Citrus Sinensis ID: 033269

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MQKLDYNHLVRLIPSHLFKFCGRVEKQCVGENAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPKEHHEHVSSFIEQLDGNEIYRGLPFCYFQKTK
Secondary Structure (PSIPRED)
ccccccHHHHHHcHHHHHHHHHHHHHHHHccccccEEEEEEccccEEEEEEEcccccccccccEEEcccccccHHHHHHHccccEEEEEEccccHHHHHHHHHHHccccccccccEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHccHHHHHHcccEEEEcccccccccEcEccccccEEEEEEEccccccEccccHHcHHHHcHHHHHHHHHccEEEEEEcccHHHHHHHHHHHHHccccEEEccccEEEEEccc
Coil and Loop (DISEMBL)
MQKLDYNHLVRLIPSHLFKFCGRVekqcvgenaglgilgldvgnkYIGVSLFkrhgnevepltkfdrakadqELPQLIEKHKVLGMVvnmpkehheHVSSFIEqldgneiyrglpfcyfqktk
Flexible Loop (DISEMBL)
MQKLDYNHLVRLIPSHLFKFCGRVEKQCVGENAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPKEHHEHVSSFIeqldgneiyRGLPFCYFQKTK
Low Complexity Region (SEG)
MQKLDYNHLVRLIPSHLFKFCGRVEKQCVGENAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPKEHHEHVSSFIEQLDGNEIYRGLPFCYFQKTK
Disordered region (IsUnstruct)
****DYNHLVRLIPSHLFKFCGRVEKQCVGENAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFD*******LPQLIEKHKVLGMVVNMPKEHHEHVSSFIEQLDGNEIYRGLPFCYF****
Disordered Region (DISOPRED)
*****YNHLVRLIPSHLFKFCGRVEKQCVGENAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPKEHHEHVSSFIEQLDGNEIYRGLPFCYFQKT*
Disordered Region (DISEMBL)
MQKLDYNHLVRLIPSHLFKFCGRVEKQCVGENAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPKEHHEHVSSFIEQLDGNEIYRGLPFCYFQKTK
Disordered Region (DISPRO)
*QKLDYNHLVRLIPSHLFKFCGRVEKQCVGENAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPKEHHEHVSSFIEQLDGNEIYRGLPFCYFQKT*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQKLDYNHLVRLIPSHLFKFCGRVEKQCVGENAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPKEHHEHVSSFIEQLDGNEIYRGLPFCYFQKTK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
309791342	148	Holliday junction resolvase YqgF [Oscill	0.650	0.540	0.344	0.0005

>gi|309791342|ref|ZP_07685865.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG-6] gi|308226652|gb|EFO80357.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6]

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 13/93 (13%)

Query: 37  ILGLDVGNKYIGVSLFKRHGNEVEPLTKFD---RAKADQELPQLIEKHKVLGMVVNMP-- 91
           +LGLDVG++ IGV+L    G    PLT  +   R++A   + +L+ +H+V G+VV +P  
Sbjct: 6   LLGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAITMIARLVREHEVQGIVVGLPLT 65

Query: 92  -----KEHHEHVSSFIEQLDGNEIYRGLPFCYF 119
                    E   SF ++L   E   GLP   F
Sbjct: 66  LRGEIGPQAEQTRSFAQEL---ERQVGLPVMLF 95

Source: Oscillochloris trichoides DG-6

Species: Oscillochloris trichoides

Genus: Oscillochloris

Family: Oscillochloridaceae

Order: Chloroflexales

Class: Chloroflexi

Phylum: Chloroflexi

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
UNIPROTKB|Q3AEN4	138	CHY_0542 "Putative Holliday ju	0.455	0.405	0.389	0.00021
TIGR_CMR|CHY_0542	138	CHY_0542 "conserved hypothetic	0.455	0.405	0.389	0.00021

UNIPROTKB|Q3AEN4 CHY_0542 "Putative Holliday junction resolvase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query:    37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KAD-QELPQLIEKHKVLGMVVNMPK 92
             +LGLDVG+K IGV+L    G   + LT   R   K D +E+ ++I+ H V  +V+  P+
Sbjct:     3 VLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYPR 61

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0542 CHY_0542 "conserved hypothetical protein TIGR00250" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query:    37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KAD-QELPQLIEKHKVLGMVVNMPK 92
             +LGLDVG+K IGV+L    G   + LT   R   K D +E+ ++I+ H V  +V+  P+
Sbjct:     3 VLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYPR 61


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.142   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      123       123   0.00091  102 3  11 22  0.36    31
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  533 (57 KB)
  Total size of DFA:  127 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.42u 0.17s 12.59t   Elapsed:  00:00:01
  Total cpu time:  12.42u 0.17s 12.59t   Elapsed:  00:00:01
  Start:  Fri May 10 21:11:58 2013   End:  Fri May 10 21:11:59 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	123
pfam03652	134	pfam03652, UPF0081, Uncharacterized protein family	4e-06
smart00732	99	smart00732, YqgFc, Likely ribonuclease with RNase	1e-05
COG0816	141	COG0816, COG0816, Predicted endonuclease involved	6e-05
PRK00109	138	PRK00109, PRK00109, Holliday junction resolvase-li	9e-05
TIGR00250	130	TIGR00250, RNAse_H_YqgF, RNAse H-fold protein YqgF	2e-04

>gnl|CDD|217659 pfam03652, UPF0081, Uncharacterized protein family (UPF0081)

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query: 37  ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ---ELPQLIEKHKVLGMVVNMPK- 92
           ILGLDVG K IGV++    G    PL    R   +    EL +LI++ +  G+VV +P  
Sbjct: 3   ILGLDVGTKRIGVAISDPLGILASPLETIRRKNGNPDLEELAELIKEWQPDGIVVGLPLN 62

Query: 93  ---EHHE---HVSSFIEQL 105
                 E    V  F  +L
Sbjct: 63  MDGSEGEMTKRVRKFARRL 81

Length = 134

>gnl|CDD|128971 smart00732, YqgFc, Likely ribonuclease with RNase H fold

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 37  ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ---ELPQLIEKHKVLGMVVNMPKE 93
           +LGLD G K IGV++    G   +PL    R   +     L +LI+K++   +V+ +P  
Sbjct: 3   VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKKYQPDLIVIGLPLN 62

Query: 94  HHEHVSSFIEQLDGNEI--YRGLPFCY 118
            +   S   E+     +     LP   
Sbjct: 63  MNGTASRETEEAFAELLKERFNLPVVL 89

YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions. Length = 99

>gnl|CDD|223886 COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 14/93 (15%)

Query: 37  ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD----QELPQLIEKHKVLGMVVNMPK 92
           IL LDVG K IGV++    G+   PL    R          L +L+++++V  +VV +P 
Sbjct: 4   ILALDVGTKRIGVAVSDILGSLASPLETIKRKNGKPQDFNALLKLVKEYQVDTVVVGLPL 63

Query: 93  EHH-------EHVSSFIEQLDGNEIYRGLPFCY 118
                     E    F E+L        LP   
Sbjct: 64  NMDGTEGPRAELARKFAERLKKRF---NLPVVL 93

subtilis) [DNA replication, recombination, and repair]. Length = 141

>gnl|CDD|234639 PRK00109, PRK00109, Holliday junction resolvase-like protein; Reviewed

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 13/92 (14%)

Query: 37  ILGLDVGNKYIGVSLFKRHGNEVEPLT--KFDRAKAD-QELPQLIEKHKVLGMVVNMPK- 92
           ILGLDVG K IGV++    G   +PL   K +    D   L +LI++ +  G+VV +P  
Sbjct: 6   ILGLDVGTKRIGVAVSDPLGGTAQPLETIKRNNGTPDWDRLEKLIKEWQPDGLVVGLPLN 65

Query: 93  ----EHH--EHVSSFIEQLDGNEIYRGLPFCY 118
               E    E    F  +L+G     GLP   
Sbjct: 66  MDGTEGPRTERARKFANRLEGR---FGLPVVL 94

Length = 138

>gnl|CDD|129352 TIGR00250, RNAse_H_YqgF, RNAse H-fold protein YqgF

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE---LPQLIEKHKVLGMVVNMPK 92
          LGLD G K IGV+     G   + +        + +   + +L+++     +VV +P 
Sbjct: 1  LGLDFGTKSIGVAGQDITGWTAQGIPTIKAQDGEPDWSRIEELLKEWTPDKIVVGLPL 58

This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC [Unknown function, General]. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
PF03652	135	UPF0081: Uncharacterised protein family (UPF0081);	99.95
PRK00109	138	Holliday junction resolvase-like protein; Reviewed	99.95
COG0816	141	Predicted endonuclease involved in recombination (	99.94
TIGR00250	130	RNAse_H_YqgF RNAse H-fold protein YqgF. This prote	99.93
smart00732	99	YqgFc Likely ribonuclease with RNase H fold. YqgF	99.49
PRK00039	164	ruvC Holliday junction resolvase; Reviewed	98.29
cd00529	154	RuvC_resolvase Holliday junction resolvases (HJRs)	97.79
PF02075	149	RuvC: Crossover junction endodeoxyribonuclease Ruv	97.79
COG2183	780	Tex Transcriptional accessory protein [Transcripti	97.5
TIGR00228	156	ruvC crossover junction endodeoxyribonuclease RuvC	97.41
PF14639	150	YqgF: Holliday-junction resolvase-like of SPT6 ; P	96.78
COG0817	160	RuvC Holliday junction resolvasome, endonuclease s	96.51
COG1940	314	NagC Transcriptional regulator/sugar kinase [Trans	95.27
PRK05082	291	N-acetylmannosamine kinase; Provisional	94.36
PF04312	138	DUF460: Protein of unknown function (DUF460); Inte	94.24
PF07318	343	DUF1464: Protein of unknown function (DUF1464); In	94.14
PF01548	144	DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 T	93.93
COG1548	330	Predicted transcriptional regulator/sugar kinase [	93.88
COG1214	220	Inactive homolog of metal-dependent proteases, put	93.32
PRK09557	301	fructokinase; Reviewed	93.19
PRK13310	303	N-acetyl-D-glucosamine kinase; Provisional	91.77
PF14239	176	RRXRR: RRXRR protein	91.66
PRK00292	316	glk glucokinase; Provisional	91.48
TIGR03725	202	bact_YeaZ universal bacterial protein YeaZ. This f	90.77
COG2433	652	Uncharacterized conserved protein [Function unknow	90.39
PRK09698	302	D-allose kinase; Provisional	89.79
PRK12408	336	glucokinase; Provisional	89.66
TIGR00744	318	ROK_glcA_fam ROK family protein (putative glucokin	89.19
PRK13321	256	pantothenate kinase; Reviewed	87.15
PRK13311	256	N-acetyl-D-glucosamine kinase; Provisional	86.54
PRK13320	244	pantothenate kinase; Reviewed	85.73
PF00480	179	ROK: ROK family; InterPro: IPR000600 A family of b	85.38
PRK13318	258	pantothenate kinase; Reviewed	84.85
TIGR00555	279	panK_eukar pantothenate kinase, eukaryotic/staphyl	82.87
PRK14101	638	bifunctional glucokinase/RpiR family transcription	82.55
PRK09604	332	UGMP family protein; Validated	81.39
PF04848	143	Pox_A22: Poxvirus A22 protein; InterPro: IPR006932	81.22
PF05188	137	MutS_II: MutS domain II; InterPro: IPR007860 Misma	80.38

>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination

Probab=99.95  E-value=4.8e-28  Score=177.01  Aligned_cols=86  Identities=34%  Similarity=0.542  Sum_probs=80.0

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc--ccc-chHHHHhhcCcCeEEEeccCC-ChH------HHHHHHHH
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--ADQ-ELPQLIEKHKVLGMVVNMPKE-HHE------HVSSFIEQ  104 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~--~~~-~L~~li~~~~i~~iVVGlP~~-dGt------~v~~f~~~  104 (123)
                      ||+||||||+||||+|+||+.+.+|+|+.++.+.+  .++ .|.+++++|++++||||+|++ ||+      .+++|+++
T Consensus         1 mriL~lD~G~kriGiAvsd~~~~~a~pl~~i~~~~~~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~   80 (135)
T PF03652_consen    1 MRILGLDYGTKRIGIAVSDPLGIIASPLETIPRRNREKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEE   80 (135)
T ss_dssp             -EEEEEEECSSEEEEEEEETTTSSEEEEEEEEECCCCCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHH
T ss_pred             CeEEEEEeCCCeEEEEEecCCCCeEeeeEEEECCCCchHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHH
Confidence            79999999999999999999999999999999654  457 999999999999999999999 998      99999999


Q ss_pred             HhhcccCCCCCEEEecCC
Q 033269          105 LDGNEIYRGLPFCYFQKT  122 (123)
Q Consensus       105 L~~~~~~~~lpV~l~DEr  122 (123)
                      |+++++  ++||++||||
T Consensus        81 L~~~~~--~ipV~~~DEr   96 (135)
T PF03652_consen   81 LKKRFP--GIPVILVDER   96 (135)
T ss_dssp             HHHHH---TSEEEEEECS
T ss_pred             HHHhcC--CCcEEEECCC
Confidence            999997  8999999998

The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.

>PRK00109 Holliday junction resolvase-like protein; Reviewed

Probab=99.95  E-value=2.4e-27  Score=173.90  Aligned_cols=87  Identities=33%  Similarity=0.561  Sum_probs=81.2

Q ss_pred             CCceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc--ccc-chHHHHhhcCcCeEEEeccCC-ChH------HHHHHH
Q 033269           33 AGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--ADQ-ELPQLIEKHKVLGMVVNMPKE-HHE------HVSSFI  102 (123)
Q Consensus        33 ~~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~--~~~-~L~~li~~~~i~~iVVGlP~~-dGt------~v~~f~  102 (123)
                      ++|++||||||+||||+|+||+.+.+|+|+.++.+.+  .++ .|.+++++|++++||||+|++ ||+      .+++|+
T Consensus         2 ~~~~iLalD~G~kriGvAv~d~~~~~a~pl~~i~~~~~~~~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~   81 (138)
T PRK00109          2 PSGRILGLDVGTKRIGVAVSDPLGGTAQPLETIKRNNGTPDWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFA   81 (138)
T ss_pred             CCCcEEEEEeCCCEEEEEEecCCCCEEcCEEEEEcCCCchHHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHH
Confidence            4688999999999999999999999999999998754  347 999999999999999999999 998      889999


Q ss_pred             HHHhhcccCCCCCEEEecCC
Q 033269          103 EQLDGNEIYRGLPFCYFQKT  122 (123)
Q Consensus       103 ~~L~~~~~~~~lpV~l~DEr  122 (123)
                      ++|++++   ++||++||||
T Consensus        82 ~~L~~~~---~~~v~~~DEr   98 (138)
T PRK00109         82 NRLEGRF---GLPVVLVDER   98 (138)
T ss_pred             HHHHHHh---CCCEEEEcCC
Confidence            9999988   8999999998

>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B

Probab=99.94  E-value=5.4e-27  Score=173.42  Aligned_cols=87  Identities=31%  Similarity=0.482  Sum_probs=81.7

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeCccc---cc-chHHHHhhcCcCeEEEeccCC-ChH------HHHHHH
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKA---DQ-ELPQLIEKHKVLGMVVNMPKE-HHE------HVSSFI  102 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~~---~~-~L~~li~~~~i~~iVVGlP~~-dGt------~v~~f~  102 (123)
                      ++++||||||+||||+|+||..+.+|+|++++.+.+.   ++ .|.+++++|+++.+|||+|+| +|+      .+++|+
T Consensus         1 ~~~ilalD~G~KrIGvA~sd~~~~~A~pl~~i~~~~~~~~~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~   80 (141)
T COG0816           1 GMRILALDVGTKRIGVAVSDILGSLASPLETIKRKNGKPQDFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFA   80 (141)
T ss_pred             CceEEEEecCCceEEEEEecCCCccccchhhheeccccHhhHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHH
Confidence            5799999999999999999999999999999997662   67 999999999999999999999 987      799999


Q ss_pred             HHHhhcccCCCCCEEEecCCC
Q 033269          103 EQLDGNEIYRGLPFCYFQKTK  123 (123)
Q Consensus       103 ~~L~~~~~~~~lpV~l~DEr~  123 (123)
                      ++|++++   ++||++||||-
T Consensus        81 ~~L~~r~---~lpv~l~DERl   98 (141)
T COG0816          81 ERLKKRF---NLPVVLWDERL   98 (141)
T ss_pred             HHHHHhc---CCCEEEEcCcc
Confidence            9999999   89999999993

subtilis) [DNA replication, recombination, and repair]

>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF

Probab=99.93  E-value=7.5e-26  Score=164.52  Aligned_cols=82  Identities=24%  Similarity=0.440  Sum_probs=77.1

Q ss_pred             EEEecCCCeEEEEEeeCCCceeecceeeeCcc--ccc-chHHHHhhcCcCeEEEeccCC-ChH------HHHHHHHHHhh
Q 033269           38 LGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--ADQ-ELPQLIEKHKVLGMVVNMPKE-HHE------HVSSFIEQLDG  107 (123)
Q Consensus        38 LglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~--~~~-~L~~li~~~~i~~iVVGlP~~-dGt------~v~~f~~~L~~  107 (123)
                      ||||||+||||+|+||+.+.+|+|+.++.+.+  .++ .|.+++++|+++.||||+|++ ||+      .+++|+++|++
T Consensus         1 laiD~G~kriGvA~~d~~~~~a~pl~~i~~~~~~~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~   80 (130)
T TIGR00250         1 LGLDFGTKSIGVAGQDITGWTAQGIPTIKAQDGEPDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEG   80 (130)
T ss_pred             CeEccCCCeEEEEEECCCCCEEeceEEEEecCCcHHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999998744  447 999999999999999999999 998      89999999999


Q ss_pred             cccCCCCCEEEecCC
Q 033269          108 NEIYRGLPFCYFQKT  122 (123)
Q Consensus       108 ~~~~~~lpV~l~DEr  122 (123)
                      ++   ++||++||||
T Consensus        81 ~~---~~~v~~~DEr   92 (130)
T TIGR00250        81 RF---GVPVVLWDER   92 (130)
T ss_pred             Hh---CCCEEEEcCC
Confidence            98   8999999998

This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.

>smart00732 YqgFc Likely ribonuclease with RNase H fold

Probab=99.49  E-value=2.4e-13  Score=91.64  Aligned_cols=84  Identities=31%  Similarity=0.481  Sum_probs=72.5

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc--ccc-chHHHHhhcCcCeEEEeccCC-ChH-----HHHHHHHHH
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--ADQ-ELPQLIEKHKVLGMVVNMPKE-HHE-----HVSSFIEQL  105 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~--~~~-~L~~li~~~~i~~iVVGlP~~-dGt-----~v~~f~~~L  105 (123)
                      |++||||+|..+||+|+.|..+.+..+..+....+  ..+ .|.++++++++++|+||.|-. ||+     . ..|.+.|
T Consensus         1 ~~ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~-~~l~~~l   79 (99)
T smart00732        1 KRVLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKKYQPDLIVIGLPLNMNGTASRETE-EAFAELL   79 (99)
T ss_pred             CcEEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHHHH-HHHHHHH
Confidence            46899999999999999999999888777655322  335 999999999999999999999 987     4 7888889


Q ss_pred             hhcccCCCCCEEEecCC
Q 033269          106 DGNEIYRGLPFCYFQKT  122 (123)
Q Consensus       106 ~~~~~~~~lpV~l~DEr  122 (123)
                      ++++   ++||+++||+
T Consensus        80 ~~~~---~~pv~~~nDa   93 (99)
T smart00732       80 KERF---NLPVVLVDER   93 (99)
T ss_pred             HHhh---CCcEEEEeCC
Confidence            8888   8999999997

YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.

>PRK00039 ruvC Holliday junction resolvase; Reviewed

Probab=98.29  E-value=6e-06  Score=62.24  Aligned_cols=84  Identities=15%  Similarity=0.222  Sum_probs=57.4

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceee--cceeeeCcc--------ccc--chHHHHhhcCcCeEEEeccCC--ChHHHH
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVE--PLTKFDRAK--------ADQ--ELPQLIEKHKVLGMVVNMPKE--HHEHVS   99 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~--Pl~~i~~~~--------~~~--~L~~li~~~~i~~iVVGlP~~--dGt~v~   99 (123)
                      ||+|||||||..++|.|+.+..+.-..  -.+++..+.        ..+  +|.+++++|+++.++|=-|+-  |.+.+.
T Consensus         1 ~m~iLGIDPgl~~tG~avi~~~~~~~~~~~~G~i~t~~~~~~~~Rl~~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~   80 (164)
T PRK00039          1 MMRILGIDPGLRRTGYGVIEVEGRRLSYVASGVIRTPSDLDLPERLKQIYDGLSELIDEYQPDEVAIEEVFFNKNPQSAL   80 (164)
T ss_pred             CCEEEEEccccCceeEEEEEecCCeEEEEEeeEEECCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEehhhhccChHHHH
Confidence            689999999999999999987654221  234665322        113  899999999999999988876  555222


Q ss_pred             H------HHHHHhhcccCCCCCEEEec
Q 033269          100 S------FIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus       100 ~------f~~~L~~~~~~~~lpV~l~D  120 (123)
                      .      -+.....+.   ++||..+.
T Consensus        81 ~l~~arGvi~la~~~~---~ipv~ey~  104 (164)
T PRK00039         81 KLGQARGVAILAAAQR---GLPVAEYT  104 (164)
T ss_pred             HHHHHHHHHHHHHHHc---CCCEEEEC
Confidence            2      222333333   78887654

>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination

Probab=97.79  E-value=0.00022  Score=52.74  Aligned_cols=84  Identities=14%  Similarity=0.211  Sum_probs=54.6

Q ss_pred             eEEEEecCCCeEEEEEeeCCCceee--cceeeeCccc--------cc--chHHHHhhcCcCeEEEeccCC--ChHHHHH-
Q 033269           36 GILGLDVGNKYIGVSLFKRHGNEVE--PLTKFDRAKA--------DQ--ELPQLIEKHKVLGMVVNMPKE--HHEHVSS-  100 (123)
Q Consensus        36 riLglD~G~kriGlAvsD~~~~~a~--Pl~~i~~~~~--------~~--~L~~li~~~~i~~iVVGlP~~--dGt~v~~-  100 (123)
                      ||||||||..++|.|+.+..+....  -.+++..+..        .+  .|.+++++|+++.++|=-++-  |.+.+.. 
T Consensus         1 rILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~~~~~~~~rl~~I~~~l~~~i~~~~Pd~vaiE~~~~~~n~~s~~~l   80 (154)
T cd00529           1 RILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTSSDAPLPSRLKTIYDGLNEVIDQFQPDVVAIERVFFAKNPDSALKL   80 (154)
T ss_pred             CEEEEccCcCceEEEEEEeeCCeEEEEEeeEEECCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEEEhhcccChHHHHHH
Confidence            6899999999999999886553222  2346653321        13  899999999999999987654  5442222 


Q ss_pred             -----HHHHHhhcccCCCCCEEEecCC
Q 033269          101 -----FIEQLDGNEIYRGLPFCYFQKT  122 (123)
Q Consensus       101 -----f~~~L~~~~~~~~lpV~l~DEr  122 (123)
                           -+-....+.   ++||..++.+
T Consensus        81 ~~~~Gvi~~~~~~~---~i~v~e~~P~  104 (154)
T cd00529          81 GQARGALILALANR---NLPVFEYTPN  104 (154)
T ss_pred             HHHHHHHHHHHHHc---CCCEEEEccC
Confidence                 122222222   7888877654

HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.

>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []

Probab=97.79  E-value=0.00016  Score=53.46  Aligned_cols=80  Identities=19%  Similarity=0.296  Sum_probs=45.9

Q ss_pred             EEEEecCCCeEEEEEeeCCCce--eecceeeeCccc--------cc--chHHHHhhcCcCeEEEeccCC--ChH------
Q 033269           37 ILGLDVGNKYIGVSLFKRHGNE--VEPLTKFDRAKA--------DQ--ELPQLIEKHKVLGMVVNMPKE--HHE------   96 (123)
Q Consensus        37 iLglD~G~kriGlAvsD~~~~~--a~Pl~~i~~~~~--------~~--~L~~li~~~~i~~iVVGlP~~--dGt------   96 (123)
                      |||||||..++|.|+-+..+.-  .-..++|..+..        .+  +|.+++++|+|+.+++=.|+-  |-+      
T Consensus         1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~I~t~~~~~~~~Rl~~I~~~l~~li~~~~P~~vaiE~~f~~~n~~s~~~l~   80 (149)
T PF02075_consen    1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGTIKTSSKDSLPERLKEIYEELEELIEEYNPDEVAIEEIFFGKNPKSALKLG   80 (149)
T ss_dssp             EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE---S--HHHHHHHHHHHHHHHHHHH--SEEEEEE-S----HHHHHHHH
T ss_pred             CEEECCCCCCeeEEEEEeeCCEEEEEEeCeEECCCCCCHHHHHHHHHHHHHHHHHhhCCCEEEeehhhhccCHHHHHHHH
Confidence            7999999999999999876532  122345653221        13  899999999999999998887  433      


Q ss_pred             HHHHHHHHHhhcccCCCCCEEEe
Q 033269           97 HVSSFIEQLDGNEIYRGLPFCYF  119 (123)
Q Consensus        97 ~v~~f~~~L~~~~~~~~lpV~l~  119 (123)
                      .++-.+.......   ++||..+
T Consensus        81 ~arGvi~l~~~~~---~i~v~~y  100 (149)
T PF02075_consen   81 QARGVILLAAAQR---GIPVFEY  100 (149)
T ss_dssp             HHHHHHHHHHHTT---T--EEEE
T ss_pred             HHHHHHHHHHHHc---CCeEEEE
Confidence            3333333433333   7887754

RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.

>COG2183 Tex Transcriptional accessory protein [Transcription]

Probab=97.50  E-value=0.00059  Score=62.23  Aligned_cols=99  Identities=18%  Similarity=0.243  Sum_probs=71.4

Q ss_pred             hhhhhhhhhccCCCCc-eEEEEecCCCe-EEEEEeeCCCceeecceeeeCcc---cc--c-chHHHHhhcCcCeEEEecc
Q 033269           20 FCGRVEKQCVGENAGL-GILGLDVGNKY-IGVSLFKRHGNEVEPLTKFDRAK---AD--Q-ELPQLIEKHKVLGMVVNMP   91 (123)
Q Consensus        20 ~~~~~~~~~~~~~~~~-riLglD~G~kr-iGlAvsD~~~~~a~Pl~~i~~~~---~~--~-~L~~li~~~~i~~iVVGlP   91 (123)
                      |-+++..-|...|-.+ .+||||||.+. |=+|+.|..|....-..+++.+.   .+  . .|..++..|+|..|.||  
T Consensus       314 F~~nL~~lLl~aP~~~~~~lglDPg~rtG~k~Avvd~tGk~l~~~~Iyp~~p~~~~~~~~~~l~~l~~~~~Ve~iaIG--  391 (780)
T COG2183         314 FAENLKDLLLAAPAKPKATLGLDPGFRTGCKVAVVDDTGKLLDTATIYPHPPVNQSDKAEATLKDLIRKYKVELIAIG--  391 (780)
T ss_pred             HHHHHHHHHhcCCCCCcceeecCCccccccEEEEEcCCCceeceeEEEcCCCccchHHHHHHHHHHHHHhCceEEEEe--
Confidence            4455554555555444 78999999777 77899999987665445555432   11  3 88999999999999999  


Q ss_pred             CCChH---HHHHHHHHHhhcccCCCCCEEEecCC
Q 033269           92 KEHHE---HVSSFIEQLDGNEIYRGLPFCYFQKT  122 (123)
Q Consensus        92 ~~dGt---~v~~f~~~L~~~~~~~~lpV~l~DEr  122 (123)
                        |||   .+..|+..|-+..+.+++..+.+.|.
T Consensus       392 --ngTaSrete~fv~~vl~~~~~~~~~~viVsEa  423 (780)
T COG2183         392 --NGTASRETEKFVADVLKELPKEKVLKVIVSEA  423 (780)
T ss_pred             --cCCcchhHHHHHHHHHHhccCCCCcEEEEccc
Confidence              999   77788877776653236777777774

>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC

Probab=97.41  E-value=0.00074  Score=50.91  Aligned_cols=80  Identities=14%  Similarity=0.194  Sum_probs=52.9

Q ss_pred             EEEEecCCCeEEEEEeeCCCcee--ecceeeeCccc-------cc--chHHHHhhcCcCeEEEeccCC--ChH------H
Q 033269           37 ILGLDVGNKYIGVSLFKRHGNEV--EPLTKFDRAKA-------DQ--ELPQLIEKHKVLGMVVNMPKE--HHE------H   97 (123)
Q Consensus        37 iLglD~G~kriGlAvsD~~~~~a--~Pl~~i~~~~~-------~~--~L~~li~~~~i~~iVVGlP~~--dGt------~   97 (123)
                      |||||||..++|.|+-+..+.-.  .-.++|..++.       .+  .|.+++++|+++.+.|=-++-  |.+      .
T Consensus         1 ILGIDPGl~~tG~gvi~~~~~~~~~v~~G~I~t~~~~~~~RL~~I~~~l~~~i~~y~P~~~aiE~~F~~~N~~sa~~lg~   80 (156)
T TIGR00228         1 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPNYFAIEQVFMAKNADSALKLGQ   80 (156)
T ss_pred             CEeECcccccccEEEEEecCCeEEEEEeeEEECCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeHHhhccCHHHHHHHHH
Confidence            69999999999999988555422  23346653221       13  899999999999999988776  544      3


Q ss_pred             HHHHHHHHhhcccCCCCCEEEe
Q 033269           98 VSSFIEQLDGNEIYRGLPFCYF  119 (123)
Q Consensus        98 v~~f~~~L~~~~~~~~lpV~l~  119 (123)
                      ++--+-......   ++||...
T Consensus        81 arGvilla~~~~---~ipv~Ey   99 (156)
T TIGR00228        81 ARGVAIVAAVNQ---ELPVFEY   99 (156)
T ss_pred             HHHHHHHHHHHc---CCCEEEE
Confidence            333332222223   7888754

Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.

>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A

Probab=96.78  E-value=0.0058  Score=45.50  Aligned_cols=85  Identities=18%  Similarity=0.254  Sum_probs=40.4

Q ss_pred             CceEEEEecCCCe----EEEEEeeCCCceeecceee-eCcc------ccc-chHHHHhhcCcCeEEEeccCCChHHHHHH
Q 033269           34 GLGILGLDVGNKY----IGVSLFKRHGNEVEPLTKF-DRAK------ADQ-ELPQLIEKHKVLGMVVNMPKEHHEHVSSF  101 (123)
Q Consensus        34 ~~riLglD~G~kr----iGlAvsD~~~~~a~Pl~~i-~~~~------~~~-~L~~li~~~~i~~iVVGlP~~dGt~v~~f  101 (123)
                      ..||||+-+|.-+    +-.|+-|..|.+.-- ..+ .+..      .+. .|.+++.+++++.|+||-   ++..++.+
T Consensus         4 ~~rVla~~~g~g~~~~~~~~v~ld~~G~v~d~-~~~~~~~~~~~~~~~~~~~l~~~i~~~kP~vI~v~g---~~~~s~~l   79 (150)
T PF14639_consen    4 GPRVLALSWGSGDGDDAVFCVVLDENGEVLDH-LKLVYNERDRERKEEDMERLKKFIEKHKPDVIAVGG---NSRESRKL   79 (150)
T ss_dssp             ---EEEEE-TT--TTS-EEEEEE-TTS-EEEE-EEE-S-TT-SS-SHHHHHHHHHHHHHH--SEEEE-----SSTHHHHH
T ss_pred             CCEEEEEEcCCCCCCCCEEEEEECCCCcEEEE-EEEcCCccchHHHHHHHHHHHHHHHHcCCeEEEEcC---CChhHHHH
Confidence            4689999999765    556888889986552 333 2111      234 899999999999999941   33333333


Q ss_pred             HHHHhhcc---c----CCCCCEEEecCC
Q 033269          102 IEQLDGNE---I----YRGLPFCYFQKT  122 (123)
Q Consensus       102 ~~~L~~~~---~----~~~lpV~l~DEr  122 (123)
                      .+.+++..   .    ...++|+++||.
T Consensus        80 ~~~v~~~v~~~~~~~~~~~i~V~~v~~~  107 (150)
T PF14639_consen   80 YDDVRDIVEELDEDEQMPPIPVVIVDDE  107 (150)
T ss_dssp             HHHHHHHHHHTTB-TTS-B--EEE---T
T ss_pred             HHHHHHHHHHhhhcccCCCceEEEECcH
Confidence            22222111   0    016899999984

>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]

Probab=96.51  E-value=0.0025  Score=48.42  Aligned_cols=59  Identities=14%  Similarity=0.237  Sum_probs=44.6

Q ss_pred             EEEecCCCeEEEEEeeCCCceeec--ceeeeCcc-c-------c-c-chHHHHhhcCcCeEEEeccCC--ChH
Q 033269           38 LGLDVGNKYIGVSLFKRHGNEVEP--LTKFDRAK-A-------D-Q-ELPQLIEKHKVLGMVVNMPKE--HHE   96 (123)
Q Consensus        38 LglD~G~kriGlAvsD~~~~~a~P--l~~i~~~~-~-------~-~-~L~~li~~~~i~~iVVGlP~~--dGt   96 (123)
                      ||||||..+||.++-+..+.-..+  .++|..++ .       . . .|.+++++|+++.+.|=..+-  |-+
T Consensus         1 lGIDPGl~~~G~gvI~~~~~~l~~v~~G~I~t~~~~~l~~RL~~l~~~l~~vl~~~~P~~~AIE~~F~~kN~~   73 (160)
T COG0817           1 LGIDPGLRRTGYGVIEVEGRQLSYLASGVIRTSSDAPLAERLKQLYDGLSEVLDEYQPDEVAIEQVFVNKNAD   73 (160)
T ss_pred             CCcCCCccccceEEEEccCCeEEEEeeeEEecCCCccHHHHHHHHHHHHHHHHHHhCCCeeehhHHHHhcChH
Confidence            699999999999999988864333  24565332 1       1 2 888999999999999998776  544

>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=95.27  E-value=0.093  Score=41.87  Aligned_cols=86  Identities=19%  Similarity=0.371  Sum_probs=58.1

Q ss_pred             CCCceEEEEecCCCeEEEEEeeCCCceeecceeeeCc--cc--c----c--chHHHHhhc----CcCeEEEeccCC-C-h
Q 033269           32 NAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KA--D----Q--ELPQLIEKH----KVLGMVVNMPKE-H-H   95 (123)
Q Consensus        32 ~~~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~--~~--~----~--~L~~li~~~----~i~~iVVGlP~~-d-G   95 (123)
                      +.++.++|||+|..++=+|+.|..+.+..- ..++..  ..  .    +  .+++++..+    .+.+|.++.|-. + |
T Consensus         3 ~~~~~~lgidIggt~i~~~l~d~~g~~l~~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iGIgi~~pg~~~~~   81 (314)
T COG1940           3 PEAMTVLGIDIGGTKIKVALVDLDGEILLR-ERIPTPTPDPEEAILEAILALVAELLKQAQGRVAIIGIGIPGPGDVDNG   81 (314)
T ss_pred             ccCcEEEEEEecCCEEEEEEECCCCcEEEE-EEEecCCCCchhHHHHHHHHHHHHHHHhcCCcCceEEEEeccceeccCC
Confidence            347889999999999999999998875331 222211  11  1    2  555555543    466777777776 3 4


Q ss_pred             H-----------HHHHHHHHHhhcccCCCCCEEEecC
Q 033269           96 E-----------HVSSFIEQLDGNEIYRGLPFCYFQK  121 (123)
Q Consensus        96 t-----------~v~~f~~~L~~~~~~~~lpV~l~DE  121 (123)
                      +           .--.|++.|++++   ++||...+.
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~L~~~~---~~Pv~veND  115 (314)
T COG1940          82 TVIVPAPNLGWWNGVDLAEELEARL---GLPVFVEND  115 (314)
T ss_pred             cEEeecCCCCccccccHHHHHHHHH---CCCEEEecH
Confidence            2           2245899999999   899988654

>PRK05082 N-acetylmannosamine kinase; Provisional

Probab=94.36  E-value=0.2  Score=39.62  Aligned_cols=83  Identities=14%  Similarity=0.191  Sum_probs=55.6

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc----ccc--chHHHHhhc--CcCeEEEeccCC-C-hH--------
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK----ADQ--ELPQLIEKH--KVLGMVVNMPKE-H-HE--------   96 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~----~~~--~L~~li~~~--~i~~iVVGlP~~-d-Gt--------   96 (123)
                      |.++|+|+|..++-+++.|..+.+.. ...++.+.    ..+  .+.+++++.  ++.+|.||.|=. | +.        
T Consensus         1 ~~~lgvdig~~~i~~~l~dl~g~i~~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~igi~~pG~vd~~~~~~~~~~~   79 (291)
T PRK05082          1 MTTLAIDIGGTKIAAALVGEDGQIRQ-RRQIPTPASQTPEALRQALSALVSPLQAQADRVAVASTGIINDGILTALNPHN   79 (291)
T ss_pred             CcEEEEEECCCEEEEEEEcCCCcEEE-EEEecCCCCCCHHHHHHHHHHHHHHhhhcCcEEEEeCcccccCCeeEEecCCC
Confidence            35899999999999999998887553 23333221    223  566666654  577899998744 2 21        


Q ss_pred             ----HHHHHHHHHhhcccCCCCCEEEecC
Q 033269           97 ----HVSSFIEQLDGNEIYRGLPFCYFQK  121 (123)
Q Consensus        97 ----~v~~f~~~L~~~~~~~~lpV~l~DE  121 (123)
                          .-..+.+.|++++   ++||.+.++
T Consensus        80 ~~~w~~~~l~~~l~~~~---~~pv~v~ND  105 (291)
T PRK05082         80 LGGLLHFPLVQTLEQLT---DLPTIALND  105 (291)
T ss_pred             CccccCCChHHHHHHHh---CCCEEEECc
Confidence                1224567788888   899887664

>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function

Probab=94.24  E-value=0.39  Score=35.75  Aligned_cols=67  Identities=15%  Similarity=0.233  Sum_probs=47.4

Q ss_pred             CCceEEEEecCCCeEEEEEeeCCCceeecceeeeCccccc-chHHHHhhcCcCeEEEeccCCChH----HHHHHHHHHhh
Q 033269           33 AGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ-ELPQLIEKHKVLGMVVNMPKEHHE----HVSSFIEQLDG  107 (123)
Q Consensus        33 ~~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~~~~-~L~~li~~~~i~~iVVGlP~~dGt----~v~~f~~~L~~  107 (123)
                      +..-|+|+|||+ .+|+|+-|.+|.+.   .+..+.+-+. ++-++|.+++--.||-=    |-+    .|++++..+..
T Consensus        30 ~~~lIVGiDPG~-ttgiAildL~G~~l---~l~S~R~~~~~evi~~I~~~G~PviVAt----DV~p~P~~V~Kia~~f~A  101 (138)
T PF04312_consen   30 RRYLIVGIDPGT-TTGIAILDLDGELL---DLKSSRNMSRSEVIEWISEYGKPVIVAT----DVSPPPETVKKIARSFNA  101 (138)
T ss_pred             CCCEEEEECCCc-eeEEEEEecCCcEE---EEEeecCCCHHHHHHHHHHcCCEEEEEe----cCCCCcHHHHHHHHHhCC
Confidence            456789999998 68999999999853   3554334455 88899988876555544    444    66666666653

>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length

Probab=94.14  E-value=0.17  Score=42.69  Aligned_cols=54  Identities=15%  Similarity=0.237  Sum_probs=41.1

Q ss_pred             EEecCCCeEEEEEeeCCCceeecceeeeCcc--ccc-chHHHHhhc-CcCeEEE----eccCC
Q 033269           39 GLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--ADQ-ELPQLIEKH-KVLGMVV----NMPKE   93 (123)
Q Consensus        39 glD~G~kriGlAvsD~~~~~a~Pl~~i~~~~--~~~-~L~~li~~~-~i~~iVV----GlP~~   93 (123)
                      |+|+||+-+-++..|..+.+.. ...+++..  ++- .+.+.++++ +++.|+.    |+|+.
T Consensus         1 GIDpGT~s~dv~~~dd~g~v~~-~~~ipt~~v~~~p~~iv~~l~~~~~~dlIa~psGyG~pl~   62 (343)
T PF07318_consen    1 GIDPGTKSFDVCGLDDDGKVIF-YFSIPTEEVAKNPSIIVEELEEFGDIDLIAGPSGYGLPLK   62 (343)
T ss_pred             CCCCCCCcEEEEEEccCCcEEE-EeeccHHHhhhCHHHHHHHHHhccCCCEEEeCCcCCcccc
Confidence            6899999999999998677655 45666433  333 677778887 9999986    66876

The function of this family is unknown.

>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition

Probab=93.93  E-value=0.14  Score=36.32  Aligned_cols=76  Identities=18%  Similarity=0.290  Sum_probs=51.5

Q ss_pred             EEEEecCCCeEEEEEeeCCCceeecceeeeCccccc-chHHHHhhcCcCeEEEeccCC-ChHHHHHHHHHHhhcccCCCC
Q 033269           37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ-ELPQLIEKHKVLGMVVNMPKE-HHEHVSSFIEQLDGNEIYRGL  114 (123)
Q Consensus        37 iLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~~~~-~L~~li~~~~i~~iVVGlP~~-dGt~v~~f~~~L~~~~~~~~l  114 (123)
                      ++|||+|....=+++.++.+.... ...+.++...+ .+.+++.++.  .++||+  . -|.....++..|...    ++
T Consensus         1 ~vGiDv~k~~~~v~v~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~--~~~v~~--E~tg~y~~~l~~~L~~~----g~   71 (144)
T PF01548_consen    1 FVGIDVSKDTHDVCVIDPNGEKLR-RFKFENDPAGLEKLLDWLASLG--PVLVVM--EATGGYWRPLADFLQDA----GI   71 (144)
T ss_pred             eEEEEcccCeEEEEEEcCCCcEEE-EEEEeccccchhHHhhhhcccc--cccccc--ccccccchhhhhheecc----cc
Confidence            589999999999999999995444 45666554667 8888888886  445552  2 222344666666653    56


Q ss_pred             CEEEecC
Q 033269          115 PFCYFQK  121 (123)
Q Consensus       115 pV~l~DE  121 (123)
                      +|.+++-
T Consensus        72 ~v~~vnp   78 (144)
T PF01548_consen   72 EVVVVNP   78 (144)
T ss_pred             ccccccc
Confidence            7766653

This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=93.88  E-value=0.17  Score=41.91  Aligned_cols=83  Identities=17%  Similarity=0.221  Sum_probs=55.2

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeC--ccccc--chHHHHhhcCcCe--EEEeccCCC-----hHHHHHHH
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDR--AKADQ--ELPQLIEKHKVLG--MVVNMPKEH-----HEHVSSFI  102 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~--~~~~~--~L~~li~~~~i~~--iVVGlP~~d-----Gt~v~~f~  102 (123)
                      .+.++|||+|...+-+|.+|..... .-+..+|.  +...+  .|++++.+++++.  +|+---+-|     -+-+...+
T Consensus         2 ~~kilGiDIGGAntk~a~~DG~~~~-~d~~YlPMWk~k~rL~~~Lkei~~k~~~~~vgvvMTaELaD~f~tk~eGVe~Ii   80 (330)
T COG1548           2 KMKILGIDIGGANTKIASSDGDNYK-IDHIYLPMWKKKDRLEETLKEIVHKDNVDYVGVVMTAELADAFKTKAEGVEDII   80 (330)
T ss_pred             CceEEEeeccCccchhhhccCCeee-eeEEEeccccchhHHHHHHHHHhccCCcceeEEEeeHHHHHHhhhHHhHHHHHH
Confidence            3789999999999999998855531 11222332  22334  8888888888774  444311111     11677788


Q ss_pred             HHHhhcccCCCCCEEEec
Q 033269          103 EQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus       103 ~~L~~~~~~~~lpV~l~D  120 (123)
                      +..++.|   +.||.++|
T Consensus        81 ~~v~~Af---~~pv~~v~   95 (330)
T COG1548          81 DTVEKAF---NCPVYVVD   95 (330)
T ss_pred             HHHHHhc---CCceEEEe
Confidence            8999999   89999887

>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=93.32  E-value=0.16  Score=39.82  Aligned_cols=82  Identities=17%  Similarity=0.224  Sum_probs=54.8

Q ss_pred             ceEEEEecCCCeEEEEEeeC--CCceeecceeeeCcc-ccc--chHHHHhhc-----CcCeEEEec-cCC-ChH-HHHHH
Q 033269           35 LGILGLDVGNKYIGVSLFKR--HGNEVEPLTKFDRAK-ADQ--ELPQLIEKH-----KVLGMVVNM-PKE-HHE-HVSSF  101 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~--~~~~a~Pl~~i~~~~-~~~--~L~~li~~~-----~i~~iVVGl-P~~-dGt-~v~~f  101 (123)
                      |.+|+||--++.|++|+.+.  ...++.-.....++. ..+  .+.+++.+.     +++.|+||. |=+ -|- ....|
T Consensus         1 m~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~~r~hse~l~~~i~~ll~~~~~~~~dld~iav~~GPGSFTGlRIG~~~   80 (220)
T COG1214           1 MKILAIDTSTSALSVALYLADDGKVLAEHTEKLKRNHAERLMPMIDELLKEAGLSLQDLDAIAVAKGPGSFTGLRIGVAF   80 (220)
T ss_pred             CcEEEEEcChhhhhhheeecCCCcEEEEEEEeccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEccCCCcccchhhHHHH
Confidence            67999999999999998876  444455333344322 223  888888777     577899993 222 222 56677


Q ss_pred             HHHHhhcccCCCCCEEEe
Q 033269          102 IEQLDGNEIYRGLPFCYF  119 (123)
Q Consensus       102 ~~~L~~~~~~~~lpV~l~  119 (123)
                      |+-|+-..   ++|++=+
T Consensus        81 AkgLA~~l---~iplvgv   95 (220)
T COG1214          81 AKGLALAL---NIPLVGV   95 (220)
T ss_pred             HHHHHHHc---CCCEEEe
Confidence            88887655   7777643

>PRK09557 fructokinase; Reviewed

Probab=93.19  E-value=0.31  Score=38.79  Aligned_cols=81  Identities=14%  Similarity=0.192  Sum_probs=52.2

Q ss_pred             EEEEecCCCeEEEEEeeCCCceeecceeeeCcc---cc-c-chHHHHhhc-----CcCeEEEeccCC----ChH------
Q 033269           37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---AD-Q-ELPQLIEKH-----KVLGMVVNMPKE----HHE------   96 (123)
Q Consensus        37 iLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~---~~-~-~L~~li~~~-----~i~~iVVGlP~~----dGt------   96 (123)
                      .+|+|+|..++-+|+.|..+.+.. ...++.+.   .. + .+.+++++.     .+.+|.||.|=.    +|.      
T Consensus         2 ~lgidig~t~~~~~l~d~~g~i~~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~gIgi~~pG~vd~~~g~i~~~~~   80 (301)
T PRK09557          2 RIGIDLGGTKIEVIALDDAGEELF-RKRLPTPRDDYQQTIEAIATLVDMAEQATGQRGTVGVGIPGSISPYTGLVKNANS   80 (301)
T ss_pred             EEEEEECCCcEEEEEECCCCCEEE-EEEecCCCCCHHHHHHHHHHHHHHHHhhcCCceEEEecCcccCcCCCCeEEecCC
Confidence            589999999999999998876543 23443221   12 2 455555443     356788888732    343      


Q ss_pred             ---HHHHHHHHHhhcccCCCCCEEEecC
Q 033269           97 ---HVSSFIEQLDGNEIYRGLPFCYFQK  121 (123)
Q Consensus        97 ---~v~~f~~~L~~~~~~~~lpV~l~DE  121 (123)
                         .-..+.+.|++++   ++||.+.+.
T Consensus        81 ~~~~~~~l~~~l~~~~---~~pv~~~ND  105 (301)
T PRK09557         81 TWLNGQPLDKDLSARL---NREVRLAND  105 (301)
T ss_pred             ccccCCCHHHHHHHHH---CCCEEEccc
Confidence               1234567788888   789887653

>PRK13310 N-acetyl-D-glucosamine kinase; Provisional

Probab=91.77  E-value=0.55  Score=37.29  Aligned_cols=81  Identities=11%  Similarity=0.141  Sum_probs=51.8

Q ss_pred             EEEEecCCCeEEEEEeeCCCceeecceeeeCcc---cc-c-chHHHHhhc----C-cCeEEEeccCC-C---hH------
Q 033269           37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---AD-Q-ELPQLIEKH----K-VLGMVVNMPKE-H---HE------   96 (123)
Q Consensus        37 iLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~---~~-~-~L~~li~~~----~-i~~iVVGlP~~-d---Gt------   96 (123)
                      ++|+|+|..++-+++.|..+.+..- ..++...   .. + .+.+++++.    + +.+|-||.|=. |   |.      
T Consensus         2 ~lgidig~t~i~~~l~d~~g~i~~~-~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~igia~pG~vd~~~g~~~~~~~   80 (303)
T PRK13310          2 YYGFDIGGTKIELGVFNEKLELQWE-ERVPTPRDSYDAFLDAVCELVAEADQRFGCKGSVGIGIPGMPETEDGTLYAANV   80 (303)
T ss_pred             eEEEEeCCCcEEEEEECCCCcEEEE-EEecCCCcCHHHHHHHHHHHHHHHHhhcCCcceEEEeCCCcccCCCCEEeccCc
Confidence            5999999999999999988765432 2333211   12 2 555555442    2 34688888754 3   32      


Q ss_pred             ---HHHHHHHHHhhcccCCCCCEEEecC
Q 033269           97 ---HVSSFIEQLDGNEIYRGLPFCYFQK  121 (123)
Q Consensus        97 ---~v~~f~~~L~~~~~~~~lpV~l~DE  121 (123)
                         .--.+.+.|++++   ++||.+.+.
T Consensus        81 ~~w~~~~l~~~l~~~~---~~pV~ieND  105 (303)
T PRK13310         81 PAASGKPLRADLSARL---GRDVRLDND  105 (303)
T ss_pred             ccccCCcHHHHHHHHH---CCCeEEecc
Confidence               1125677888888   899887653

>PF14239 RRXRR: RRXRR protein

Probab=91.66  E-value=0.26  Score=37.99  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             CCceEEEEecCCCeEEEEEeeCCC
Q 033269           33 AGLGILGLDVGNKYIGVSLFKRHG   56 (123)
Q Consensus        33 ~~~riLglD~G~kriGlAvsD~~~   56 (123)
                      ...-.+|||+|+|.+|+|+.+...
T Consensus        49 ~qpi~lgiDpGsk~tGiav~~~~~   72 (176)
T PF14239_consen   49 TQPIRLGIDPGSKTTGIAVVSEKK   72 (176)
T ss_pred             ccCEEEEECCCCCeEEEEEEeCCE
Confidence            345679999999999999998663

>PRK00292 glk glucokinase; Provisional

Probab=91.48  E-value=0.74  Score=37.00  Aligned_cols=84  Identities=14%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             CceEEEEecCCCeEEEEEeeC-CCceeecceeeeCcc-ccc--chHHHHhh---cCcCeEEEeccCC-C-hH------HH
Q 033269           34 GLGILGLDVGNKYIGVSLFKR-HGNEVEPLTKFDRAK-ADQ--ELPQLIEK---HKVLGMVVNMPKE-H-HE------HV   98 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~-~~~~a~Pl~~i~~~~-~~~--~L~~li~~---~~i~~iVVGlP~~-d-Gt------~v   98 (123)
                      |..+||+|+|..++=+++.|. .+.+.. ...++.+. ..+  .+.+++++   .++.++.||.|=. | ++      .-
T Consensus         1 ~~~~lgiDIGgT~i~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gigIg~pG~vd~~~i~~~n~~w   79 (316)
T PRK00292          1 MKPALVGDIGGTNARFALCDWANGEIEQ-IKTYATADYPSLEDAIRAYLADEHGVQVRSACFAIAGPVDGDEVRMTNHHW   79 (316)
T ss_pred             CceEEEEEcCccceEEEEEecCCCceee-eEEEecCCCCCHHHHHHHHHHhccCCCCceEEEEEeCcccCCEEEecCCCc
Confidence            456899999999999999984 444222 23444222 223  56666664   2578999999754 3 22      00


Q ss_pred             HHHHHHHhhcccCCCCC-EEEecC
Q 033269           99 SSFIEQLDGNEIYRGLP-FCYFQK  121 (123)
Q Consensus        99 ~~f~~~L~~~~~~~~lp-V~l~DE  121 (123)
                      ....+.|++++   ++| |.+.+.
T Consensus        80 ~~~~~~l~~~~---~~p~v~l~ND  100 (316)
T PRK00292         80 AFSIAAMKQEL---GLDHLLLIND  100 (316)
T ss_pred             ccCHHHHHHHh---CCCeEEEEec
Confidence            11257788888   886 887653

>TIGR03725 bact_YeaZ universal bacterial protein YeaZ

Probab=90.77  E-value=0.7  Score=35.22  Aligned_cols=80  Identities=16%  Similarity=0.174  Sum_probs=50.8

Q ss_pred             EEEEecCCCeEEEEEeeCCCceeecceeeeCcc-cc-c-chHHHHhhc-----CcCeEEEec-cCC-ChH-HHHHHHHHH
Q 033269           37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK-AD-Q-ELPQLIEKH-----KVLGMVVNM-PKE-HHE-HVSSFIEQL  105 (123)
Q Consensus        37 iLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~-~~-~-~L~~li~~~-----~i~~iVVGl-P~~-dGt-~v~~f~~~L  105 (123)
                      +|+||--++.+++|+.+....++.-.....+.. .. + .+.+++++.     +++.|++|. |=+ -|- ....+++-|
T Consensus         1 iLaidTs~~~~sval~~~~~~~~~~~~~~~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~GPGSfTGlRig~~~akgl   80 (202)
T TIGR03725         1 ILAIDTSTEALSVALLDDGEILAERSEEAGRNHSEILLPMIEELLAEAGLSLQDLDAIAVGVGPGSFTGLRIGLATAKGL   80 (202)
T ss_pred             CEEEECCCcceEEEEEECCEEEEEEeehhhHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHH
Confidence            589999999999999985444443211112211 22 3 788888765     578888882 211 221 667788888


Q ss_pred             hhcccCCCCCEEEe
Q 033269          106 DGNEIYRGLPFCYF  119 (123)
Q Consensus       106 ~~~~~~~~lpV~l~  119 (123)
                      +...   ++|++-+
T Consensus        81 a~~~---~~p~~~v   91 (202)
T TIGR03725        81 ALAL---GIPLVGV   91 (202)
T ss_pred             HHHh---CCCEEec
Confidence            8665   7777644

This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=90.39  E-value=0.65  Score=41.97  Aligned_cols=67  Identities=16%  Similarity=0.244  Sum_probs=48.2

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCccccc-chHHHHhhcCcCeEEEeccCCChHHHHHHHHHHhhcc
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ-ELPQLIEKHKVLGMVVNMPKEHHEHVSSFIEQLDGNE  109 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~~~~-~L~~li~~~~i~~iVVGlP~~dGt~v~~f~~~L~~~~  109 (123)
                      .-|+|||||. .+|+|+-|.+|.+..   +..+.+-+. ++.++|.+++--.+|-=    |-+-.=.|+++|+..|
T Consensus       244 ~lIVGIDPGi-TtgiAvldldGevl~---~~S~r~~~~~eVve~I~~lG~PvvVAt----DVtp~P~~V~KiAasf  311 (652)
T COG2433         244 SLIVGIDPGI-TTGIAVLDLDGEVLD---LESRRGIDRSEVVEFISELGKPVVVAT----DVTPAPETVKKIAASF  311 (652)
T ss_pred             ceEEEeCCCc-eeeEEEEecCCcEEe---eeccccCCHHHHHHHHHHcCCceEEEc----cCCCChHHHHHHHHHc
Confidence            3689999998 689999999998543   444444556 99999999977766665    6664444555555544

>PRK09698 D-allose kinase; Provisional

Probab=89.79  E-value=1.5  Score=34.75  Aligned_cols=82  Identities=17%  Similarity=0.354  Sum_probs=54.2

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc-------ccc--chHHHHhhc--CcCeEEEeccCC-C---hH---
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK-------ADQ--ELPQLIEKH--KVLGMVVNMPKE-H---HE---   96 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~-------~~~--~L~~li~~~--~i~~iVVGlP~~-d---Gt---   96 (123)
                      ..++|+|+|..++-+++.|..+.+.. ...++...       ..+  .+.++++++  ++.+|-||.|=. |   |.   
T Consensus         4 ~~~lgidig~t~i~~~l~d~~g~i~~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~i~gigia~pG~vd~~~g~i~~   82 (302)
T PRK09698          4 NVVLGIDMGGTHIRFCLVDAEGEILH-CEKKRTAEVIAPDLVSGLGEMIDEYLRRFNARCHGIVMGFPALVSKDRRTVIS   82 (302)
T ss_pred             cEEEEEEcCCcEEEEEEEcCCCCEEE-EEEeCCccccchHHHHHHHHHHHHHHHHcCCCeeEEEEeCCcceeCCCCEEEe
Confidence            46899999999999999998886543 23333211       112  455566554  578899999843 2   21   


Q ss_pred             ---------HHHHHHHHHhhcccCCCCCEEEec
Q 033269           97 ---------HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 ---------~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                               .-..+.+.|++++   ++||.+.+
T Consensus        83 ~~~~~~~~~~~~~l~~~l~~~~---~~pv~v~N  112 (302)
T PRK09698         83 TPNLPLTALDLYDLADKLENTL---NCPVFFSR  112 (302)
T ss_pred             cCCCCccccccCCHHHHHHHHh---CCCEEEcc
Confidence                     1124567888888   89988765

>PRK12408 glucokinase; Provisional

Probab=89.66  E-value=0.76  Score=37.72  Aligned_cols=89  Identities=16%  Similarity=0.134  Sum_probs=55.7

Q ss_pred             ccCCCCceEEEEecCCCeEEEEEeeCCCcee-----ecceeeeCcc-ccc--chHHHHhh-cCcCeEEEeccC-C--ChH
Q 033269           29 VGENAGLGILGLDVGNKYIGVSLFKRHGNEV-----EPLTKFDRAK-ADQ--ELPQLIEK-HKVLGMVVNMPK-E--HHE   96 (123)
Q Consensus        29 ~~~~~~~riLglD~G~kriGlAvsD~~~~~a-----~Pl~~i~~~~-~~~--~L~~li~~-~~i~~iVVGlP~-~--dGt   96 (123)
                      ++-++|-++|++|+|.-+|=+|+.|..+.++     .-...++... ..+  .+.+++++ .++.++.||.|= .  +|+
T Consensus        10 ~~~~~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~igIg~pG~~~~~g~   89 (336)
T PRK12408         10 VAVPRPESFVAADVGGTHVRVALVCASPDAAKPVELLDYRTYRCADYPSLAAILADFLAECAPVRRGVIASAGYALDDGR   89 (336)
T ss_pred             ccCcccccEEEEEcChhhhheeEEeccCCccccccccceeEecCCCccCHHHHHHHHHhcCCCcCEEEEEecCCceECCE
Confidence            4556677799999999999999998765521     1122333111 222  44455442 347889999875 2  554


Q ss_pred             ------HHHHHHHHHhhcccCCCCC-EEEec
Q 033269           97 ------HVSSFIEQLDGNEIYRGLP-FCYFQ  120 (123)
Q Consensus        97 ------~v~~f~~~L~~~~~~~~lp-V~l~D  120 (123)
                            .-..+.+.|++++   ++| |.+.+
T Consensus        90 v~~~nl~w~~~~~~l~~~~---~~~~V~l~N  117 (336)
T PRK12408         90 VITANLPWTLSPEQIRAQL---GLQAVHLVN  117 (336)
T ss_pred             EEecCCCCccCHHHHHHHc---CCCeEEEee
Confidence                  0123567888888   785 88765

>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase)

Probab=89.19  E-value=1.1  Score=35.63  Aligned_cols=80  Identities=16%  Similarity=0.352  Sum_probs=51.0

Q ss_pred             EEEecCCCeEEEEEeeCCCceeecceeeeCcc--cc-c-ch----HHHHhhc-----CcCeEEEeccCC-C---hH----
Q 033269           38 LGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--AD-Q-EL----PQLIEKH-----KVLGMVVNMPKE-H---HE----   96 (123)
Q Consensus        38 LglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~--~~-~-~L----~~li~~~-----~i~~iVVGlP~~-d---Gt----   96 (123)
                      +|+|+|..++-+++.|..+.+..- ..++...  .. + .+    .+++++.     ++.+|-||.|=. |   |.    
T Consensus         1 lgidig~t~~~~~l~d~~g~i~~~-~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~   79 (318)
T TIGR00744         1 IGVDIGGTTIKLGVVDEEGNILSK-WKVPTDTTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFA   79 (318)
T ss_pred             CEEEeCCCEEEEEEECCCCCEEEE-EEeCCCCCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEec
Confidence            589999999999999988765431 3333211  11 2 33    3444433     577889998743 2   32    


Q ss_pred             -----HHHHHHHHHhhcccCCCCCEEEecC
Q 033269           97 -----HVSSFIEQLDGNEIYRGLPFCYFQK  121 (123)
Q Consensus        97 -----~v~~f~~~L~~~~~~~~lpV~l~DE  121 (123)
                           .-..+.+.|++++   ++||.+.+.
T Consensus        80 ~~~~w~~~~l~~~l~~~~---~~pv~v~ND  106 (318)
T TIGR00744        80 VNLDWKQEPLKEKVEARV---GLPVVVEND  106 (318)
T ss_pred             CCCCCCCCCHHHHHHHHH---CCCEEEech
Confidence                 1224677888888   899887653

This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.

>PRK13321 pantothenate kinase; Reviewed

Probab=87.15  E-value=4.2  Score=32.08  Aligned_cols=52  Identities=21%  Similarity=0.360  Sum_probs=35.6

Q ss_pred             EEEEecCCCeEEEEEeeCCCceeecceeeeCcc----cc-c-chHHHHhhc-----CcCeEEEec
Q 033269           37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK----AD-Q-ELPQLIEKH-----KVLGMVVNM   90 (123)
Q Consensus        37 iLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~----~~-~-~L~~li~~~-----~i~~iVVGl   90 (123)
                      +|+||+|..++=+|+.|.. .+... ..++...    .. + .+.++++++     ++++++++-
T Consensus         2 iL~IDIGnT~ik~gl~~~~-~i~~~-~~~~T~~~~~~~~~~~~l~~l~~~~~~~~~~i~~i~vss   64 (256)
T PRK13321          2 LLLIDVGNTNIKLGVFDGD-RLLRS-FRLPTDKSRTSDELGILLLSLFRHAGLDPEDIRAVVISS   64 (256)
T ss_pred             EEEEEECCCeEEEEEEECC-EEEEE-EEEecCCCCCHHHHHHHHHHHHHHcCCChhhCCeEEEEe
Confidence            6999999999999999954 33321 2333111    12 3 788888776     488999994

>PRK13311 N-acetyl-D-glucosamine kinase; Provisional

Probab=86.54  E-value=2.8  Score=32.64  Aligned_cols=81  Identities=12%  Similarity=0.123  Sum_probs=52.2

Q ss_pred             EEEEecCCCeEEEEEeeCCCceeecceeeeCcc---cc-c-chHHHHhhcC-----cCeEEEeccCC---C-hH------
Q 033269           37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---AD-Q-ELPQLIEKHK-----VLGMVVNMPKE---H-HE------   96 (123)
Q Consensus        37 iLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~---~~-~-~L~~li~~~~-----i~~iVVGlP~~---d-Gt------   96 (123)
                      ++|+|+|..++-+++.|..+.+.. ...++.+.   .. + .+.+++++..     +.+|-||.|=-   + |.      
T Consensus         2 ~lgidiggt~i~~~l~d~~g~i~~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~gIgv~~pG~vd~~~g~i~~~~~   80 (256)
T PRK13311          2 YYGFDMGGTKIELGVFDENLQRIW-HKRVPTPREDYPQLLQILRDLTEEADTYCGVQGSVGIGIPGLPNADDGTVFTANV   80 (256)
T ss_pred             EEEEEECCCcEEEEEECCCCCEEE-EEEecCCCcCHHHHHHHHHHHHHHHHhhcCCCceEEEEecCcEECCCCEEEccCC
Confidence            699999999999999998876443 23343221   12 3 5666665432     34687887742   2 32      


Q ss_pred             ---HHHHHHHHHhhcccCCCCCEEEecC
Q 033269           97 ---HVSSFIEQLDGNEIYRGLPFCYFQK  121 (123)
Q Consensus        97 ---~v~~f~~~L~~~~~~~~lpV~l~DE  121 (123)
                         .-..+++.|++++   ++||.+-+.
T Consensus        81 ~~w~~~~l~~~l~~~~---~~pV~leND  105 (256)
T PRK13311         81 PSAMGQPLQADLSRLI---QREVRIDND  105 (256)
T ss_pred             CcccCCChHHHHHHHH---CCCEEEEch
Confidence               2236678888888   789887654

>PRK13320 pantothenate kinase; Reviewed

Probab=85.73  E-value=5.8  Score=31.43  Aligned_cols=71  Identities=15%  Similarity=0.067  Sum_probs=43.7

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeCccccc-chHHHHhhc-CcCeEEEeccCCChHHHHHHHHHHhhcc
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ-ELPQLIEKH-KVLGMVVNMPKEHHEHVSSFIEQLDGNE  109 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~~~~-~L~~li~~~-~i~~iVVGlP~~dGt~v~~f~~~L~~~~  109 (123)
                      |+.+|.||.|..++=.|+.+....+..  ..++ .+... .+.++++.+ +++.+++.-...  .....|.+.+++.+
T Consensus         1 ~~M~L~iDiGNT~ik~~~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~~~i~~i~vsSVvp--~~~~~~~~~~~~~~   73 (244)
T PRK13320          1 VSMNLVIDIGNTTTKLAVFEGDELLEV--FVVS-TEGVEESLEKLLAKYPAIRDAIVSSVVP--LAEEAFSALLKLLF   73 (244)
T ss_pred             CceEEEEEeCCCcEEEEEEECCEEEEE--EEEc-cHHHHHHHHHHHHHCCCCCEEEEEeccc--chHHHHHHHHHHhC
Confidence            467999999999999999985433322  2222 11223 677777766 588888884333  22344555554433

>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []

Probab=85.38  E-value=1.1  Score=32.55  Aligned_cols=78  Identities=17%  Similarity=0.300  Sum_probs=52.6

Q ss_pred             EEecCCCeEEEEEeeCCCceeecceeeeCc-c-cc-c-----chHHHHhhcCcCeEEEeccCC-C-h--H---------H
Q 033269           39 GLDVGNKYIGVSLFKRHGNEVEPLTKFDRA-K-AD-Q-----ELPQLIEKHKVLGMVVNMPKE-H-H--E---------H   97 (123)
Q Consensus        39 glD~G~kriGlAvsD~~~~~a~Pl~~i~~~-~-~~-~-----~L~~li~~~~i~~iVVGlP~~-d-G--t---------~   97 (123)
                      |||.|..++=+++.|..+.+.. ...++.+ + .. +     .+.++..+++..+|-|+.|=. + +  .         .
T Consensus         1 gidig~~~i~~~l~d~~g~ii~-~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~gIgi~~pG~v~~~~g~i~~~~~~~~~   79 (179)
T PF00480_consen    1 GIDIGGTSIRIALVDLDGEIIY-SESIPTPTSPEELLDALAELIERLLADYGRSGIGISVPGIVDSEKGRIISSPNPGWE   79 (179)
T ss_dssp             EEEEESSEEEEEEEETTSCEEE-EEEEEHHSSHHHHHHHHHHHHHHHHHHHTCEEEEEEESSEEETTTTEEEECSSGTGT
T ss_pred             CEEECCCEEEEEEECCCCCEEE-EEEEECCCCHHHHHHHHHHHHHHHHhhcccccEEEeccccCcCCCCeEEecCCCCcc
Confidence            7999999999999999987655 3445431 1 11 2     444555555544888888765 2 2  1         3


Q ss_pred             HHHHHHHHhhcccCCCCCEEEec
Q 033269           98 VSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        98 v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                      -..+.+.|++++   ++||.+.+
T Consensus        80 ~~~l~~~l~~~~---~~pv~i~N   99 (179)
T PF00480_consen   80 NIPLKEELEERF---GVPVIIEN   99 (179)
T ss_dssp             TCEHHHHHHHHH---TSEEEEEE
T ss_pred             cCCHHHHhhccc---ceEEEEec
Confidence            355778888888   78998765

This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....

>PRK13318 pantothenate kinase; Reviewed

Probab=84.85  E-value=4.8  Score=31.69  Aligned_cols=52  Identities=23%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             EEEEecCCCeEEEEEeeCCCceeecceeeeCcc----ccc--chHHHHhhcC-----cCeEEEec
Q 033269           37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK----ADQ--ELPQLIEKHK-----VLGMVVNM   90 (123)
Q Consensus        37 iLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~----~~~--~L~~li~~~~-----i~~iVVGl   90 (123)
                      +|+||+|..++=+|+.| .+.+.. ...++...    .++  .+.++++.++     ++++.+|.
T Consensus         2 iL~IDIGnT~iK~al~d-~g~i~~-~~~~~t~~~~~~~~~~~~l~~l~~~~~~~~~~i~~I~iss   64 (258)
T PRK13318          2 LLAIDVGNTNTVFGLYE-GGKLVA-HWRISTDSRRTADEYGVWLKQLLGLSGLDPEDITGIIISS   64 (258)
T ss_pred             EEEEEECCCcEEEEEEE-CCEEEE-EEEEeCCCCCCHHHHHHHHHHHHHHcCCCcccCceEEEEE
Confidence            79999999999999999 444332 12333111    223  6777777654     78999996

>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type

Probab=82.87  E-value=5  Score=32.78  Aligned_cols=74  Identities=16%  Similarity=0.324  Sum_probs=47.6

Q ss_pred             EEEEecCCCeEEEEEeeCCCceeecceeeeCcccccchHHHHhhcC-----cCeEEEeccCCChHHHHHHHHHHhhcccC
Q 033269           37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIEKHK-----VLGMVVNMPKEHHEHVSSFIEQLDGNEIY  111 (123)
Q Consensus        37 iLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~~~~~L~~li~~~~-----i~~iVVGlP~~dGt~v~~f~~~L~~~~~~  111 (123)
                      .+|||.|...+=+++.|..+.+..  ..+++.+.+ ++.+++++..     +..+.+     -|..+.+|++.+...+  
T Consensus         2 ~iGiDiGgT~~Kiv~~~~~~~~~f--~~~~~~~~~-~~~~~l~~~~~~~~~~~~i~~-----TGgGa~k~~~~~~~~~--   71 (279)
T TIGR00555         2 RIGIDIGGTLIKVVYEEPKGRRKF--KTFETTNID-KFIEWLKNQIHRHSRITTLCA-----TGGGAFKFAELIYESA--   71 (279)
T ss_pred             eEEEEeCcceEEEEEEcCCCcEEE--EEeecccHH-HHHHHHHHHHHhhcCceEEEE-----ECCcHHHHHHHhcccc--
Confidence            589999999999999987777654  566644311 3333333221     122222     2446888888888776  


Q ss_pred             CCCCEEEecC
Q 033269          112 RGLPFCYFQK  121 (123)
Q Consensus       112 ~~lpV~l~DE  121 (123)
                       ++++...||
T Consensus        72 -~v~~~k~dE   80 (279)
T TIGR00555        72 -GIQLHKFDE   80 (279)
T ss_pred             -CCcccchhH
Confidence             677777777

This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).

>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

Probab=82.55  E-value=2.6  Score=37.49  Aligned_cols=81  Identities=15%  Similarity=0.147  Sum_probs=53.3

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc-ccc--chHHHHhhc---CcCeEEEeccCC-ChH--------HH
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK-ADQ--ELPQLIEKH---KVLGMVVNMPKE-HHE--------HV   98 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~-~~~--~L~~li~~~---~i~~iVVGlP~~-dGt--------~v   98 (123)
                      ...+||+|+|.-++=+|+.|..+.+.. ...++... ..+  .+.+++++.   .+.++.||.|=. |+.        ..
T Consensus        17 ~~~~L~iDIGGT~ir~al~~~~g~i~~-~~~~~t~~~~~~~~~i~~~l~~~~~~~~~~igig~pGpVd~~~~~~~nl~w~   95 (638)
T PRK14101         17 DGPRLLADVGGTNARFALETGPGEITQ-IRVYPGADYPTLTDAIRKYLKDVKIGRVNHAAIAIANPVDGDQVRMTNHDWS   95 (638)
T ss_pred             CCCEEEEEcCchhheeeeecCCCcccc-eeEEecCCCCCHHHHHHHHHHhcCCCCcceEEEEEecCccCCeeeecCCCcE
Confidence            456999999999999999987776543 34555322 223  666666554   378999999876 553        00


Q ss_pred             HHHHHHHhhcccCCCCC-EEEe
Q 033269           99 SSFIEQLDGNEIYRGLP-FCYF  119 (123)
Q Consensus        99 ~~f~~~L~~~~~~~~lp-V~l~  119 (123)
                      .. .+.|++++   ++| |.+.
T Consensus        96 ~~-~~~l~~~~---g~~~v~l~  113 (638)
T PRK14101         96 FS-IEATRRAL---GFDTLLVV  113 (638)
T ss_pred             ec-HHHHHHHc---CCCeEEEE
Confidence            12 36787777   786 4454

>PRK09604 UGMP family protein; Validated

Probab=81.39  E-value=6.1  Score=32.51  Aligned_cols=83  Identities=13%  Similarity=0.114  Sum_probs=53.9

Q ss_pred             ceEEEEecCCCeEEEEEeeCC-Cceeec-ce----------eeeCcc-----ccc--chHHHHhhc-----CcCeEEEec
Q 033269           35 LGILGLDVGNKYIGVSLFKRH-GNEVEP-LT----------KFDRAK-----ADQ--ELPQLIEKH-----KVLGMVVNM   90 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~-~~~a~P-l~----------~i~~~~-----~~~--~L~~li~~~-----~i~~iVVGl   90 (123)
                      |++||||--...+++|+.|.. ..++.- ..          ++|...     +.+  .+.+++++.     +++.|+++.
T Consensus         1 m~iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~   80 (332)
T PRK09604          1 MLILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVTA   80 (332)
T ss_pred             CeEEEEEccccceEEEEEECCCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence            679999999999999999866 333220 11          111110     122  466666654     479999985


Q ss_pred             -cCC-ChH-HHHHHHHHHhhcccCCCCCEEEec
Q 033269           91 -PKE-HHE-HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        91 -P~~-dGt-~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                       |=. .|- ....+++.|+..+   ++|++.++
T Consensus        81 GPG~~tglrvg~~~Ak~La~~~---~ipl~~v~  110 (332)
T PRK09604         81 GPGLVGALLVGVSFAKALALAL---NKPLIGVN  110 (332)
T ss_pred             CCCcHHhHHHHHHHHHHHHHHh---CCCEEeec
Confidence             433 332 6677888998877   78888775

>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products

Probab=81.22  E-value=6.5  Score=29.24  Aligned_cols=52  Identities=23%  Similarity=0.374  Sum_probs=34.1

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc----ccc---chHHHHhhcCcCeEEEec
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK----ADQ---ELPQLIEKHKVLGMVVNM   90 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~----~~~---~L~~li~~~~i~~iVVGl   90 (123)
                      |-|+|||+|.+..|..+-+..+..   +..+.-+.    .++   .+..+++ ++++.++|=-
T Consensus         1 mii~sIDiGikNlA~~iie~~~~~---i~~~~i~~~~~~~~~~~~~~~dl~~-~~~d~VlIEr   59 (143)
T PF04848_consen    1 MIILSIDIGIKNLAYCIIEFEGNK---IRVIDISKVDWSRDWEYRILKDLLK-YEADTVLIER   59 (143)
T ss_pred             CeEEEEecCCCceeEEEEEcCCCe---EEEEEeccCCcccchHHHHHHHHhh-ccCCEEEEec
Confidence            568999999999999999976643   22222111    232   3344444 8888888863

; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination

>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome

Probab=80.38  E-value=9.3  Score=26.08  Aligned_cols=48  Identities=15%  Similarity=0.261  Sum_probs=36.7

Q ss_pred             EEEEec--CCCeEEEEEeeCCCceeecceeeeCccccc-chHHHHhhcCcCeEEEe
Q 033269           37 ILGLDV--GNKYIGVSLFKRHGNEVEPLTKFDRAKADQ-ELPQLIEKHKVLGMVVN   89 (123)
Q Consensus        37 iLglD~--G~kriGlAvsD~~~~~a~Pl~~i~~~~~~~-~L~~li~~~~i~~iVVG   89 (123)
                      ++||-.  ....+|+|..|..+.... +..+.    +. +|...+..++|..||+.
T Consensus         3 l~aI~~~~~~~~~gla~~D~sTGe~~-~~~~~----d~~~L~~~L~~~~P~EIi~~   53 (137)
T PF05188_consen    3 LAAIYEKNDEDSYGLAYIDLSTGEFY-VTEFE----DYSELKSELARLSPREIIIP   53 (137)
T ss_dssp             EEEEEEETCSSEEEEEEEETTTTEEE-EEEEE----CHHHHHHHHHHH-ESEEEEE
T ss_pred             EEEEEEecCCCEEEEEEEECCCCEEE-EEEeC----CHHHHHHHHHhcCCeEEEEc
Confidence            566666  777799999998776554 33443    17 99999999999999998

It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the connector domain (domain 2) found in proteins of the MutS family. The structure of the MutS connector domain consists of a parallel beta-sheet surrounded by four alpha helices, which is similar to the structure of the Holliday junction resolvase ruvC.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 2WTU_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	123
1iv0_A	98	Hypothetical protein; rnaseh-like, YQGF, structura	1e-07
1vhx_A	150	Putative holliday junction resolvase; structural g	5e-07
1nu0_A	138	Hypothetical protein YQGF; structural genomics, st	2e-06

>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 Length = 98

 Score = 45.2 bits (108), Expect = 1e-07
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 14/93 (15%)

Query: 37  ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD---QELPQLIEKHKVLGMVVNMPK- 92
           +  LDVG   IG+++ +             R   +   + L   + +  +  +VV +P  
Sbjct: 3   VGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLR 62

Query: 93  ----EHH--EHVSSFIEQLDGNEIYRGLPFCYF 119
               E      V   +E L      RG+    +
Sbjct: 63  TDLKESAQAGKVLPLVEALRA----RGVEVELW 91

>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8 Length = 150

 Score = 44.5 bits (106), Expect = 5e-07
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 15/95 (15%)

Query: 37  ILGLDVGNKYIGVSLFKRHGNEVEPLT-----KFDRAKADQELPQLIEKHKVLGMVVNMP 91
           ILGLD+G K +GV+L    G   + +      + +       L +LI+ + +  +V+  P
Sbjct: 5   ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFP 64

Query: 92  K-----EHH--EHVSSFIEQLDGNEIYRGLPFCYF 119
           K          E   +F + L+       +P   +
Sbjct: 65  KNMNGTVGPRGEASQTFAKVLETT---YNVPVVLW 96

>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A Length = 138

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 13/92 (14%)

Query: 37  ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD---QELPQLIEKHKVLGMVVNMPK- 92
           ++  D G K IGV++ +R      PL              + +L+++ +   ++V +P  
Sbjct: 5   LMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLN 64

Query: 93  ----EHH--EHVSSFIEQLDGNEIYRGLPFCY 118
               E         F  ++ G     G+    
Sbjct: 65  MDGTEQPLTARARKFANRIHGR---FGVEVKL 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
1iv0_A	98	Hypothetical protein; rnaseh-like, YQGF, structura	99.96
1nu0_A	138	Hypothetical protein YQGF; structural genomics, st	99.95
1vhx_A	150	Putative holliday junction resolvase; structural g	99.91
4ep4_A	166	Crossover junction endodeoxyribonuclease RUVC; res	98.65
1hjr_A	158	Holliday junction resolvase (RUVC); site-specific	98.18
3bzc_A	785	TEX; helix-turn-helix, helix-hairpin-helix, S1 dom	98.01
3psf_A	1030	Transcription elongation factor SPT6; nucleus; 2.5	97.53
3psi_A	1219	Transcription elongation factor SPT6; nucleus; 3.3	97.42
3epq_A	302	Putative fructokinase; SCRK, ADP binding, PSI2, MC	96.03
2ch5_A	347	NAGK protein; transferase, N-acetylglucosamine, gl	95.8
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	95.79
2e2o_A	299	Hexokinase; acetate and sugar kinases, HSP70, acti	95.73
3vov_A	302	Glucokinase, hexokinase; ROK, sugar kinase, transf	95.29
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	95.06
2gup_A	292	ROK family protein; sugar kinase, streptococcus pn	94.52
3r6m_A	213	YEAZ, resuscitation promoting factor; actin/HSP70	94.23
4htl_A	297	Beta-glucoside kinase; structural genomics, sugar	94.08
2ap1_A	327	Putative regulator protein; zinc binding protein,	93.99
1saz_A	381	Probable butyrate kinase 2; askha (acetate and sug	93.97
4db3_A	327	Glcnac kinase, N-acetyl-D-glucosamine kinase; stru	93.94
3htv_A	310	D-allose kinase, allokinase; NP_418508.1, structur	93.9
3mcp_A	366	Glucokinase; structural genomics, joint center for	92.84
3djc_A	266	Type III pantothenate kinase; structural genomics,	92.83
2gel_A	231	Putative GRAM negative resuscitation promoting FA;	92.2
2aa4_A	289	Mannac kinase, putative N-acetylmannosamine kinase	91.82
1sz2_A	332	Glucokinase, glucose kinase; ATP-dependent, glucos	91.43
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	91.42
2q2r_A	373	Glucokinase 1, putative; ATPase hexose kinase fami	90.77
2a6a_A	218	Hypothetical protein TM0874; glycoprotein endopept	90.13
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	90.07
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	89.86
1woq_A	267	Inorganic polyphosphate/ATP-glucomannokinase; tran	89.71
1z05_A	429	Transcriptional regulator, ROK family; structural	89.38
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	88.42
3eno_A	334	Putative O-sialoglycoprotein endopeptidase; hydrol	87.67
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	87.09
2yhw_A	343	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N	86.93
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	85.53
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	83.85
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	83.7
3lm2_A	226	Putative kinase; structural genomics, joint center	83.56
2h3g_X	268	Biosynthetic protein; pantothenate kinase, anthrax	83.03
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	82.32
1t6c_A	315	Exopolyphosphatase; alpha/beta protein, actin-like	81.98
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	81.61

>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8

Probab=99.96  E-value=3.2e-29  Score=173.69  Aligned_cols=84  Identities=19%  Similarity=0.288  Sum_probs=78.2

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc--ccc-chHHHHhhcCcCeEEEeccCC-ChH------HHHHHHHH
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--ADQ-ELPQLIEKHKVLGMVVNMPKE-HHE------HVSSFIEQ  104 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~--~~~-~L~~li~~~~i~~iVVGlP~~-dGt------~v~~f~~~  104 (123)
                      ||+||||||+||||+|+||+.+.+|+|+.++.+.+  .++ .|.+++++|+++.+|||+|++ ||+      .+++|+++
T Consensus         1 mriLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~   80 (98)
T 1iv0_A            1 MRVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEA   80 (98)
T ss_dssp             CCEEEEEESSSEEEEEEECSCCSSCCCEEEEECCCHHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHH
T ss_pred             CcEEEEEeCCCEEEEEEEeCCCCeeeeeEEEEccCcHHHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHH
Confidence            57999999999999999999999999999997544  457 999999999999999999999 998      99999999


Q ss_pred             HhhcccCCCCCEEEecCC
Q 033269          105 LDGNEIYRGLPFCYFQKT  122 (123)
Q Consensus       105 L~~~~~~~~lpV~l~DEr  122 (123)
                      |+++    ++||++||||
T Consensus        81 L~~~----~lpV~~~DER   94 (98)
T 1iv0_A           81 LRAR----GVEVELWDER   94 (98)
T ss_dssp             HHHT----TCEEEEECCS
T ss_pred             HhcC----CCCEEEECCC
Confidence            9985    5899999998

>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A

Probab=99.95  E-value=1.1e-28  Score=180.15  Aligned_cols=86  Identities=19%  Similarity=0.353  Sum_probs=80.4

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc--ccc-chHHHHhhcCcCeEEEeccCC-ChH------HHHHHHH
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--ADQ-ELPQLIEKHKVLGMVVNMPKE-HHE------HVSSFIE  103 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~--~~~-~L~~li~~~~i~~iVVGlP~~-dGt------~v~~f~~  103 (123)
                      |+++||||||+||||||+||+.+.+|+|++++++.+  .++ .|.+++++|+++.||||+|++ ||+      .+++|++
T Consensus         2 ~~~iLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~   81 (138)
T 1nu0_A            2 SGTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFAN   81 (138)
T ss_dssp             CCEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCEEEEEEEcCCCCEEeeEEEEEcCCcchHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHH
Confidence            468999999999999999999999999999998643  457 999999999999999999999 998      8899999


Q ss_pred             HHhhcccCCCCCEEEecCC
Q 033269          104 QLDGNEIYRGLPFCYFQKT  122 (123)
Q Consensus       104 ~L~~~~~~~~lpV~l~DEr  122 (123)
                      +|++++   ++||++||||
T Consensus        82 ~L~~~~---~lpV~~~DER   97 (138)
T 1nu0_A           82 RIHGRF---GVEVKLHDER   97 (138)
T ss_dssp             HHHHHH---CCCEEEEEEE
T ss_pred             HHHHHh---CCCEEEEcCC
Confidence            999998   8999999998

>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8

Probab=99.91  E-value=2.1e-24  Score=158.96  Aligned_cols=85  Identities=25%  Similarity=0.437  Sum_probs=78.7

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc----ccc-chHHHHhhcCcCeEEEeccCC-ChH------HHHHHH
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK----ADQ-ELPQLIEKHKVLGMVVNMPKE-HHE------HVSSFI  102 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~----~~~-~L~~li~~~~i~~iVVGlP~~-dGt------~v~~f~  102 (123)
                      ||+||||||++|||+|++|+.+.+++|+++|.+.+    ..+ .|.+++++|+++.+|||+|++ ||+      .++.|+
T Consensus         3 mriLGiDpG~~riGvAv~d~~g~~a~p~~~I~~~~~r~~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~   82 (150)
T 1vhx_A            3 LRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFA   82 (150)
T ss_dssp             EEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHH
T ss_pred             CEEEEEEccCCEEEEEEEECCCCEEeeEEEEEcCCcchHHHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHH
Confidence            68999999999999999999999999999998532    346 999999999999999999999 998      779999


Q ss_pred             HHHhhcccCCCCCEEEecCC
Q 033269          103 EQLDGNEIYRGLPFCYFQKT  122 (123)
Q Consensus       103 ~~L~~~~~~~~lpV~l~DEr  122 (123)
                      ..|.+++   ++||++||||
T Consensus        83 ~~L~~~~---~lpV~~vDEr   99 (150)
T 1vhx_A           83 KVLETTY---NVPVVLWDER   99 (150)
T ss_dssp             HHHHHHH---CSCEEEECCS
T ss_pred             HHHHHhh---CCCEEEecCC
Confidence            9999888   8999999998

>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A

Probab=98.65  E-value=1.9e-07  Score=69.64  Aligned_cols=83  Identities=11%  Similarity=0.171  Sum_probs=60.6

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCc---eeec--ceeeeCccc--------cc--chHHHHhhcCcCeEEEeccCC--ChH-
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGN---EVEP--LTKFDRAKA--------DQ--ELPQLIEKHKVLGMVVNMPKE--HHE-   96 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~---~a~P--l~~i~~~~~--------~~--~L~~li~~~~i~~iVVGlP~~--dGt-   96 (123)
                      |||||||||+.++|.++.|..+.   -.+.  .++|..+..        .+  .|.+++++|+++.++|--|+-  |.+ 
T Consensus         1 MrILGIDPGl~~tG~gvi~~~g~~~~~~~~v~~G~I~t~~~~~~~~RL~~I~~~l~~~i~~~~Pd~vaiE~~F~~~n~~s   80 (166)
T 4ep4_A            1 MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVEEQFFYRQNEL   80 (166)
T ss_dssp             CEEEEEECCSSEEEEEEEEECSSSSSCEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHCCSEEEEECCCCSSCSHH
T ss_pred             CEEEEEccccCceEEEEEEecCCccceEEEEEeCeEECCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeehhhccChHH
Confidence            69999999999999999988775   3222  256763321        13  899999999999999999994  655 


Q ss_pred             -----HHHHHHHHHhhcccCCCCCEEEec
Q 033269           97 -----HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 -----~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                           .++-.+.....+.   ++||..+-
T Consensus        81 al~lgqarGv~~la~~~~---glpv~eyt  106 (166)
T 4ep4_A           81 AYKVGWALGAVLVAAFEA---GVPVYAYG  106 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TCCEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHc---CCCEEEEC
Confidence                 4455554444444   88987653

>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6

Probab=98.18  E-value=9.5e-06  Score=59.77  Aligned_cols=82  Identities=13%  Similarity=0.174  Sum_probs=55.7

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceee--cceeeeCccc-------cc--chHHHHhhcCcCeEEEeccCC--ChH-----
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVE--PLTKFDRAKA-------DQ--ELPQLIEKHKVLGMVVNMPKE--HHE-----   96 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~--Pl~~i~~~~~-------~~--~L~~li~~~~i~~iVVGlP~~--dGt-----   96 (123)
                      |||||||||..++|.|+.+..+.-..  -.+++..++.       .+  .|.+++++|+++.++|=-++-  |.+     
T Consensus         1 m~ILGIDPGl~~tG~gvi~~~g~~~~~v~~G~i~t~~~~~~~Rl~~i~~~l~~~i~~~~Pd~vaiE~vf~~~n~~s~~~l   80 (158)
T 1hjr_A            1 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKL   80 (158)
T ss_dssp             CEEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHH
T ss_pred             CEEEEEccCCCCeeEEEEEecCCeEEEEEeeEEECCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccChHHHHHH
Confidence            68999999999999999987664221  1235543221       12  789999999999999998886  433     


Q ss_pred             -HHHHHHHHHhhcccCCCCCEEEe
Q 033269           97 -HVSSFIEQLDGNEIYRGLPFCYF  119 (123)
Q Consensus        97 -~v~~f~~~L~~~~~~~~lpV~l~  119 (123)
                       .++-.+.......   ++||..+
T Consensus        81 gqarGv~~~a~~~~---~ipv~ey  101 (158)
T 1hjr_A           81 GQARGVAIVAAVNQ---ELPVFEY  101 (158)
T ss_dssp             HHHHHHHHHHHHTT---TCCEEEE
T ss_pred             HHHHHHHHHHHHHc---CCCEEEE
Confidence             3333333333333   7888765

>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A

Probab=98.01  E-value=2.5e-05  Score=69.97  Aligned_cols=99  Identities=18%  Similarity=0.200  Sum_probs=67.9

Q ss_pred             hhhhhhhhhccCCC-CceEEEEecC-CCeEEEEEeeCCCceeecceeeeCcc-----ccc-chHHHHhhcCcCeEEEecc
Q 033269           20 FCGRVEKQCVGENA-GLGILGLDVG-NKYIGVSLFKRHGNEVEPLTKFDRAK-----ADQ-ELPQLIEKHKVLGMVVNMP   91 (123)
Q Consensus        20 ~~~~~~~~~~~~~~-~~riLglD~G-~kriGlAvsD~~~~~a~Pl~~i~~~~-----~~~-~L~~li~~~~i~~iVVGlP   91 (123)
                      |..+....+-..|- ..++||+|+| +.-|.+|+.|..|.+..-..+.+...     ... .|.+++.+|+++.|+||  
T Consensus       313 f~~nL~~lLl~aP~~~~~vlg~dpg~r~g~k~a~vd~~G~~l~~~~iy~~~~~~~~~~~~~~l~~li~~~~~~~IaIG--  390 (785)
T 3bzc_A          313 FARNLHDLLLAAPAGPRATLGLDPGLRTGVKVAVVDATGKLLDTATVYPHAPKNQWDQTLAVLAALCAKHQVELIAIG--  390 (785)
T ss_dssp             HHHHHHHHHTSCCCCSCCEEEEECCSSSCEEEEEECTTSCEEEEEEECCSGGGCCHHHHHHHHHHHHHHHTCCEEEEE--
T ss_pred             HHHHHHHHHcCCCCCCCeEEEECCCCcCceEEEEECCCCCEEEEEEEecCCchhHHHHHHHHHHHHHHHcCCCEEEEC--
Confidence            44444444333332 4589999999 67799999999998665323333221     235 89999999999999999  


Q ss_pred             CCChH---HHHHHHHHHhhcccCCCCCEEEecCC
Q 033269           92 KEHHE---HVSSFIEQLDGNEIYRGLPFCYFQKT  122 (123)
Q Consensus        92 ~~dGt---~v~~f~~~L~~~~~~~~lpV~l~DEr  122 (123)
                        |||   ....|+..|-+..+...+++++++|.
T Consensus       391 --ngtasret~~~v~~l~~~~~~~~i~~v~v~e~  422 (785)
T 3bzc_A          391 --NGTASRETDKLAGELIKKYPGMKLTKIMVSEA  422 (785)
T ss_dssp             --SSTTHHHHHHHHHHHHHHCGGGCCEEEEECCH
T ss_pred             --CCccCHHHHHHHHHHHHhcccCCCCEEEEcCC
Confidence              997   55566666654442115889999883

>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.00041  Score=63.76  Aligned_cols=83  Identities=19%  Similarity=0.256  Sum_probs=59.3

Q ss_pred             ceEEEEecCCCe-----EEEEEeeCCCceeecceee-eC----cc--ccc-chHHHHhhcCcCeEEEeccCCChH-HHHH
Q 033269           35 LGILGLDVGNKY-----IGVSLFKRHGNEVEPLTKF-DR----AK--ADQ-ELPQLIEKHKVLGMVVNMPKEHHE-HVSS  100 (123)
Q Consensus        35 ~riLglD~G~kr-----iGlAvsD~~~~~a~Pl~~i-~~----~~--~~~-~L~~li~~~~i~~iVVGlP~~dGt-~v~~  100 (123)
                      .+|||||+|...     |-+|+.|..|.+.. ..++ +.    .+  ... .|.+++.+|+++.|+||    ||+ .+..
T Consensus       519 ~~VlaldpG~~~~~~~g~k~a~vd~~G~~l~-~~~i~~~~~~~~~~~~~~~~l~~li~~~~~~~IaIG----n~s~et~~  593 (1030)
T 3psf_A          519 PKILSLTCGQGRFGADAIIAVYVNRKGDFIR-DYKIVDNPFDKTNPEKFEDTLDNIIQSCQPNAIGIN----GPNPKTQK  593 (1030)
T ss_dssp             CCEEEEECTTCCTTTSCEEEEEECTTSCEEE-EEEECSCTTCSSCCHHHHHHHHHHHHHHCCSEEEEC----CSSTHHHH
T ss_pred             CeEEEecCCCCCCCCCCeEEEEECCCCCEEE-EEEEcCCCCChhhHHHHHHHHHHHHHHcCCcEEEEC----CCCHHHHH
Confidence            499999999763     88899999998665 3444 21    11  123 89999999999999999    887 5666


Q ss_pred             HHHHHhhcc--------cCCCCCEEEecCC
Q 033269          101 FIEQLDGNE--------IYRGLPFCYFQKT  122 (123)
Q Consensus       101 f~~~L~~~~--------~~~~lpV~l~DEr  122 (123)
                      |...+.+..        +..+++|++++|.
T Consensus       594 l~~~l~~~i~~~~~~~~~~~~i~~~iV~e~  623 (1030)
T 3psf_A          594 FYKRLQEVLHKKQIVDSRGHTIPIIYVEDE  623 (1030)
T ss_dssp             HHHHHHHHHHHTTCBCTTSCBCCEEECCCT
T ss_pred             HHHHHHHHHHhhccccccCCCccEEEecch
Confidence            655553311        0015899999985

>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.00065  Score=63.36  Aligned_cols=83  Identities=19%  Similarity=0.256  Sum_probs=59.4

Q ss_pred             ceEEEEecCCCe-----EEEEEeeCCCceeecceee-eC----cc--ccc-chHHHHhhcCcCeEEEeccCCChH-HHHH
Q 033269           35 LGILGLDVGNKY-----IGVSLFKRHGNEVEPLTKF-DR----AK--ADQ-ELPQLIEKHKVLGMVVNMPKEHHE-HVSS  100 (123)
Q Consensus        35 ~riLglD~G~kr-----iGlAvsD~~~~~a~Pl~~i-~~----~~--~~~-~L~~li~~~~i~~iVVGlP~~dGt-~v~~  100 (123)
                      .+|||||+|...     |-+|+.|..|.+.. ..++ +.    .+  ... .|.+++.+|+|+.|+||    ||+ .+..
T Consensus       516 ~~VlaldpG~r~~g~~g~k~a~vD~~G~vl~-~~~i~~~~~~~~~~~~a~~~l~~li~~~~~~vIaIG----n~sret~~  590 (1219)
T 3psi_A          516 PKILSLTCGQGRFGADAIIAVYVNRKGDFIR-DYKIVDNPFDKTNPEKFEDTLDNIIQSCQPNAIGIN----GPNPKTQK  590 (1219)
T ss_dssp             CCEEEEECTTCCTTTTCEEEEEECTTSCEEE-EEEECSCTTCSSCSHHHHHHHHHHHHHHCCSEEEEC----CSSTHHHH
T ss_pred             CeEEEecCCCCCCCCCceEEEEECCCCCEEE-EEEEcCCCCChhhHHHHHHHHHHHHHHcCCcEEEEC----CCCHHHHH
Confidence            499999999863     77899999998665 3444 21    11  123 89999999999999999    887 5666


Q ss_pred             HHHHHhhcc--------cCCCCCEEEecCC
Q 033269          101 FIEQLDGNE--------IYRGLPFCYFQKT  122 (123)
Q Consensus       101 f~~~L~~~~--------~~~~lpV~l~DEr  122 (123)
                      |...|.+..        +..+++|++++|.
T Consensus       591 l~~~l~~~i~~~~~~~~~~~~i~vviV~e~  620 (1219)
T 3psi_A          591 FYKRLQEVLHKKQIVDSRGHTIPIIYVEDE  620 (1219)
T ss_dssp             HHHHHHHHHHHTTCBCSSSCBCCEEECCCT
T ss_pred             HHHHHHHHHHhhccccccCCCccEEEECch
Confidence            655553311        0015899999985

>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*

Probab=95.80  E-value=0.066  Score=41.60  Aligned_cols=81  Identities=11%  Similarity=0.062  Sum_probs=55.7

Q ss_pred             eEEEEecCCCeEEEEEeeCCCceeecceee-eCc----c-c-cc-chH----HHHhh-----c-CcCeEEEeccCC-ChH
Q 033269           36 GILGLDVGNKYIGVSLFKRHGNEVEPLTKF-DRA----K-A-DQ-ELP----QLIEK-----H-KVLGMVVNMPKE-HHE   96 (123)
Q Consensus        36 riLglD~G~kriGlAvsD~~~~~a~Pl~~i-~~~----~-~-~~-~L~----~li~~-----~-~i~~iVVGlP~~-dGt   96 (123)
                      .++|+|.|..++=+++.|..+.+..- ... ..+    + . .+ .+.    +++++     . ++.+|-||.|=. |..
T Consensus         7 ~~lgiDiGgt~~~~~l~d~~g~i~~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~gigi~~pG~vd~~   85 (347)
T 2ch5_A            7 IYGGVEGGGTRSEVLLVSEDGKILAE-ADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQED   85 (347)
T ss_dssp             EEEEEEECTTCEEEEEEETTSCEEEE-EEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEETTTTCHH
T ss_pred             EEEEEEcCccceEEEEEeCCCCEEEE-EeCCCCCcccCCHHHHHHHHHHHHHHHHHhcCCCcccceeEEEEeccCCCchH
Confidence            68999999999999999988865432 222 111    1 1 12 333    44433     2 688999999887 765


Q ss_pred             HHHHHHHHHhhcccCCC---CCEEEec
Q 033269           97 HVSSFIEQLDGNEIYRG---LPFCYFQ  120 (123)
Q Consensus        97 ~v~~f~~~L~~~~~~~~---lpV~l~D  120 (123)
                      .-..+.+.|++++   +   +||.+.+
T Consensus        86 ~~~~l~~~l~~~~---~~~~~pv~v~N  109 (347)
T 2ch5_A           86 AGRILIEELRDRF---PYLSESYLITT  109 (347)
T ss_dssp             HHHHHHHHHHHHC---TTSBSCEEEEE
T ss_pred             HHHHHHHHHHHhc---CCCCceEEEEC
Confidence            5567788888887   5   7888765

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*

Probab=95.79  E-value=0.0099  Score=46.47  Aligned_cols=83  Identities=14%  Similarity=0.196  Sum_probs=55.7

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeC-cc-cc-c-----chHHHHhhcCcCeEEEeccCC-C---hH-----
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDR-AK-AD-Q-----ELPQLIEKHKVLGMVVNMPKE-H---HE-----   96 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~-~~-~~-~-----~L~~li~~~~i~~iVVGlP~~-d---Gt-----   96 (123)
                      |+.++|+|+|..++=+++.|..+.+.. ...++. .+ .. +     .+.++.+++++.+|.||.|=. |   |.     
T Consensus         1 M~~~lgiDiGgt~i~~~l~d~~G~i~~-~~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~gigi~~pG~vd~~~g~v~~~~   79 (321)
T 3vgl_A            1 MGLTIGVDIGGTKIAAGVVDEEGRILS-TFKVATPPTAEGIVDAICAAVAGASEGHDVEAVGIGAAGYVDDKRATVLFAP   79 (321)
T ss_dssp             -CEEEEEEECSSEEEEEEECTTCCBCC-CEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEEEESSEECTTSSCEEECS
T ss_pred             CcEEEEEEECCCEEEEEEECCCCCEEE-EEEeeCCCCHHHHHHHHHHHHHHHHhhcCceEEEEeccccEeCCCCEEEeCC
Confidence            567999999999999999998886543 233332 11 11 2     344444556899999999854 3   32     


Q ss_pred             ----HHHHHHHHHhhcccCCCCCEEEec
Q 033269           97 ----HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 ----~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                          .-..+.+.|++++   ++||.+.+
T Consensus        80 ~l~w~~~~l~~~l~~~~---~~pv~v~N  104 (321)
T 3vgl_A           80 NIDWRHEPLKDKVEQRV---GLPVVVEN  104 (321)
T ss_dssp             SSCCEEECHHHHHHHHH---CSCEEEEE
T ss_pred             CCCCcCCCHHHHHhhhh---CCCEEEEe
Confidence                1134577888888   89988765

>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*

Probab=95.73  E-value=0.054  Score=41.41  Aligned_cols=82  Identities=9%  Similarity=0.009  Sum_probs=54.9

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeCc-----c-cc-c-chHHHHhhc---CcCeEEEeccCC-ChHHHHHH
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA-----K-AD-Q-ELPQLIEKH---KVLGMVVNMPKE-HHEHVSSF  101 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~-----~-~~-~-~L~~li~~~---~i~~iVVGlP~~-dGt~v~~f  101 (123)
                      ||.++|+|.|..++=+++.|..+.+.. ....+..     + .. + .+.+.+++.   .+.++.||.|=. +.+....+
T Consensus         1 mM~~lgiDiGgt~~~~~l~d~~g~i~~-~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~igi~~~G~~~~~~~~~l   79 (299)
T 2e2o_A            1 MMIIVGVDAGGTKTKAVAYDCEGNFIG-EGSSGPGNYHNVGLTRAIENIKEAVKIAAKGEADVVGMGVAGLDSKFDWENF   79 (299)
T ss_dssp             CCCEEEEEECSSCEEEEEECTTSCEEE-EEEESCCCHHHHCHHHHHHHHHHHHHHHHTSCCSEEEEEETTCCSHHHHHHH
T ss_pred             CeEEEEEEeCCCcEEEEEEcCCCCEEE-EEeCCCCCcccCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCchhHHHHH
Confidence            457899999999999999998886543 1233221     1 11 2 444444432   277899998765 33344677


Q ss_pred             HHHHhhcccCCCCCEEEec
Q 033269          102 IEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus       102 ~~~L~~~~~~~~lpV~l~D  120 (123)
                      .+.|++ +   ++||.+++
T Consensus        80 ~~~l~~-~---~~pv~v~N   94 (299)
T 2e2o_A           80 TPLASL-I---APKVIIQH   94 (299)
T ss_dssp             HHHHTT-S---SSEEEEEE
T ss_pred             HHHHHh-C---CCCEEEeC
Confidence            888888 7   78988765

>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}

Probab=95.29  E-value=0.022  Score=44.27  Aligned_cols=81  Identities=16%  Similarity=0.195  Sum_probs=53.9

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc---cc-c-chHHHHh------hcCcCeEEEeccCC-C---hH--H
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---AD-Q-ELPQLIE------KHKVLGMVVNMPKE-H---HE--H   97 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~---~~-~-~L~~li~------~~~i~~iVVGlP~~-d---Gt--~   97 (123)
                      |.++|+|+|..++-+++.|..+.+.  ...++.+.   .. + .+.++++      ..++.++.||.|=. |   |.  .
T Consensus         1 M~~lgiDiGgt~i~~~l~d~~~~l~--~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~gigi~~pG~vd~~~g~v~~   78 (302)
T 3vov_A            1 MKVVGLDLGGTKIAAGVFDGKRLLS--KVVVPTPKEGGERVAEALAEAAERAEREAGVRGEAIGLGTPGPLDFRRGVIRF   78 (302)
T ss_dssp             CCEEEEEECSSEEEEEEECSSSBSC--CEEEECCSSCHHHHHHHHHHHHHHHHHHHTCCCSSEEEEESSCEETTTTEEC-
T ss_pred             CEEEEEEEcCCEEEEEEEeCCCcEE--EEEEcCCCCChHHHHHHHHHHHHHHHhhccCCceEEEEEecccEeCCCCEEEc
Confidence            4789999999999999999875542  23444222   12 2 4444443      25799999999865 3   32  1


Q ss_pred             H--------HHHHHHHhhcccCCCCCEEEec
Q 033269           98 V--------SSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        98 v--------~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                      .        ..+.+.|++++   ++||.+.+
T Consensus        79 ~~~~~~w~~~~l~~~l~~~~---~~pv~v~N  106 (302)
T 3vov_A           79 APNIPGVQDFPIRRILEEAT---GRPVFLEN  106 (302)
T ss_dssp             --CCTTCTTCCHHHHHHHHH---SSCEEEEE
T ss_pred             CCCCCCcCCCChHHHHHHhh---CCCEEEEe
Confidence            1        23467888888   89998765

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}

Probab=95.06  E-value=0.029  Score=43.16  Aligned_cols=85  Identities=19%  Similarity=0.305  Sum_probs=55.6

Q ss_pred             CCC-ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc----cc-c-c----hHHHHhhc-----CcCeEEEeccCC-C
Q 033269           32 NAG-LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK----AD-Q-E----LPQLIEKH-----KVLGMVVNMPKE-H   94 (123)
Q Consensus        32 ~~~-~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~----~~-~-~----L~~li~~~-----~i~~iVVGlP~~-d   94 (123)
                      |+| ..++|+|+|..++=+++.|..+.+.. ...++...    .. + .    +.+++++.     ++.+|.||.|=. |
T Consensus         2 ~~m~~~~lgiDiggt~~~~~l~d~~g~il~-~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~igi~~pG~vd   80 (326)
T 2qm1_A            2 NAMDKKIIGIDLGGTTIKFAILTTDGVVQQ-KWSIETNILEDGKHIVPSIIESIRHRIDLYNMKKEDFVGIGMGTPGSVD   80 (326)
T ss_dssp             CGGGCEEEEEEECSSEEEEEEEETTCCEEE-EEEEECCCTTTTTTHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESSEEE
T ss_pred             CCcccEEEEEEECCCEEEEEEECCCCCEEE-EEEEcCCCCCCHHHHHHHHHHHHHHHHHHcCCCccceeEEEEeccccee
Confidence            455 47899999999999999998886543 22333211    11 2 3    34444443     467888988864 3


Q ss_pred             ---hHH---------HH-HHHHHHhhcccCCCCCEEEec
Q 033269           95 ---HEH---------VS-SFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        95 ---Gt~---------v~-~f~~~L~~~~~~~~lpV~l~D  120 (123)
                         |..         -. .+.+.|++++   ++||.+.+
T Consensus        81 ~~~g~v~~~~~l~w~~~~~l~~~l~~~~---~~pv~v~N  116 (326)
T 2qm1_A           81 IEKGTVVGAYNLNWTTVQPVKEQIESAL---GIPFALDN  116 (326)
T ss_dssp             TTTTEEECBGGGTBCSCBCHHHHHHHHH---CSCEEEEE
T ss_pred             CCCCEEEecCCCCccCCchHHHHHHHHh---CCCEEEec
Confidence               430         02 6688898888   78988765

>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10

Probab=94.52  E-value=0.056  Score=41.18  Aligned_cols=80  Identities=20%  Similarity=0.265  Sum_probs=56.2

Q ss_pred             eEEEEecCCCeEEEEEeeCCCceeecceeeeC-cc-cc-c-chHHHHhhcCcCeEEEeccCC-C---hH-----H-----
Q 033269           36 GILGLDVGNKYIGVSLFKRHGNEVEPLTKFDR-AK-AD-Q-ELPQLIEKHKVLGMVVNMPKE-H---HE-----H-----   97 (123)
Q Consensus        36 riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~-~~-~~-~-~L~~li~~~~i~~iVVGlP~~-d---Gt-----~-----   97 (123)
                      .++|+|.|..++=+++.|..+.+.. ...++. .. .. + .+.+++++.++.++.||.|=. |   |.     .     
T Consensus         5 ~~lgidiggt~i~~~l~d~~g~il~-~~~~~~~~~~~~~~~~i~~~i~~~~i~gigi~~pG~vd~~~g~v~~~~~~~~~~   83 (292)
T 2gup_A            5 TIATIDIGGTGIKFASLTPDGKILD-KTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYIH   83 (292)
T ss_dssp             CEEEEEEETTEEEEEEECTTCCEEE-EEEECCCSSHHHHHHHHHHHHTTSCCSEEEEEESSEECTTTCBEESCCSSGGGS
T ss_pred             EEEEEEECCCEEEEEEECCCCCEEE-EEEEeCCCCHHHHHHHHHHHHHhCCCcEEEEEecCcccCCCCEEEecCCCCccc
Confidence            6899999999999999998886543 123332 11 22 3 777777777899999999854 3   42     1     


Q ss_pred             HHHHHHHHhhcccCCCCCEEEec
Q 033269           98 VSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        98 v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                      -..+.+.| +++   ++||.+.+
T Consensus        84 ~~~l~~~l-~~~---~~pv~v~N  102 (292)
T 2gup_A           84 GFSWYEAL-SSY---QLPVHLEN  102 (292)
T ss_dssp             SSBHHHHT-GGG---CCCEEEEE
T ss_pred             CCCHHHHH-HHc---CCCEEEec
Confidence            12467888 888   89988754

>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}

Probab=94.23  E-value=0.16  Score=38.50  Aligned_cols=81  Identities=12%  Similarity=0.103  Sum_probs=54.1

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc-ccc--chHHHHhhc-----CcCeEEEec-cCC-ChH-HHHHHHH
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK-ADQ--ELPQLIEKH-----KVLGMVVNM-PKE-HHE-HVSSFIE  103 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~-~~~--~L~~li~~~-----~i~~iVVGl-P~~-dGt-~v~~f~~  103 (123)
                      |++||||--+..|++|+.+....++. ...-.+.. +.+  .+.+++++.     .++.|+++. |=+ -|- ....+++
T Consensus         2 M~iLaIdTS~~~~svAl~~~~~~~~~-~~~~~~~Hs~~L~p~i~~~L~~a~~~~~dld~Iav~~GPGsfTglRig~~~Ak   80 (213)
T 3r6m_A            2 AKILAIDTATENCSVALLVNDQVISR-SEVAPRDHTKKVLPMVDEVLKEAGLTLQDLDALAFGRGPGSFTGVRIGIGIAQ   80 (213)
T ss_dssp             CCEEEEECSSSEEEEEEESSSCEEEE-EEECCSCCHHHHHHHHHHHHHTTTCCTTTCSEEEEEEESSCHHHHHHHHHHHH
T ss_pred             CEEEEEEccCcceEEEEEECCEEEEE-EEechHHHHHHHHHHHHHHHHHcCCCHHHccEEEEecCCCchhhHHHHHHHHH
Confidence            78999999999999999986544444 33222222 223  777777764     589999983 222 121 5667888


Q ss_pred             HHhhcccCCCCCEEEe
Q 033269          104 QLDGNEIYRGLPFCYF  119 (123)
Q Consensus       104 ~L~~~~~~~~lpV~l~  119 (123)
                      -|....   ++|++-+
T Consensus        81 gLa~~~---~iPl~gV   93 (213)
T 3r6m_A           81 GLAFGA---ELPMIGV   93 (213)
T ss_dssp             HHHHHT---TCCEEEE
T ss_pred             HHHHHh---CCCEEEE
Confidence            888766   7887654

>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}

Probab=94.08  E-value=0.13  Score=39.67  Aligned_cols=82  Identities=18%  Similarity=0.304  Sum_probs=56.3

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc---cc-c-chHHHHhh-cCcCeEEEeccCC-C---hH-----H--
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---AD-Q-ELPQLIEK-HKVLGMVVNMPKE-H---HE-----H--   97 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~---~~-~-~L~~li~~-~~i~~iVVGlP~~-d---Gt-----~--   97 (123)
                      |.++|+|+|..++=+++.|..+.+.. ...++...   .. + .+.+.+.+ .++.+|-||.|=. |   |.     .  
T Consensus         4 m~~lgiDiGgt~i~~~l~d~~G~il~-~~~~~~~~~~~~~~~~~i~~~~~~~~~i~gigi~~pG~vd~~~g~v~~~~~l~   82 (297)
T 4htl_A            4 MKIAAFDIGGTALKMGVVLPHGEIIL-TKSAEISGSDGDQILAEMKVFLAENTDVTGIAVSAPGYVNPKTGLITMGGAIR   82 (297)
T ss_dssp             CCEEEEEECSSEEEEEEECTTSCEEE-EEEEECSTTCHHHHHHHHHHHHHTCTTCCEEEEEESSEECTTTCEEEECTTCG
T ss_pred             cEEEEEEeCCCeEEEEEECCCCCEEE-EEEecCCCCCHHHHHHHHHHHHhhcCCeeEEEEecCcceeCCCCEEEeCCCCC
Confidence            57999999999999999999887554 23333221   12 3 56665554 4688999999854 3   33     1  


Q ss_pred             ---HHHHHHHHhhcccCCCCCEEEec
Q 033269           98 ---VSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        98 ---v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                         -..+.+.|++++   ++||.+.+
T Consensus        83 ~w~~~~l~~~l~~~~---~~pV~v~N  105 (297)
T 4htl_A           83 RFDNFNLKEWLEAET---GLPVAIEN  105 (297)
T ss_dssp             GGTTEEHHHHHHHHH---CSCEEEEE
T ss_pred             CccCCCHHHHHHHHH---CcCEEEec
Confidence               123577888888   89988764

>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10

Probab=93.99  E-value=0.091  Score=40.71  Aligned_cols=86  Identities=10%  Similarity=0.087  Sum_probs=54.0

Q ss_pred             CCCCceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc---cc-c-chHHHHhh----c-CcCeEEEeccCC-C---hH
Q 033269           31 ENAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---AD-Q-ELPQLIEK----H-KVLGMVVNMPKE-H---HE   96 (123)
Q Consensus        31 ~~~~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~---~~-~-~L~~li~~----~-~i~~iVVGlP~~-d---Gt   96 (123)
                      .++.+.++|+|.|..++=+++.|..+.+.. ...++..+   .. + .+.+++++    . .+.++.||.|=. |   |.
T Consensus        20 ~~~~~~~lgiDiGgt~i~~~l~d~~g~il~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~i~~igi~~pG~vd~~~g~   98 (327)
T 2ap1_A           20 FQSNAMYYGFDIGGTKIALGVFDSTRRLQW-EKRVPTPHTSYSAFLDAVCELVEEADQRFGVKGSVGIGIPGMPETEDGT   98 (327)
T ss_dssp             ---CCEEEEEEECSSEEEEEEEETTCCEEE-EEEEECCCSCHHHHHHHHHHHHHHHHHHHTSCCEEEEEESSBSCCTTSC
T ss_pred             EcCCceEEEEEECCCEEEEEEEeCCCCEEE-EEEecCCCCCHHHHHHHHHHHHHHHHHhcCCccEEEEEeeeeEECCCCE
Confidence            344567999999999999999998886543 12333211   11 2 55555543    2 377899999854 3   32


Q ss_pred             H---------HHHHHHHHhhcccCCCCCEEEec
Q 033269           97 H---------VSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 ~---------v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                      .         -..+.+.|++++   ++||.+.+
T Consensus        99 v~~~~~~~~~~~~l~~~l~~~~---~~pv~v~N  128 (327)
T 2ap1_A           99 LYAANVPAASGKPLRADLSARL---DRDVRLDN  128 (327)
T ss_dssp             CBCTTCTTTTTSCHHHHHHHHH---TSCEEEEE
T ss_pred             EEccCCCccCCCChHHHHHHHH---CCCEEEec
Confidence            1         124567888888   78987754

>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*

Probab=93.97  E-value=0.23  Score=39.94  Aligned_cols=82  Identities=13%  Similarity=0.213  Sum_probs=51.4

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeCc-----c-cc--------c-chHHHHhhc-----CcCeEEEeccC-
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA-----K-AD--------Q-ELPQLIEKH-----KVLGMVVNMPK-   92 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~-----~-~~--------~-~L~~li~~~-----~i~~iVVGlP~-   92 (123)
                      |+.+||||+|..++=+|+.|....+++  ..++.+     . ..        . .+.+++++.     ++.+| ||.|= 
T Consensus         1 m~~vlgidiGgt~ik~al~d~~~il~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~gI-i~~pG~   77 (381)
T 1saz_A            1 MFRILTINPGSTSTKLSIFEDERMVKM--QNFSHSPDELGRFQKILDQLEFREKIARQFVEETGYSLSSFSAF-VSRGGL   77 (381)
T ss_dssp             CCEEEEEEECSSEEEEEEEETTEEEEE--EEEECCHHHHHTCSSGGGGHHHHHHHHHHHHHTTTCCGGGCSEE-EEECCS
T ss_pred             CCeEEEEECCccceeEEEEecchheee--eecccCcccccchhhHHHHHHHHHHHHHHHHHHcCCCccCceEE-EecCCC
Confidence            567999999999999999996522222  233321     1 11        2 334444443     47888 99763 


Q ss_pred             -C--ChHH-----------------------HHHHHHHHhhcccCCCCCEEEecC
Q 033269           93 -E--HHEH-----------------------VSSFIEQLDGNEIYRGLPFCYFQK  121 (123)
Q Consensus        93 -~--dGt~-----------------------v~~f~~~L~~~~~~~~lpV~l~DE  121 (123)
                       +  +|..                       --.+++.|++++   ++||.+.|.
T Consensus        78 vd~~~G~~~~i~~~~~~~l~~~~~~~~~~nl~~~l~~~l~~~~---~~Pv~v~ND  129 (381)
T 1saz_A           78 LDPIPGGVYLVDGLMIKTLKSGKNGEHASNLGAIIAHRFSSET---GVPAYVVDP  129 (381)
T ss_dssp             CSCBCSSEEECCHHHHHHHHHTTTCCCTTHHHHHHHHHHHHHH---CCCEEEESC
T ss_pred             CCCCCCceEecCHHHHHHHHhcccccChhhhhHHHHHHHHHhc---CCCEEEeCC
Confidence             2  3321                       235567788888   899987764

>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}

Probab=93.94  E-value=0.12  Score=40.37  Aligned_cols=86  Identities=13%  Similarity=0.125  Sum_probs=56.1

Q ss_pred             CCCCceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc---cc-c-chHHHHh----hc-CcCeEEEeccCC-C---hH
Q 033269           31 ENAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---AD-Q-ELPQLIE----KH-KVLGMVVNMPKE-H---HE   96 (123)
Q Consensus        31 ~~~~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~---~~-~-~L~~li~----~~-~i~~iVVGlP~~-d---Gt   96 (123)
                      .++.+.++|+|+|..++=+++.|..+.+.. ...++...   .. + .+.++++    +. .+.+|-||.|=. |   |.
T Consensus        20 ~n~~~~~lgiDiGgt~i~~~l~d~~G~il~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~gigi~~pG~vd~~~g~   98 (327)
T 4db3_A           20 FQSNAMYYGFDVGGTKIEFGAFNEKLERVA-TERVPTPTDDYPLLLETIAGLVAKYDQEFACEGKIGLGLPGMEDADDAT   98 (327)
T ss_dssp             SCCSCCEEEEEECSSEEEEEEECTTCCEEE-EEEEECCTTCHHHHHHHHHHHHHHHHHHHTSCCEEEEEESEEECTTTCC
T ss_pred             ECCCcEEEEEEECCCEEEEEEEeCCCcEEE-EEEecCCCCCHHHHHHHHHHHHHHHHHhcCCccEEEEEeeccEeCCCCE
Confidence            345457999999999999999999887544 23444222   11 2 4444443    22 467888998754 3   32


Q ss_pred             ---------HHHHHHHHHhhcccCCCCCEEEec
Q 033269           97 ---------HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 ---------~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                               .-..+.+.|++++   ++||.+.+
T Consensus        99 v~~~~~~~~~~~~l~~~l~~~~---~~pV~v~N  128 (327)
T 4db3_A           99 VLTVNVPAAKGKPLRADLEAKI---GRSVKIEN  128 (327)
T ss_dssp             EEESSSGGGTTSCHHHHHHHHH---SSCCEEEE
T ss_pred             EEcCCCccccCCCHHHHHHHHH---CCCEEEec
Confidence                     1134577888888   78987754

>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}

Probab=93.90  E-value=0.16  Score=39.53  Aligned_cols=82  Identities=17%  Similarity=0.320  Sum_probs=54.9

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc---cc-c-chHHHHh----hc--CcCeEEEeccCC-C---hH---
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---AD-Q-ELPQLIE----KH--KVLGMVVNMPKE-H---HE---   96 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~---~~-~-~L~~li~----~~--~i~~iVVGlP~~-d---Gt---   96 (123)
                      ..++|+|+|..++=+++.|..+.+..- ..++..+   .. + .+.++++    ++  ++.+|-||.|=. |   |.   
T Consensus         7 ~~~lgiDiGgt~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~gigi~~pG~vd~~~g~v~~   85 (310)
T 3htv_A            7 NVVAGVDMGATHIRFCLRTAEGETLHC-EKKRTAEVIAPGLVSGIGEMIDEQLRRFNARCHGLVMGFPALVSKDKRTIIS   85 (310)
T ss_dssp             EEEEEEEECSSEEEEEEEETTSCEEEE-EEEEHHHHHTTCHHHHHHHHHHHHHHHHTEEEEEEEEEESSCBCTTSSCBCS
T ss_pred             CEEEEEEeCCCEEEEEEECCCCCEEEE-EEecCccccHHHHHHHHHHHHHHHHHhcCCCeeEEEEeccccEeCCCCEEEe
Confidence            578999999999999999998875441 2333111   12 2 4444443    33  457888988754 3   33   


Q ss_pred             -------HH--HHHHHHHhhcccCCCCCEEEec
Q 033269           97 -------HV--SSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 -------~v--~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                             ..  ..+.+.|++++   ++||.+.+
T Consensus        86 ~~~l~~~~~~~~~l~~~l~~~~---~~pv~v~N  115 (310)
T 3htv_A           86 TPNLPLTAADLYDLADKLENTL---NCPVEFSR  115 (310)
T ss_dssp             CCSSSCCHHHHTTHHHHHHHHH---TSCEEEEE
T ss_pred             CCCCCCccccCccHHHHHHHHh---CCCEEEee
Confidence                   11  35788999998   89988754

>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}

Probab=92.84  E-value=0.31  Score=39.47  Aligned_cols=83  Identities=14%  Similarity=0.163  Sum_probs=57.1

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc---cc-c-chHH---HHhhc---CcCeEEEeccCC-C---hH--
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---AD-Q-ELPQ---LIEKH---KVLGMVVNMPKE-H---HE--   96 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~---~~-~-~L~~---li~~~---~i~~iVVGlP~~-d---Gt--   96 (123)
                      ...++|+|+|..++-+++.| .+.+..-...++...   .. + .+.+   .+++.   ++.+|-||.|=. |   |.  
T Consensus         8 ~~~~lgiDIGgt~i~~~l~d-~G~il~~~~~~~~~~~~~~~~l~~i~~~~~~i~~~~~~~i~gIGIavPG~Vd~~~G~i~   86 (366)
T 3mcp_A            8 NRIVMTLDAGGTNFVFSAIQ-GGKEIADPVVLPACADCLDKCLGNLVEGFKAIQAGLPEAPVAISFAFPGPADYQAGIIG   86 (366)
T ss_dssp             CCEEEEEECSSSEEEEEEEE-TTEECSCCEEEECCTTCHHHHHHHHHHHHHHHHTTCSSCCCEEEEECCSSEETTTTEEC
T ss_pred             CCEEEEEEECcceEEEEEEE-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEEEEecceEeCCCCEEE
Confidence            56789999999999999999 876543211444221   11 3 5666   66553   799999999855 3   43  


Q ss_pred             ---H------HHHHHHHHhhcccCCCCCEEEec
Q 033269           97 ---H------VSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 ---~------v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                         .      -..+.+.|++++   ++||.+.+
T Consensus        87 ~~~nlp~w~~~~~l~~~L~~~~---g~PV~veN  116 (366)
T 3mcp_A           87 DLPNFPSFRGGVALGPFLEDIF---GIPVFINN  116 (366)
T ss_dssp             CCTTCGGGTTCBCHHHHHHHHH---CSCEEEEC
T ss_pred             eCCCcccccCCCCHHHHHHHHH---CCCEEEec
Confidence               1      124567899888   89988765

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=92.83  E-value=0.37  Score=37.55  Aligned_cols=80  Identities=14%  Similarity=0.074  Sum_probs=48.4

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeC---ccccc--chHHHHhhcC-----cCeEEEeccCCChHHHHHHHH
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDR---AKADQ--ELPQLIEKHK-----VLGMVVNMPKEHHEHVSSFIE  103 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~---~~~~~--~L~~li~~~~-----i~~iVVGlP~~dGt~v~~f~~  103 (123)
                      |+.+|+||+|..++=+|+.|....+..  ..++.   +...+  .|.++++.++     +++++|+-|-.  .....+.+
T Consensus         1 M~MlL~IDIGNT~iK~gl~d~~~l~~~--~r~~T~~~t~de~~~~l~~ll~~~~~~~~~I~~iiISSVvp--~~~~~l~~   76 (266)
T 3djc_A            1 MSLILCIDVGNSHIYGGVFDGDEIKLR--FRHTSKVSTSDELGIFLKSVLRENNCSPETIRKIAICSVVP--QVDYSLRS   76 (266)
T ss_dssp             --CEEEEEECSSEEEEEEEETTEEEEE--EEEECSCCCHHHHHHHHHHHHHTTTCCGGGCCEEEEEESCH--HHHHHHHH
T ss_pred             CceEEEEEECCCeEEEEEEECCEEEEE--EEecCCCCCHHHHHHHHHHHHHHcCCChhhceEEEEecchH--hHHHHHHH
Confidence            457899999999999999996533322  22321   11223  7778887765     88999996543  13334444


Q ss_pred             HHhhcccCCCCCEEEec
Q 033269          104 QLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus       104 ~L~~~~~~~~lpV~l~D  120 (123)
                      .+++.+   ++++.+++
T Consensus        77 ~~~~~~---~~~~~~v~   90 (266)
T 3djc_A           77 ACVKYF---SIDPFLLQ   90 (266)
T ss_dssp             HHHHHT---CCCCEECC
T ss_pred             HHHHHc---CCCeEEEc
Confidence            455445   45555544

>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A

Probab=92.20  E-value=0.77  Score=34.72  Aligned_cols=81  Identities=12%  Similarity=0.130  Sum_probs=52.6

Q ss_pred             eEEEEecCCCeEEEEEeeCCCceeecceeeeCcc-ccc--chHHHHhhcC-----cCeEEEec-cCC-ChH-HHHHHHHH
Q 033269           36 GILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK-ADQ--ELPQLIEKHK-----VLGMVVNM-PKE-HHE-HVSSFIEQ  104 (123)
Q Consensus        36 riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~-~~~--~L~~li~~~~-----i~~iVVGl-P~~-dGt-~v~~f~~~  104 (123)
                      ++||||-=+..+++|+.+....++.. ....++. ..+  .+.+++++.+     ++.|++|. |=+ -|- ....+++.
T Consensus         2 ~iL~idTs~~~~sval~~~~~~~~~~-~~~~~~h~~~l~~~i~~~L~~a~~~~~did~Iav~~GPGsftglRig~~~ak~   80 (231)
T 2gel_A            2 RILAIDTATEACSVALWNNGTINAHF-ELCPREHTQRILPMVQEILAASGASLNEIDALAFGRGPGSFTGVRIGIGIAQG   80 (231)
T ss_dssp             EEEEEECSSSEEEEEEEETTEEEEEE-EECCSCCHHHHHHHHHHHHHHTTCCGGGCSEEEEECCSSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCcCeEEEEEECCEEEEEE-hhhhHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCChhHhHHHHHHHHHH
Confidence            68999999999999999854333321 1112211 223  7777777654     78999983 222 222 44588888


Q ss_pred             HhhcccCCCCCEEEec
Q 033269          105 LDGNEIYRGLPFCYFQ  120 (123)
Q Consensus       105 L~~~~~~~~lpV~l~D  120 (123)
                      |....   ++|++-++
T Consensus        81 la~~~---~~Pl~~V~   93 (231)
T 2gel_A           81 LALGA---NLPMIGVS   93 (231)
T ss_dssp             HHHTT---TCCEEEEC
T ss_pred             HHHHc---CCCEEEec
Confidence            88766   78887664

>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10

Probab=91.82  E-value=0.27  Score=37.17  Aligned_cols=82  Identities=12%  Similarity=0.213  Sum_probs=53.7

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc----cc-c-chHHHHhhc--CcCeEEEeccCC-C---hH-----H
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK----AD-Q-ELPQLIEKH--KVLGMVVNMPKE-H---HE-----H   97 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~----~~-~-~L~~li~~~--~i~~iVVGlP~~-d---Gt-----~   97 (123)
                      |.++|+|.|..++=+++.|..+.+.. ...++...    .. + .+.+++++.  ++..+.||.|=. |   |.     .
T Consensus         1 m~~lgidiggt~~~~~l~d~~g~il~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~igi~~pG~vd~~~g~v~~~~~   79 (289)
T 2aa4_A            1 MTTLAIDIGGTKLAAALIGADGQIRD-RRELPTPASQTPEALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHN   79 (289)
T ss_dssp             CCEEEEEECSSEEEEEEECTTCCEEE-EEEEECCSSCCHHHHHHHHHHHHTTTGGGCSEEEEEESSEEETTEEECSSGGG
T ss_pred             CeEEEEEeCCCEEEEEEECCCCCEEE-EEEecCCCCCCHHHHHHHHHHHHHHHHhhCCEEEEEeccceeCCCCEEEeCCC
Confidence            36899999999999999998876543 23333221    12 3 666666543  356788888754 3   21     1


Q ss_pred             -----HHHHHHHHhhcccCCCCCEEEec
Q 033269           98 -----VSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        98 -----v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                           -..+.+.|++++   ++||.+.+
T Consensus        80 ~~~w~~~~l~~~l~~~~---~~pv~v~N  104 (289)
T 2aa4_A           80 LGGLLHFPLVKTLEQLT---NLPTIAIN  104 (289)
T ss_dssp             GGGGTTCCHHHHHHHHH---CSCEEEEE
T ss_pred             CCcccCCChHHHHHHHH---CCCEEEec
Confidence                 124578888888   78988765

>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*

Probab=91.43  E-value=0.54  Score=36.61  Aligned_cols=81  Identities=16%  Similarity=0.157  Sum_probs=54.4

Q ss_pred             CceEEEEecCCCeEEEEEeeC-CCceeecceeeeCcc-ccc--chHHHHhhc--CcCeEEEeccCC-C-hH--------H
Q 033269           34 GLGILGLDVGNKYIGVSLFKR-HGNEVEPLTKFDRAK-ADQ--ELPQLIEKH--KVLGMVVNMPKE-H-HE--------H   97 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~-~~~~a~Pl~~i~~~~-~~~--~L~~li~~~--~i~~iVVGlP~~-d-Gt--------~   97 (123)
                      |..++|+|+|..++=+|+.|. .+.+.. ...++... ..+  .+.+++++.  ++.++.||.|=- | |.        .
T Consensus        13 ~~~~lgiDiGGT~i~~~l~dl~~g~i~~-~~~~~~~~~~~~~~~i~~~~~~~~~~i~gigi~~pG~vd~~~~~~~nl~w~   91 (332)
T 1sz2_A           13 TKYALVGDVGGTNARLALCDIASGEISQ-AKTYSGLDYPSLEAVIRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTWA   91 (332)
T ss_dssp             -CEEEEEEEETTEEEEEEEETTTCCEEE-EEEEEGGGCSCHHHHHHHHHHHSCCCCCEEEEEESSCCCSSEECCSSSCCC
T ss_pred             CCEEEEEEechhheEEEEEECCCCcEEE-EEEecCCCcCCHHHHHHHHHHhcCCCccEEEEEEeCceeCCEEeeeCCCCc
Confidence            889999999999999999994 566543 23444222 223  566666654  578899999865 4 32        1


Q ss_pred             HHHHHHHHhhcccCCCCC-EEEec
Q 033269           98 VSSFIEQLDGNEIYRGLP-FCYFQ  120 (123)
Q Consensus        98 v~~f~~~L~~~~~~~~lp-V~l~D  120 (123)
                       .. .+.|++++   ++| |.+.+
T Consensus        92 -~~-~~~l~~~~---~~p~V~v~N  110 (332)
T 1sz2_A           92 -FS-IAEMKKNL---GFSHLEIIN  110 (332)
T ss_dssp             -EE-HHHHHHHH---TCSEEEEEE
T ss_pred             -CC-HHHHHHHh---CCCcEEEEe
Confidence             12 36778888   788 87654

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*

Probab=91.42  E-value=0.75  Score=36.28  Aligned_cols=84  Identities=11%  Similarity=0.090  Sum_probs=52.2

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc-------------ccc--chHHHHhh-----cCcCeEEEe-ccCC
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK-------------ADQ--ELPQLIEK-----HKVLGMVVN-MPKE   93 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~-------------~~~--~L~~li~~-----~~i~~iVVG-lP~~   93 (123)
                      |.+||||-+...+++|+.+....++.-...+.+..             ..+  .+++++++     ..++.|+++ -|=.
T Consensus         1 M~iLgIdts~~~~~val~~~g~i~~~~~~~~~~~~gg~~p~~~~~~h~~~l~~~i~~~L~~agi~~~did~Ia~~~GPG~   80 (330)
T 2ivn_A            1 MLALGIEGTAHTLGIGIVSEDKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQGPGL   80 (330)
T ss_dssp             CCEEEEECSSSEEEEEEECSSCEEEEEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEEEEESSC
T ss_pred             CEEEEEEccCCCeEEEEEECCEEEEEEEEEeecccCCcCchhhHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCc
Confidence            57999999999999999986544443211111100             112  45566555     357889874 2322


Q ss_pred             -ChH-HHHHHHHHHhhcccCCCCCEEEecC
Q 033269           94 -HHE-HVSSFIEQLDGNEIYRGLPFCYFQK  121 (123)
Q Consensus        94 -dGt-~v~~f~~~L~~~~~~~~lpV~l~DE  121 (123)
                       -|- ....|++.|...+   ++|++.+++
T Consensus        81 ~~~lrvg~~~ak~la~~~---~~pl~~v~h  107 (330)
T 2ivn_A           81 GPALRVVATAARALAVKY---RKPIVGVNH  107 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHT---TCCEEEEEH
T ss_pred             hHHHHHHHHHHHHHHHHc---CCCEEeeCc
Confidence             222 4456888888766   789888765

>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}

Probab=90.77  E-value=0.44  Score=37.74  Aligned_cols=84  Identities=12%  Similarity=0.053  Sum_probs=50.8

Q ss_pred             CceEEEEecCCCeEEEEEeeC----CCceeecceeeeCcc-cc-c-chHHHHhhc------CcCeEEEeccCC-C-hHHH
Q 033269           34 GLGILGLDVGNKYIGVSLFKR----HGNEVEPLTKFDRAK-AD-Q-ELPQLIEKH------KVLGMVVNMPKE-H-HEHV   98 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~----~~~~a~Pl~~i~~~~-~~-~-~L~~li~~~------~i~~iVVGlP~~-d-Gt~v   98 (123)
                      |+.++|+|+|..++=+|+.|.    .+.+..-....+..+ .. + .+.+++++.      ++.++.||.|=. | |...
T Consensus        28 ~~~~lgiDiGgt~i~~~l~d~~~~~~g~il~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~gigi~~pG~vd~g~v~  107 (373)
T 2q2r_A           28 APLTFVGDVGGTSARMGFVREGKNDSVHACVTRYSMKRKDITEIIEFFNEIIELMPASVMKRVKAGVINVPGPVTGGAVG  107 (373)
T ss_dssp             SCEEEEEEECSSEEEEEEEEECGGGCEEEEEEEEECTTCBGGGHHHHHHHHHHHSCHHHHTTEEEEEEEESSCEETTTEE
T ss_pred             CCeEEEEEEccccEEEEEEecccCCCccEEEEeeecCCCCHHHHHHHHHHHHHHHhhcccccccEEEEEeeccccCCEEe
Confidence            778999999999999999997    665433111122111 22 3 566665542      477899999876 4 4311


Q ss_pred             ---------HHHHHHHhhcccCCCC-CEEEec
Q 033269           99 ---------SSFIEQLDGNEIYRGL-PFCYFQ  120 (123)
Q Consensus        99 ---------~~f~~~L~~~~~~~~l-pV~l~D  120 (123)
                               -.+.+.+++++   ++ ||.+.+
T Consensus       108 ~~~~~~~~~~~l~~~l~~~~---~~~pv~v~N  136 (373)
T 2q2r_A          108 GPFNNLKGIARLSDYPKALF---PPGHSAILN  136 (373)
T ss_dssp             CCCSSSBSCEEGGGSCTTTS---CTTSEEEEE
T ss_pred             ccCCCCCCcCCHHHHHHHhc---CCCCEEEEc
Confidence                     13333444445   56 777654

>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9

Probab=90.13  E-value=1.6  Score=32.97  Aligned_cols=82  Identities=11%  Similarity=-0.051  Sum_probs=52.3

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc-ccc--chHHHHhhc-----CcCeEEEec-cCC-ChH-HHHHHHH
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK-ADQ--ELPQLIEKH-----KVLGMVVNM-PKE-HHE-HVSSFIE  103 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~-~~~--~L~~li~~~-----~i~~iVVGl-P~~-dGt-~v~~f~~  103 (123)
                      -.|||||-=+..|++|+.+....+ +-.....+.. +.+  .+.+++++.     +++.|+||. |=+ -|- ....+++
T Consensus        12 ~~iLaidTS~~~~sval~~~~~~l-~~~~~~~r~Hse~L~p~i~~~L~~a~~~~~dld~Iav~~GPGsfTGlRiG~~~Ak   90 (218)
T 2a6a_A           12 HMNVLALDTSQRIRIGLRKGEDLF-EISYTGEKKHAEILPVVVKKLLDELDLKVKDLDVVGVGIGPGGLTGLRVGIATVV   90 (218)
T ss_dssp             -CEEEEEECSSSEEEEEEETTEEE-EEEEESCGGGGGHHHHHHHHHHHHHTCCGGGCSEEEEECCSSCHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCcCeEEEEEECCEEE-EEEecchHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCchHhHHHHHHHHH
Confidence            468999999999999999854333 2111112211 223  777777654     479999982 211 111 6677899


Q ss_pred             HHhhcccCCCCCEEEec
Q 033269          104 QLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus       104 ~L~~~~~~~~lpV~l~D  120 (123)
                      .|+...   ++|++-++
T Consensus        91 ~La~~~---~iPl~gVs  104 (218)
T 2a6a_A           91 GLVSPY---DIPVAPLN  104 (218)
T ss_dssp             HHHGGG---TCCEEEEC
T ss_pred             HHHHHc---CCCEEEeC
Confidence            998777   88887553

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=90.07  E-value=0.44  Score=37.87  Aligned_cols=82  Identities=13%  Similarity=0.117  Sum_probs=54.4

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCc---c-c-cc-c----hHHHHhh-----cCcCeEEEeccCC-C---h
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA---K-A-DQ-E----LPQLIEK-----HKVLGMVVNMPKE-H---H   95 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~---~-~-~~-~----L~~li~~-----~~i~~iVVGlP~~-d---G   95 (123)
                      ..++|+|+|..++=+++.|..+.+.. ...++.+   + . .+ .    +.+++++     .++.++.||.|=. |   |
T Consensus        87 ~~~lGIDiGgt~i~~~l~d~~G~vl~-~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~~g  165 (380)
T 2hoe_A           87 AYVLGIEVTRDEIAACLIDASMNILA-HEAHPLPSQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAAPGPIDTERG  165 (380)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCCEEE-EEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEESSCEETTTT
T ss_pred             CeEEEEEECCCEEEEEEECCCCCEEE-EEEEccCCCCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEeeccEECCCC
Confidence            56899999999999999998886543 1233321   1 1 12 3    3444433     3688999999875 3   3


Q ss_pred             HH---------HHHHHHHHhhcccCCCCCEEEec
Q 033269           96 EH---------VSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        96 t~---------v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                      ..         -..+.+.|++++   ++||.+.+
T Consensus       166 ~v~~~~~l~w~~~~l~~~l~~~~---~~pV~v~N  196 (380)
T 2hoe_A          166 IIIDPRNFPLSQIPLANLLKEKY---GIEVWVEN  196 (380)
T ss_dssp             EECCCSSCTTBTSCHHHHHHHHH---CSEEEEEE
T ss_pred             EEeccCCCCCcCCChHHHHHHHh---CCCEEEec
Confidence            21         125677888888   78988765

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A

Probab=89.86  E-value=0.58  Score=37.31  Aligned_cols=82  Identities=15%  Similarity=0.164  Sum_probs=53.0

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCc--c-cc-c-ch----HHHHhh-----cCcCeEEEeccCC-C---hH
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--K-AD-Q-EL----PQLIEK-----HKVLGMVVNMPKE-H---HE   96 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~--~-~~-~-~L----~~li~~-----~~i~~iVVGlP~~-d---Gt   96 (123)
                      ..++|+|+|..++=+++.|..+.+.. ...++..  + .. + .+    .+++++     .++.+|.||.|=. |   |.
T Consensus        85 ~~~lgiDiG~t~i~~~l~d~~G~il~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~~g~  163 (406)
T 1z6r_A           85 WHYLSLRISRGEIFLALRDLSSKLVV-EESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGI  163 (406)
T ss_dssp             CEEEEEEEETTEEEEEEEETTCCEEE-EEEEECCSSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEESSEEETTTTE
T ss_pred             cEEEEEEEcCCEEEEEEEcCCCCEEE-EEEecCCCCCHHHHHHHHHHHHHHHHHhcCCCcCceeEEEEEeecCEeCCCCE
Confidence            56899999999999999998886543 1223211  1 12 2 44    444443     3577888988864 3   32


Q ss_pred             -----H-----HHHHHHHHhhcccCCCCCEEEec
Q 033269           97 -----H-----VSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 -----~-----v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                           .     -..+.+.|++++   ++||.+.+
T Consensus       164 v~~~~~l~~w~~~~l~~~l~~~~---~~pv~v~N  194 (406)
T 1z6r_A          164 VHRMPFYEDVKEMPLGEALEQHT---GVPVYIQH  194 (406)
T ss_dssp             EEECTTCTTCSSBCHHHHHHHHH---SSCEEEEE
T ss_pred             EecCCCCCCccCCCHHHHHHHHH---CCCEEEec
Confidence                 1     124567888888   78988765

>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10

Probab=89.71  E-value=0.75  Score=34.62  Aligned_cols=83  Identities=13%  Similarity=0.179  Sum_probs=52.0

Q ss_pred             ceEEEEecCCCeEEEEEeeCC-CceeecceeeeCc---c-cc-c-chHHHHhhc--------CcCeEEEeccCC--ChH-
Q 033269           35 LGILGLDVGNKYIGVSLFKRH-GNEVEPLTKFDRA---K-AD-Q-ELPQLIEKH--------KVLGMVVNMPKE--HHE-   96 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~-~~~a~Pl~~i~~~---~-~~-~-~L~~li~~~--------~i~~iVVGlP~~--dGt-   96 (123)
                      +.++|+|+|..++=+++.|.. +.+..-...++..   + .. + .+.+++++.        .+.+|-||.|=.  +|+ 
T Consensus        12 ~~~lgidiggt~i~~~l~dl~~g~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~igi~~pG~v~~g~v   91 (267)
T 1woq_A           12 APLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPATPESVAEAVALVVAELSARPEAPAAGSPVGVTFPGIIQHGVV   91 (267)
T ss_dssp             CCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHTSTTCCCTTCCEEEEESSCEETTEE
T ss_pred             CEEEEEEECCCEEEEEEEECCCCeEEEEEEecCCCccCCHHHHHHHHHHHHHHHHHhccccCccceEEEEccceEcCCEE
Confidence            578999999999999999976 5543211233321   1 11 2 444444332        345789999865  343 


Q ss_pred             ----H------HHHHHHHHhhcccCCCCCEEEec
Q 033269           97 ----H------VSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 ----~------v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                          .      -..+.+.|++++   ++||.+.+
T Consensus        92 ~~~~~l~~~w~~~~l~~~l~~~~---~~pV~v~N  122 (267)
T 1woq_A           92 HSAANVDKSWLNTDIDALLTARL---GRPVEVIN  122 (267)
T ss_dssp             CCCTTSCGGGTTCBHHHHHHHHH---TSCEEEEE
T ss_pred             EeCCCCCCCCCCCCHHHHHHHHH---CCCEEEee
Confidence                1      124467888888   89988765

>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=89.38  E-value=0.51  Score=38.15  Aligned_cols=83  Identities=17%  Similarity=0.292  Sum_probs=53.9

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc---c-cc-c----hHHHHhhc-----CcCeEEEeccCC-C---h
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---A-DQ-E----LPQLIEKH-----KVLGMVVNMPKE-H---H   95 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~---~-~~-~----L~~li~~~-----~i~~iVVGlP~~-d---G   95 (123)
                      ...++|+|+|..++=+++.|..+.+.. ...++.+.   . .+ .    +.+++++.     ++.+|.||.|=. |   |
T Consensus       107 ~~~~lGIDiGgt~i~~~l~d~~G~il~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~~g  185 (429)
T 1z05_A          107 GWQFLSMRLGRGYLTIALHELGGEVLI-DTKIDIHEIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSEQG  185 (429)
T ss_dssp             TEEEEEEEEETTEEEEEEEETTSCEEE-EEEEECCCCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEESSEEETTTT
T ss_pred             CCEEEEEEECCCEEEEEEECCCCCEEE-EEEEcCCCCCHHHHHHHHHHHHHHHHHhcCCCcCceEEEEEeccCcEeCCCC
Confidence            357899999999999999998886543 12333211   1 12 3    34444443     466888888864 3   4


Q ss_pred             H---------HHHHHHHHHhhcccCCCCCEEEec
Q 033269           96 E---------HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        96 t---------~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                      .         .-..+++.|++++   ++||.+.+
T Consensus       186 ~v~~~~~l~w~~~~l~~~L~~~~---~~pV~v~N  216 (429)
T 1z05_A          186 IVLQMPHYNVKNLALGPEIYKAT---GLPVFVAN  216 (429)
T ss_dssp             EEEECSSSBCSSBCHHHHHHHHH---CSCEEEEE
T ss_pred             eEeecCCCCCCCCCHHHHHHHHh---CCCEEEec
Confidence            3         1135678888888   89988765

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}

Probab=88.42  E-value=1  Score=34.83  Aligned_cols=85  Identities=21%  Similarity=0.189  Sum_probs=55.6

Q ss_pred             CCceEEEEecCCCeEEEEEeeCCCceeecceeeeCc---c-cc-c-chHHHHh-----hcCcCeEEEeccCC-C---hH-
Q 033269           33 AGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA---K-AD-Q-ELPQLIE-----KHKVLGMVVNMPKE-H---HE-   96 (123)
Q Consensus        33 ~~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~---~-~~-~-~L~~li~-----~~~i~~iVVGlP~~-d---Gt-   96 (123)
                      ....++|+|+|..++=+++.|..+.+.. ...++..   + .. + .+.+.++     ..++.+|.||.|=. |   |. 
T Consensus        17 ~~~~~lgidiggt~i~~~l~d~~g~il~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~i~gigi~~pG~vd~~~g~v   95 (321)
T 3r8e_A           17 FQGMILGIDVGGTSVKFGLVTPEGEIQN-ATRFMTADWVNGIGFVESMKLEIGNFLKQYPIVKGVGIGWPGLVSLDRTKV   95 (321)
T ss_dssp             --CCEEEEECCSSEEEEEEECTTCCEEE-EEEEEHHHHHTTTCHHHHHHHHHHHHHHHCTTCCEEEEEESSEECTTSCCE
T ss_pred             cCcEEEEEEECCCEEEEEEEcCCCcEEE-EEEEeCCCCCCHHHHHHHHHHHHHHHHhccCCeeEEEEEecccEECCCCEE
Confidence            3578999999999999999998887544 2334321   1 12 2 4444443     35799999999854 4   32 


Q ss_pred             ---------HHHHHHHHHhhcccCCCCCEEEec
Q 033269           97 ---------HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 ---------~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                               .-..+.+.|+++++  ++||.+.+
T Consensus        96 ~~~~~l~~w~~~~l~~~l~~~~~--~~pV~v~N  126 (321)
T 3r8e_A           96 ILLPNIPSVVNVPIVEILRSEFP--HIHFKIEN  126 (321)
T ss_dssp             EEBTTBCCCCSCCHHHHHHHHCT--TSEEEEEE
T ss_pred             EeCCCCccccCCCHHHHHHHHcC--CCCEEEEc
Confidence                     11345677888875  68887754

>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}

Probab=87.67  E-value=1.8  Score=34.42  Aligned_cols=84  Identities=13%  Similarity=0.115  Sum_probs=53.4

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeC------------cc-ccc--chHHHHhh-----cCcCeEEEec-cC
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDR------------AK-ADQ--ELPQLIEK-----HKVLGMVVNM-PK   92 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~------------~~-~~~--~L~~li~~-----~~i~~iVVGl-P~   92 (123)
                      +|.|||||--...+++|+.+....++.-...+.+            .. +.+  .+++++++     .+++.|.++. |-
T Consensus         5 ~M~iLgIdts~~~~svAl~~~~~i~~~~~~~~~~~~gGv~p~~a~~~H~~~l~~~i~~~L~~ag~~~~did~Iav~~gPG   84 (334)
T 3eno_A            5 PMIVLGLEGTAHTISCGIIDESRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGFSMGPG   84 (334)
T ss_dssp             CCEEEEEECSSSEEEEEEEESSCCCEEEEEECCCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSSS
T ss_pred             CceEEEEECCCcCeEEEEEECCEEEEEEEEeeccccCCcCcchHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCC
Confidence            5899999999999999999966555442111110            00 122  56666655     4689999983 32


Q ss_pred             C-ChH-HHHHHHHHHhhcccCCCCCEEEec
Q 033269           93 E-HHE-HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        93 ~-dGt-~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                      . -|- ....+++.|...+   ++|++.++
T Consensus        85 ~~t~lrvg~~~ak~La~~~---~~Pl~~v~  111 (334)
T 3eno_A           85 LAPSLRVTATAARTISVLT---GKPIIGVN  111 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHH---TCCCEEEC
T ss_pred             CcchHHHHHHHHHHHhhcc---CCCeEEec
Confidence            2 222 5556777777666   77887664

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=87.09  E-value=1.7  Score=36.34  Aligned_cols=84  Identities=14%  Similarity=0.127  Sum_probs=51.8

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecce-eee--------Cc--c---ccc--chHHHHhh---cCcCeEEEec-cCC
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLT-KFD--------RA--K---ADQ--ELPQLIEK---HKVLGMVVNM-PKE   93 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~-~i~--------~~--~---~~~--~L~~li~~---~~i~~iVVGl-P~~   93 (123)
                      +|++||||--...+++|+.+..+.+..... ...        ..  .   +.+  -+.+++++   .+++.|+++. |=.
T Consensus         5 ~m~iL~i~ts~~~~~~al~~~~~~~~~~~~~~~~~~~gg~~p~~a~~~h~~~l~~~i~~~l~~~~~~~id~ia~~~gPG~   84 (540)
T 3en9_A            5 PMICLGLEGTAEKTGVGIVTSDGEVLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAFEVVDKNEIDLIAFSQGPGL   84 (540)
T ss_dssp             SCEEEEEECSSSEEEEEEEETTSCEEEEEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHHSCGGGCCEEEEEEESSC
T ss_pred             cceEEEEEcCccceEEEEEECCCeEEEEEEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCHhHCcEEEEecCCCc
Confidence            489999999999999999997744333221 111        00  0   112  33444443   4789998873 333


Q ss_pred             -ChH-HHHHHHHHHhhcccCCCCCEEEec
Q 033269           94 -HHE-HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        94 -dGt-~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                       -|- ....+|+.|+...   ++|++-++
T Consensus        85 ~~~l~vg~~~ak~la~~~---~~p~~~v~  110 (540)
T 3en9_A           85 GPSLRVTATVARTLSLTL---KKPIIGVN  110 (540)
T ss_dssp             HHHHHHHHHHHHHHHHHH---TCCEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHh---CCCeeEec
Confidence             222 5566777777666   78877654

>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A

Probab=86.93  E-value=1  Score=34.93  Aligned_cols=86  Identities=14%  Similarity=0.159  Sum_probs=54.0

Q ss_pred             CCCCceEEEEecCCCeEEEEEeeCCCceeecceeeeCc-c--ccc-chH----HHHhh-----cCcCeEEEeccCC-C--
Q 033269           31 ENAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA-K--ADQ-ELP----QLIEK-----HKVLGMVVNMPKE-H--   94 (123)
Q Consensus        31 ~~~~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~-~--~~~-~L~----~li~~-----~~i~~iVVGlP~~-d--   94 (123)
                      .++.+.++|+|+|..++=+++.|..+.+..- ...+.. +  ..+ .+.    +++.+     .++.+|.||.|=. |  
T Consensus        26 ~~~~~~~lgiDiGgt~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~  104 (343)
T 2yhw_A           26 FQGTLSALAVDLGGTNLRVAIVSMKGEIVKK-YTQFNPKTYEERINLILQMCVEAAAEAVKLNCRILGVGISTGGRVNPR  104 (343)
T ss_dssp             --CEEEEEEEEECSSEEEEEEEETTSCEEEE-EEEECCSSHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEESSEEETT
T ss_pred             eCCCcEEEEEEECCCEEEEEEECCCCcEEEE-EEEcCCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEEecccCEeCC
Confidence            3445789999999999999999988875432 233322 1  112 333    33332     3577888988764 3  


Q ss_pred             -hHH-----H------HHHHHHHhhcccCCCCCEEEec
Q 033269           95 -HEH-----V------SSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        95 -Gt~-----v------~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                       |..     .      ..+.+.|++++   ++||.+.+
T Consensus       105 ~g~v~~~~~~~~~w~~~~l~~~l~~~~---~~pv~v~N  139 (343)
T 2yhw_A          105 EGIVLHSTKLIQEWNSVDLRTPLSDTL---HLPVWVDN  139 (343)
T ss_dssp             TTEEEECCTTSSSCSSEECHHHHHHHH---CSCEEEEE
T ss_pred             CCEEEeCCcCCCCCcCCCHHHHHHHHH---CCCEEEec
Confidence             320     1      23467888888   78988765

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=85.53  E-value=0.4  Score=37.59  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=17.4

Q ss_pred             CceEEEEecCCCeEEEEEeeC
Q 033269           34 GLGILGLDVGNKYIGVSLFKR   54 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~   54 (123)
                      |+.++|||+|+..+++|+.+.
T Consensus         1 m~~~vGIDlGTt~s~va~~~~   21 (383)
T 1dkg_D            1 MGKIIGIDLGTTNSCVAIMDG   21 (383)
T ss_dssp             --CCCEEECCSSEEEEEEEET
T ss_pred             CCcEEEEEcCCCCEEEEEEEC
Confidence            567899999999999999864

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=83.85  E-value=1.1  Score=33.71  Aligned_cols=26  Identities=23%  Similarity=0.342  Sum_probs=22.8

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceee
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVE   60 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~   60 (123)
                      |.+||||.|+..|=+|+.|..+.+..
T Consensus         1 M~~lGID~GsT~tk~av~d~~~~il~   26 (276)
T 4ehu_A            1 MYTMGLDIGSTASKGVILKNGEDIVA   26 (276)
T ss_dssp             CEEEEEEECSSCEEEEEEETTTEEEE
T ss_pred             CeEEEEEcCccEEEEEEEECCCeEEE
Confidence            67899999999999999998887654

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=83.70  E-value=7.8  Score=28.51  Aligned_cols=80  Identities=15%  Similarity=0.203  Sum_probs=42.5

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCce-eec---ceeeeCcc-cc-------c-chHHHHhh---cCcCeEEEeccCC-ChHH
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNE-VEP---LTKFDRAK-AD-------Q-ELPQLIEK---HKVLGMVVNMPKE-HHEH   97 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~-a~P---l~~i~~~~-~~-------~-~L~~li~~---~~i~~iVVGlP~~-dGt~   97 (123)
                      ..++|||.|+..+=+++.|..+.+ ...   -..+.... .+       + .+.+....   ..+..+|+..|.. .. .
T Consensus        28 ~~~~gIDiGS~s~k~vi~~~~~~~l~~~~~~~~~l~~g~i~d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~-~  106 (272)
T 3h1q_A           28 PYKVGVDLGTADIVLVVTDQEGIPVAGALKWASVVKDGLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVG-R  106 (272)
T ss_dssp             CCEEEEECCSSEEEEEEECTTCCEEEEEEEECCCCBTTBCTTHHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC----
T ss_pred             CEEEEEEcccceEEEEEECCCCcEEEEEeecccccCCCEEEcHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCH-H
Confidence            468999999999999998866542 211   11111110 11       1 22222222   3567899999986 32 2


Q ss_pred             HHHHHHHHhhcccCCCCCEEE
Q 033269           98 VSSFIEQLDGNEIYRGLPFCY  118 (123)
Q Consensus        98 v~~f~~~L~~~~~~~~lpV~l  118 (123)
                      .+++.+...+..   ++++..
T Consensus       107 ~~~~~~~~~~~~---g~~~~~  124 (272)
T 3h1q_A          107 NAEACGHVVAGA---GLELVT  124 (272)
T ss_dssp             CTTHHHHHHHHT---TCEEEE
T ss_pred             HHHHHHHHHHHc---CCeeee
Confidence            233444444444   666543

>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}

Probab=83.56  E-value=1.3  Score=33.45  Aligned_cols=54  Identities=13%  Similarity=0.230  Sum_probs=37.6

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc----cc-c-chHHHHhhcCcCeEEEeccCC
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK----AD-Q-ELPQLIEKHKVLGMVVNMPKE   93 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~----~~-~-~L~~li~~~~i~~iVVGlP~~   93 (123)
                      +.++|+|+|..++=+  .|..+.+.   ..++...    .. + .+.++++++++.++-||.|=.
T Consensus         6 ~~~lgiDIGGT~i~~--~d~~g~~~---~~~~t~~~~~~~~~~~~i~~~i~~~~i~gigi~~pG~   65 (226)
T 3lm2_A            6 QTVLAIDIGGSHVKI--GLSTDGEE---RKVESGKTMTGPEMVAAVTAMAKDMTYDVIAMGYPGP   65 (226)
T ss_dssp             CCEEEEEECSSEEEE--EETTTCCE---EEEECCTTCCHHHHHHHHHHHTTTCCCSEEEEEESSC
T ss_pred             CEEEEEEECCCEEEE--EECCCCEE---EEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeE
Confidence            468999999998884  56666541   2232111    22 3 778888888999999999866

>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}

Probab=83.03  E-value=6.5  Score=30.34  Aligned_cols=77  Identities=17%  Similarity=0.185  Sum_probs=47.8

Q ss_pred             EEEEecCCCeEEEEEeeCCCceeecceeeeCcc----ccc--chHHHHhhc-----CcCeEEEeccCCChHHHHHHHHHH
Q 033269           37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK----ADQ--ELPQLIEKH-----KVLGMVVNMPKEHHEHVSSFIEQL  105 (123)
Q Consensus        37 iLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~----~~~--~L~~li~~~-----~i~~iVVGlP~~dGt~v~~f~~~L  105 (123)
                      +|+||+|..++=+|+.|....+..  ..+..+.    ..+  .+.++++.+     +++++++--+.  -.....+.+.+
T Consensus         2 lL~IDIGNT~ik~gl~~~~~l~~~--~r~~T~~~~t~de~~~~l~~ll~~~~~~~~~i~~iiISSVv--p~~~~~l~~~~   77 (268)
T 2h3g_X            2 IFVLDVGNTNAVLGVFEEGELRQH--WRMETDRHKTEDEYGMLVKQLLEHEGLSFEDVKGIIVSSVV--PPIMFALERMC   77 (268)
T ss_dssp             EEEEEECSSEEEEEEEETTEEEEE--EEEECCTTCCHHHHHHHHHHHHHHTTCCGGGCCEEEEEESC--HHHHHHHHHHH
T ss_pred             EEEEEECcCcEEEEEEECCEEEEE--EEecCCCcCCHHHHHHHHHHHHHHcCCCcccCcEEEEEccC--hhHHHHHHHHH
Confidence            699999999999999995544333  2222111    123  677777765     47889887442  22444555566


Q ss_pred             hhcccCCCCCEEEec
Q 033269          106 DGNEIYRGLPFCYFQ  120 (123)
Q Consensus       106 ~~~~~~~~lpV~l~D  120 (123)
                      ++.+   ++++.++.
T Consensus        78 ~~~~---~~~~~~v~   89 (268)
T 2h3g_X           78 EKYF---KIKPLVVG   89 (268)
T ss_dssp             HHHT---CCCCEECS
T ss_pred             HHHh---CCCeEEEc
Confidence            6655   56655553

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5

Probab=82.32  E-value=1.8  Score=33.02  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             eEEEEecCCCeEEEEEeeCCCcee
Q 033269           36 GILGLDVGNKYIGVSLFKRHGNEV   59 (123)
Q Consensus        36 riLglD~G~kriGlAvsD~~~~~a   59 (123)
                      .++|+|.|..++=+++.|..+.+.
T Consensus        12 ~~lGiDiGgT~i~~~l~d~~G~il   35 (305)
T 1zc6_A           12 YLIGVDGGGTGTRIRLHASDGTPL   35 (305)
T ss_dssp             EEEEEEECSSCEEEEEEETTCCEE
T ss_pred             EEEEEEcCccceEEEEEcCCCCEE
Confidence            689999999999999999887654

>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*

Probab=81.98  E-value=4.5  Score=31.80  Aligned_cols=86  Identities=15%  Similarity=0.237  Sum_probs=55.2

Q ss_pred             CCCceEEEEecCCCeEEEEEeeCCCceeecceeeeCc----------c-----------ccc-chHHHHhhcCcCeEE-E
Q 033269           32 NAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA----------K-----------ADQ-ELPQLIEKHKVLGMV-V   88 (123)
Q Consensus        32 ~~~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~----------~-----------~~~-~L~~li~~~~i~~iV-V   88 (123)
                      .|+|++-+||.|+-.+=+.+.+....-..++......          .           ..+ .+.+++++++++.+. +
T Consensus         9 ~~~m~~a~IDiGSns~rl~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~~L~~f~~~~~~~~v~~i~~v   88 (315)
T 1t6c_A            9 KPIMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAV   88 (315)
T ss_dssp             -CCEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCcEEEEEEECcCcEEEEEEEEcCCcEEEEeeeeEEeecCCCccccCCcCHHHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence            3457999999999999999998654322222222110          0           013 677788899998655 5


Q ss_pred             eccCC-ChHHHHHHHHHHhhcccCCCCCEEEec
Q 033269           89 NMPKE-HHEHVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        89 GlP~~-dGt~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                      +--=- +-.....|.+++++.+   +++|...+
T Consensus        89 ATsA~R~A~N~~~fl~~v~~~~---G~~i~vIs  118 (315)
T 1t6c_A           89 ATEAIRRAKNAEEFLERVKREV---GLVVEVIT  118 (315)
T ss_dssp             ECHHHHTSTTHHHHHHHHHHHT---CCCEEECC
T ss_pred             EcHHHHcCcCHHHHHHHHHHHH---CCCEEEcC
Confidence            51000 1116678999999888   88888765

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=81.61  E-value=1.1  Score=38.15  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=18.2

Q ss_pred             CceEEEEecCCCeEEEEEeeC
Q 033269           34 GLGILGLDVGNKYIGVSLFKR   54 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~   54 (123)
                      |+.++|||+|+..+++|+.+.
T Consensus         1 M~~viGIDlGTT~S~Va~~~~   21 (605)
T 4b9q_A            1 MGKIIGIDLGTTNSCVAIMDG   21 (605)
T ss_dssp             -CCEEEEECCSSEEEEEEEET
T ss_pred             CCcEEEEEcCCCcEEEEEEEC
Confidence            678999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	123
d1iv0a_	98	c.55.3.8 (A:) Hypothetical protein, YqgF homologue	2e-06
d1vhxa_	140	c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Ba	1e-04
d1nu0a_	138	c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Es	7e-04

>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]} Length = 98

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein, YqgF homologue
species: Thermus thermophilus [TaxId: 274]

 Score = 41.4 bits (97), Expect = 2e-06
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 14/93 (15%)

Query: 37  ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQL---IEKHKVLGMVVNMPKE 93
           +  LDVG   IG+++ +             R   ++++  L   + +  +  +VV +P  
Sbjct: 3   VGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLR 62

Query: 94  HH-------EHVSSFIEQLDGNEIYRGLPFCYF 119
                      V   +E L      RG+    +
Sbjct: 63  TDLKESAQAGKVLPLVEALRA----RGVEVELW 91

>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YrrK (RuvX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.6 bits (84), Expect = 1e-04
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD-----QELPQLIEKHKVLGMVVNMP 91
          ILGLD+G K +GV+L    G   + +      +A+       L +LI+ + +  +V+  P
Sbjct: 4  ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFP 63

Query: 92 KEHHEH 97
          K  +  
Sbjct: 64 KNMNGT 69

>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]} Length = 138

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YqgF (RuvX)
species: Escherichia coli [TaxId: 562]

 Score = 35.0 bits (80), Expect = 7e-04
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 37  ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQL---IEKHKVLGMVVNMPKE 93
           ++  D G K IGV++ +R      PL          +   +   +++ +   ++V +P  
Sbjct: 5   LMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLN 64

Query: 94  HHEHVSSFIEQ 104
                     +
Sbjct: 65  MDGTEQPLTAR 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d1iv0a_	98	Hypothetical protein, YqgF homologue {Thermus ther	99.96
d1nu0a_	138	Hypothetical protein YqgF (RuvX) {Escherichia coli	99.94
d1vhxa_	140	Hypothetical protein YrrK (RuvX) {Bacillus subtili	99.94
d3bzka5	149	Transcriptional accessory factor Tex {Pseudomonas	99.0
d1hjra_	158	RuvC resolvase {Escherichia coli [TaxId: 562]}	97.99
d2aa4a1	119	N-acetylmannosamine kinase NanK {Escherichia coli	97.29
d1xc3a1	118	Putative fructokinase YhdR {Bacillus subtilis [Tax	97.19
d2gupa1	114	Hypothetical protein SP2142 {Streptococcus pneumon	97.18
d2ap1a2	117	Putative regulator protein YcfX {Salmonella typhim	96.93
d1z05a3	128	Transcriptional regulator VC2007 {Vibrio cholerae	96.2
d1okja1	106	Hypothetical protein YeaZ {Escherichia coli [TaxId	96.04
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	96.04
d2hoea3	128	N-acetylglucosamine kinase {Thermotoga maritima [T	95.9
d1t6ca1	126	Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6	95.52
d1z6ra2	129	Mlc protein {Escherichia coli [TaxId: 562]}	95.44
d2a6aa1	103	Hypothetical protein TM0874 {Thermotoga maritima [	95.01
d1woqa1	129	Inorganic polyphosphate/ATP-glucomannokinase PPGMK	94.98
d1sz2a1	319	Glucokinase Glk {Escherichia coli [TaxId: 562]}	94.83
d1zc6a1	114	Probable N-acetylglucosamine kinase CV2896 {Chromo	92.91
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	91.78
d1dkgd1	183	Heat shock protein 70kDa, ATPase fragment {Escheri	91.13
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	90.27
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	87.96
d2ch5a2	117	N-acetylglucosamine kinase, NAGK {Human (Homo sapi	85.45
d1u6za2	124	Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5	81.71
d2f9wa2	114	Type III pantothenate kinase, CoaX {Pseudomonas ae	81.38

>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein, YqgF homologue
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=8.1e-30  Score=174.96  Aligned_cols=84  Identities=19%  Similarity=0.289  Sum_probs=78.5

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc--ccc-chHHHHhhcCcCeEEEeccCC-ChH------HHHHHHHH
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--ADQ-ELPQLIEKHKVLGMVVNMPKE-HHE------HVSSFIEQ  104 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~--~~~-~L~~li~~~~i~~iVVGlP~~-dGt------~v~~f~~~  104 (123)
                      ||+||||||+||||+|+||+.+.+|+|+.++.+++  .++ .|.+++++|+++.||||+|++ ||+      .+++|+++
T Consensus         1 MriLglD~G~kriGiAisd~~~~~a~pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~dG~~~~~~~~v~~f~~~   80 (98)
T d1iv0a_           1 MRVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEA   80 (98)
T ss_dssp             CCEEEEEESSSEEEEEEECSCCSSCCCEEEEECCCHHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHH
T ss_pred             CcEEEEEcCCCEEEEEEecCCCCeEcceEEEECCCchHHHHHHHHHHHhhccceeEcccccccCCCcCHHHHHHHHHHHH
Confidence            79999999999999999999999999999998755  457 999999999999999999999 998      89999999


Q ss_pred             HhhcccCCCCCEEEecCC
Q 033269          105 LDGNEIYRGLPFCYFQKT  122 (123)
Q Consensus       105 L~~~~~~~~lpV~l~DEr  122 (123)
                      |++ .   ++||++||||
T Consensus        81 L~~-~---~lpv~~~DEr   94 (98)
T d1iv0a_          81 LRA-R---GVEVELWDER   94 (98)
T ss_dssp             HHH-T---TCEEEEECCS
T ss_pred             Hhh-C---CCCEEEEcCC
Confidence            975 4   7999999998

>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YqgF (RuvX)
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.3e-27  Score=172.29  Aligned_cols=86  Identities=19%  Similarity=0.353  Sum_probs=80.8

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc--ccc-chHHHHhhcCcCeEEEeccCC-ChH------HHHHHHH
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--ADQ-ELPQLIEKHKVLGMVVNMPKE-HHE------HVSSFIE  103 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~--~~~-~L~~li~~~~i~~iVVGlP~~-dGt------~v~~f~~  103 (123)
                      .+|+||||||+||||+|+||+.+.+|+|+.++.+++  .++ .|.+++++|++++||||+|++ +|+      .+++|++
T Consensus         2 ~griLgiD~G~kriGvAvsd~~~~~a~pl~~i~~~~~~~~~~~l~~i~~e~~~~~iVvG~P~~~~g~~~~~~~~v~~f~~   81 (138)
T d1nu0a_           2 SGTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFAN   81 (138)
T ss_dssp             CCEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCEEEEEEeCCCCCccccceeeecccchhhHHHHHHHhhccCccEEEeecccccccchHHHHHHHHHHHH
Confidence            379999999999999999999999999999998655  456 999999999999999999999 987      8999999


Q ss_pred             HHhhcccCCCCCEEEecCC
Q 033269          104 QLDGNEIYRGLPFCYFQKT  122 (123)
Q Consensus       104 ~L~~~~~~~~lpV~l~DEr  122 (123)
                      .|++++   ++||++||||
T Consensus        82 ~L~~~~---~i~V~~~DEr   97 (138)
T d1nu0a_          82 RIHGRF---GVEVKLHDER   97 (138)
T ss_dssp             HHHHHH---CCCEEEEEEE
T ss_pred             HHhhcc---CCCeEEEecc
Confidence            999999   8999999998

>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YrrK (RuvX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=4.5e-27  Score=169.77  Aligned_cols=86  Identities=26%  Similarity=0.451  Sum_probs=79.8

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeCccc----cc-chHHHHhhcCcCeEEEeccCC-ChH------HHHHH
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKA----DQ-ELPQLIEKHKVLGMVVNMPKE-HHE------HVSSF  101 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~~----~~-~L~~li~~~~i~~iVVGlP~~-dGt------~v~~f  101 (123)
                      .||+||||||+||||+|+||+.+.+|+|+.++.+++.    .+ .|.+++++|+|++||||+|++ ||+      .++.|
T Consensus         1 ~mriLgiD~G~kriGvAisd~~~~~a~pl~~i~~~~~~~~~~~~~l~~ii~e~~i~~iViGlP~~~dg~~~~~~~~~~~f   80 (140)
T d1vhxa_           1 SLRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTF   80 (140)
T ss_dssp             CEEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHH
T ss_pred             CceEEEEEeCCCEEEEEEecCCCCcccceeeEeecccccchHHHHHHHHHHhhccceEEEecccccCCcchhHHHHHHHH
Confidence            3899999999999999999999999999999986542    25 899999999999999999999 998      89999


Q ss_pred             HHHHhhcccCCCCCEEEecCC
Q 033269          102 IEQLDGNEIYRGLPFCYFQKT  122 (123)
Q Consensus       102 ~~~L~~~~~~~~lpV~l~DEr  122 (123)
                      ++.|++.+   ++||++||||
T Consensus        81 ~~~l~~~~---~i~V~~~DEr   98 (140)
T d1vhxa_          81 AKVLETTY---NVPVVLWDER   98 (140)
T ss_dssp             HHHHHHHH---CSCEEEECCS
T ss_pred             HHHhccCC---CccEEEeecc
Confidence            99999998   8999999998

>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Tex RuvX-like domain-like
domain: Transcriptional accessory factor Tex
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.00  E-value=7.1e-10  Score=79.76  Aligned_cols=84  Identities=18%  Similarity=0.174  Sum_probs=65.7

Q ss_pred             CceEEEEecC-CCeEEEEEeeCCCceeecceee-eCcc-----ccc-chHHHHhhcCcCeEEEeccCCChH---HHHHHH
Q 033269           34 GLGILGLDVG-NKYIGVSLFKRHGNEVEPLTKF-DRAK-----ADQ-ELPQLIEKHKVLGMVVNMPKEHHE---HVSSFI  102 (123)
Q Consensus        34 ~~riLglD~G-~kriGlAvsD~~~~~a~Pl~~i-~~~~-----~~~-~L~~li~~~~i~~iVVGlP~~dGt---~v~~f~  102 (123)
                      +.+|||+||| +.-|++|+.|.+|.+.. ..++ +...     ... .|.+++++|+++.|+||    |||   .++.|.
T Consensus         4 ~~~vlg~DPg~r~gck~AvlD~~G~vld-~~viyp~~~~~~~~~a~~~l~~li~k~~p~vIaIG----NgTasre~~~~v   78 (149)
T d3bzka5           4 PRATLGLDPGLRTGVKVAVVDATGKLLD-TATVYPHAPKNQWDQTLAVLAALCAKHQVELIAIG----NGTASRETDKLA   78 (149)
T ss_dssp             SCCEEEEECCSTTCEEEEEECTTSCEEE-EEEECCSTTTCCHHHHHHHHHHHHHHTTCCEEEEE----SSTTHHHHHHHH
T ss_pred             CceEEEECCCcccccEEEEECCCCCEEE-EEEEecCCcHHHHHHHHHHHHHHHHHcCCeEEEEC----CCccHHHHHHHH
Confidence            5789999999 89999999999998776 4555 2211     123 89999999999999999    998   677777


Q ss_pred             HHHhhcccCCCCCEEEecCC
Q 033269          103 EQLDGNEIYRGLPFCYFQKT  122 (123)
Q Consensus       103 ~~L~~~~~~~~lpV~l~DEr  122 (123)
                      ..|.+.....+++++++||.
T Consensus        79 ~~l~~~~~~~~i~~~iV~e~   98 (149)
T d3bzka5          79 GELIKKYPGMKLTKIMVSEA   98 (149)
T ss_dssp             HHHHHHCGGGCCEEEEECCT
T ss_pred             HHHHHhCCCCCcEEEEEecc
Confidence            77765443237899999984

>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: RuvC resolvase
domain: RuvC resolvase
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=2.7e-05  Score=55.13  Aligned_cols=81  Identities=14%  Similarity=0.181  Sum_probs=56.1

Q ss_pred             eEEEEecCCCeEEEEEeeCCCceee--cceeeeCccc-------cc--chHHHHhhcCcCeEEEeccCC--ChH------
Q 033269           36 GILGLDVGNKYIGVSLFKRHGNEVE--PLTKFDRAKA-------DQ--ELPQLIEKHKVLGMVVNMPKE--HHE------   96 (123)
Q Consensus        36 riLglD~G~kriGlAvsD~~~~~a~--Pl~~i~~~~~-------~~--~L~~li~~~~i~~iVVGlP~~--dGt------   96 (123)
                      -|||||||+.++|.|+-|..+.-.+  -.+++..+..       .+  +|.+++++|+++.+++=-|+-  |.+      
T Consensus         2 iILGIDPGl~~~G~avid~~~~~~~~v~~g~i~t~~~~~~~Rl~~i~~~l~~li~~~~Pd~vaiE~~f~~~n~~sa~~l~   81 (158)
T d1hjra_           2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLG   81 (158)
T ss_dssp             EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHH
T ss_pred             EEEEEccCCCceEEEEEEeeCCEEEEEEeeEEeCCCCChHHHHHHHHHHHHHHHhccCCCEEEEEeehhccCHHHHHHHH
Confidence            4899999999999999887764222  2245653221       13  899999999999999998876  554      


Q ss_pred             HHHHHHHHHhhcccCCCCCEEEe
Q 033269           97 HVSSFIEQLDGNEIYRGLPFCYF  119 (123)
Q Consensus        97 ~v~~f~~~L~~~~~~~~lpV~l~  119 (123)
                      .++--+.....+.   ++||..+
T Consensus        82 ~arG~i~l~a~~~---~ipi~e~  101 (158)
T d1hjra_          82 QARGVAIVAAVNQ---ELPVFEY  101 (158)
T ss_dssp             HHHHHHHHHHHTT---TCCEEEE
T ss_pred             HHHHHHHHHHHHc---Ccceeec
Confidence            3444444444444   7888754

>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00017  Score=47.31  Aligned_cols=82  Identities=12%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc----ccc--chHHHHhhc--CcCeEEEeccCC-ChH---------
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK----ADQ--ELPQLIEKH--KVLGMVVNMPKE-HHE---------   96 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~----~~~--~L~~li~~~--~i~~iVVGlP~~-dGt---------   96 (123)
                      |++||+|+|..++=+|+.|..+.+..- ..++...    ..+  .+.+++++.  ++.++-||.|=- |..         
T Consensus         1 M~~lgiDiGgT~i~~~l~d~~G~i~~~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~igI~~pG~v~~~~~~~~~~~~   79 (119)
T d2aa4a1           1 MTTLAIDIGGTKLAAALIGADGQIRDR-RELPTPASQTPEALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHN   79 (119)
T ss_dssp             CCEEEEEECSSEEEEEEECTTCCEEEE-EEEECCSSCCHHHHHHHHHHHHTTTGGGCSEEEEEESSEEETTEEECSSGGG
T ss_pred             CeEEEEEeCcCEEEEEEEcCCCCEEEe-EEEeccccCcHHHHHHHHHHHHHHhhccCceEEEEeeeeEcCCCcEEEccCc
Confidence            678999999999999999999986653 3333211    123  667777654  578888888765 322         


Q ss_pred             ----HHHHHHHHHhhcccCCCCCEEEec
Q 033269           97 ----HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 ----~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                          .-..+++.|++++   ++||.+.+
T Consensus        80 l~~w~~~~l~~~l~~~~---~~pv~i~N  104 (119)
T d2aa4a1          80 LGGLLHFPLVKTLEQLT---NLPTIAIN  104 (119)
T ss_dssp             GGGGTTCCHHHHHHHHH---CSCEEEEE
T ss_pred             cccccCCCHHHHHHHHh---CCCEEEEe
Confidence                1234588999988   89998754

>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=97.19  E-value=0.00039  Score=45.52  Aligned_cols=80  Identities=9%  Similarity=0.196  Sum_probs=61.2

Q ss_pred             EEEEecCCCeEEEEEeeCCCceeecceeeeCcc--ccc-chHHHHhhcCcCeEEEeccCC-C--------hH--------
Q 033269           37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--ADQ-ELPQLIEKHKVLGMVVNMPKE-H--------HE--------   96 (123)
Q Consensus        37 iLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~--~~~-~L~~li~~~~i~~iVVGlP~~-d--------Gt--------   96 (123)
                      ++|||+|..++-+++.|..+.+.. ...++.+.  ..+ .+.++++++++.++-||.|=- +        |+        
T Consensus         2 ~~giDiGgT~i~~~l~d~~g~i~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~igi~~~G~v~~~~~~~~~g~v~~~~~~~   80 (118)
T d1xc3a1           2 LGGIEAGGTKFVCAVGREDGTIID-RIEFPTKMPDETIEKVIQYFSQFSLQAIGIGSFGPVDNDKTSQTYGTITATPKAG   80 (118)
T ss_dssp             EEEEEECSSEEEEEEECTTSCEEE-EEEEECCCHHHHHHHHHHHHTTSCCSEEEEEECSSBCCCTTSTTTTSBCCCSSTT
T ss_pred             EEEEEeccCEEEEEEEcCCCCEEE-EEEecCCCHHHHHHHHHHHHhhccceecceeEEeeeecCCCccceeEEEcCCccc
Confidence            689999999999999999988765 34555332  235 888999999999999999843 2        11        


Q ss_pred             -HHHHHHHHHhhcccCCCCCEEEec
Q 033269           97 -HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 -~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                       .--.+++.|++++   ++||.+.+
T Consensus        81 w~~~~l~~~l~~~~---~~pv~i~N  102 (118)
T d1xc3a1          81 WRHYPFLQTVKNEM---KIPVGFST  102 (118)
T ss_dssp             TBTCCHHHHHHHHH---CSCEEEEE
T ss_pred             ccCcCHHHHHHHHH---CCCEEEee
Confidence             1245788899998   89998765

>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.18  E-value=0.00029  Score=46.28  Aligned_cols=81  Identities=21%  Similarity=0.304  Sum_probs=57.8

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc--cc-c-chHHHHhhcCcCeEEEeccCC----ChH----------
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--AD-Q-ELPQLIEKHKVLGMVVNMPKE----HHE----------   96 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~--~~-~-~L~~li~~~~i~~iVVGlP~~----dGt----------   96 (123)
                      |+++|+|+|..++=+|+.|..+.+... ..++..+  .. + .+.+.+.++++.+|-||.|=.    +|.          
T Consensus         1 M~i~~iDiGgT~i~~~l~d~~g~i~~~-~~~~t~~~~~~~~~~i~~~~~~~~i~gIGi~~pG~vd~~~g~i~~~~~l~~~   79 (114)
T d2gupa1           1 MTIATIDIGGTGIKFASLTPDGKILDK-TSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYI   79 (114)
T ss_dssp             CCEEEEEEETTEEEEEEECTTCCEEEE-EEECCCSSHHHHHHHHHHHHTTSCCSEEEEEESSEECTTTCBEESCCSSGGG
T ss_pred             CeEEEEEeCcccEEEEEEcCCCCEEEE-EEEcccccHHHHHHHHHHHhhhcccceEEEeccccccCCccEEEcccccCcc
Confidence            689999999999999999998876653 4454222  22 3 888888899999999998653    243          


Q ss_pred             HHHHHHHHHhhcccCCCCCEEEec
Q 033269           97 HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 ~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                      .-..+.+.++ ++   ++||.+-+
T Consensus        80 ~~~~l~~~l~-~~---~~pV~veN   99 (114)
T d2gupa1          80 HGFSWYEALS-SY---QLPVHLEN   99 (114)
T ss_dssp             SSSBHHHHTG-GG---CCCEEEEE
T ss_pred             cCCcHHHHHH-hC---CCCEEEEh
Confidence            1223445554 57   89988753

>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.93  E-value=0.0018  Score=41.72  Aligned_cols=80  Identities=11%  Similarity=0.141  Sum_probs=54.5

Q ss_pred             EEEEecCCCeEEEEEeeCCCceeecceeeeCccc---c-c-chHHHHh----hc-CcCeEEEeccCC-C---hH------
Q 033269           37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKA---D-Q-ELPQLIE----KH-KVLGMVVNMPKE-H---HE------   96 (123)
Q Consensus        37 iLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~~---~-~-~L~~li~----~~-~i~~iVVGlP~~-d---Gt------   96 (123)
                      +||||+|..+|=+|+.|..+.+..- ..++....   . + .+.++++    ++ .+.++-||.|=. |   |.      
T Consensus         2 yiGiDiGgT~i~~~l~d~~g~i~~~-~~~~t~~~~~~~~~~~i~~~i~~~~~~~~~~~~igi~~pG~vd~~~g~i~~~~~   80 (117)
T d2ap1a2           2 YYGFDIGGTKIALGVFDSTRRLQWE-KRVPTPHTSYSAFLDAVCELVEEADQRFGVKGSVGIGIPGMPETEDGTLYAANV   80 (117)
T ss_dssp             EEEEEECSSEEEEEEEETTCCEEEE-EEEECCCSCHHHHHHHHHHHHHHHHHHHTSCCEEEEEESSBSCCTTSCCBCTTC
T ss_pred             EEEEEECcceEEEEEEeCCCCEEEE-EEEeecccCHHHHHHHHHHHHHHHHhhcCcceeEEEecCCccccccceeeccCc
Confidence            5999999999999999999886652 44543221   1 2 4455443    33 456788888764 3   22      


Q ss_pred             ---HHHHHHHHHhhcccCCCCCEEEec
Q 033269           97 ---HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 ---~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                         .-..+++.|++++   ++||.+-+
T Consensus        81 ~~w~~~~l~~~l~~~~---~~pv~l~N  104 (117)
T d2ap1a2          81 PAASGKPLRADLSARL---DRDVRLDN  104 (117)
T ss_dssp             TTTTTSCHHHHHHHHH---TSCEEEEE
T ss_pred             cccCCCcHHHHHHHHh---CCCEEEEe
Confidence               3345678888888   89998754

>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

Probab=96.20  E-value=0.0032  Score=40.80  Aligned_cols=82  Identities=18%  Similarity=0.331  Sum_probs=55.0

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc---cc-----c-chHHHHhhcC-----cCeEEEeccCC-C--hH-
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---AD-----Q-ELPQLIEKHK-----VLGMVVNMPKE-H--HE-   96 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~---~~-----~-~L~~li~~~~-----i~~iVVGlP~~-d--Gt-   96 (123)
                      -.+||+|.|..++-+|+.|..+.+..- ..++.+.   ..     . .+.+++++++     +.+|-||.|=. |  +. 
T Consensus         4 ~~~lgi~ig~~~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gIgi~~pG~vd~~~~~   82 (128)
T d1z05a3           4 WQFLSMRLGRGYLTIALHELGGEVLID-TKIDIHEIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSEQGI   82 (128)
T ss_dssp             EEEEEEEEETTEEEEEEEETTSCEEEE-EEEECCCCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEESSEEETTTTE
T ss_pred             CEEEEEEECCCEEEEEEEcCCCCEEEE-EEeccccCCHHHHHHHHHHHHHHHHHHcccccccceEEEeeeeeeeecccee
Confidence            358999999999999999999986552 3344222   11     2 5555555554     45677887754 2  21 


Q ss_pred             ---------HHHHHHHHHhhcccCCCCCEEEec
Q 033269           97 ---------HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 ---------~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                               .-..+.+.|++++   ++||.+.+
T Consensus        83 ~~~~~~~~~~~~~l~~~l~~~~---~~PV~l~N  112 (128)
T d1z05a3          83 VLQMPHYNVKNLALGPEIYKAT---GLPVFVAN  112 (128)
T ss_dssp             EEECSSSBCSSBCHHHHHHHHH---CSCEEEEE
T ss_pred             eeccccCCCCCcchHHHHHHhc---CCCEEEEe
Confidence                     2235678888888   89998764

>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: YeaZ-like
domain: Hypothetical protein YeaZ
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.02  Score=37.11  Aligned_cols=81  Identities=12%  Similarity=0.153  Sum_probs=56.6

Q ss_pred             eEEEEecCCCeEEEEEeeCCCceeecceeeeCcc-ccc--chHHHHhhc-----CcCeEEEec-cCC-ChH-HHHHHHHH
Q 033269           36 GILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK-ADQ--ELPQLIEKH-----KVLGMVVNM-PKE-HHE-HVSSFIEQ  104 (123)
Q Consensus        36 riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~-~~~--~L~~li~~~-----~i~~iVVGl-P~~-dGt-~v~~f~~~  104 (123)
                      ||||||-=++.+++|+.+....+.. .....+.. +.+  .+.+++++.     +++.|+++. |=+ -|- ....|++-
T Consensus         1 kiLaIdTS~~~~sval~~~~~i~~~-~~~~~~~h~~~l~~~i~~~l~~~~~~~~di~~i~v~~GPGsfTglRig~s~akg   79 (106)
T d1okja1           1 RILAIDTATEACSVALWNDGTVNAH-FELCPREHTQRILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQG   79 (106)
T ss_dssp             EEEEEECSSSEEEEEEEETTEEEEE-EEECCSSTTTTHHHHHHHHHHHTTCCGGGCCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCcceEEEEEECCEEEEE-EEEccHHHHHHHHHHHHHHHHhcCCcceeeeEEEEeeccCccccchHHHHHHHH
Confidence            6999999999999999996655544 23333322 233  788888764     478899883 222 222 77889999


Q ss_pred             HhhcccCCCCCEEEec
Q 033269          105 LDGNEIYRGLPFCYFQ  120 (123)
Q Consensus       105 L~~~~~~~~lpV~l~D  120 (123)
                      |....   ++|++=++
T Consensus        80 la~~~---~ip~~~v~   92 (106)
T d1okja1          80 LALGA---ELPMIGVS   92 (106)
T ss_dssp             HHHHT---TCCEEEEE
T ss_pred             HHHHc---CCCEEEeC
Confidence            98877   88987553

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0097  Score=37.95  Aligned_cols=82  Identities=16%  Similarity=0.167  Sum_probs=54.3

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc-ccc--chHHHHhhcC--cCeEEEeccCC-ChH-------HHHHH
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK-ADQ--ELPQLIEKHK--VLGMVVNMPKE-HHE-------HVSSF  101 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~-~~~--~L~~li~~~~--i~~iVVGlP~~-dGt-------~v~~f  101 (123)
                      ..+|++|+|.-++=+|+.|..+....-....+... ..+  .+.+++++++  +..+.+|.|-. +|.       .-...
T Consensus         2 ~~~L~~DIGGTn~r~alv~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ag~~~~~~~~~~n~~w~~~   81 (110)
T d1q18a1           2 KYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTWAFS   81 (110)
T ss_dssp             CEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCSEEEEEESSCCCSSEECCSSGGGCEE
T ss_pred             cEEEEEEECchhEEEEEEEcCCCeEEEEEeecccchhhHHHHHHHHHhhcccccceEEEcccccccCcEEeecccCCccC
Confidence            46899999999999999997765444344554322 233  5666666554  78888988877 665       11223


Q ss_pred             HHHHhhcccCCCCC-EEEe
Q 033269          102 IEQLDGNEIYRGLP-FCYF  119 (123)
Q Consensus       102 ~~~L~~~~~~~~lp-V~l~  119 (123)
                      .+.|++++   ++| |.+.
T Consensus        82 ~~~l~~~~---~~~~v~v~   97 (110)
T d1q18a1          82 IAEMKKNL---GFSHLEII   97 (110)
T ss_dssp             HHHHHHHT---TCSEEEEE
T ss_pred             HHHHHHHh---CCCcEEEE
Confidence            46777777   665 6654

>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.90  E-value=0.0061  Score=39.55  Aligned_cols=84  Identities=14%  Similarity=0.160  Sum_probs=55.1

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc----cc-c-chHHHHh---------hcCcCeEEEeccCC-C---
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK----AD-Q-ELPQLIE---------KHKVLGMVVNMPKE-H---   94 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~----~~-~-~L~~li~---------~~~i~~iVVGlP~~-d---   94 (123)
                      ...++|+|+|..++-+++.|..+.+..- ..++...    .. + .+.++++         ..++.+|-||.|=. |   
T Consensus         3 ~~~~igidig~~~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~~   81 (128)
T d2hoea3           3 CAYVLGIEVTRDEIAACLIDASMNILAH-EAHPLPSQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAAPGPIDTER   81 (128)
T ss_dssp             GCEEEEEEECSSEEEEEEEETTCCEEEE-EEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEESSCEETTT
T ss_pred             cEEEEEEEECCCEEEEEEEcCCCCEEEE-EEEecccCCCHHHHHHHHHHHHHHHHHHhccccCceEEEecceeeeEcCCC
Confidence            4579999999999999999999876542 3333211    11 2 3333332         25578888888754 3   


Q ss_pred             hH---------HHHHHHHHHhhcccCCCCCEEEecC
Q 033269           95 HE---------HVSSFIEQLDGNEIYRGLPFCYFQK  121 (123)
Q Consensus        95 Gt---------~v~~f~~~L~~~~~~~~lpV~l~DE  121 (123)
                      |.         .--.+.+.|++++   ++||.+.++
T Consensus        82 g~i~~~~~l~w~~~~l~~~l~~~~---~~pv~i~ND  114 (128)
T d2hoea3          82 GIIIDPRNFPLSQIPLANLLKEKY---GIEVWVEND  114 (128)
T ss_dssp             TEECCCSSCTTBTSCHHHHHHHHH---CSEEEEEEH
T ss_pred             CEEEeeccccccCCchHHHHHHHc---CCCEEEEeH
Confidence            22         2234678888888   899987653

>d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.52  E-value=0.028  Score=37.54  Aligned_cols=80  Identities=15%  Similarity=0.245  Sum_probs=56.1

Q ss_pred             CCceEEEEecCCCeEEEEEeeCCCceeecceeeeC----------cc-----------ccc-chHHHHhhcCcCeEEEec
Q 033269           33 AGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDR----------AK-----------ADQ-ELPQLIEKHKVLGMVVNM   90 (123)
Q Consensus        33 ~~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~----------~~-----------~~~-~L~~li~~~~i~~iVVGl   90 (123)
                      ||||+-+||.|+-.+=+.+.+....-..++.....          ++           +.+ .+.+++++|+++.+.+= 
T Consensus         1 ~mmriavIDIGSNsirl~I~~~~~~~~~~l~~~~~~~~Lg~~~~~~g~ls~~~i~~~~~~l~~f~~~~~~~~v~~~~~v-   79 (126)
T d1t6ca1           1 PIMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAV-   79 (126)
T ss_dssp             CCEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEE-
T ss_pred             CCCEEEEEEEccceEEEEEEEecCCcceeeeeeeEEEEcccCccccCCCCHHHHHHHHHHHHHHHHHHHhcCccceEEe-
Confidence            79999999999999999998865543332222210          00           114 67777889999765443 


Q ss_pred             cCCChH-------HHHHHHHHHhhcccCCCCCEEEec
Q 033269           91 PKEHHE-------HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        91 P~~dGt-------~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                          ||       ....|.+++++++   ++++...|
T Consensus        80 ----aTsA~R~A~N~~~~~~~i~~~t---gi~i~Iis  109 (126)
T d1t6ca1          80 ----ATEAIRRAKNAEEFLERVKREV---GLVVEVIT  109 (126)
T ss_dssp             ----ECHHHHTSTTHHHHHHHHHHHT---CCCEEECC
T ss_pred             ----hhHHHHhCcCHHHHHHHHHHHH---CCCeEEeC
Confidence                33       6778999999988   89988765

>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Mlc protein
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.015  Score=37.58  Aligned_cols=83  Identities=14%  Similarity=0.155  Sum_probs=54.9

Q ss_pred             CceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc---cc----c--chHHHHhh-----cCcCeEEEeccCC---C-h
Q 033269           34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---AD----Q--ELPQLIEK-----HKVLGMVVNMPKE---H-H   95 (123)
Q Consensus        34 ~~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~---~~----~--~L~~li~~-----~~i~~iVVGlP~~---d-G   95 (123)
                      .-+++|+|+|..++-+++.|..+.+.. ...++.+.   ..    +  .+.+++++     .++.+|-|+.|=.   + |
T Consensus         3 ~~~~l~i~i~~~~i~~~l~Dl~G~~l~-~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~i~gIgi~~pG~v~~~~~   81 (129)
T d1z6ra2           3 AWHYLSLRISRGEIFLALRDLSSKLVV-EESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENG   81 (129)
T ss_dssp             TCEEEEEEEETTEEEEEEEETTCCEEE-EEEEECCSSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEESSEEETTTT
T ss_pred             ceEEEEEEECCCEEEEEEEcCCCCEEE-EEEeeccccchhHHHHHHHHHHHHHHHhcCcccccceeEEEeeeeeeeeccc
Confidence            457999999999999999999997654 23333221   11    1  44444443     3566788888743   2 2


Q ss_pred             H----------HHHHHHHHHhhcccCCCCCEEEec
Q 033269           96 E----------HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        96 t----------~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                      .          .--.+.+.|++++   ++||.+.+
T Consensus        82 ~~~~~~~~~~w~~~~l~~~l~~~~---~~pV~~~N  113 (129)
T d1z6ra2          82 IVHRMPFYEDVKEMPLGEALEQHT---GVPVYIQH  113 (129)
T ss_dssp             EEEECTTCTTCSSBCHHHHHHHHH---SSCEEEEE
T ss_pred             ceeccCcchhccCcchHHHHHHhc---CCCEEEEe
Confidence            2          2245677888888   89988754

>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: YeaZ-like
domain: Hypothetical protein TM0874
species: Thermotoga maritima [TaxId: 2336]

Probab=95.01  E-value=0.083  Score=33.71  Aligned_cols=81  Identities=14%  Similarity=0.096  Sum_probs=52.0

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc-ccc--chHHHHhhc-----CcCeEEEec-cCC-ChH-HHHHHHH
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK-ADQ--ELPQLIEKH-----KVLGMVVNM-PKE-HHE-HVSSFIE  103 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~-~~~--~L~~li~~~-----~i~~iVVGl-P~~-dGt-~v~~f~~  103 (123)
                      |.+|+||-- .++.+|+.+.......- ..-.+.. +.+  .+.+++++.     +++.|+++. |=+ -|- ....|++
T Consensus         1 M~iLaidTS-~~~sval~~~~~~~~~~-~~~~~~hs~~l~~~i~~~l~~~~~~~~di~~i~v~~GPGsfTglRig~s~ak   78 (103)
T d2a6aa1           1 MNVLALDTS-QRIRIGLRKGEDLFEIS-YTGEKKHAEILPVVVKKLLDELDLKVKDLDVVGVGIGPGGLTGLRVGIATVV   78 (103)
T ss_dssp             CEEEEEECS-SSEEEEEEETTEEEEEE-EESCGGGGGHHHHHHHHHHHHHTCCGGGCSEEEEECCSSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcC-cccEEEEEECCEEEEEe-ccCchHHHHHHHHHHHHHHHHcCCCHHHhHHHhhcCCCCcchhHHHHHHHHH
Confidence            689999986 57999999865433221 1111211 223  777887764     466999982 111 121 7778999


Q ss_pred             HHhhcccCCCCCEEEec
Q 033269          104 QLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus       104 ~L~~~~~~~~lpV~l~D  120 (123)
                      .|....   ++|++-++
T Consensus        79 gla~~~---~ip~~gis   92 (103)
T d2a6aa1          79 GLVSPY---DIPVAPLN   92 (103)
T ss_dssp             HHHGGG---TCCEEEEC
T ss_pred             HHHHHc---CCCEEEeC
Confidence            998877   88987654

>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK
species: Arthrobacter sp. KM [TaxId: 184230]

Probab=94.98  E-value=0.036  Score=35.63  Aligned_cols=83  Identities=13%  Similarity=0.170  Sum_probs=51.8

Q ss_pred             ceEEEEecCCCeEEEEEeeCC-CceeecceeeeCcc----ccc--chHHHHhh----c----CcCeEEEeccCC--ChH-
Q 033269           35 LGILGLDVGNKYIGVSLFKRH-GNEVEPLTKFDRAK----ADQ--ELPQLIEK----H----KVLGMVVNMPKE--HHE-   96 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~-~~~a~Pl~~i~~~~----~~~--~L~~li~~----~----~i~~iVVGlP~~--dGt-   96 (123)
                      ..+||+|+|..++=+|+.|.. +.+..-...++...    ..+  .+.+++++    +    .+.+|-||.|-.  +|+ 
T Consensus         2 ~~vlGiDiGgT~i~~~l~d~~~g~i~~~~~~~~t~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~gIGi~~pG~vd~~~~   81 (129)
T d1woqa1           2 APLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPATPESVAEAVALVVAELSARPEAPAAGSPVGVTFPGIIQHGVV   81 (129)
T ss_dssp             CCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHTSTTCCCTTCCEEEEESSCEETTEE
T ss_pred             CCEEEEEECcceEEEEEEECCCCEEEEEEeecccccCCCHHHHHHHHHHHHHHHHhccccccccceeeecceeeEecCeE
Confidence            468999999999999999865 44443223343211    112  34444332    2    355677888866  344 


Q ss_pred             ----------HHHHHHHHHhhcccCCCCCEEEec
Q 033269           97 ----------HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        97 ----------~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                                .-..+.+.|++++   ++||.+-+
T Consensus        82 ~~~~~~~~~w~~~~l~~~l~~~~---~~pv~i~N  112 (129)
T d1woqa1          82 HSAANVDKSWLNTDIDALLTARL---GRPVEVIN  112 (129)
T ss_dssp             CCCTTSCGGGTTCBHHHHHHHHH---TSCEEEEE
T ss_pred             EEecccCCCcccccchhhHHHhc---CCcEEEEE
Confidence                      2234778899888   89988754

>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.035  Score=40.30  Aligned_cols=58  Identities=17%  Similarity=0.186  Sum_probs=43.6

Q ss_pred             eEEEEecCCCeEEEEEeeCCCceeecceeeeCcc-ccc--chHHHHhhcC--cCeEEEeccCC
Q 033269           36 GILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK-ADQ--ELPQLIEKHK--VLGMVVNMPKE   93 (123)
Q Consensus        36 riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~-~~~--~L~~li~~~~--i~~iVVGlP~~   93 (123)
                      ..|++|+|.-+|=.|+.|..........+.+..+ ..+  .+.+++++++  +..+-||.|=.
T Consensus         2 y~L~~DIGGT~ir~glvd~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~igI~~pG~   64 (319)
T d1sz2a1           2 YALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGCIAIACP   64 (319)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHSCCCCCEEEEEESSC
T ss_pred             EEEEEEEChhheeeEEEECCCCEEEEEEEeCCCCHhHHHHHHHHHHHhcCCCcceEEEEcccC
Confidence            5699999999999999998765555455665333 344  7888888774  88999999744

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=92.91  E-value=0.072  Score=33.73  Aligned_cols=28  Identities=18%  Similarity=0.256  Sum_probs=25.0

Q ss_pred             CCCceEEEEecCCCeEEEEEeeCCCcee
Q 033269           32 NAGLGILGLDVGNKYIGVSLFKRHGNEV   59 (123)
Q Consensus        32 ~~~~riLglD~G~kriGlAvsD~~~~~a   59 (123)
                      |+|..+||||.|..+|=.++.|..+.+.
T Consensus         1 psm~y~lGID~GGT~tk~~l~d~~G~il   28 (114)
T d1zc6a1           1 PSIRYLIGVDGGGTGTRIRLHASDGTPL   28 (114)
T ss_dssp             CCCCEEEEEEECSSCEEEEEEETTCCEE
T ss_pred             CCccEEEEEEcCcceEEEEEEcCCCCEE
Confidence            5688999999999999999999998754

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=91.78  E-value=0.16  Score=35.03  Aligned_cols=47  Identities=17%  Similarity=0.280  Sum_probs=32.5

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCcc--cc-c-chHHHHhhcC
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--AD-Q-ELPQLIEKHK   82 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~--~~-~-~L~~li~~~~   82 (123)
                      |.+||||.|..+|=.|+.|..+.+..- ..++...  .. + .+.+++++..
T Consensus         2 M~~lGIDiGGT~~k~~vvd~~g~il~~-~~~~t~~~~~~~~~~i~~~l~~~~   52 (259)
T d1huxa_           2 IYTLGIDVGSTASKCIILKDGKEIVAK-SLVAVGTGTSGPARSISEVLENAH   52 (259)
T ss_dssp             CEEEEEEECSSEEEEEEEETTTEEEEE-EEEECCSSCCHHHHHHHHHHHHHT
T ss_pred             cEEEEEEeCcceEEEEEEcCCCcEEEE-EEecCCCCHHHHHHHHHHHHHHcc
Confidence            789999999999999999999976542 3333221  12 3 6666665543

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=91.13  E-value=0.046  Score=37.70  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=18.1

Q ss_pred             eEEEEecCCCeEEEEEeeCCC
Q 033269           36 GILGLDVGNKYIGVSLFKRHG   56 (123)
Q Consensus        36 riLglD~G~kriGlAvsD~~~   56 (123)
                      ||+|||+|+..+.+|+.+...
T Consensus         1 ~VvGIDfGTt~s~va~~~~~~   21 (183)
T d1dkgd1           1 KIIGIDLGTTNSCVAIMDGTT   21 (183)
T ss_dssp             CCCEEECCSSEEEEEEEETTE
T ss_pred             CEEEEEcChhcEEEEEEECCE
Confidence            689999999999999987543

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.27  E-value=0.084  Score=36.34  Aligned_cols=22  Identities=27%  Similarity=0.527  Sum_probs=18.9

Q ss_pred             ceEEEEecCCCeEEEEEeeCCC
Q 033269           35 LGILGLDVGNKYIGVSLFKRHG   56 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~   56 (123)
                      +.++|||+|+..+.+|+.+...
T Consensus         1 g~vvGIDfGTt~s~va~~~~g~   22 (185)
T d1bupa1           1 GPAVGIDLGSTYSCVGVFQHGK   22 (185)
T ss_dssp             CCCEEEEECSSEEEEEEEETTE
T ss_pred             CCEEEEEcChhcEEEEEEECCE
Confidence            4689999999999999998643

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.96  E-value=0.52  Score=32.06  Aligned_cols=53  Identities=8%  Similarity=0.191  Sum_probs=40.4

Q ss_pred             ceEEEEecCCCeEEEEEeeCCCceeecceeeeCccccc-chHHHHhhcCcCeEEEeccCC
Q 033269           35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ-ELPQLIEKHKVLGMVVNMPKE   93 (123)
Q Consensus        35 ~riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~~~~-~L~~li~~~~i~~iVVGlP~~   93 (123)
                      |+ +|||+|.-+|=+|+.|.++.+..   ..+  .... .+.+.+.+..++.+-++.|-.
T Consensus         1 Mk-iGIDiGGT~ik~~lvd~~g~i~~---~~~--~~t~~~i~~~i~~~~~~~i~i~g~g~   54 (267)
T d2ewsa1           1 MK-VGIDAGGTLIKIVQEQDNQRTFK---TEL--TKNIDQVVEWLNQQQIEKLCLTGGNA   54 (267)
T ss_dssp             CE-EEEEECSSEEEEEEECSSCEEEE---EEE--GGGHHHHHHHHHTSCCSEEEEESTTH
T ss_pred             CE-EEEEEChhhEEEEEEeCCCcEEE---EEe--cccHHHHHHHHHHhhhhheeeecccc
Confidence            44 79999999999999998887643   222  1345 788888889999988887544

>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.45  E-value=2.9  Score=26.29  Aligned_cols=74  Identities=12%  Similarity=0.080  Sum_probs=49.0

Q ss_pred             eEEEEecCCCeEEEEEeeCCCceeecceeeeCcc------cc-c-chHH----HHhh------cCcCeEEEeccCC-ChH
Q 033269           36 GILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK------AD-Q-ELPQ----LIEK------HKVLGMVVNMPKE-HHE   96 (123)
Q Consensus        36 riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~------~~-~-~L~~----li~~------~~i~~iVVGlP~~-dGt   96 (123)
                      -++|||-|..+|=.++.|.++.+..- ..-...|      .. . .|.+    ..++      .++..+.+|++=- ...
T Consensus         4 ~~~GIDgGGTkT~~~l~d~~G~~l~~-~~~g~~N~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~i~~i~~GlAG~~~~~   82 (117)
T d2ch5a2           4 IYGGVEGGGTRSEVLLVSEDGKILAE-ADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQED   82 (117)
T ss_dssp             EEEEEEECTTCEEEEEEETTSCEEEE-EEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEETTTTCHH
T ss_pred             EEEEEEcChhhEEEEEECCCCCEEEE-EEcCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCccccEEEEEeeccCcch
Confidence            46999999999999999999874431 1111111      11 1 3333    3221      3688999998754 555


Q ss_pred             HHHHHHHHHhhccc
Q 033269           97 HVSSFIEQLDGNEI  110 (123)
Q Consensus        97 ~v~~f~~~L~~~~~  110 (123)
                      ..+.+.+.|++.++
T Consensus        83 ~~~~l~~~l~~~~~   96 (117)
T d2ch5a2          83 AGRILIEELRDRFP   96 (117)
T ss_dssp             HHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHCC
Confidence            78888999988876

>d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Escherichia coli [TaxId: 562]

Probab=81.71  E-value=1.7  Score=28.21  Aligned_cols=77  Identities=8%  Similarity=0.214  Sum_probs=51.3

Q ss_pred             EEEEecCCCeEEEEEeeCCCceeecceeeeC----------cc-----------ccc-chHHHHhhcCcCeE-EEeccCC
Q 033269           37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDR----------AK-----------ADQ-ELPQLIEKHKVLGM-VVNMPKE   93 (123)
Q Consensus        37 iLglD~G~kriGlAvsD~~~~~a~Pl~~i~~----------~~-----------~~~-~L~~li~~~~i~~i-VVGlP~~   93 (123)
                      +-+||+|+..+=+.+.+....-..++.....          ++           ..+ .+.+++++|+++.+ ++|    
T Consensus         2 ~A~IDiGSNsirl~I~~~~~~~~~~l~~~~~~~rLg~~~~~~g~l~~~~i~~~~~~l~~f~~~~~~~~v~~i~~va----   77 (124)
T d1u6za2           2 FAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIVG----   77 (124)
T ss_dssp             EEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCCBCHHHHHHHHHHHHHHHHHTTTCCGGGEEEEE----
T ss_pred             EEEEEEccceEEEEEEEecCCCeeEeeeeeEEeehhhhccccCCcCHHHHHHHHHHHHHHHHHHHhcCcceehhhH----
Confidence            4689999999999988765543333333221          00           013 66777788999765 555    


Q ss_pred             ChH-----HHHHHHHHHhhcccCCCCCEEEec
Q 033269           94 HHE-----HVSSFIEQLDGNEIYRGLPFCYFQ  120 (123)
Q Consensus        94 dGt-----~v~~f~~~L~~~~~~~~lpV~l~D  120 (123)
                      -..     ....|.+++++.+   ++++...+
T Consensus        78 TsA~R~A~N~~~~~~~i~~~~---gi~i~ils  106 (124)
T d1u6za2          78 THTLRQALNATDFLKRAEKVI---PYPIEIIS  106 (124)
T ss_dssp             CHHHHHCTTHHHHHHHHTTTC---SSCEEECC
T ss_pred             HHHHHcCccHHHHHHHHHHHh---CCCEEEeC
Confidence            111     6678999999988   89988765

>d2f9wa2 c.55.1.13 (A:1-114) Type III pantothenate kinase, CoaX {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.38  E-value=4  Score=25.02  Aligned_cols=76  Identities=17%  Similarity=0.154  Sum_probs=42.4

Q ss_pred             eEEEEecCCCeEEEEEeeCCCceeecceeeeCcc-ccc-chHHHHhhcCcCeEEEeccCCChHHHHHHHHHHhhcccCCC
Q 033269           36 GILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK-ADQ-ELPQLIEKHKVLGMVVNMPKEHHEHVSSFIEQLDGNEIYRG  113 (123)
Q Consensus        36 riLglD~G~kriGlAvsD~~~~~a~Pl~~i~~~~-~~~-~L~~li~~~~i~~iVVGlP~~dGt~v~~f~~~L~~~~~~~~  113 (123)
                      .+|.||+|..++=+|+.+....+..  ..+.... ... .+.. ....+++.+++--=. +-.....+.+.+++.+   +
T Consensus         1 M~LliDiGNT~iK~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~v~issVv-~~~~~~~l~~~~~~~~---~   73 (114)
T d2f9wa2           1 MILELDCGNSLIKWRVIEGAARSVA--GGLAESDDALVEQLTS-QQALPVRACRLVSVR-SEQETSQLVARLEQLF---P   73 (114)
T ss_dssp             EEEEEEECSSCEEEEEEETTTEEEE--EEEESSHHHHHHHHHH-TTTSCEEEEEEEECS-CHHHHHHHHHHHHHHS---S
T ss_pred             CEEEEEECCCeEEEEEEECCeEEEE--eeeecChHHHHHHHhh-hccCCCceEEEEEec-CHHHHHHHHHHHHHhc---C
Confidence            3699999999999999997665544  2333111 111 2222 234467777776100 1224455556666655   4


Q ss_pred             CCEEE
Q 033269          114 LPFCY  118 (123)
Q Consensus       114 lpV~l  118 (123)
                      +++.+
T Consensus        74 ~~~~~   78 (114)
T d2f9wa2          74 VSALV   78 (114)
T ss_dssp             CCCEE
T ss_pred             CceEE
Confidence            55444