHHTSSEEEEECCGGGCCHHHHHHHHHHHHT------TCEEEEEECG
T ss_pred HHHHHHCCEEEEEeCCCCCCCCHHHHHHHHHHc------CCcEEEEecC
Confidence 4578899999985444 5999999999986 9999999654
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: NagB-like
domain: 6-phosphogluconolactonase
species: Thermotoga maritima [TaxId: 2336]
Probab=85.89 E-value=1 Score=31.62 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=48.5
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccH------HHHHHHH-HHHHcCCCCcccccceEE
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYN------SLLNFID-KAVDDGFISPSQRSILVS 79 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~------~l~~~l~-~~~~~gfi~~~~~~~i~~ 79 (123)
.+.+...+.|+|||| .|.-.+++.++ +.+..=+.+-++..+.+|- .-..+++ .+.+..-+++.....+..
T Consensus 26 ~~~~~~~~~i~lsGG-~tp~~~y~~L~--~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~ 102 (218)
T d1vl1a_ 26 LLEEKDKIFVVLAGG-RTPLPVYEKLA--EQKFPWNRIHFFLSDERYVPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDT 102 (218)
T ss_dssp HHHHCSCEEEEECCS-TTHHHHHHHHT--TSCCCGGGEEEEESEEESSCTTSTTCHHHHHHHHTTTTSCCCGGGEECCCT
T ss_pred HHHhCCCEEEEECCC-hhHHHHHHHHH--hcCCCcceEEEEecceecccCCcccchHHHHHHHhhhhcccchheeeeccc
Confidence 345667899999999 69999999875 2233324567777777772 2333343 233333344444444444
Q ss_pred cCCHHHHHHHHH
Q 033246 80 APNAKELVQKLE 91 (123)
Q Consensus 80 ~dd~ee~l~~l~ 91 (123)
..++++..+..+
T Consensus 103 ~~~~~~~~~~y~ 114 (218)
T d1vl1a_ 103 SLPIEKACEKYE 114 (218)
T ss_dssp TSCHHHHHHHHH
T ss_pred cccHHHHHHHhh
Confidence 556766555443
